I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 12 19:44:43 +14 2025 I: pbuilder-time-stamp: 1749707083 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pbcore_2.1.2+dfsg-7.dsc] I: copying [./python-pbcore_2.1.2+dfsg.orig.tar.xz] I: copying [./python-pbcore_2.1.2+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Mar 22 17:06:07 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pbcore_2.1.2+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting python-pbcore in python-pbcore-2.1.2+dfsg dpkg-source: info: unpacking python-pbcore_2.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking python-pbcore_2.1.2+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doc-theme.patch dpkg-source: info: applying exclude_test_missing_data.patch dpkg-source: info: applying b24746790c7105212e45dc2f40115d231bd8baae.patch dpkg-source: info: applying seek-curdir-for-xml.patch dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 12 05:44 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=8e695b49852a4039945b27d0b5376262 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2880032 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.i6AzbUYX/pbuilderrc_D48B --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.i6AzbUYX/b2 --logfile b2/build.log python-pbcore_2.1.2+dfsg-7.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, dh-sequence-sphinxdoc, python3-sphinx, python3-all, python3-setuptools, python3-h5py, python3-numpy, python3-pysam, python3-pytest, python3-uritools, python3-pytest-runner, python3-pytest-xdist, python3-pytest-cov, python3-biopython, python3-xmlschema, pylint, python3-coverage dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-uritools; however: Package python3-uritools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-xmlschema; however: Package python3-xmlschema is not installed. pbuilder-satisfydepends-dummy depends on pylint; however: Package pylint is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsub-override-perl{a} libsz2{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pylint{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-astroid{a} python3-babel{a} python3-biopython{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-coverage{a} python3-dill{a} python3-distutils{a} python3-docutils{a} python3-elementpath{a} python3-execnet{a} python3-freetype{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-isort{a} python3-jinja2{a} python3-lib2to3{a} python3-logilab-common{a} python3-markupsafe{a} python3-mccabe{a} python3-minimal{a} python3-mypy-extensions{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pysam{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-toml{a} python3-tomlkit{a} python3-typing-extensions{a} python3-uritools{a} python3-urllib3{a} python3-xmlschema{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 186 newly installed, 0 to remove and 0 not upgraded. Need to get 91.3 MB of archives. After unpacking 371 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 68 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 88 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.80.1-1 [1485 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 106 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 114 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 115 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-astroid all 3.0.2-2 [210 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 python3-isort all 5.6.4-1 [63.2 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get: 138 http://deb.debian.org/debian trixie/main amd64 python3-logilab-common all 2.0.0-1 [343 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 python3-dill all 0.3.8-1 [81.7 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 python3-mccabe all 0.7.0-1 [10.5 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.2.1-1 [16.0 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 python3-tomlkit all 0.12.4-1 [41.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 pylint all 3.0.3-1 [332 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 148 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 155 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.1.0-4 [1113 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 python3-coverage amd64 7.2.7+dfsg1-1+b1 [170 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 python3-roman all 3.3-3 [9880 B] Get: 162 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 python3-elementpath all 4.4.0-1 [146 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 python3-execnet all 2.1.1-1 [40.2 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.10.0-1+b3 [1400 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.6-2 [37.0 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 169 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 170 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.0+ds-1+b2 [4646 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-3 [239 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 179 http://deb.debian.org/debian trixie/main amd64 python3-pytest-xdist all 3.5.0-1 [42.1 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 7.2.6-6 [702 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.2.6-6 [552 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 python3-uritools all 4.0.1-1 [25.1 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 python3-xmlschema all 3.3.1-1 [237 kB] Fetched 91.3 MB in 2s (49.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20041 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21033 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. 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Setting up libcurl4t64:amd64 (8.7.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up sphinx-common (7.2.6-6) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-markupsafe (2.1.5-1) ... 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Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.0+ds-1+b2) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-all (3.11.8-1) ... Setting up python3-coverage (7.2.7+dfsg1-1+b1) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-reportlab (4.1.0-4) ... Setting up python3-astroid (3.0.2-2) ... Setting up python3-pytest-runner (2.11.1-4) ... Setting up dh-python (6.20240422) ... Setting up python3-pytest-xdist (3.5.0-1) ... Setting up python3-logilab-common (2.0.0-1) ... Setting up python3-h5py-serial (3.10.0-1+b3) ... Setting up python3-h5py (3.10.0-1) ... Setting up pylint (3.0.3-1) ... Processing triggers for libc-bin (2.38-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up docutils-common (0.20.1+dfsg-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-7_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 2.1.2+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' cd doc && rm -rf _templates _static _build searchindex.js objects.inv rm -rf build/;\ find . -name "*.egg-info" | xargs rm -rf;\ rm -rf dist/;\ find . -name "*.pyc" | xargs rm -f; rm -f nosetests.xml make[2]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' find . -name __pycache__ | xargs -r rm -rf make[1]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_auto_build I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore copying pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore copying pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model copying pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model copying pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util copying pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util copying pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util copying pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util copying pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry copying pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry copying pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets running egg_info creating pbcore.egg-info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt writing manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' warning: no directories found matching 'bin' adding license file 'LICENSE' writing manifest file 'pbcore.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.chemistry.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.chemistry.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.chemistry.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.chemistry.resources' to be distributed and are already explicitly excluding 'pbcore.chemistry.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources copying pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources copying pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore copying pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore copying pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/model copying pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/model copying pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/model creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util copying pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util copying pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util copying pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util copying pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io copying pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry copying pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry copying pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align copying pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' warning: no directories found matching 'bin' adding license file 'LICENSE' writing manifest file 'pbcore.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.chemistry.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.chemistry.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.chemistry.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.chemistry.resources' to be distributed and are already explicitly excluding 'pbcore.chemistry.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/resources copying pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/resources copying pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data copying pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets PYTHONPATH=/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build /usr/bin/make doc make[2]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' sphinx-apidoc -o doc/ pbcore/ && cd doc/ && make html make[3]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg/doc' sphinx-apidoc -o . -d 4 ../pbcore/ sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v7.2.6 making output directory... done WARNING: The pre-Sphinx 1.0 'intersphinx_mapping' format is deprecated and will be removed in Sphinx 8. Update to the current format as described in the documentation. Hint: "intersphinx_mapping = {'': ('http://docs.python.org/', None)}".https://www.sphinx-doc.org/en/master/usage/extensions/intersphinx.html#confval-intersphinx_mapping loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 11 source files that are out of date updating environment: [new config] 11 added, 0 changed, 0 removed reading sources... [ 9%] index reading sources... [ 18%] modules reading sources... [ 27%] pbcore reading sources... [ 36%] pbcore.chemistry reading sources... [ 45%] pbcore.data reading sources... [ 55%] pbcore.data.datasets reading sources... [ 64%] pbcore.io reading sources... [ 73%] pbcore.io.align reading sources... [ 82%] pbcore.io.dataset reading sources... [ 91%] pbcore.model reading sources... [100%] pbcore.util /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/pbcore.rst:7: WARNING: toctree contains reference to nonexisting document 'pbcore.deprecated' /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetMembers.py:docstring of pbcore.io.dataset.DataSetMembers:47: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'Process' from module 'pbcore.util'; the following exception was raised: No module named 'pbcore.util.Process' looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/modules.rst: WARNING: document isn't included in any toctree /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/pbcore.data.datasets.rst: WARNING: document isn't included in any toctree /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/pbcore.io.align.rst: WARNING: document isn't included in any toctree /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/pbcore.io.dataset.rst: WARNING: document isn't included in any toctree done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 9%] index writing output... [ 18%] modules writing output... [ 27%] pbcore writing output... [ 36%] pbcore.chemistry writing output... [ 45%] pbcore.data writing output... [ 55%] pbcore.data.datasets writing output... [ 64%] pbcore.io writing output... [ 73%] pbcore.io.align writing output... [ 82%] pbcore.io.dataset writing output... [ 91%] pbcore.model writing output... [100%] pbcore.util WARNING: dot command 'dot' cannot be run (needed for graphviz output), check the graphviz_dot setting generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 10 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[3]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg/doc' make[2]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' # we need to exclude tests requiring pbtestdata which is not packaged mkdir -p /tmp/tests_avoid mv `grep -l pbtestdata tests/*.py` /tmp/tests_avoid # for whatever reason this test is failing as well - just skip it for the moment mv tests/test_pbdataset_filters.py /tmp/tests_avoid PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} setup.py test" \ dh_auto_test I: pybuild base:311: python3.12 setup.py test /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running pytest /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. /usr/lib/python3/dist-packages/setuptools/command/test.py:193: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! ir_d = dist.fetch_build_eggs(dist.install_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! tr_d = dist.fetch_build_eggs(dist.tests_require or []) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! er_d = dist.fetch_build_eggs( WARNING: The wheel package is not available. running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' warning: no directories found matching 'bin' adding license file 'LICENSE' writing manifest file 'pbcore.egg-info/SOURCES.txt' running build_ext ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pbcore-2.1.2+dfsg configfile: pytest.ini plugins: cov-5.0.0, xdist-3.5.0 created: 42/42 workers 42 workers [140 items] scheduling tests via LoadScopeScheduling tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_io_FofnIO.py::test_simple tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers [gw21] [ 0%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations [gw12] [ 1%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple tests/test_pbcore_io_FofnIO.py::test_empty_lines tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs [gw18] [ 2%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw14] [ 2%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader [gw20] [ 3%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader [gw19] [ 4%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs [gw3] [ 5%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ [gw3] [ 5%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_BlasrIO.py::test_m4 [gw12] [ 6%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines [gw24] [ 7%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw16] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString [gw3] [ 8%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 [gw17] [ 9%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 [gw22] [ 10%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 [gw3] [ 10%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 [gw11] [ 11%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 [gw11] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 [gw15] [ 12%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 [gw3] [ 13%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbcore_io_FofnIO.py::test_absolutifying tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 [gw11] [ 14%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy [gw24] [ 15%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy [gw3] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq [gw3] [ 16%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted [gw21] [ 17%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range [gw17] [ 17%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 [gw12] [ 18%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support [gw28] [ 19%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping [gw29] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping [gw3] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal tests/test_dataset_run_split.py::test [gw23] [ 21%] SKIPPED tests/test_dataset_run_split.py::test [gw16] [ 22%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw20] [ 22%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw10] [ 23%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbcore_io_BlasrIO.py::test_m5 [gw15] [ 24%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 [gw33] [ 25%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 [gw2] [ 25%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation [gw2] [ 26%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation [gw1] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation [gw1] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation [gw18] [ 28%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd [gw22] [ 29%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd [gw19] [ 30%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii [gw10] [ 30%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire [gw10] [ 31%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index [gw5] [ 32%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement [gw5] [ 32%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement [gw5] [ 33%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac [gw5] [ 34%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error [gw10] [ 35%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index [gw5] [ 35%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error [gw26] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range [gw9] [ 37%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype [gw9] [ 37%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix [gw7] [ 38%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification [gw7] [ 39%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString [gw7] [ 40%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get [gw7] [ 40%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get [gw25] [ 41%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName [gw2] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead [gw2] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead [gw2] [ 43%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference [gw2] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference [gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName [gw1] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead [gw1] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead [gw1] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference [gw1] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw1] [ 48%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV [gw13] [ 49%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names [gw13] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names [gw31] [ 50%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted [gw6] [ 51%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName [gw6] [ 52%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById [gw6] [ 52%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition [gw6] [ 53%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice [gw14] [ 54%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam [gw30] [ 55%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam [gw8] [ 55%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted [gw8] [ 56%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff [gw8] [ 57%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file [gw8] [ 57%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties [gw27] [ 58%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties [gw9] [ 59%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw9] [ 60%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw6] [ 60%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error [gw5] [ 61%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error [gw4] [ 62%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ [gw4] [ 62%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString [gw4] [ 63%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 [gw4] [ 64%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 [gw4] [ 65%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len [gw4] [ 65%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq [gw4] [ 66%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal [gw4] [ 67%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal [gw1] [ 67%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript [gw1] [ 68%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript [gw2] [ 69%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript [gw2] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments [gw0] [ 70%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split [gw6] [ 71%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw6] [ 72%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw2] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments [gw1] [ 73%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange [gw2] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable [gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry [gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion [gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore [gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default [gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw2] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw1] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable [gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry [gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV [gw1] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV [gw0] [ 82%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers [gw1] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts [gw1] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName [gw1] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam [gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity [gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw1] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw0] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws [gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws [gw0] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters [gw0] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters [gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split [gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references [gw0] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter [gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit [gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks [gw0] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split [gw0] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows [gw0] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split [gw0] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name [gw0] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split [gw0] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded [gw0] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases [gw0] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks [gw0] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups [gw0] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== pbcore/__init__.py:1: 42 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: 42 warnings /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) tests/test_pbcore_io_FastqIO.py: 11 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/FastqIO.py:239: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return (np.clip(a, 0, 93).astype(np.uint8) + 33).tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 3 warnings tests/test_pbdataset_split.py: 16 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/PacBioBamIndex.py:159: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) ntId = int(peek("u4", 1)) tests/test_pbdataset_utils.py: 10 warnings tests/test_pbdataset_split.py: 249 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/dataset/utils.py:24: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). time = datetime.datetime.utcnow().strftime("%y%m%d_%H%M%S%f")[:-3] tests/test_pbcore_extract_bam_sequence.py: 1 warning tests/test_pbcore_io_AlnFileReaders.py: 118 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return _gusfieldTrans[uc].tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 28 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:583: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return r.tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 20 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return y.tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 14 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:535: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of -1 to uint8 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows). gapCode = data.dtype.type(-1) tests/test_pbdataset_split.py: 12 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/_BamSupport.py:66: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of 3379013067 to int32 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows). return np.int32(int(rgIdString.split("/")[0], 16)) tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/_BamSupport.py:66: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of 3844501414 to int32 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows). return np.int32(int(rgIdString.split("/")[0], 16)) tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/dataset/utils.py:30: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). return datetime.datetime.utcnow().strftime("%Y-%m-%dT%H:%M:%S%f")[:-6] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /build/reproducible-path/python-pbcore-2.1.2+dfsg/nosetests.xml - ---------- coverage: platform linux, python 3.12.3-final-0 ----------- Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= 0.28s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks 0.22s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split 0.17s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize 0.13s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange 0.12s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split 0.12s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange 0.11s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split 0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws 0.05s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed 0.04s setup tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties 0.04s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid 0.04s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations 0.04s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations 0.04s setup tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs 0.04s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration 0.04s call tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str 0.04s call tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse 0.04s call tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ 0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows 0.03s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency ================ 122 passed, 18 skipped, 576 warnings in 6.01s ================= I: pybuild base:311: python3.11 setup.py test /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running pytest /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. /usr/lib/python3/dist-packages/setuptools/command/test.py:193: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! ir_d = dist.fetch_build_eggs(dist.install_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! tr_d = dist.fetch_build_eggs(dist.tests_require or []) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! er_d = dist.fetch_build_eggs( WARNING: The wheel package is not available. running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' warning: no directories found matching 'bin' adding license file 'LICENSE' writing manifest file 'pbcore.egg-info/SOURCES.txt' running build_ext ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pbcore-2.1.2+dfsg configfile: pytest.ini plugins: cov-5.0.0, xdist-3.5.0 created: 42/42 workers 42 workers [140 items] scheduling tests via LoadScopeScheduling tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta tests/test_pbcore_io_FofnIO.py::test_simple [gw4] [ 0%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs [gw12] [ 1%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers [gw13] [ 2%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_BlasrIO.py::test_m4 [gw16] [ 2%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 [gw11] [ 3%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple tests/test_pbcore_io_FofnIO.py::test_empty_lines [gw11] [ 4%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations [gw6] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification [gw5] [ 5%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement [gw5] [ 6%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement [gw5] [ 7%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ [gw4] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 [gw19] [ 8%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw9] [ 9%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted [gw22] [ 10%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations [gw15] [ 10%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties [gw3] [ 11%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ [gw3] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString [gw3] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString [gw9] [ 13%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff [gw20] [ 14%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers [gw4] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 [gw0] [ 15%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader [gw21] [ 16%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 [gw12] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac [gw5] [ 17%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error [gw5] [ 18%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 [gw17] [ 19%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 [gw0] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName [gw0] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName [gw18] [ 21%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs [gw7] [ 22%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName [gw7] [ 22%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById [gw7] [ 23%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition [gw7] [ 24%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice [gw7] [ 25%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 [gw3] [ 25%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 [gw3] [ 26%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len [gw3] [ 27%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len [gw23] [ 27%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw6] [ 28%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString [gw6] [ 29%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString [gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation [gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName [gw2] [ 31%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead [gw14] [ 32%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta [gw4] [ 32%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 [gw4] [ 33%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len [gw4] [ 34%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq [gw4] [ 35%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal [gw4] [ 35%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal [gw9] [ 36%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file [gw10] [ 37%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype [gw10] [ 37%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix [gw10] [ 38%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw10] [ 39%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw2] [ 40%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead [gw8] [ 40%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead [gw0] [ 41%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead [gw0] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference [gw0] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw0] [ 43%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get [gw6] [ 44%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq [gw3] [ 45%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal [gw3] [ 45%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal tests/test_pbcore_io_FofnIO.py::test_absolutifying [gw11] [ 46%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying [gw9] [ 47%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names [gw15] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error [gw5] [ 48%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 [gw12] [ 49%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 [gw7] [ 50%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw7] [ 50%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw8] [ 51%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire [gw8] [ 52%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 [gw17] [ 52%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii [gw18] [ 53%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd tests/test_pbcore_io_BlasrIO.py::test_m5 [gw16] [ 54%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw0] [ 55%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 [gw19] [ 55%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript [gw0] [ 56%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments [gw21] [ 57%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord tests/test_dataset_run_split.py::test [gw25] [ 57%] SKIPPED tests/test_dataset_run_split.py::test [gw13] [ 58%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable [gw14] [ 59%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ [gw20] [ 60%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ [gw0] [ 60%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy [gw23] [ 61%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range [gw22] [ 62%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd [gw8] [ 62%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement [gw26] [ 63%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam [gw2] [ 64%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference [gw2] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference [gw2] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV [gw2] [ 66%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript [gw2] [ 67%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping [gw31] [ 67%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam [gw32] [ 68%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 [gw29] [ 69%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange [gw27] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments [gw2] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange [gw28] [ 71%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support [gw30] [ 72%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted [gw24] [ 72%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support [gw1] [ 73%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws [gw0] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange [gw1] [ 75%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize [gw0] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable [gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable [gw0] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV [gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry [gw0] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV [gw2] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion [gw2] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore [gw2] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default [gw2] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw2] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw0] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts [gw0] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName [gw0] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam [gw0] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity [gw0] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw0] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw1] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws [gw1] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws [gw1] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters [gw1] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters [gw1] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split [gw1] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references [gw1] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter [gw1] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit [gw1] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks [gw1] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split [gw1] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows [gw1] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split [gw1] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name [gw1] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split [gw1] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded [gw1] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases [gw1] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks [gw1] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups [gw1] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== pbcore/__init__.py:1: 42 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: 42 warnings /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) tests/test_pbcore_io_FastqIO.py: 11 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/FastqIO.py:239: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return (np.clip(a, 0, 93).astype(np.uint8) + 33).tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 3 warnings tests/test_pbdataset_split.py: 16 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/PacBioBamIndex.py:159: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) ntId = int(peek("u4", 1)) tests/test_pbcore_io_AlnFileReaders.py: 28 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:583: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return r.tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 20 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return y.tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 14 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:535: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of -1 to uint8 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows). gapCode = data.dtype.type(-1) tests/test_pbcore_io_AlnFileReaders.py: 118 warnings tests/test_pbcore_extract_bam_sequence.py: 1 warning /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return _gusfieldTrans[uc].tostring().decode("ascii") tests/test_pbdataset_split.py: 12 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/_BamSupport.py:66: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of 3379013067 to int32 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows). return np.int32(int(rgIdString.split("/")[0], 16)) tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name /build/reproducible-path/python-pbcore-2.1.2+dfsg/pbcore/io/align/_BamSupport.py:66: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of 3844501414 to int32 will fail in the future. For the old behavior, usually: np.array(value).astype(dtype) will give the desired result (the cast overflows). return np.int32(int(rgIdString.split("/")[0], 16)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /build/reproducible-path/python-pbcore-2.1.2+dfsg/nosetests.xml - ---------- coverage: platform linux, python 3.11.9-final-0 ----------- Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= 0.30s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split 0.30s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks 0.17s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize 0.14s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split 0.13s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange 0.13s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange 0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws 0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split 0.05s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed 0.05s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name 0.04s teardown tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed 0.03s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency 0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows 0.03s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations 0.03s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity 0.02s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta 0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers 0.02s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations 0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName 0.01s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid ================ 122 passed, 18 skipped, 315 warnings in 18.35s ================ # copy working test data into doc dir as user examples mkdir -p _tmp/usr/share/doc/python3-pbcore cp -a tests _tmp/usr/share/doc/python3-pbcore find _tmp -type d -name __pycache__ | xargs rm -rf # move back ignored tests mv /tmp/tests_avoid/* tests rmdir /tmp/tests_avoid make[1]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' warning: no directories found matching 'bin' adding license file 'LICENSE' writing manifest file 'pbcore.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.__pycache__' to be distributed and are already explicitly excluding 'pbcore.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.chemistry.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.chemistry.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.chemistry.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.chemistry.__pycache__' to be distributed and are already explicitly excluding 'pbcore.chemistry.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.chemistry.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.chemistry.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.chemistry.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.chemistry.resources' to be distributed and are already explicitly excluding 'pbcore.chemistry.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.data.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.data.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.data.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.data.__pycache__' to be distributed and are already explicitly excluding 'pbcore.data.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.data.datasets.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.data.datasets.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.data.datasets.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.data.datasets.__pycache__' to be distributed and are already explicitly excluding 'pbcore.data.datasets.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.io.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.io.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.io.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.io.__pycache__' to be distributed and are already explicitly excluding 'pbcore.io.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.io.align.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.io.align.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.io.align.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.io.align.__pycache__' to be distributed and are already explicitly excluding 'pbcore.io.align.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.io.dataset.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.io.dataset.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.io.dataset.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.io.dataset.__pycache__' to be distributed and are already explicitly excluding 'pbcore.io.dataset.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.util.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.util.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.util.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.util.__pycache__' to be distributed and are already explicitly excluding 'pbcore.util.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/sequence.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/decorators.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/decorators.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/statistics.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastqIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastqIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FofnIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FofnIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/GffIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/GffIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/VcfIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/VcfIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/base.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/opener.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/opener.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/chemistry.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/chemistry.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__pycache__ copying pbcore/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__pycache__ copying pbcore/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamAlignment.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamAlignment.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BlasrIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BlasrIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/PacBioBamIndex.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/PacBioBamIndex.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_AlignmentMixin.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_AlignmentMixin.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_BamSupport.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_BamSupport.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetErrors.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetErrors.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMembers.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMembers.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetReader.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetReader.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetUtils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetUtils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetValidator.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetValidator.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetWriter.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetWriter.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/run_split.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/run_split.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__ copying pbcore/data/datasets/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__ copying pbcore/data/datasets/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__ running install_lib creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12 creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/statistics.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/decorators.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/decorators.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/opener.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/base.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/opener.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__/sequence.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/resources copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/resources copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/decorators.py to decorators.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/statistics.py to statistics.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/sequence.py to sequence.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/base.py to base.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BamAlignment.py to BamAlignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/VcfIO.py to VcfIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/_utils.py to _utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/opener.py to opener.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying pbcore.egg-info to /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore-2.2.0.egg-info Skipping SOURCES.txt running install_scripts Installing .open script to /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin I: pybuild pybuild:334: chmod -x /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore//usr/lib/python3.12/dist-packages/pbcore/data/datasets/*.xml I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' warning: no directories found matching 'bin' adding license file 'LICENSE' writing manifest file 'pbcore.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.__pycache__' to be distributed and are already explicitly excluding 'pbcore.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.chemistry.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.chemistry.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.chemistry.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.chemistry.__pycache__' to be distributed and are already explicitly excluding 'pbcore.chemistry.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.chemistry.resources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.chemistry.resources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.chemistry.resources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.chemistry.resources' to be distributed and are already explicitly excluding 'pbcore.chemistry.resources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.data.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.data.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.data.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.data.__pycache__' to be distributed and are already explicitly excluding 'pbcore.data.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.data.datasets.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.data.datasets.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.data.datasets.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.data.datasets.__pycache__' to be distributed and are already explicitly excluding 'pbcore.data.datasets.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.io.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.io.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.io.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.io.__pycache__' to be distributed and are already explicitly excluding 'pbcore.io.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.io.align.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.io.align.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.io.align.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.io.align.__pycache__' to be distributed and are already explicitly excluding 'pbcore.io.align.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.io.dataset.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.io.dataset.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.io.dataset.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.io.dataset.__pycache__' to be distributed and are already explicitly excluding 'pbcore.io.dataset.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pbcore.util.__pycache__' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pbcore.util.__pycache__' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pbcore.util.__pycache__' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pbcore.util.__pycache__' to be distributed and are already explicitly excluding 'pbcore.util.__pycache__' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pbcore/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/sequence.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__ copying pbcore/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/decorators.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/decorators.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/statistics.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__ copying pbcore/io/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastqIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastqIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FofnIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FofnIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/GffIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/GffIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/VcfIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/VcfIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/base.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/opener.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/opener.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__ copying pbcore/chemistry/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/chemistry.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/chemistry.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/__pycache__ copying pbcore/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/__pycache__ copying pbcore/io/align/__pycache__/BamAlignment.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamAlignment.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BlasrIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BlasrIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/PacBioBamIndex.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/PacBioBamIndex.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_AlignmentMixin.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_AlignmentMixin.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_BamSupport.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_BamSupport.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetErrors.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetErrors.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMembers.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMembers.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetReader.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetReader.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetUtils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetUtils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetValidator.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetValidator.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetWriter.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetWriter.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/run_split.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/run_split.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/data/datasets/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/__pycache__ copying pbcore/data/datasets/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/__pycache__ running install_lib creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11 creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/model copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/model copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/model creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/statistics.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/ToolRunner.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/decorators.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/__pycache__/decorators.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/opener.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/base.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/opener.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/__pycache__/sequence.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/resources copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/resources copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.11_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/decorators.py to decorators.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/util/statistics.py to statistics.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/sequence.py to sequence.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/base.py to base.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/BamAlignment.py to BamAlignment.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/VcfIO.py to VcfIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/_utils.py to _utils.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/opener.py to opener.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying pbcore.egg-info to /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.11/dist-packages/pbcore-2.2.0.egg-info Skipping SOURCES.txt running install_scripts Installing .open script to /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin I: pybuild pybuild:334: chmod -x /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore//usr/lib/python3.11/dist-packages/pbcore/data/datasets/*.xml debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_install mv /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin/.open /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/bin/pbopen rmdir /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python-pbcore-doc/usr/share/doc/python3-pbcore/html/_images/ make[1]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_installdocs -X _source make[1]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_sphinxdoc -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_installchangelogs CHANGELOG.org make[1]: Leaving directory '/build/reproducible-path/python-pbcore-2.1.2+dfsg' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pbcore-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pbcore-doc' in '../python-pbcore-doc_2.1.2+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbcore' in '../python3-pbcore_2.1.2+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pbcore_2.1.2+dfsg-7_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pbcore_2.1.2+dfsg-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2880032/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2880032 and its subdirectories I: Current time: Thu Jun 12 19:47:35 +14 2025 I: pbuilder-time-stamp: 1749707255