I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 10 23:40:08 +14 2025 I: pbuilder-time-stamp: 1765359608 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-gsd_3.3.0-1.dsc] I: copying [./python-gsd_3.3.0.orig.tar.gz] I: copying [./python-gsd_3.3.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jul 5 16:27:33 2024 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-gsd_3.3.0-1.dsc: no acceptable signature found dpkg-source: info: extracting python-gsd in python-gsd-3.3.0 dpkg-source: info: unpacking python-gsd_3.3.0.orig.tar.gz dpkg-source: info: unpacking python-gsd_3.3.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_local_scripts.patch dpkg-source: info: applying test_large_32bit.patch dpkg-source: info: applying doc_ignore_exceptions.patch dpkg-source: info: applying docs_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 10 09:40 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=0d77aa87574c47f59779808fade23221 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2363454 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jeTvDxrF/pbuilderrc_xhUj --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jeTvDxrF/b2 --logfile b2/build.log python-gsd_3.3.0-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3, dh-python, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-ipython, python3-numpy (>= 1:1.19.0~), python3-pytest, python3-sphinx, architecture-properties, architecture-is-little-endian, python3-doc, doxygen, furo, libjs-mathjax, python3-breathe, python-numpy-doc, python3-pandas, python3-sphinx-rtd-theme, python3-sphinx-copybutton dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1:1.19.0~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on architecture-properties; however: Package architecture-properties is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on furo; however: Package furo is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-breathe; however: Package python3-breathe is not installed. pbuilder-satisfydepends-dummy depends on python-numpy-doc; however: Package python-numpy-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-copybutton; however: Package python3-sphinx-copybutton is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-mathjax{a} furo{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack3{a} liblerc4{a} libllvm19{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-numpy-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-breathe{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-doc{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pexpect{a} python3-pkg-resources{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyproject-hooks{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-copybutton{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-stack-data{a} python3-toml{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wcwidth{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-doc{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-basic-ng{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-bottleneck python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 186 MB of archives. After unpacking 894 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-2 [105 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get: 38 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.11+dfsg-1 [2449 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b3 [7772 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.2-2 [26.0 MB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libclang-cpp19 amd64 1:19.1.2-2 [13.2 MB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libclang1-19 amd64 1:19.1.2-2 [7623 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b2 [5050 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b5 [307 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-soupsieve all 2.6-1 [38.3 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-bs4 all 4.12.3-3 [133 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 7.4.7-4 [731 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-roman all 4.2-1 [10.4 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.0-1 [118 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 sphinx-basic-ng all 1.0.0~beta2-1 [13.0 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 furo all 2024.08.06+dfsg-1 [62.8 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.4-2+b1 [40.5 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.4-2+b1 [64.2 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.10.0-1 [1884 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-2+b2 [350 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 librav1e0.7 amd64 0.7.1-7+b2 [936 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc2 amd64 2.2.1+dfsg-2 [2173 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0.1888.20240710-3+b1 [172 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.1.1-1 [117 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.19.1-1 [11.1 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.19.1-1 [14.9 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.19.1-1 [490 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b2 [178 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b2 [804 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b2 [393 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.4-2+b1 [42.8 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.4-2+b1 [685 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.4-2+b1 [193 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.4-2+b1 [198 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.14-1+b3 [200 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.4-2+b1 [616 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.3-2 [157 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-6 [836 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.6-1 [2147 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.6-1 [5127 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.6-1 [9952 B] Get: 186 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.12.6-1 [1064 B] Get: 187 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 python-numpy-doc all 1:1.26.4+ds-11 [9384 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 195 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.6-1 [506 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.6-1 [26.1 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.12.6-1 [1068 B] Get: 198 http://deb.debian.org/debian trixie/main amd64 python3-asttokens all 2.4.1-2 [20.5 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 python3-breathe all 4.35.0-3 [78.2 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 python3.12-doc all 3.12.6-1 [13.1 MB] Get: 203 http://deb.debian.org/debian trixie/main amd64 python3-doc all 3.12.6-1 [9884 B] Get: 204 http://deb.debian.org/debian trixie/main amd64 python3-executing all 2.1.0-0.1 [23.9 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 206 http://deb.debian.org/debian trixie/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 python3-pexpect all 4.9-3 [55.6 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 python3-prompt-toolkit all 3.0.48-1 [277 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [4389 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-copybutton all 0.5.2-2 [17.9 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1022 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 226 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [29.5 kB] Fetched 186 MB in 2s (91.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. 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Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-gsd-3.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-gsd_3.3.0-1_source.changes dpkg-buildpackage: info: source package python-gsd dpkg-buildpackage: info: source version 3.3.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-gsd-3.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-gsd-3.3.0' dh_clean rm -f gsd/fl.c || /bin/true rm -rf devdoc rm -rf gsd/test/.pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-gsd-3.3.0' debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd * Building wheel... Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/gsd copying gsd/pygsd.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/hoomd.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/version.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/__init__.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/pytest_plugin_validate.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/__main__.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/conftest.py -> build/lib.linux-x86_64-cpython-312/gsd creating build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_fl.py -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_hoomd.py -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_largefile.py -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/conftest.py -> build/lib.linux-x86_64-cpython-312/gsd/test running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' copying gsd/fl.c -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/fl.pyx -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/gsd.c -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/gsd.h -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/libgsd.pxd -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/test/pytest.ini -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.linux-x86_64-cpython-312/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/gsd x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c gsd/fl.c -o build/temp.linux-x86_64-cpython-312/gsd/fl.o x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c gsd/gsd.c -o build/temp.linux-x86_64-cpython-312/gsd/gsd.o gsd/gsd.c: In function 'gsd_expand_file_index': gsd/gsd.c:994:44: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 994 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ^~ gsd/gsd.c:1005:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1005 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c:1031:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1031 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c: In function 'gsd_flush_write_buffer': gsd/gsd.c:1119:46: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1119 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ^~ gsd/gsd.c: In function 'gsd_flush_name_buffer': gsd/gsd.c:1211:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1211 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ^~ gsd/gsd.c:1244:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1244 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ^~ gsd/gsd.c: In function 'gsd_initialize_handle': gsd/gsd.c:1507:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1507 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ^~ gsd/gsd.c: In function 'gsd_flush': gsd/gsd.c:1993:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1993 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ^~ gsd/gsd.c: In function 'gsd_write_chunk': gsd/gsd.c:2126:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2126 | if (bytes_written == -1 || bytes_written != size) | ^~ gsd/gsd.c: In function 'gsd_read_chunk': gsd/gsd.c:2287:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2287 | if (bytes_read == -1 || bytes_read != size) | ^~ gsd/gsd.c: In function 'gsd_upgrade': gsd/gsd.c:2471:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare] 2471 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ^~ gsd/gsd.c:2526:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2526 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ^~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.3.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/gsd/fl.o build/temp.linux-x86_64-cpython-312/gsd/gsd.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/gsd/fl.cpython-312-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/gsd.c -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/gsd.h -> build/bdist.linux-x86_64/wheel/./gsd creating build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_fl.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_hoomd.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/pytest.ini -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_gsd_v1.gsd -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_largefile.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/conftest.py -> build/bdist.linux-x86_64/wheel/./gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/pygsd.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/hoomd.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/fl.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/version.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/__init__.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/fl.pyx -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/fl.c -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/pytest_plugin_validate.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/__main__.py -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/libgsd.pxd -> build/bdist.linux-x86_64/wheel/./gsd copying build/lib.linux-x86_64-cpython-312/gsd/conftest.py -> build/bdist.linux-x86_64/wheel/./gsd running install_egg_info Copying gsd.egg-info to build/bdist.linux-x86_64/wheel/./gsd-3.3.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/gsd-3.3.0.dist-info/WHEEL creating '/build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd/.tmp-pos1l61x/gsd-3.3.0-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'gsd/__init__.py' adding 'gsd/__main__.py' adding 'gsd/conftest.py' adding 'gsd/fl.c' adding 'gsd/fl.cpython-312-x86_64-linux-gnu.so' adding 'gsd/fl.pyx' adding 'gsd/gsd.c' adding 'gsd/gsd.h' adding 'gsd/hoomd.py' adding 'gsd/libgsd.pxd' adding 'gsd/pygsd.py' adding 'gsd/pytest_plugin_validate.py' adding 'gsd/version.py' adding 'gsd/test/conftest.py' adding 'gsd/test/pytest.ini' adding 'gsd/test/test_fl.py' adding 'gsd/test/test_gsd_v1.gsd' adding 'gsd/test/test_hoomd.py' adding 'gsd/test/test_largefile.py' adding 'gsd-3.3.0.dist-info/LICENSE' adding 'gsd-3.3.0.dist-info/METADATA' adding 'gsd-3.3.0.dist-info/WHEEL' adding 'gsd-3.3.0.dist-info/entry_points.txt' adding 'gsd-3.3.0.dist-info/top_level.txt' adding 'gsd-3.3.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built gsd-3.3.0-cp312-cp312-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-gsd-3.3.0' doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 15 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'TCL_SUBST' at line 43 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 152 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 168 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 200 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 234 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 245 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 266 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 301 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 306 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 307 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 332 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Notice: Output directory 'devdoc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/python-gsd-3.3.0/gsd Searching for files in directory /build/reproducible-path/python-gsd-3.3.0/gsd/test Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/python-gsd-3.3.0/gsd/gsd.h... Parsing file /build/reproducible-path/python-gsd-3.3.0/gsd/gsd.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file gsd/gsd.h... Generating file documentation... Generating docs for file gsd/gsd.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound gsd_byte_buffer... Generating docs for compound gsd_handle... Generating docs for compound gsd_header... Generating docs for compound gsd_index_buffer... Generating docs for compound gsd_index_entry... Generating docs for compound gsd_name_buffer... Generating docs for compound gsd_name_id_map... Generating docs for compound gsd_name_id_pair... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class gsd_byte_buffer Generating XML output for class gsd_handle Generating XML output for class gsd_header Generating XML output for class gsd_index_buffer Generating XML output for class gsd_index_entry Generating XML output for class gsd_name_buffer Generating XML output for class gsd_name_id_map Generating XML output for class gsd_name_id_pair Generating XML output for file gsd.h Generate XML output for dir /build/reproducible-path/python-gsd-3.3.0/gsd/ Running plantuml with JAVA... type lookup cache used 139/65536 hits=400 misses=148 symbol lookup cache used 178/65536 hits=560 misses=178 finished... PYTHONPATH=/build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd/build READTHEDOCS=True sphinx-build -b html doc /build/reproducible-path/python-gsd-3.3.0/.pybuild/html # HTML generator Running Sphinx v7.4.7 loading translations [en]... done /usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx80Warning: Sphinx 8 will drop support for representing paths as strings. Use "pathlib.Path" or "os.fspath" instead. self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. loading intersphinx inventory 'python' from /usr/share/doc/python3/html/objects.inv... loading intersphinx inventory 'numpy' from /usr/share/doc/python-numpy/html/objects.inv... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 22 source files that are out of date updating environment: [new config] 22 added, 0 changed, 0 removed reading sources... [ 5%] c-api reading sources... [ 9%] changes reading sources... [ 14%] cli reading sources... [ 18%] community reading sources... [ 23%] contributing reading sources... [ 27%] credits reading sources... [ 32%] file-layer reading sources... [ 36%] fl-examples /usr/lib/python3/dist-packages/IPython/paths.py:69: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 41%] hoomd-examples /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms implicit data copy when writing chunk: log/invalid /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 45%] index reading sources... [ 50%] indices reading sources... [ 55%] installation reading sources... [ 59%] license reading sources... [ 64%] python-api reading sources... [ 68%] python-module-gsd.fl /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 73%] python-module-gsd.hoomd /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 77%] python-module-gsd.pygsd reading sources... [ 82%] python-module-gsd.version reading sources... [ 86%] schema-hoomd reading sources... [ 91%] shapes reading sources... [ 95%] specification reading sources... [100%] style /build/reproducible-path/python-gsd-3.3.0/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ /build/reproducible-path/python-gsd-3.3.0/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ docstring of gsd.fl.GSDFile.chunk_exists:13: ERROR: Error in "highlight" directive: no content permitted. .. highlight:: python with gsd.fl.open(name='file.gsd', mode='w', application="My application", schema="My Schema", schema_version=[1,0]) as f: f.write_chunk(name='chunk1', data=numpy.array([1,2,3,4], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[5,6],[7,8]], dtype=numpy.float32)) f.end_frame() f.write_chunk(name='chunk1', data=numpy.array([9,10,11,12], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[13,14],[15,16]], dtype=numpy.float32)) f.end_frame() f = gsd.fl.open(name='file.gsd', mode='r', application="My application", schema="My Schema", schema_version=[1,0]) f.chunk_exists(frame=0, name='chunk1') f.chunk_exists(frame=0, name='chunk2') f.chunk_exists(frame=0, name='chunk3') f.chunk_exists(frame=10, name='chunk1') f.close() docstring of gsd.fl.GSDFile.truncate:10: WARNING: Block quote ends without a blank line; unexpected unindent. docstring of gsd.fl.GSDFile.truncate:14: WARNING: Definition list ends without a blank line; unexpected unindent. docstring of gsd.fl.GSDFile.truncate:19: WARNING: Definition list ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done copying assets: done writing output... [ 5%] c-api writing output... [ 9%] changes writing output... [ 14%] cli writing output... [ 18%] community writing output... [ 23%] contributing writing output... [ 27%] credits writing output... [ 32%] file-layer writing output... [ 36%] fl-examples writing output... [ 41%] hoomd-examples writing output... [ 45%] index writing output... [ 50%] indices writing output... [ 55%] installation writing output... [ 59%] license writing output... [ 64%] python-api writing output... [ 68%] python-module-gsd.fl writing output... [ 73%] python-module-gsd.hoomd writing output... [ 77%] python-module-gsd.pygsd writing output... [ 82%] python-module-gsd.version writing output... [ 86%] schema-hoomd writing output... [ 91%] shapes writing output... [ 95%] specification writing output... [100%] style /build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:13: WARNING: 'any' reference target not found: hoomd.State /build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:11: WARNING: 'any' reference target not found: hoomd.State /build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:11: WARNING: 'any' reference target not found: hoomd.State /build/reproducible-path/python-gsd-3.3.0/doc/schema-hoomd.rst:21: WARNING: 'any' reference target not found: hoomd.State generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 10 warnings. The HTML pages are in ../../build/reproducible-path/python-gsd-3.3.0/.pybuild/html. make[1]: Leaving directory '/build/reproducible-path/python-gsd-3.3.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-gsd-3.3.0/.pybuild/cpython3_3.12_gsd/build; python3.12 -m pytest /build/reproducible-path/python-gsd-3.3.0/gsd/test ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-gsd-3.3.0/gsd/test configfile: pytest.ini plugins: typeguard-4.4.1 collected 133 items ../../../gsd/test/test_fl.py ........................................... [ 32%] ..................................... [ 60%] ../../../gsd/test/test_hoomd.py ........................................ [ 90%] .......... [ 97%] ../../../gsd/test/test_largefile.py ... [100%] =============================== warnings summary =============================== ../../../gsd/test/test_largefile.py:15 /build/reproducible-path/python-gsd-3.3.0/gsd/test/test_largefile.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.validate - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.validate() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 133 passed, 1 warning in 67.72s (0:01:07) =================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-gsd-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/copybutton.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/copybutton_funcs.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-gsd-doc/usr/share/doc/python-gsd-doc/html/_static/clipboard.min.js dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-gsd-3.3.0' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/python-gsd-3.3.0' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-gsd' in '../python3-gsd_3.3.0-1_amd64.deb'. dpkg-deb: building package 'python3-gsd-dbgsym' in '../python3-gsd-dbgsym_3.3.0-1_amd64.deb'. dpkg-deb: building package 'python-gsd-doc' in '../python-gsd-doc_3.3.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-gsd_3.3.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-gsd_3.3.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-gsd-3.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2363454/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2363454 and its subdirectories I: Current time: Wed Dec 10 23:46:11 +14 2025 I: pbuilder-time-stamp: 1765359971