I: pbuilder: network access will be disabled during build I: Current time: Wed May 1 13:00:01 +14 2024 I: pbuilder-time-stamp: 1714518001 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-gsd_3.0.1-3.dsc] I: copying [./python-gsd_3.0.1.orig.tar.gz] I: copying [./python-gsd_3.0.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 2 12:42:29 2023 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-gsd_3.0.1-3.dsc: no acceptable signature found dpkg-source: info: extracting python-gsd in python-gsd-3.0.1 dpkg-source: info: unpacking python-gsd_3.0.1.orig.tar.gz dpkg-source: info: unpacking python-gsd_3.0.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying docs_local_scripts.patch dpkg-source: info: applying test_large_32bit.patch dpkg-source: info: applying doc_ignore_exceptions.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 30 23:00 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=aed7a2461a3b4e7b8f60f0b0132089db LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3522469 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5LAnb0dv/pbuilderrc_KDkk --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5LAnb0dv/b2 --logfile b2/build.log python-gsd_3.0.1-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 22 12:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cython3, dh-python, pybuild-plugin-pyproject, python3-setuptools, python3-all-dev, python3-ipython, python3-numpy (<< 1:2), python3-sphinx, architecture-properties, architecture-is-little-endian, python3-doc, doxygen, furo, libjs-mathjax, python3-breathe, python3-pandas, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19901 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (<< 1:2); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on architecture-properties; however: Package architecture-properties is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on python3-doc; however: Package python3-doc is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on furo; however: Package furo is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-breathe; however: Package python3-breathe is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libclang-cpp16t64{a} libclang1-16t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libicu72{a} libjs-jquery{a} libjs-mathjax{a} libjs-underscore{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} python3-doc{a} python3.11-doc{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 93.8 MB of archives. After unpacking 456 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: cython3 but it is not installable Depends: dh-python but it is not installable Depends: pybuild-plugin-pyproject but it is not installable Depends: python3-setuptools but it is not installable Depends: python3-all-dev but it is not installable Depends: python3-ipython but it is not installable Depends: python3-numpy (< 1:2) but it is not installable Depends: python3-sphinx but it is not installable Depends: furo but it is not installable Depends: python3-breathe but it is not installable Depends: python3-pandas but it is not installable Depends: python3-sphinx-rtd-theme but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libdb5.3 [5.3.28+dfsg2-4+b1 (now)] 2) libssl3 [3.1.5-1 (now)] Install the following packages: 3) ca-certificates [20240203 (testing)] 4) cython3 [3.0.10+dfsg-5 (testing)] 5) dh-python [6.20240422 (testing)] 6) docutils-common [0.20.1+dfsg-3 (testing)] 7) fontconfig [2.15.0-1.1 (testing)] 8) fontconfig-config [2.15.0-1.1 (testing)] 9) fonts-font-awesome [5.0.10+really4.7.0~dfsg-4.1 (testing)] 10) fonts-lato [2.015-1 (testing)] 11) fonts-urw-base35 [20200910-8 (testing)] 12) furo [2024.01.29+dfsg-1 (testing)] 13) graphviz [2.42.2-8 (testing)] 14) libabsl20230802 [20230802.1-4 (testing)] 15) libann0 [1.1.2+doc-9+b1 (testing)] 16) libaom3 [3.8.2-2 (testing)] 17) libavif16 [1.0.4-2 (testing)] 18) libblis4-serial [0.9.0-1+b2 (testing)] 19) libbrotli1 [1.1.0-2+b3 (testing)] 20) libcairo2 [1.18.0-1+b1 (testing)] 21) libcdt5 [2.42.2-8 (testing)] 22) libcgraph6 [2.42.2-8 (testing)] 23) libdatrie1 [0.2.13-3 (testing)] 24) libdav1d7 [1.4.1-1 (testing)] 25) libdb5.3t64 [5.3.28+dfsg2-7 (testing)] 26) libde265-0 [1.0.15-1+b1 (testing)] 27) libdeflate0 [1.20-1 (testing)] 28) libexpat1 [2.6.2-1 (testing)] 29) libexpat1-dev [2.6.2-1 (testing)] 30) libfontconfig1 [2.15.0-1.1 (testing)] 31) libfontenc1 [1:1.1.8-1 (testing)] 32) libfreetype6 [2.13.2+dfsg-1+b4 (testing)] 33) libfribidi0 [1.0.13-3+b1 (testing)] 34) libgav1-1 [0.19.0-2+b1 (testing)] 35) libgd3 [2.3.3-9+b3 (testing)] 36) libgfortran5 [14-20240330-1 (testing)] 37) libglib2.0-0t64 [2.78.4-7 (testing)] 38) libgraphite2-3 [1.3.14-2 (testing)] 39) libgts-0.7-5t64 [0.7.6+darcs121130-5.2 (testing)] 40) libgvc6 [2.42.2-8 (testing)] 41) libgvpr2 [2.42.2-8 (testing)] 42) libharfbuzz0b [8.3.0-2+b1 (testing)] 43) libheif-plugin-dav1d [1.17.6-1+b2 (testing)] 44) libheif-plugin-libde265 [1.17.6-1+b2 (testing)] 45) libheif1 [1.17.6-1+b2 (testing)] 46) libice6 [2:1.0.10-1+b1 (testing)] 47) libjbig0 [2.1-6.1+b1 (testing)] 48) libjpeg62-turbo [1:2.1.5-2+b2 (testing)] 49) libjs-sphinxdoc [7.2.6-6 (testing)] 50) libjson-perl [4.10000-1 (testing)] 51) liblab-gamut1 [2.42.2-8 (testing)] 52) liblapack3 [3.12.0-3 (testing)] 53) liblerc4 [4.0.0+ds-4+b1 (testing)] 54) libltdl7 [2.4.7-7+b1 (testing)] 55) libpango-1.0-0 [1.52.1+ds-1 (testing)] 56) libpangocairo-1.0-0 [1.52.1+ds-1 (testing)] 57) libpangoft2-1.0-0 [1.52.1+ds-1 (testing)] 58) libpathplan4 [2.42.2-8 (testing)] 59) libpixman-1-0 [0.42.2-1+b1 (testing)] 60) libpng16-16t64 [1.6.43-5 (testing)] 61) libpython3-all-dev [3.11.8-1 (testing)] 62) libpython3-dev [3.11.8-1 (testing)] 63) libpython3-stdlib [3.11.8-1 (testing)] 64) libpython3.11-dev [3.11.9-1 (testing)] 65) libpython3.11-minimal [3.11.9-1 (testing)] 66) libpython3.11-stdlib [3.11.9-1 (testing)] 67) libpython3.11t64 [3.11.9-1 (testing)] 68) libpython3.12-dev [3.12.3-1 (testing)] 69) libpython3.12-minimal [3.12.3-1 (testing)] 70) libpython3.12-stdlib [3.12.3-1 (testing)] 71) libpython3.12t64 [3.12.3-1 (testing)] 72) librav1e0 [0.7.1-2 (testing)] 73) libreadline8t64 [8.2-4 (testing)] 74) libsharpyuv0 [1.3.2-0.4+b1 (testing)] 75) libsm6 [2:1.2.3-1+b1 (testing)] 76) libssl3t64 [3.2.1-3 (testing)] 77) libsvtav1enc1d1 [1.7.0+dfsg-2+b1 (testing)] 78) libthai-data [0.1.29-2 (testing)] 79) libthai0 [0.1.29-2 (testing)] 80) libtiff6 [4.5.1+git230720-4 (testing)] 81) libwebp7 [1.3.2-0.4+b1 (testing)] 82) libx11-6 [2:1.8.7-1+b1 (testing)] 83) libx11-data [2:1.8.7-1 (testing)] 84) libxau6 [1:1.0.9-1+b1 (testing)] 85) libxaw7 [2:1.0.14-1+b2 (testing)] 86) libxcb-render0 [1.15-1 (testing)] 87) libxcb-shm0 [1.15-1 (testing)] 88) libxcb1 [1.15-1 (testing)] 89) libxdmcp6 [1:1.1.2-3+b1 (testing)] 90) libxext6 [2:1.3.4-1+b1 (testing)] 91) libxmu6 [2:1.1.3-3+b2 (testing)] 92) libxpm4 [1:3.5.17-1+b1 (testing)] 93) libxrender1 [1:0.9.10-1.1+b1 (testing)] 94) libxt6t64 [1:1.2.1-1.2 (testing)] 95) libyuv0 [0.0~git202401110.af6ac82-1 (testing)] 96) media-types [10.1.0 (testing)] 97) netbase [6.4 (testing)] 98) openssl [3.2.1-3 (testing)] 99) pybuild-plugin-pyproject [6.20240422 (testing)] 100) python-babel-localedata [2.14.0-1 (testing)] 101) python3 [3.11.8-1 (testing)] 102) python3-alabaster [0.7.12-1 (testing)] 103) python3-all [3.11.8-1 (testing)] 104) python3-all-dev [3.11.8-1 (testing)] 105) python3-asttokens [2.4.1-1 (testing)] 106) python3-babel [2.14.0-1 (testing)] 107) python3-breathe [4.35.0-3 (testing)] 108) python3-bs4 [4.12.3-1 (testing)] 109) python3-build [1.1.1-1 (testing)] 110) python3-certifi [2023.11.17-1 (testing)] 111) python3-chardet [5.2.0+dfsg-1 (testing)] 112) python3-charset-normalizer [3.3.2-1 (testing)] 113) python3-dateutil [2.9.0-2 (testing)] 114) python3-decorator [5.1.1-5 (testing)] 115) python3-dev [3.11.8-1 (testing)] 116) python3-distutils [3.12.3-1 (testing)] 117) python3-docutils [0.20.1+dfsg-3 (testing)] 118) python3-executing [2.0.1-0.1 (testing)] 119) python3-idna [3.6-2 (testing)] 120) python3-imagesize [1.4.1-1 (testing)] 121) python3-installer [0.7.0+dfsg1-3 (testing)] 122) python3-ipython [8.20.0-1 (testing)] 123) python3-jedi [0.19.1+ds1-1 (testing)] 124) python3-jinja2 [3.1.3-1 (testing)] 125) python3-lib2to3 [3.12.3-1 (testing)] 126) python3-markupsafe [2.1.5-1 (testing)] 127) python3-matplotlib-inline [0.1.6-2 (testing)] 128) python3-minimal [3.11.8-1 (testing)] 129) python3-numpy [1:1.24.2-2 (testing)] 130) python3-packaging [24.0-1 (testing)] 131) python3-pandas [2.1.4+dfsg-5 (testing)] 132) python3-pandas-lib [2.1.4+dfsg-5 (testing)] 133) python3-parso [0.8.3-1 (testing)] 134) python3-pexpect [4.9-2 (testing)] 135) python3-pkg-resources [68.1.2-2 (testing)] 136) python3-prompt-toolkit [3.0.43-1 (testing)] 137) python3-ptyprocess [0.7.0-5 (testing)] 138) python3-pure-eval [0.2.2-2 (testing)] 139) python3-pygments [2.17.2+dfsg-1 (testing)] 140) python3-pyproject-hooks [1.0.0-2 (testing)] 141) python3-requests [2.31.0+dfsg-1 (testing)] 142) python3-roman [3.3-3 (testing)] 143) python3-setuptools [68.1.2-2 (testing)] 144) python3-six [1.16.0-6 (testing)] 145) python3-snowballstemmer [2.2.0-4 (testing)] 146) python3-soupsieve [2.5-1 (testing)] 147) python3-sphinx [7.2.6-6 (testing)] 148) python3-sphinx-rtd-theme [2.0.0+dfsg-1 (testing)] 149) python3-sphinxcontrib.jquery [4.1-5 (testing)] 150) python3-stack-data [0.6.3-1 (testing)] 151) python3-toml [0.10.2-1 (testing)] 152) python3-traitlets [5.5.0-2 (testing)] 153) python3-typeshed [0.0~git20231111.6764465-3 (testing)] 154) python3-tz [2024.1-2 (testing)] 155) python3-urllib3 [1.26.18-2 (testing)] 156) python3-wcwidth [0.2.13+dfsg1-1 (testing)] 157) python3-wheel [0.43.0-1 (testing)] 158) python3.11 [3.11.9-1 (testing)] 159) python3.11-dev [3.11.9-1 (testing)] 160) python3.11-minimal [3.11.9-1 (testing)] 161) python3.12 [3.12.3-1 (testing)] 162) python3.12-dev [3.12.3-1 (testing)] 163) python3.12-minimal [3.12.3-1 (testing)] 164) readline-common [8.2-4 (testing)] 165) sgml-base [1.31 (testing)] 166) sphinx-basic-ng [1.0.0~beta2-1 (testing)] 167) sphinx-common [7.2.6-6 (testing)] 168) sphinx-rtd-theme-common [2.0.0+dfsg-1 (testing)] 169) tzdata [2024a-3 (testing)] 170) x11-common [1:7.7+23 (testing)] 171) xfonts-encodings [1:1.0.4-2.2 (testing)] 172) xfonts-utils [1:7.7+6 (testing)] 173) xml-core [0.19 (testing)] 174) zlib1g-dev [1:1.3.dfsg-3.1 (testing)] The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-font-awesome{a} fonts-lato{a} fonts-mathjax{a} fonts-urw-base35{a} furo{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblis4-serial{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp16t64{a} libclang1-16t64{a} libdatrie1{a} libdav1d7{a} libdb5.3t64{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblab-gamut1{a} liblapack3{a} liblerc4{a} libllvm16t64{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} librav1e0{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libssl3t64{a} libsub-override-perl{a} libsvtav1enc1d1{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-asttokens{a} python3-babel{a} python3-breathe{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-doc{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-installer{a} python3-ipython{a} python3-jedi{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parso{a} python3-pexpect{a} python3-pkg-resources{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyproject-hooks{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-stack-data{a} python3-toml{a} python3-traitlets{a} python3-typeshed{a} python3-tz{a} python3-urllib3{a} python3-wcwidth{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-doc{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-basic-ng{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages will be REMOVED: libdb5.3{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation2 javascript-common libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-bottleneck python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 217 newly installed, 2 to remove and 0 not upgraded. Need to get 206 MB of archives. After unpacking 911 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 architecture-properties amd64 0.1.1+b1 [1888 B] Get: 33 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 cython3 amd64 3.0.10+dfsg-5 [3571 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libllvm16t64 amd64 1:16.0.6-26 [23.1 MB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libclang-cpp16t64 amd64 1:16.0.6-26 [11.5 MB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libclang1-16t64 amd64 1:16.0.6-26 [6591 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 77 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-soupsieve all 2.5-1 [38.1 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-bs4 all 4.12.3-1 [133 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 7.2.6-6 [702 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-roman all 3.3-3 [9880 B] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.6-2 [37.0 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.2.6-6 [552 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 sphinx-basic-ng all 1.0.0~beta2-1 [13.0 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 furo all 2024.01.29+dfsg-1 [60.6 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.2-8 [39.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.2-8 [63.2 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.4.1-1 [547 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0~git202401110.af6ac82-1 [169 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.0.4-2 [106 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 125 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-1+b1 [531 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.2-8 [41.8 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.2-8 [683 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.2-8 [189 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.2-8 [198 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.2-8 [614 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libblis4-serial amd64 0.9.0-1+b2 [5282 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 177 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 181 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.1.1-1 [32.5 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20240422 [11.1 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 189 http://deb.debian.org/debian trixie/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 193 http://deb.debian.org/debian trixie/main amd64 python3-asttokens all 2.4.1-1 [20.6 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 python3-breathe all 4.35.0-3 [78.2 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 python3.11-doc all 3.11.9-1 [12.6 MB] Get: 198 http://deb.debian.org/debian trixie/main amd64 python3-doc all 3.11.8-1 [9528 B] Get: 199 http://deb.debian.org/debian trixie/main amd64 python3-executing all 2.0.1-0.1 [22.7 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.5.0-2 [90.7 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 205 http://deb.debian.org/debian trixie/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 python3-pexpect all 4.9-2 [55.5 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 python3-prompt-toolkit all 3.0.43-1 [276 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 python3-pure-eval all 0.2.2-2 [11.0 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-5 [7883 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1021 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 217 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 2.0.0+dfsg-1 [28.3 kB] Fetched 206 MB in 3s (61.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libperl5.38:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19894 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: libkrb5-3:amd64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19900 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19887 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19902 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21236 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.39.3-6_amd64.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.12.0-3_amd64.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../016-architecture-properties_0.1.1+b1_amd64.deb ... Unpacking architecture-properties:amd64 (0.1.1+b1) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20220109.1_all.deb ... 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Setting up libblis4-serial:amd64 (0.9.0-1+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blis-serial/libblis.so.4 to provide /usr/lib/x86_64-linux-gnu/libblis.so.4 (libblis.so.4-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/blis-serial/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libsvtav1enc1d1:amd64 (1.7.0+dfsg-2+b1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up librav1e0:amd64 (0.7.1-2) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 30 23:02:49 UTC 2024. Universal Time is now: Tue Apr 30 23:02:49 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.78.4-7) ... No schema files found: doing nothing. Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libpathplan4:amd64 (2.42.2-8) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up libltdl7:amd64 (2.4.7-7+b1) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up libfmt9:amd64 (9.1.0+ds1-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:amd64 (1.4.1-1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20230828-1+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libllvm16t64:amd64 (1:16.0.6-26) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up python3.11-doc (3.11.9-1) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libgvpr2:amd64 (2.42.2-8) ... Setting up groff-base (1.23.0-3+b1) ... Setting up xml-core (0.19) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up python3-doc (3.11.8-1) ... Setting up libavif16:amd64 (1.0.4-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libclang1-16t64 (1:16.0.6-26) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp16t64 (1:16.0.6-26) ... Setting up libpython3.12t64:amd64 (3.12.3-1) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up sphinx-common (7.2.6-6) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up libpython3-dev:amd64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:amd64 (3.12.3-1) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyproject-hooks (1.0.0-2) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up libpython3-all-dev:amd64 (3.11.8-1) ... Setting up python3-idna (3.6-2) ... Setting up python3.12-dev (3.12.3-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-traitlets (5.5.0-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-build (1.1.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-soupsieve (2.5-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-prompt-toolkit (3.0.43-1) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-pure-eval (0.2.2-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-all (3.11.8-1) ... Setting up python3-bs4 (4.12.3-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-pexpect (4.9-2) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up python3-jedi (0.19.1+ds1-1) ... Setting up pybuild-plugin-pyproject (6.20240422) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-5) ... Setting up libpango-1.0-0:amd64 (1.52.1+ds-1) ... Setting up libcairo2:amd64 (1.18.0-1+b1) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up python3-ipython (8.20.0-1) ... Setting up libpangoft2-1.0-0:amd64 (1.52.1+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.1+ds-1) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up libgvc6 (2.42.2-8) ... Setting up graphviz (2.42.2-8) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Setting up python3-breathe (4.35.0-3) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up sphinx-basic-ng (1.0.0~beta2-1) ... Setting up python3-sphinx-rtd-theme (2.0.0+dfsg-1) ... Setting up furo (2024.01.29+dfsg-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-gsd-3.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-gsd_3.0.1-3_source.changes dpkg-buildpackage: info: source package python-gsd dpkg-buildpackage: info: source version 3.0.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-gsd-3.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-gsd-3.0.1' dh_clean rm -f gsd/fl.c || /bin/true rm -rf devdoc make[1]: Leaving directory '/build/reproducible-path/python-gsd-3.0.1' debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.12_gsd * Building wheel... Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/gsd copying gsd/__init__.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/conftest.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/hoomd.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/pygsd.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/__main__.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/version.py -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/pytest_plugin_validate.py -> build/lib.linux-x86_64-cpython-312/gsd creating build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_fl.py -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/conftest.py -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_largefile.py -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_hoomd.py -> build/lib.linux-x86_64-cpython-312/gsd/test running egg_info creating gsd.egg-info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt writing manifest file 'gsd.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' copying gsd/fl.c -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/fl.pyx -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/gsd.c -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/gsd.h -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/libgsd.pxd -> build/lib.linux-x86_64-cpython-312/gsd copying gsd/test/pytest.ini -> build/lib.linux-x86_64-cpython-312/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.linux-x86_64-cpython-312/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/gsd x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c gsd/fl.c -o build/temp.linux-x86_64-cpython-312/gsd/fl.o x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c gsd/gsd.c -o build/temp.linux-x86_64-cpython-312/gsd/gsd.o gsd/gsd.c: In function 'gsd_expand_file_index': gsd/gsd.c:994:44: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 994 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ^~ gsd/gsd.c:1005:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1005 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c:1031:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1031 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c: In function 'gsd_flush_write_buffer': gsd/gsd.c:1119:46: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1119 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ^~ gsd/gsd.c: In function 'gsd_flush_name_buffer': gsd/gsd.c:1211:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1211 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ^~ gsd/gsd.c:1244:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1244 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ^~ gsd/gsd.c: In function 'gsd_initialize_handle': gsd/gsd.c:1507:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1507 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ^~ gsd/gsd.c: In function 'gsd_flush': gsd/gsd.c:1981:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1981 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ^~ gsd/gsd.c: In function 'gsd_write_chunk': gsd/gsd.c:2114:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2114 | if (bytes_written == -1 || bytes_written != size) | ^~ gsd/gsd.c: In function 'gsd_read_chunk': gsd/gsd.c:2275:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2275 | if (bytes_read == -1 || bytes_read != size) | ^~ gsd/gsd.c: In function 'gsd_upgrade': gsd/gsd.c:2459:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare] 2459 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ^~ gsd/gsd.c:2514:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2514 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ^~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/gsd/fl.o build/temp.linux-x86_64-cpython-312/gsd/gsd.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-312/gsd/fl.cpython-312-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/fl.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/__init__.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/conftest.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/hoomd.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/gsd.c -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/pygsd.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/gsd.h -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/libgsd.pxd -> build/bdist.linux-x86_64/wheel/gsd creating build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_fl.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_gsd_v1.gsd -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/conftest.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/pytest.ini -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_largefile.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/test/test_hoomd.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-312/gsd/__main__.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/fl.c -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/version.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/fl.pyx -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-312/gsd/pytest_plugin_validate.py -> build/bdist.linux-x86_64/wheel/gsd running install_egg_info Copying gsd.egg-info to build/bdist.linux-x86_64/wheel/gsd-3.0.1.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/gsd-3.0.1.dist-info/WHEEL creating '/build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.12_gsd/.tmp-ehnyp58c/gsd-3.0.1-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'gsd/__init__.py' adding 'gsd/__main__.py' adding 'gsd/conftest.py' adding 'gsd/fl.c' adding 'gsd/fl.cpython-312-x86_64-linux-gnu.so' adding 'gsd/fl.pyx' adding 'gsd/gsd.c' adding 'gsd/gsd.h' adding 'gsd/hoomd.py' adding 'gsd/libgsd.pxd' adding 'gsd/pygsd.py' adding 'gsd/pytest_plugin_validate.py' adding 'gsd/version.py' adding 'gsd/test/conftest.py' adding 'gsd/test/pytest.ini' adding 'gsd/test/test_fl.py' adding 'gsd/test/test_gsd_v1.gsd' adding 'gsd/test/test_hoomd.py' adding 'gsd/test/test_largefile.py' adding 'gsd-3.0.1.dist-info/LICENSE' adding 'gsd-3.0.1.dist-info/METADATA' adding 'gsd-3.0.1.dist-info/WHEEL' adding 'gsd-3.0.1.dist-info/entry_points.txt' adding 'gsd-3.0.1.dist-info/top_level.txt' adding 'gsd-3.0.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built gsd-3.0.1-cp312-cp312-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/gsd copying gsd/__init__.py -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/conftest.py -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/hoomd.py -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/pygsd.py -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/__main__.py -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/version.py -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/pytest_plugin_validate.py -> build/lib.linux-x86_64-cpython-311/gsd creating build/lib.linux-x86_64-cpython-311/gsd/test copying gsd/test/test_fl.py -> build/lib.linux-x86_64-cpython-311/gsd/test copying gsd/test/conftest.py -> build/lib.linux-x86_64-cpython-311/gsd/test copying gsd/test/test_largefile.py -> build/lib.linux-x86_64-cpython-311/gsd/test copying gsd/test/test_hoomd.py -> build/lib.linux-x86_64-cpython-311/gsd/test running egg_info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' copying gsd/fl.c -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/fl.pyx -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/gsd.c -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/gsd.h -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/libgsd.pxd -> build/lib.linux-x86_64-cpython-311/gsd copying gsd/test/pytest.ini -> build/lib.linux-x86_64-cpython-311/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.linux-x86_64-cpython-311/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/gsd x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c gsd/fl.c -o build/temp.linux-x86_64-cpython-311/gsd/fl.o x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c gsd/gsd.c -o build/temp.linux-x86_64-cpython-311/gsd/gsd.o gsd/gsd.c: In function 'gsd_expand_file_index': gsd/gsd.c:994:44: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 994 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ^~ gsd/gsd.c:1005:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1005 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c:1031:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1031 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ^~ gsd/gsd.c: In function 'gsd_flush_write_buffer': gsd/gsd.c:1119:46: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1119 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ^~ gsd/gsd.c: In function 'gsd_flush_name_buffer': gsd/gsd.c:1211:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1211 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ^~ gsd/gsd.c:1244:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1244 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ^~ gsd/gsd.c: In function 'gsd_initialize_handle': gsd/gsd.c:1507:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1507 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ^~ gsd/gsd.c: In function 'gsd_flush': gsd/gsd.c:1981:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 1981 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ^~ gsd/gsd.c: In function 'gsd_write_chunk': gsd/gsd.c:2114:50: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2114 | if (bytes_written == -1 || bytes_written != size) | ^~ gsd/gsd.c: In function 'gsd_read_chunk': gsd/gsd.c:2275:40: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2275 | if (bytes_read == -1 || bytes_read != size) | ^~ gsd/gsd.c: In function 'gsd_upgrade': gsd/gsd.c:2459:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare] 2459 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ^~ gsd/gsd.c:2514:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2514 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ^~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-gsd-3.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/gsd/fl.o build/temp.linux-x86_64-cpython-311/gsd/gsd.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-311/gsd/fl.cpython-311-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/__init__.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/conftest.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/hoomd.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/gsd.c -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/pygsd.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/gsd.h -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/fl.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/libgsd.pxd -> build/bdist.linux-x86_64/wheel/gsd creating build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/test/test_fl.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/test/test_gsd_v1.gsd -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/test/conftest.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/test/pytest.ini -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/test/test_largefile.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/test/test_hoomd.py -> build/bdist.linux-x86_64/wheel/gsd/test copying build/lib.linux-x86_64-cpython-311/gsd/__main__.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/fl.c -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/version.py -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/fl.pyx -> build/bdist.linux-x86_64/wheel/gsd copying build/lib.linux-x86_64-cpython-311/gsd/pytest_plugin_validate.py -> build/bdist.linux-x86_64/wheel/gsd running install_egg_info Copying gsd.egg-info to build/bdist.linux-x86_64/wheel/gsd-3.0.1.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/gsd-3.0.1.dist-info/WHEEL creating '/build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/.tmp-21a_3vni/gsd-3.0.1-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'gsd/__init__.py' adding 'gsd/__main__.py' adding 'gsd/conftest.py' adding 'gsd/fl.c' adding 'gsd/fl.cpython-311-x86_64-linux-gnu.so' adding 'gsd/fl.pyx' adding 'gsd/gsd.c' adding 'gsd/gsd.h' adding 'gsd/hoomd.py' adding 'gsd/libgsd.pxd' adding 'gsd/pygsd.py' adding 'gsd/pytest_plugin_validate.py' adding 'gsd/version.py' adding 'gsd/test/conftest.py' adding 'gsd/test/pytest.ini' adding 'gsd/test/test_fl.py' adding 'gsd/test/test_gsd_v1.gsd' adding 'gsd/test/test_hoomd.py' adding 'gsd/test/test_largefile.py' adding 'gsd-3.0.1.dist-info/LICENSE' adding 'gsd-3.0.1.dist-info/METADATA' adding 'gsd-3.0.1.dist-info/WHEEL' adding 'gsd-3.0.1.dist-info/entry_points.txt' adding 'gsd-3.0.1.dist-info/top_level.txt' adding 'gsd-3.0.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built gsd-3.0.1-cp311-cp311-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-gsd-3.0.1' PYTHONPATH=/build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build READTHEDOCS=True sphinx-build -b html doc /build/reproducible-path/python-gsd-3.0.1/.pybuild/html # HTML generator Running Sphinx v7.2.6 warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 15 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'TCL_SUBST' at line 43 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 152 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 168 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 200 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 232 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 234 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 245 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 266 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 301 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 306 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 307 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 332 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Notice: Output directory 'devdoc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/python-gsd-3.0.1/gsd Searching for files in directory /build/reproducible-path/python-gsd-3.0.1/gsd/test Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/python-gsd-3.0.1/gsd/gsd.h... Parsing file /build/reproducible-path/python-gsd-3.0.1/gsd/gsd.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file gsd/gsd.h... Generating file documentation... Generating docs for file gsd/gsd.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound gsd_byte_buffer... Generating docs for compound gsd_handle... Generating docs for compound gsd_header... Generating docs for compound gsd_index_buffer... Generating docs for compound gsd_index_entry... Generating docs for compound gsd_name_buffer... Generating docs for compound gsd_name_id_map... Generating docs for compound gsd_name_id_pair... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class gsd_byte_buffer Generating XML output for class gsd_handle Generating XML output for class gsd_header Generating XML output for class gsd_index_buffer Generating XML output for class gsd_index_entry Generating XML output for class gsd_name_buffer Generating XML output for class gsd_name_id_map Generating XML output for class gsd_name_id_pair Generating XML output for file gsd.h Generate XML output for dir /build/reproducible-path/python-gsd-3.0.1/gsd/ Running plantuml with JAVA... type lookup cache used 139/65536 hits=400 misses=148 symbol lookup cache used 178/65536 hits=560 misses=178 finished... /usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx80Warning: Sphinx 8 will drop support for representing paths as strings. Use "pathlib.Path" or "os.fspath" instead. self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done loading intersphinx inventory from /usr/share/doc/python3/html/objects.inv... building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 22 source files that are out of date updating environment: [new config] 22 added, 0 changed, 0 removed reading sources... [ 5%] c-api reading sources... [ 9%] changes reading sources... [ 14%] cli reading sources... [ 18%] community reading sources... [ 23%] contributing reading sources... [ 27%] credits reading sources... [ 32%] file-layer reading sources... [ 36%] fl-examples /usr/lib/python3/dist-packages/IPython/paths.py:69: UserWarning: IPython parent '/nonexistent/second-build' is not a writable location, using a temp directory. warn("IPython parent '{0}' is not a writable location," /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 41%] hoomd-examples /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy implicit data copy when writing chunk: log/value/potential_energy /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms implicit data copy when writing chunk: log/invalid /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 45%] index reading sources... [ 50%] indices reading sources... [ 55%] installation reading sources... [ 59%] license reading sources... [ 64%] python-api reading sources... [ 68%] python-module-gsd.fl /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 73%] python-module-gsd.hoomd /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:795: UserWarning: using bookmarks requires you to install the `pickleshare` library. self.shell.db['bookmarks'] = bkms /usr/lib/python3/dist-packages/IPython/core/magics/osm.py:761: UserWarning: using bookmarks requires you to install the `pickleshare` library. bkms = self.shell.db.get('bookmarks',{}) UsageError: %bookmark -d: Can't delete bookmark 'ipy_savedir' reading sources... [ 77%] python-module-gsd.pygsd reading sources... [ 82%] python-module-gsd.version reading sources... [ 86%] schema-hoomd reading sources... [ 91%] shapes reading sources... [ 95%] specification reading sources... [100%] style /build/reproducible-path/python-gsd-3.0.1/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ /build/reproducible-path/python-gsd-3.0.1/doc/c-api.rst:12: WARNING: Invalid C declaration: Expected identifier in nested name. [error at 0] ^ docstring of gsd.fl.GSDFile.chunk_exists:13: ERROR: Error in "highlight" directive: no content permitted. .. highlight:: python with gsd.fl.open(name='file.gsd', mode='w', application="My application", schema="My Schema", schema_version=[1,0]) as f: f.write_chunk(name='chunk1', data=numpy.array([1,2,3,4], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[5,6],[7,8]], dtype=numpy.float32)) f.end_frame() f.write_chunk(name='chunk1', data=numpy.array([9,10,11,12], dtype=numpy.float32)) f.write_chunk(name='chunk2', data=numpy.array([[13,14],[15,16]], dtype=numpy.float32)) f.end_frame() f = gsd.fl.open(name='file.gsd', mode='r', application="My application", schema="My Schema", schema_version=[1,0]) f.chunk_exists(frame=0, name='chunk1') f.chunk_exists(frame=0, name='chunk2') f.chunk_exists(frame=0, name='chunk3') f.chunk_exists(frame=10, name='chunk1') f.close() docstring of gsd.fl.GSDFile.truncate:10: WARNING: Block quote ends without a blank line; unexpected unindent. docstring of gsd.fl.GSDFile.truncate:14: WARNING: Definition list ends without a blank line; unexpected unindent. docstring of gsd.fl.GSDFile.truncate:19: WARNING: Definition list ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 5%] c-api writing output... [ 9%] changes writing output... [ 14%] cli writing output... [ 18%] community writing output... [ 23%] contributing writing output... [ 27%] credits writing output... [ 32%] file-layer writing output... [ 36%] fl-examples writing output... [ 41%] hoomd-examples writing output... [ 45%] index writing output... [ 50%] indices writing output... [ 55%] installation writing output... [ 59%] license writing output... [ 64%] python-api writing output... [ 68%] python-module-gsd.fl writing output... [ 73%] python-module-gsd.hoomd writing output... [ 77%] python-module-gsd.pygsd writing output... [ 82%] python-module-gsd.version writing output... [ 86%] schema-hoomd writing output... [ 91%] shapes writing output... [ 95%] specification writing output... [100%] style /tmp/tmpgh3d_bq1/docstring of gsd.fl.GSDFile.read_chunk:12: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:7: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:7: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:13: WARNING: 'any' reference target not found: hoomd.State /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:55: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData:63: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.BondData.validate:3: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConfigurationData.box:5: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConfigurationData.validate:3: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:5: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:5: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:11: WARNING: 'any' reference target not found: hoomd.State /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:24: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData:31: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ConstraintData.validate:3: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.Frame:59: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.Frame:59: WARNING: 'any' reference target not found: array_like /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:5: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:5: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:11: WARNING: 'any' reference target not found: hoomd.State /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:30: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:36: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:42: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:48: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:54: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:60: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:66: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:72: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:78: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:84: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData:90: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/hoomd.py:docstring of gsd.hoomd.ParticleData.validate:3: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build/gsd/pygsd.py:docstring of gsd.pygsd.GSDFile.read_chunk:9: WARNING: 'any' reference target not found: numpy.ndarray /build/reproducible-path/python-gsd-3.0.1/doc/schema-hoomd.rst:21: WARNING: 'any' reference target not found: hoomd.State generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 40 warnings. The HTML pages are in ../../build/reproducible-path/python-gsd-3.0.1/.pybuild/html. make[1]: Leaving directory '/build/reproducible-path/python-gsd-3.0.1' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.12_gsd/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/python-gsd-3.0.1/.pybuild/cpython3_3.11_gsd/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-gsd-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-gsd-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-gsd-doc' in '../python-gsd-doc_3.0.1-3_all.deb'. dpkg-deb: building package 'python3-gsd-dbgsym' in '../python3-gsd-dbgsym_3.0.1-3_amd64.deb'. dpkg-deb: building package 'python3-gsd' in '../python3-gsd_3.0.1-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-gsd_3.0.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-gsd_3.0.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-gsd-3.0.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3522469/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3522469 and its subdirectories I: Current time: Wed May 1 13:12:41 +14 2024 I: pbuilder-time-stamp: 1714518761