I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 20 06:20:40 +14 2025 I: pbuilder-time-stamp: 1750350040 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [octave-stk_2.8.1-1.dsc] I: copying [./octave-stk_2.8.1.orig.tar.gz] I: copying [./octave-stk_2.8.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jul 2 09:44:43 2023 gpgv: using RSA key 53951D95272E0C5B82BE8C4A2CECE9350ECEBE4A gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./octave-stk_2.8.1-1.dsc: no acceptable signature found dpkg-source: info: extracting octave-stk in octave-stk-2.8.1 dpkg-source: info: unpacking octave-stk_2.8.1.orig.tar.gz dpkg-source: info: unpacking octave-stk_2.8.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0003-Mark-expected-failure.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/753448/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 19 16:20 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/753448/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/753448/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=2ae058bce3be4eadbee2118c740cd8f7 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=753448 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gnlFWP02/pbuilderrc_XOMW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gnlFWP02/b2 --logfile b2/build.log octave-stk_2.8.1-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 17 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/753448/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-octave dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-octave; however: Package dh-sequence-octave is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cme{a} debhelper{a} dh-autoreconf{a} dh-octave{a} dh-octave-autopkgtest{a} dh-strip-nondeterminism{a} diffstat{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-freefont-otf{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} gnuplot-data{a} gnuplot-nox{a} gpg{a} gpgconf{a} groff-base{a} hdf5-helpers{a} ibverbs-providers{a} intltool-debian{a} iso-codes{a} libabsl20230802{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libaliased-perl{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libaom3{a} libapp-cmd-perl{a} libapt-pkg-perl{a} libarchive-zip-perl{a} libarpack2t64{a} libarray-intspan-perl{a} libasound2-data{a} libasound2t64{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libberkeleydb-perl{a} libblas-dev{a} libblas3{a} libboolean-perl{a} libbrotli1{a} libbsd0{a} libbtf2{a} libcairo2{a} libcamd3{a} libcapture-tiny-perl{a} libcarp-assert-more-perl{a} libcbor0.10{a} libccolamd3{a} libcgi-pm-perl{a} libcholmod5{a} libclass-c3-perl{a} libclass-data-inheritable-perl{a} libclass-load-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-choose-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libconfig-model-backend-yaml-perl{a} libconfig-model-dpkg-perl{a} libconfig-model-perl{a} libconfig-tiny-perl{a} libconst-fast-perl{a} libconvert-binhex-perl{a} libcpanel-json-xs-perl{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdata-dpath-perl{a} libdata-messagepack-perl{a} libdata-optlist-perl{a} libdata-section-perl{a} libdata-validate-domain-perl{a} libdata-validate-ip-perl{a} libdata-validate-uri-perl{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-size-perl{a} libdevel-stacktrace-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libemail-address-xs-perl{a} libencode-locale-perl{a} liberror-perl{a} libevdev2{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexception-class-perl{a} libexpat1{a} libexporter-lite-perl{a} libexporter-tiny-perl{a} libfabric1{a} libfeature-compat-class-perl{a} libfeature-compat-try-perl{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-basedir-perl{a} libfile-find-rule-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libflac12t64{a} libfltk-gl1.3t64{a} libfltk1.3t64{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd3{a} libgetopt-long-descriptive-perl{a} libgfortran-13-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libglib2.0-0t64{a} libglpk40{a} libglu1-mesa{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphicsmagick++-q16-12t64{a} libgraphicsmagick-q16-3t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhash-merge-perl{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhdf5-openmpi-103-1t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhtml-form-perl{a} libhtml-html5-entities-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tokeparser-simple-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhwloc-plugins{a} libhwloc15{a} libhwy1t64{a} libhypre-2.28.0{a} libibverbs1{a} libice6{a} libicu72{a} libimport-into-perl{a} libindirect-perl{a} libinput-bin{a} libinput10{a} libio-html-perl{a} libio-interactive-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libipc-run3-perl{a} libipc-system-simple-perl{a} libiterator-perl{a} libiterator-util-perl{a} libjack-jackd2-0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-maybexs-perl{a} libjson-perl{a} libjxl0.7{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblist-compare-perl{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} libllvm17t64{a} liblog-any-adapter-screen-perl{a} liblog-any-perl{a} liblog-log4perl-perl{a} libltdl7{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblz1{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libmailtools-perl{a} libmarkdown2{a} libmd4c0{a} libmetis5{a} libmime-tools-perl{a} libmldbm-perl{a} libmodule-implementation-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libmoox-aliases-perl{a} libmouse-perl{a} libmousex-nativetraits-perl{a} libmousex-strictconstructor-perl{a} libmp3lame0{a} libmpg123-0t64{a} libmro-compat-perl{a} libmtdev1t64{a} libmumps-5.6t64{a} libmunge2{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnet-domain-tld-perl{a} libnet-http-perl{a} libnet-ipv6addr-perl{a} libnet-netmask-perl{a} libnet-smtp-ssl-perl{a} libnet-ssleay-perl{a} libnetaddr-ip-perl{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libnumber-compare-perl{a} libobject-pad-perl{a} libogg0{a} libopengl0{a} libopenmpi3t64{a} libopus0{a} libpackage-stash-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparse-debcontrol-perl{a} libparse-recdescent-perl{a} libpath-iterator-rule-perl{a} libpath-tiny-perl{a} libpciaccess0{a} libpcre2-16-0{a} libperlio-gzip-perl{a} libperlio-utf8-strict-perl{a} libpetsc-real3.19t64{a} libpipeline1{a} libpixman-1-0{a} libpmix2t64{a} libpng16-16t64{a} libpod-constants-perl{a} libpod-parser-perl{a} libpod-pom-perl{a} libportaudio2{a} libproc-processtable-perl{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libpthread-stubs0-dev{a} libptscotch-7.0{a} libqhull-r8.0{a} libqrupdate1{a} libqscintilla2-qt5-15{a} libqscintilla2-qt5-l10n{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} librav1e0{a} librdmacm1t64{a} libreadline-dev{a} libreadline8t64{a} libregexp-common-perl{a} libregexp-pattern-license-perl{a} libregexp-pattern-perl{a} libregexp-wildcards-perl{a} librole-tiny-perl{a} librtmp1{a} libsamplerate0{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libsensors-config{a} libsensors5{a} libsereal-decoder-perl{a} libsereal-encoder-perl{a} libset-intspan-perl{a} libsharpyuv0{a} libsm6{a} libsndfile1{a} libsoftware-copyright-perl{a} libsoftware-license-perl{a} libsoftware-licensemoreutils-perl{a} libsort-versions-perl{a} libspqr4{a} libssh2-1t64{a} libssl-dev{a} libstrictures-perl{a} libstring-copyright-perl{a} libstring-escape-perl{a} libstring-license-perl{a} libstring-rewriteprefix-perl{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libsuitesparseconfig7{a} libsundials-ida6{a} libsundials-nvecparallel-petsc6{a} libsundials-sunlinsol3{a} libsundials-sunmatrix4{a} libsuperlu-dist8{a} libsuperlu6{a} libsvtav1enc1d1{a} libsyntax-keyword-try-perl{a} libsz2{a} libterm-readkey-perl{a} libtest-exception-perl{a} libtext-autoformat-perl{a} libtext-glob-perl{a} libtext-levenshtein-damerau-perl{a} libtext-levenshteinxs-perl{a} libtext-markdown-discount-perl{a} libtext-reform-perl{a} libtext-template-perl{a} libtext-unidecode-perl{a} libtext-xslate-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtime-duration-perl{a} libtime-moment-perl{a} libtimedate-perl{a} libtoml-tiny-perl{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtry-tiny-perl{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunicode-utf8-perl{a} liburi-perl{a} libvariable-magic-perl{a} libvorbis0a{a} libvorbisenc2{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpmux3{a} libwmflite-0.2-7{a} libwww-mechanize-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxnvctrl0{a} libxpm4{a} libxrender1{a} libxs-parse-keyword-perl{a} libxs-parse-sublike-perl{a} libxshmfence1{a} libxxf86vm1{a} libyaml-0-2{a} libyaml-libyaml-perl{a} libyaml-pp-perl{a} libyaml-tiny-perl{a} libyuv0{a} libz3-4{a} licensecheck{a} lintian{a} lzop{a} m4{a} man-db{a} mpi-default-bin{a} netbase{a} ocl-icd-libopencl1{a} octave{a} octave-common{a} octave-dev{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} patchutils{a} perl-openssl-defaults{a} plzip{a} po-debconf{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} unzip{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bash-completion curl dbus default-jre-headless epstool fonts-liberation fonts-urw-base35 ghostscript gnupg groff krb5-locales libarchive-cpio-perl libauthen-sasl-perl libblis4 libcgi-fast-perl libclass-c3-xs-perl libconfig-model-approx-perl libconfig-model-lcdproc-perl libconfig-model-openssh-perl libconfig-model-systemd-perl libconfig-model-tkui-perl libdata-dump-perl libfreezethaw-perl libfuse-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libipc-shareable-perl libjson-xs-perl libldap-common liblist-someutils-xs-perl liblog-dispatch-perl libltdl-dev libmail-sendmail-perl libmath-base85-perl libopenblas0 libpackage-stash-xs-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libre-engine-re2-perl libsasl2-modules libsocket6-perl libtie-ixhash-perl libtypes-serialiser-perl libxml-sax-expat-perl libxstring-perl lynx mesa-vulkan-drivers octave-doc pstoedit publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xauth xdg-user-dirs 0 packages upgraded, 536 newly installed, 0 to remove and 0 not upgraded. Need to get 235 MB of archives. After unpacking 916 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-1.1 [27.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.14.0-1+b2 [77.7 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.7p1-4 [965 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libdevel-callchecker-perl amd64 0.009-1 [15.9 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libparams-validate-perl amd64 1.31-2+b2 [63.7 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libgetopt-long-descriptive-perl all 0.111-1 [27.8 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libio-tiecombine-perl all 1.005-3 [10.8 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libmodule-pluggable-perl all 5.2-5 [23.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libstring-rewriteprefix-perl all 0.009-1 [7140 B] Get: 53 http://deb.debian.org/debian trixie/main amd64 libapp-cmd-perl all 0.336-1 [65.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libboolean-perl all 0.46-3 [9924 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libcarp-assert-more-perl all 2.4.0-1 [20.2 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libclone-choose-perl all 0.010-2 [8676 B] Get: 61 http://deb.debian.org/debian trixie/main amd64 libhash-merge-perl all 0.302-1 [14.7 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b1 [42.3 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libmousex-nativetraits-perl all 1.09-3 [53.5 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libmousex-strictconstructor-perl all 0.02-3 [5304 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libpod-pom-perl all 2.01-4 [65.0 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libregexp-common-perl all 2017060201-3 [175 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libyaml-tiny-perl all 1.74-1 [30.7 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libconfig-model-perl all 2.153-3 [448 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libyaml-pp-perl all 0.38.0-1 [109 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 cme all 1.040-1 [68.8 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 gnuplot-data all 6.0.0+dfsg1-3 [72.3 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 fonts-freefont-otf all 20211204+svn4273-2 [4328 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.4.1-1 [547 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0~git202401110.af6ac82-1 [169 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.0.4-3 [106 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 125 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.80.2-1 [1485 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [218 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [48.1 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [35.0 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 gnuplot-nox amd64 6.0.0+dfsg1-3 [916 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 dh-octave-autopkgtest all 1.8.0 [10.0 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libapt-pkg-perl amd64 0.1.40+b5 [66.9 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libarray-intspan-perl all 2.004-2 [25.7 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libconfig-model-backend-yaml-perl all 2.134-2 [10.8 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libexporter-lite-perl all 0.09-2 [10.7 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 171 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libparse-debcontrol-perl all 2.005-6 [21.6 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libsoftware-copyright-perl all 0.012-2 [18.0 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libdata-section-perl all 0.200008-1 [13.1 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libtext-template-perl all 1.61-1 [54.4 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libsoftware-license-perl all 0.104006-1 [116 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libsoftware-licensemoreutils-perl all 1.009-1 [22.0 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get: 188 http://deb.debian.org/debian trixie/main amd64 libtext-reform-perl all 1.20-5 [36.0 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libtext-autoformat-perl all 1.750000-2 [35.2 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libtext-levenshtein-damerau-perl all 0.41-3 [12.3 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libtoml-tiny-perl all 0.16-1 [23.4 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libindirect-perl amd64 0.39-2+b3 [27.1 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libxs-parse-keyword-perl amd64 0.42-1 [59.8 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libxs-parse-sublike-perl amd64 0.21-2+b2 [40.3 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libobject-pad-perl amd64 0.808-1+b2 [119 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libfeature-compat-class-perl all 0.06-1 [10.7 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libfeature-compat-try-perl all 0.05-1 [10.4 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 liblog-any-perl all 1.717-1 [78.9 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 liblog-any-adapter-screen-perl all 0.140-2 [13.3 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 203 http://deb.debian.org/debian trixie/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get: 209 http://deb.debian.org/debian trixie/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get: 210 http://deb.debian.org/debian trixie/main amd64 libpath-iterator-rule-perl all 1.015-2 [41.7 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 libpod-constants-perl all 0.19-2 [17.3 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 libset-intspan-perl all 1.19-3 [25.3 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libstring-copyright-perl all 0.003014-1 [23.4 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libstring-escape-perl all 2010.002-3 [18.7 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 libregexp-pattern-license-perl all 3.11.0-1 [94.8 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libregexp-pattern-perl all 0.2.14-2 [18.7 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libstring-license-perl all 0.0.9-2 [35.5 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 licensecheck all 3.3.9-1 [50.1 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 diffstat amd64 1.66-1 [34.0 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libassuan0 amd64 2.5.6-1+b1 [50.4 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 gpg amd64 2.2.40-3 [950 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libberkeleydb-perl amd64 0.64-2+b3 [121 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b3 [36.2 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get: 230 http://deb.debian.org/debian trixie/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b2 [128 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 233 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b3 [98.1 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libdevel-size-perl amd64 0.84-1 [23.9 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libemail-address-xs-perl amd64 1.05-1+b3 [29.3 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get: 267 http://deb.debian.org/debian trixie/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get: 275 http://deb.debian.org/debian trixie/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libdata-messagepack-perl amd64 1.02-1+b3 [32.5 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get: 282 http://deb.debian.org/debian trixie/main amd64 libcgi-pm-perl all 4.64-1 [217 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 286 http://deb.debian.org/debian trixie/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get: 289 http://deb.debian.org/debian trixie/main amd64 liblz1 amd64 1.15~pre1-1 [38.5 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 plzip amd64 1.11-1 [63.9 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 lzop amd64 1.04-2 [84.2 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 lintian all 2.117.0 [1052 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libconfig-model-dpkg-perl all 3.004 [173 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get: 300 http://deb.debian.org/debian trixie/main amd64 libmailtools-perl all 2.21-3 [88.6 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 libmime-tools-perl all 5.515-1 [203 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-1.1+b1 [104 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.7.0+dfsg-2 [37.9 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.7.0+dfsg-2 [36.0 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.7.0+dfsg-2 [623 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 314 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-5 [433 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.7.0+dfsg-2 [82.3 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-1+b2 [779 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-1+b2 [806 kB] Get: 323 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.1-1+b1 [36.2 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3+b1 [16.0 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libfltk1.3t64 amd64 1.3.8-6.1 [553 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get: 330 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 24.0.7-1 [36.4 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get: 341 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 342 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.280.0-1 [123 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 350 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 351 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] Get: 352 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 24.0.7-1 [8277 kB] Get: 353 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 24.0.7-1 [151 kB] Get: 354 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get: 355 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get: 356 http://deb.debian.org/debian trixie/main amd64 libfltk-gl1.3t64 amd64 1.3.8-6.1 [62.4 kB] Get: 357 http://deb.debian.org/debian trixie/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Get: 358 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 359 http://deb.debian.org/debian trixie/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get: 360 http://deb.debian.org/debian trixie/main amd64 libopengl0 amd64 1.7.0-1+b1 [31.1 kB] Get: 361 http://deb.debian.org/debian trixie/main amd64 libglu1-mesa amd64 9.0.2-1.1+b1 [180 kB] Get: 362 http://deb.debian.org/debian trixie/main amd64 libhwy1t64 amd64 1.0.7-8.1 [526 kB] Get: 363 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 364 http://deb.debian.org/debian trixie/main amd64 libjxl0.7 amd64 0.7.0-10.2+b3 [1068 kB] Get: 365 http://deb.debian.org/debian trixie/main amd64 libwmflite-0.2-7 amd64 0.2.13-1.1+b2 [75.4 kB] Get: 366 http://deb.debian.org/debian trixie/main amd64 libgraphicsmagick-q16-3t64 amd64 1.4+really1.3.43-1 [1200 kB] Get: 367 http://deb.debian.org/debian trixie/main amd64 libgraphicsmagick++-q16-12t64 amd64 1.4+really1.3.43-1 [118 kB] Get: 368 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get: 369 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 370 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 371 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 372 http://deb.debian.org/debian trixie/main amd64 libasound2-data all 1.2.11-1 [20.9 kB] Get: 373 http://deb.debian.org/debian trixie/main amd64 libasound2t64 amd64 1.2.11-1+b1 [369 kB] Get: 374 http://deb.debian.org/debian trixie/main amd64 libopus0 amd64 1.4-1+b1 [198 kB] Get: 375 http://deb.debian.org/debian trixie/main amd64 libsamplerate0 amd64 0.2.2-4+b1 [951 kB] Get: 376 http://deb.debian.org/debian trixie/main amd64 libjack-jackd2-0 amd64 1.9.21~dfsg-3+b3 [284 kB] Get: 377 http://deb.debian.org/debian trixie/main amd64 libportaudio2 amd64 19.6.0-1.2+b2 [64.8 kB] Get: 378 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 379 http://deb.debian.org/debian trixie/main amd64 libqrupdate1 amd64 1.1.2-4+b1 [38.4 kB] Get: 380 http://deb.debian.org/debian trixie/main amd64 libqscintilla2-qt5-l10n all 2.14.1+dfsg-1 [105 kB] Get: 381 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-4 [759 kB] Get: 382 http://deb.debian.org/debian trixie/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Get: 383 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 384 http://deb.debian.org/debian trixie/main amd64 libqt5core5t64 amd64 5.15.10+dfsg-7.2+b1 [1835 kB] Get: 385 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.22.0-2.1+b1 [33.0 kB] Get: 386 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 24.0.7-1 [40.9 kB] Get: 387 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] Get: 388 http://deb.debian.org/debian trixie/main amd64 libegl-mesa0 amd64 24.0.7-1 [119 kB] Get: 389 http://deb.debian.org/debian trixie/main amd64 libegl1 amd64 1.7.0-1+b1 [34.3 kB] Get: 390 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 391 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 392 http://deb.debian.org/debian trixie/main amd64 libevdev2 amd64 1.13.1+dfsg-1+b1 [32.6 kB] Get: 393 http://deb.debian.org/debian trixie/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [22.2 kB] Get: 394 http://deb.debian.org/debian trixie/main amd64 libgudev-1.0-0 amd64 238-5 [14.4 kB] Get: 395 http://deb.debian.org/debian trixie/main amd64 libwacom-common all 2.10.0-2 [62.5 kB] Get: 396 http://deb.debian.org/debian trixie/main amd64 libwacom9 amd64 2.10.0-2 [22.4 kB] Get: 397 http://deb.debian.org/debian trixie/main amd64 libinput-bin amd64 1.25.0-1+b2 [24.8 kB] Get: 398 http://deb.debian.org/debian trixie/main amd64 libinput10 amd64 1.25.0-1+b2 [128 kB] Get: 399 http://deb.debian.org/debian trixie/main amd64 libmd4c0 amd64 0.4.8-1+b1 [45.1 kB] Get: 400 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 401 http://deb.debian.org/debian trixie/main amd64 libqt5dbus5t64 amd64 5.15.10+dfsg-7.2+b1 [213 kB] Get: 402 http://deb.debian.org/debian trixie/main amd64 libqt5network5t64 amd64 5.15.10+dfsg-7.2+b1 [677 kB] Get: 403 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 404 http://deb.debian.org/debian trixie/main amd64 libxcb-icccm4 amd64 0.4.1-1.1+b1 [26.8 kB] Get: 405 http://deb.debian.org/debian trixie/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get: 406 http://deb.debian.org/debian trixie/main amd64 libxcb-image0 amd64 0.4.0-2+b1 [22.2 kB] Get: 407 http://deb.debian.org/debian trixie/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 408 http://deb.debian.org/debian trixie/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 409 http://deb.debian.org/debian trixie/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get: 410 http://deb.debian.org/debian trixie/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Get: 411 http://deb.debian.org/debian trixie/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Get: 412 http://deb.debian.org/debian trixie/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Get: 413 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.41-2 [795 kB] Get: 414 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] Get: 415 http://deb.debian.org/debian trixie/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1+b1 [16.2 kB] Get: 416 http://deb.debian.org/debian trixie/main amd64 libqt5gui5t64 amd64 5.15.10+dfsg-7.2+b1 [3444 kB] Get: 417 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 418 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 419 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 420 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get: 421 http://deb.debian.org/debian trixie/main amd64 libqt5widgets5t64 amd64 5.15.10+dfsg-7.2+b1 [2385 kB] Get: 422 http://deb.debian.org/debian trixie/main amd64 libqt5printsupport5t64 amd64 5.15.10+dfsg-7.2+b1 [204 kB] Get: 423 http://deb.debian.org/debian trixie/main amd64 libqscintilla2-qt5-15 amd64 2.14.1+dfsg-1+b2 [1118 kB] Get: 424 http://deb.debian.org/debian trixie/main amd64 libqt5sql5t64 amd64 5.15.10+dfsg-7.2+b1 [123 kB] Get: 425 http://deb.debian.org/debian trixie/main amd64 libqt5help5 amd64 5.15.10-7 [149 kB] Get: 426 http://deb.debian.org/debian trixie/main amd64 libqt5xml5t64 amd64 5.15.10+dfsg-7.2+b1 [123 kB] Get: 427 http://deb.debian.org/debian trixie/main amd64 libogg0 amd64 1.3.5-3+b1 [23.7 kB] Get: 428 http://deb.debian.org/debian trixie/main amd64 libflac12t64 amd64 1.4.3+ds-2.1 [200 kB] Get: 429 http://deb.debian.org/debian trixie/main amd64 libmp3lame0 amd64 3.100-6+b2 [361 kB] Get: 430 http://deb.debian.org/debian trixie/main amd64 libmpg123-0t64 amd64 1.32.6-3 [148 kB] Get: 431 http://deb.debian.org/debian trixie/main amd64 libvorbis0a amd64 1.3.7-2 [89.7 kB] Get: 432 http://deb.debian.org/debian trixie/main amd64 libvorbisenc2 amd64 1.3.7-2 [75.9 kB] Get: 433 http://deb.debian.org/debian trixie/main amd64 libsndfile1 amd64 1.2.2-1+b2 [197 kB] Get: 434 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.7.0+dfsg-2 [140 kB] Get: 435 http://deb.debian.org/debian trixie/main amd64 libsundials-ida6 amd64 6.4.1+dfsg1-3+b5 [145 kB] Get: 436 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.7.0+dfsg-2 [23.3 kB] Get: 437 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.7.0+dfsg-2 [87.1 kB] Get: 438 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-1+b2 [344 kB] Get: 439 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-8.1+b3 [132 kB] Get: 440 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-8.1+b3 [54.1 kB] Get: 441 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get: 442 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get: 443 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 50.0-2+b1 [61.7 kB] Get: 444 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 50.0-2+b1 [342 kB] Get: 445 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 446 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get: 447 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 448 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 50.0-2+b1 [70.2 kB] Get: 449 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get: 450 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get: 451 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get: 452 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get: 453 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get: 454 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get: 455 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.2-3 [652 kB] Get: 456 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get: 457 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 458 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get: 459 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get: 460 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.16.0+ds-5 [1109 kB] Get: 461 http://deb.debian.org/debian trixie/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get: 462 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-1+b2 [64.2 kB] Get: 463 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-3.3 [1301 kB] Get: 464 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-3.1+b1 [285 kB] Get: 465 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b1 [175 kB] Get: 466 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.4-2 [681 kB] Get: 467 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-1+b2 [605 kB] Get: 468 http://deb.debian.org/debian trixie/main amd64 libhypre-2.28.0 amd64 2.28.0-8+b2 [1640 kB] Get: 469 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 470 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 4.1.6-13.3 [226 kB] Get: 471 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.15 [2408 B] Get: 472 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1 [1567 kB] Get: 473 http://deb.debian.org/debian trixie/main amd64 libmumps-5.6t64 amd64 5.6.2-2.1+b1 [1895 kB] Get: 474 http://deb.debian.org/debian trixie/main amd64 libsuperlu6 amd64 6.0.1+dfsg1-1+b1 [170 kB] Get: 475 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.4-2 [410 kB] Get: 476 http://deb.debian.org/debian trixie/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-5+b3 [107 kB] Get: 477 http://deb.debian.org/debian trixie/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-5+b3 [1278 kB] Get: 478 http://deb.debian.org/debian trixie/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-5+b3 [441 kB] Get: 479 http://deb.debian.org/debian trixie/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-5+b3 [125 kB] Get: 480 http://deb.debian.org/debian trixie/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-5+b3 [451 kB] Get: 481 http://deb.debian.org/debian trixie/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-5+b3 [88.0 kB] Get: 482 http://deb.debian.org/debian trixie/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-5+b3 [120 kB] Get: 483 http://deb.debian.org/debian trixie/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-5+b3 [210 kB] Get: 484 http://deb.debian.org/debian trixie/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-5+b3 [94.3 kB] Get: 485 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-5+b3 [493 kB] Get: 486 http://deb.debian.org/debian trixie/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-5+b3 [386 kB] Get: 487 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-5+b3 [1009 kB] Get: 488 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.7.0+dfsg-2 [267 kB] Get: 489 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.19t64 amd64 3.19.6+dfsg1-2.2 [6847 kB] Get: 490 http://deb.debian.org/debian trixie/main amd64 libsundials-nvecparallel-petsc6 amd64 6.4.1+dfsg1-3+b5 [58.7 kB] Get: 491 http://deb.debian.org/debian trixie/main amd64 libsundials-sunmatrix4 amd64 6.4.1+dfsg1-3+b5 [105 kB] Get: 492 http://deb.debian.org/debian trixie/main amd64 libsundials-sunlinsol3 amd64 6.4.1+dfsg1-3+b5 [202 kB] Get: 493 http://deb.debian.org/debian trixie/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 494 http://deb.debian.org/debian trixie/main amd64 texinfo-lib amd64 7.1-3+b1 [224 kB] Get: 495 http://deb.debian.org/debian trixie/main amd64 tex-common all 6.18 [32.5 kB] Get: 496 http://deb.debian.org/debian trixie/main amd64 texinfo all 7.1-3 [1748 kB] Get: 497 http://deb.debian.org/debian trixie/main amd64 octave-common all 8.4.0-1 [6368 kB] Get: 498 http://deb.debian.org/debian trixie/main amd64 octave amd64 8.4.0-1+b3 [9724 kB] Get: 499 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 500 http://deb.debian.org/debian trixie/main amd64 libncurses-dev amd64 6.5-2 [349 kB] Get: 501 http://deb.debian.org/debian trixie/main amd64 libreadline-dev amd64 8.2-4 [152 kB] Get: 502 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get: 503 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 504 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get: 505 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 506 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 507 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get: 508 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 509 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 510 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 511 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.7.1-5 [547 kB] Get: 512 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 513 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get: 514 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get: 515 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 516 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 517 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get: 518 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get: 519 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 520 http://deb.debian.org/debian trixie/main amd64 libpthread-stubs0-dev amd64 0.4-1+b1 [5348 B] Get: 521 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 522 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get: 523 http://deb.debian.org/debian trixie/main amd64 libglx-dev amd64 1.7.0-1+b1 [15.8 kB] Get: 524 http://deb.debian.org/debian trixie/main amd64 libgl-dev amd64 1.7.0-1+b1 [101 kB] Get: 525 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 526 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 527 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-1+b2 [608 kB] Get: 528 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-1+b2 [52.3 kB] Get: 529 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-1+b2 [2125 kB] Get: 530 http://deb.debian.org/debian trixie/main amd64 libgfortran-13-dev amd64 13.2.0-24 [847 kB] Get: 531 http://deb.debian.org/debian trixie/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-24 [10.7 MB] Get: 532 http://deb.debian.org/debian trixie/main amd64 gfortran-13 amd64 13.2.0-24 [12.2 kB] Get: 533 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Get: 534 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Get: 535 http://deb.debian.org/debian trixie/main amd64 octave-dev amd64 8.4.0-1+b3 [957 kB] Get: 536 http://deb.debian.org/debian trixie/main amd64 dh-octave all 1.8.0 [22.7 kB] Fetched 235 MB in 22s (10.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... 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Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../014-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../015-libedit2_3.1-20230828-1+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20230828-1+b1) ... Selecting previously unselected package libcbor0.10:amd64. Preparing to unpack .../016-libcbor0.10_0.10.2-1.1_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-1.1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../017-libfido2-1_1.14.0-1+b2_amd64.deb ... Unpacking libfido2-1:amd64 (1.14.0-1+b2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../018-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../019-libcom-err2_1.47.1~rc2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../020-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../021-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../022-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../023-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../024-openssh-client_1%3a9.7p1-4_amd64.deb ... Unpacking openssh-client (1:9.7p1-4) ... Selecting previously unselected package ucf. Preparing to unpack .../025-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package aglfn. Preparing to unpack .../026-aglfn_1.7+git20191031.4036a9c-2_all.deb ... Unpacking aglfn (1.7+git20191031.4036a9c-2) ... Selecting previously unselected package m4. Preparing to unpack .../027-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../028-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../029-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../030-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../031-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../032-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../033-libparams-util-perl_1.102-3_amd64.deb ... Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../034-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../035-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../036-libb-hooks-op-check-perl_0.22-3+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../037-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../038-libdevel-callchecker-perl_0.009-1_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.009-1) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../039-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../040-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../041-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../042-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../043-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libclass-load-perl. Preparing to unpack .../044-libclass-load-perl_0.25-2_all.deb ... Unpacking libclass-load-perl (0.25-2) ... Selecting previously unselected package libio-stringy-perl. Preparing to unpack .../045-libio-stringy-perl_2.111-3_all.deb ... Unpacking libio-stringy-perl (2.111-3) ... Selecting previously unselected package libparams-validate-perl:amd64. Preparing to unpack .../046-libparams-validate-perl_1.31-2+b2_amd64.deb ... Unpacking libparams-validate-perl:amd64 (1.31-2+b2) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../047-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libgetopt-long-descriptive-perl. Preparing to unpack .../048-libgetopt-long-descriptive-perl_0.111-1_all.deb ... Unpacking libgetopt-long-descriptive-perl (0.111-1) ... Selecting previously unselected package libio-tiecombine-perl. Preparing to unpack .../049-libio-tiecombine-perl_1.005-3_all.deb ... Unpacking libio-tiecombine-perl (1.005-3) ... Selecting previously unselected package libmodule-pluggable-perl. Preparing to unpack .../050-libmodule-pluggable-perl_5.2-5_all.deb ... Unpacking libmodule-pluggable-perl (5.2-5) ... Selecting previously unselected package libstring-rewriteprefix-perl. Preparing to unpack .../051-libstring-rewriteprefix-perl_0.009-1_all.deb ... Unpacking libstring-rewriteprefix-perl (0.009-1) ... Selecting previously unselected package libapp-cmd-perl. Preparing to unpack .../052-libapp-cmd-perl_0.336-1_all.deb ... Unpacking libapp-cmd-perl (0.336-1) ... Selecting previously unselected package libboolean-perl. Preparing to unpack .../053-libboolean-perl_0.46-3_all.deb ... Unpacking libboolean-perl (0.46-3) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../054-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../055-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libcarp-assert-more-perl. Preparing to unpack .../056-libcarp-assert-more-perl_2.4.0-1_all.deb ... Unpacking libcarp-assert-more-perl (2.4.0-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../057-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../058-libfile-homedir-perl_1.006-2_all.deb ... Unpacking libfile-homedir-perl (1.006-2) ... Selecting previously unselected package libclone-choose-perl. Preparing to unpack .../059-libclone-choose-perl_0.010-2_all.deb ... Unpacking libclone-choose-perl (0.010-2) ... Selecting previously unselected package libhash-merge-perl. Preparing to unpack .../060-libhash-merge-perl_0.302-1_all.deb ... Unpacking libhash-merge-perl (0.302-1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../061-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../062-libexporter-tiny-perl_1.006002-1_all.deb ... Unpacking libexporter-tiny-perl (1.006002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../063-liblist-moreutils-xs-perl_0.430-4+b1_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-4+b1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../064-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package liblog-log4perl-perl. Preparing to unpack .../065-liblog-log4perl-perl_1.57-1_all.deb ... Unpacking liblog-log4perl-perl (1.57-1) ... Selecting previously unselected package libmouse-perl. Preparing to unpack .../066-libmouse-perl_2.5.10-1+b5_amd64.deb ... Unpacking libmouse-perl (2.5.10-1+b5) ... Selecting previously unselected package libmousex-nativetraits-perl. Preparing to unpack .../067-libmousex-nativetraits-perl_1.09-3_all.deb ... Unpacking libmousex-nativetraits-perl (1.09-3) ... Selecting previously unselected package libmousex-strictconstructor-perl. Preparing to unpack .../068-libmousex-strictconstructor-perl_0.02-3_all.deb ... Unpacking libmousex-strictconstructor-perl (0.02-3) ... Selecting previously unselected package libparse-recdescent-perl. Preparing to unpack .../069-libparse-recdescent-perl_1.967015+dfsg-4_all.deb ... Unpacking libparse-recdescent-perl (1.967015+dfsg-4) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../070-libpath-tiny-perl_0.144-1_all.deb ... Unpacking libpath-tiny-perl (0.144-1) ... Selecting previously unselected package libpod-pom-perl. Preparing to unpack .../071-libpod-pom-perl_2.01-4_all.deb ... Unpacking libpod-pom-perl (2.01-4) ... Selecting previously unselected package libregexp-common-perl. Preparing to unpack .../072-libregexp-common-perl_2017060201-3_all.deb ... Unpacking libregexp-common-perl (2017060201-3) ... Selecting previously unselected package libyaml-tiny-perl. Preparing to unpack .../073-libyaml-tiny-perl_1.74-1_all.deb ... Unpacking libyaml-tiny-perl (1.74-1) ... Selecting previously unselected package libconfig-model-perl. Preparing to unpack .../074-libconfig-model-perl_2.153-3_all.deb ... Unpacking libconfig-model-perl (2.153-3) ... Selecting previously unselected package libyaml-pp-perl. Preparing to unpack .../075-libyaml-pp-perl_0.38.0-1_all.deb ... Unpacking libyaml-pp-perl (0.38.0-1) ... Selecting previously unselected package cme. Preparing to unpack .../076-cme_1.040-1_all.deb ... Unpacking cme (1.040-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../077-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../078-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../079-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../080-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../081-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../082-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../083-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../084-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../085-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../086-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../087-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... 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Unpacking libpath-iterator-rule-perl (1.015-2) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../210-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libpod-constants-perl. Preparing to unpack .../211-libpod-constants-perl_0.19-2_all.deb ... Unpacking libpod-constants-perl (0.19-2) ... Selecting previously unselected package libset-intspan-perl. Preparing to unpack .../212-libset-intspan-perl_1.19-3_all.deb ... Unpacking libset-intspan-perl (1.19-3) ... Selecting previously unselected package libstring-copyright-perl. Preparing to unpack .../213-libstring-copyright-perl_0.003014-1_all.deb ... Unpacking libstring-copyright-perl (0.003014-1) ... Selecting previously unselected package libstring-escape-perl. Preparing to unpack .../214-libstring-escape-perl_2010.002-3_all.deb ... Unpacking libstring-escape-perl (2010.002-3) ... Selecting previously unselected package libregexp-pattern-license-perl. Preparing to unpack .../215-libregexp-pattern-license-perl_3.11.0-1_all.deb ... Unpacking libregexp-pattern-license-perl (3.11.0-1) ... Selecting previously unselected package libregexp-pattern-perl. Preparing to unpack .../216-libregexp-pattern-perl_0.2.14-2_all.deb ... Unpacking libregexp-pattern-perl (0.2.14-2) ... Selecting previously unselected package libstring-license-perl. Preparing to unpack .../217-libstring-license-perl_0.0.9-2_all.deb ... Unpacking libstring-license-perl (0.0.9-2) ... Selecting previously unselected package licensecheck. Preparing to unpack .../218-licensecheck_3.3.9-1_all.deb ... Unpacking licensecheck (3.3.9-1) ... Selecting previously unselected package diffstat. 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Selecting previously unselected package gpgconf. Preparing to unpack .../222-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package gpg. Preparing to unpack .../223-gpg_2.2.40-3_amd64.deb ... Unpacking gpg (2.2.40-3) ... Selecting previously unselected package iso-codes. Preparing to unpack .../224-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../225-libberkeleydb-perl_0.64-2+b3_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.64-2+b3) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../226-libclass-xsaccessor-perl_1.19-4+b3_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b3) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../227-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../228-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../229-libcpanel-json-xs-perl_4.37-1+b2_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../230-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../231-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../232-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. 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Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../244-libdevel-size-perl_0.84-1_amd64.deb ... Unpacking libdevel-size-perl (0.84-1) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../245-libemail-address-xs-perl_1.05-1+b3_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../246-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../247-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../248-libfile-find-rule-perl_0.34-3_all.deb ... Unpacking libfile-find-rule-perl (0.34-3) ... Selecting previously unselected package libio-string-perl. 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Unpacking libjson-maybexs-perl (1.004005-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../255-liblist-compare-perl_0.55-2_all.deb ... Unpacking liblist-compare-perl (0.55-2) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../256-liblist-someutils-perl_0.59-1_all.deb ... Unpacking liblist-someutils-perl (0.59-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../257-liblist-utilsby-perl_0.12-2_all.deb ... Unpacking liblist-utilsby-perl (0.12-2) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../258-libmldbm-perl_2.05-4_all.deb ... Unpacking libmldbm-perl (2.05-4) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../259-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libimport-into-perl. 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Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../266-libperlio-gzip-perl_0.20-1+b3_amd64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b3) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../267-libperlio-utf8-strict-perl_0.010-1+b2_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.010-1+b2) ... Selecting previously unselected package libproc-processtable-perl:amd64. Preparing to unpack .../268-libproc-processtable-perl_0.636-1+b2_amd64.deb ... Unpacking libproc-processtable-perl:amd64 (0.636-1+b2) ... Selecting previously unselected package libregexp-wildcards-perl. Preparing to unpack .../269-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../270-libsereal-decoder-perl_5.004+ds-1+b2_amd64.deb ... Unpacking libsereal-decoder-perl (5.004+ds-1+b2) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../271-libsereal-encoder-perl_5.004+ds-1+b2_amd64.deb ... Unpacking libsereal-encoder-perl (5.004+ds-1+b2) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../272-libterm-readkey-perl_2.38-2+b3_amd64.deb ... Unpacking libterm-readkey-perl (2.38-2+b3) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../273-libtext-levenshteinxs-perl_0.03-5+b3_amd64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-5+b3) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../274-libmarkdown2_2.2.7-2+b1_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.7-2+b1) ... Selecting previously unselected package libtext-markdown-discount-perl. Preparing to unpack .../275-libtext-markdown-discount-perl_0.16-1+b2_amd64.deb ... Unpacking libtext-markdown-discount-perl (0.16-1+b2) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../276-libdata-messagepack-perl_1.02-1+b3_amd64.deb ... Unpacking libdata-messagepack-perl (1.02-1+b3) ... Selecting previously unselected package libtext-xslate-perl:amd64. Preparing to unpack .../277-libtext-xslate-perl_3.5.9-2_amd64.deb ... Unpacking libtext-xslate-perl:amd64 (3.5.9-2) ... Selecting previously unselected package libtime-duration-perl. Preparing to unpack .../278-libtime-duration-perl_1.21-2_all.deb ... Unpacking libtime-duration-perl (1.21-2) ... Selecting previously unselected package libtime-moment-perl. Preparing to unpack .../279-libtime-moment-perl_0.44-2+b3_amd64.deb ... Unpacking libtime-moment-perl (0.44-2+b3) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../280-libunicode-utf8-perl_0.62-2+b2_amd64.deb ... Unpacking libunicode-utf8-perl (0.62-2+b2) ... Selecting previously unselected package libcgi-pm-perl. 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Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../305-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package libarpack2t64:amd64. Preparing to unpack .../306-libarpack2t64_3.9.1-1.1+b1_amd64.deb ... Unpacking libarpack2t64:amd64 (3.9.1-1.1+b1) ... Selecting previously unselected package libccolamd3:amd64. Preparing to unpack .../307-libccolamd3_1%3a7.7.0+dfsg-2_amd64.deb ... Unpacking libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Selecting previously unselected package libcamd3:amd64. Preparing to unpack .../308-libcamd3_1%3a7.7.0+dfsg-2_amd64.deb ... Unpacking libcamd3:amd64 (1:7.7.0+dfsg-2) ... Selecting previously unselected package libcolamd3:amd64. Preparing to unpack .../309-libcolamd3_1%3a7.7.0+dfsg-2_amd64.deb ... Unpacking libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Selecting previously unselected package libcholmod5:amd64. Preparing to unpack .../310-libcholmod5_1%3a7.7.0+dfsg-2_amd64.deb ... 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... Setting up libwayland-server0:amd64 (1.22.0-2.1+b1) ... Setting up libaom3:amd64 (3.8.2-2) ... Setting up libpciaccess0:amd64 (0.17-3+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libdouble-conversion3:amd64 (3.3.0-1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libfftw3-single3:amd64 (3.3.10-1+b2) ... Setting up libset-intspan-perl (1.19-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up libogg0:amd64 (1.3.5-3+b1) ... Setting up libmouse-perl (2.5.10-1+b5) ... 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Setting up liberror-perl (0.17029-2) ... Setting up libtrilinos-trilinosss-13.2:amd64 (13.2.0-5+b3) ... Setting up libasound2-data (1.2.11-1) ... Setting up libbtf2:amd64 (1:7.7.0+dfsg-2) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libboolean-perl (0.46-3) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.2-1) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.42-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libasound2t64:amd64 (1.2.11-1+b1) ... Setting up libmunge2:amd64 (0.5.15-4) ... Setting up liblog-log4perl-perl (1.57-1) ... Setting up libtext-reform-perl (1.20-5) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libio-tiecombine-perl (1.005-3) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libavahi-common-data:amd64 (0.8-13+b2) ... Setting up libncurses6:amd64 (6.5-2) ... Setting up libdbus-1-3:amd64 (1.14.10-4+b1) ... Setting up libfftw3-quad3:amd64 (3.3.10-1+b2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libopus0:amd64 (1.4-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.2.1-3) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libhwloc15:amd64 (2.10.0-1+b1) ... Setting up libvorbis0a:amd64 (1.3.7-2) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtext-template-perl (1.61-1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.21-14) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up liblist-moreutils-xs-perl (0.430-4+b1) ... Setting up libsensors5:amd64 (1:3.6.0-9) ... Setting up libjxl0.7:amd64 (0.7.0-10.2+b3) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libltdl7:amd64 (2.4.7-7+b1) ... Setting up libfftw3-double3:amd64 (3.3.10-1+b2) ... Setting up libglapi-mesa:amd64 (24.0.7-1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... 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Setting up sensible-utils (0.0.22) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libxshmfence1:amd64 (1.3-1+b1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up lzop (1.04-2) ... Setting up libjson-perl (4.10000-1) ... Setting up liblog-any-adapter-screen-perl (0.140-2) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libmd4c0:amd64 (0.4.8-1+b1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libmousex-strictconstructor-perl (0.02-3) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Setting up liblua5.4-0:amd64 (5.4.6-3+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libaliased-perl (0.34-3) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libtext-autoformat-perl (1.750000-2) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b1) ... Setting up libflac12t64:amd64 (1.4.3+ds-2.1) ... Setting up libtoml-tiny-perl (0.16-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libsort-versions-perl (1.62-3) ... 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Setting up libtext-levenshtein-damerau-perl (0.41-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libgudev-1.0-0:amd64 (238-5) ... Setting up libmp3lame0:amd64 (3.100-6+b2) ... Setting up libblas-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1) ... Setting up libvorbisenc2:amd64 (1.3.7-2) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libwacom-common (2.10.0-2) ... Setting up libmousex-nativetraits-perl (1.09-3) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libxkbcommon0:amd64 (1.6.0-1+b1) ... Setting up libwayland-client0:amd64 (1.22.0-2.1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gnuplot-data (6.0.0+dfsg1-3) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5-2) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up gettext (0.21-14+b1) ... Setting up libfeature-compat-try-perl (0.05-1) ... Setting up libarpack2t64:amd64 (3.9.1-1.1+b1) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxau-dev:amd64 (1:1.0.9-1+b1) ... Setting up libxcb-xinput0:amd64 (1.15-1) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libwacom9:amd64 (2.10.0-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libpod-constants-perl (0.19-2) ... Setting up libedit2:amd64 (3.1-20230828-1+b1) ... Setting up libhash-merge-perl (0.302-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libsoftware-copyright-perl (0.012-2) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libxcb-shape0:amd64 (1.15-1) ... Setting up libavahi-common3:amd64 (0.8-13+b2) ... Setting up libcxsparse4:amd64 (1:7.7.0+dfsg-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libpath-iterator-rule-perl (1.015-2) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1+b1) ... Setting up libsundials-sunmatrix4:amd64 (6.4.1+dfsg1-3+b5) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1+b1) ... Setting up libqrupdate1:amd64 (1.1.2-4+b1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up gfortran-13-x86-64-linux-gnu (13.2.0-24) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up libsundials-ida6:amd64 (6.4.1+dfsg1-3+b5) ... Setting up libcamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libinput-bin (1.25.0-1+b2) ... Setting up libxcb-xkb1:amd64 (1.15-1) ... Setting up libxcb-image0:amd64 (0.4.0-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libobject-pad-perl (0.808-1+b2) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.2-3+b1) ... Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxcb-xinerama0:amd64 (1.15-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-12) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libglpk40:amd64 (5.0-1+b1) ... Setting up libstring-copyright-perl (0.003014-1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up gfortran-13 (13.2.0-24) ... Setting up shared-mime-info (2.4-4) ... Setting up libxkbcommon-x11-0:amd64 (1.6.0-1+b1) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libjack-jackd2-0:amd64 (1.9.21~dfsg-3+b3) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up groff-base (1.23.0-4) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libsndfile1:amd64 (1.2.2-1+b2) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libfftw3-dev:amd64 (3.3.10-1+b2) ... Setting up libavahi-client3:amd64 (0.8-13+b2) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libinput10:amd64 (1.25.0-1+b2) ... Setting up libportaudio2:amd64 (19.6.0-1.2+b2) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libibverbs1:amd64 (50.0-2+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.0.4-3) ... Setting up libcarp-assert-more-perl (2.4.0-1) ... Setting up libcholmod5:amd64 (1:7.7.0+dfsg-2) ... Setting up libdrm-nouveau2:amd64 (2.4.120-2) ... Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:amd64 (8.7.1-5) ... Setting up libgbm1:amd64 (24.0.7-1) ... Setting up ibverbs-providers:amd64 (50.0-2+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libspqr4:amd64 (1:7.7.0+dfsg-2) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up openssh-client (1:9.7p1-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libpango-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libgl1-mesa-dri:amd64 (24.0.7-1) ... Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-5) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libreadline-dev:amd64 (8.2-4) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up libfeature-compat-class-perl (0.06-1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5core5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up libegl-mesa0:amd64 (24.0.7-1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libmailtools-perl (2.21-3) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b1) ... Setting up libcurl4-openssl-dev:amd64 (8.7.1-5) ... Setting up libklu2:amd64 (1:7.7.0+dfsg-2) ... Setting up libconfig-model-perl (2.153-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-section-perl (0.200008-1) ... Setting up libegl1:amd64 (1.7.0-1+b1) ... Setting up libqt5sql5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up librdmacm1t64:amd64 (50.0-2+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libcups2t64:amd64 (2.4.7-1.2+b1) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libstring-rewriteprefix-perl (0.009-1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up libconfig-model-backend-yaml-perl (2.134-2) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libqt5dbus5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up libglx-mesa0:amd64 (24.0.7-1) ... Setting up libglx0:amd64 (1.7.0-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libxcursor1:amd64 (1:1.2.1-1+b1) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libqt5network5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-3.3) ... Setting up libqt5xml5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up debhelper (13.15.3) ... Setting up libhwloc-plugins:amd64 (2.10.0-1+b1) ... Setting up libmime-tools-perl (5.515-1) ... Setting up libsoftware-license-perl (0.104006-1) ... Setting up libclass-load-perl (0.25-2) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up libpmix2t64:amd64 (5.0.2-3) ... Setting up texinfo (7.1-3) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up libglx-dev:amd64 (1.7.0-1+b1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libparams-validate-perl:amd64 (1.31-2+b2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libfltk1.3t64:amd64 (1.3.8-6.1) ... Setting up libgl-dev:amd64 (1.7.0-1+b1) ... Setting up libsoftware-licensemoreutils-perl (1.009-1) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libfltk-gl1.3t64:amd64 (1.3.8-6.1) ... Setting up libqt5gui5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up libstring-license-perl (0.0.9-2) ... Setting up libgetopt-long-descriptive-perl (0.111-1) ... Setting up licensecheck (3.3.9-1) ... Setting up libucx0:amd64 (1.16.0+ds-5) ... Setting up libqt5widgets5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up libapp-cmd-perl (0.336-1) ... Setting up libqt5help5:amd64 (5.15.10-7) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up cme (1.040-1) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libqt5printsupport5t64:amd64 (5.15.10+dfsg-7.2+b1) ... Setting up libptscotch-7.0:amd64 (7.0.4-2) ... Setting up mpi-default-bin (1.15) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-3.1+b1) ... Setting up libfftw3-mpi3:amd64 (3.3.10-1+b2) ... Setting up libqscintilla2-qt5-15:amd64 (2.14.1+dfsg-1+b2) ... Setting up libtrilinos-zoltan-13.2:amd64 (13.2.0-5+b3) ... Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libtrilinos-teuchos-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-epetra-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-aztecoo-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-triutils-13.2:amd64 (13.2.0-5+b3) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-1+b2) ... Setting up libmumps-5.6t64:amd64 (5.6.2-2.1+b1) ... Setting up libhypre-2.28.0:amd64 (2.28.0-8+b2) ... Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-5+b3) ... Setting up libtrilinos-ml-13.2:amd64 (13.2.0-5+b3) ... Setting up libpetsc-real3.19t64:amd64 (3.19.6+dfsg1-2.2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.19.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.19 (libpetsc.so.3.19) in auto mode Setting up libsundials-nvecparallel-petsc6:amd64 (6.4.1+dfsg1-3+b5) ... Setting up libsundials-sunlinsol3:amd64 (6.4.1+dfsg1-3+b5) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libwww-perl (6.77-1) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up libparse-debcontrol-perl (2.005-6) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up gnuplot-nox (6.0.0+dfsg1-3) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.43-1) ... Setting up lintian (2.117.0) ... Setting up libgraphicsmagick++-q16-12t64 (1.4+really1.3.43-1) ... Setting up libconfig-model-dpkg-perl (3.004) ... Setting up dh-octave-autopkgtest (1.8.0) ... Setting up octave (8.4.0-1+b3) ... Setting up octave-dev (8.4.0-1+b3) ... Setting up dh-octave (1.8.0) ... Processing triggers for libc-bin (2.38-10) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/753448/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/753448/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/octave-stk-2.8.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../octave-stk_2.8.1-1_source.changes dpkg-buildpackage: info: source package octave-stk dpkg-buildpackage: info: source version 2.8.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sébastien Villemot dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=octave dh_auto_clean -O--buildsystem=octave dh_octave_clean make[1]: Entering directory '/build/reproducible-path/octave-stk-2.8.1' make[1]: *** No rule to make target 'clean'. make[1]: *** No rule to make target 'distclean'. make[1]: Leaving directory '/build/reproducible-path/octave-stk-2.8.1' make[1]: Entering directory '/build/reproducible-path/octave-stk-2.8.1/src' rm -f *.o *.mex make[1]: *** No rule to make target 'distclean'. make[1]: Leaving directory '/build/reproducible-path/octave-stk-2.8.1/src' dh_autoreconf_clean -O--buildsystem=octave dh_clean -O--buildsystem=octave debian/rules binary dh binary --buildsystem=octave dh_update_autotools_config -O--buildsystem=octave dh_autoreconf -O--buildsystem=octave dh_octave_version -O--buildsystem=octave Checking the Octave version... ok dh_auto_configure -O--buildsystem=octave dh_auto_build -O--buildsystem=octave dh_auto_test -O--buildsystem=octave create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=octave dh_prep -O--buildsystem=octave dh_auto_install --destdir=debian/octave-stk/ -O--buildsystem=octave octave --no-gui --no-history --silent --no-init-file --no-window-system /usr/share/dh-octave/install-pkg.m /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/lib/x86_64-linux-gnu/octave/packages make[1]: Entering directory '/build/reproducible-path/octave-stk-2.8.1/src' /usr/bin/mkoctfile --verbose --mex --output __stk_dist_pairwise__.mex stk_dist_pairwise.c /usr/bin/mkoctfile --verbose --mex --output __get_column_number__.mex get_column_number.c /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixy__.mex stk_dist_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_isdominated_mex__.mex stk_isdominated_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_mindist_mex__.mex stk_mindist_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixx__.mex stk_dist_matrixx.c /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.c /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.c /usr/bin/mkoctfile --verbose --mex --output __stk_paretofind_mex__.mex stk_paretofind_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_vdc_rr2__.mex stk_sampling_vdc_rr2.c /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.c /usr/bin/mkoctfile --verbose --mex --output __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.c wfg.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_dist_pairwise.c -o /tmp/oct-UN6S2q.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG get_column_number.c -o /tmp/oct-zRMoTW.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_dist_matrixy.c -o /tmp/oct-spTSPm.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_filldist_discr_mex.c -o /tmp/oct-Dj2sw5.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_gpquadform_matrixy.c -o /tmp/oct-t4Fvme.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_isdominated_mex.c -o /tmp/oct-FEdnoo.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_mindist_mex.c -o /tmp/oct-tzgWg6.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_dist_matrixx.c -o /tmp/oct-8waQ1P.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_gpquadform_matrixx.c -o /tmp/oct-yIVMlL.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_gpquadform_pairwise.c -o /tmp/oct-oY4VT5.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_paretofind_mex.c -o /tmp/oct-rehpZG.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_sampling_vdc_rr2.c -o /tmp/oct-oU2S84.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_sampling_sobol_mex.c -o /tmp/oct-Ndgy1N.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_distrib_bivnorm0_cdf.c -o /tmp/oct-V0FmoI.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG stk_dominatedhv_mex.c -o /tmp/oct-yn2yq2.o g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_dist_pairwise__.mex /tmp/oct-UN6S2q.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_mindist_mex__.mex /tmp/oct-tzgWg6.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_gpquadform_pairwise__.mex /tmp/oct-oY4VT5.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_dist_matrixy__.mex /tmp/oct-spTSPm.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_dist_matrixx__.mex /tmp/oct-8waQ1P.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_filldist_discr_mex__.mex /tmp/oct-Dj2sw5.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_gpquadform_matrixy__.mex /tmp/oct-t4Fvme.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_gpquadform_matrixx__.mex /tmp/oct-yIVMlL.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __get_column_number__.mex /tmp/oct-zRMoTW.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_distrib_bivnorm0_cdf__.mex /tmp/oct-V0FmoI.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_paretofind_mex__.mex /tmp/oct-rehpZG.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_sampling_sobol_mex__.mex /tmp/oct-Ndgy1N.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_isdominated_mex__.mex /tmp/oct-FEdnoo.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_sampling_vdc_rr2__.mex /tmp/oct-oU2S84.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -DMEX_DEBUG wfg.c -o /tmp/oct-MNojCr.o g++ -I/usr/include/octave-8.4.0/octave/.. -I/usr/include/octave-8.4.0/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/octave-stk-2.8.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -o __stk_dominatedhv_mex__.mex /tmp/oct-yn2yq2.o /tmp/oct-MNojCr.o -shared -Wl,-Bsymbolic -Wl,-z,relro -L/usr/lib/x86_64-linux-gnu -shared -Wl,-Bsymbolic -flto=auto -ffat-lto-objects -Wl,-z,relro make[1]: Leaving directory '/build/reproducible-path/octave-stk-2.8.1/src' copyfile /build/reproducible-path/octave-stk-2.8.1/./src/__get_column_number__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dist_matrixx__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dist_matrixy__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dist_pairwise__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_distrib_bivnorm0_cdf__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_dominatedhv_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_filldist_discr_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_gpquadform_matrixx__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_gpquadform_matrixy__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_gpquadform_pairwise__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_isdominated_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_mindist_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_paretofind_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_sampling_sobol_mex__.mex /build/reproducible-path/octave-stk-2.8.1/./src/__stk_sampling_vdc_rr2__.mex /build/reproducible-path/octave-stk-2.8.1/./inst/x86_64-pc-linux-gnu-api-v58 For information about changes from previous versions of the stk package, run 'news stk'. rm: cannot remove '/build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/doc': Is a directory dh_octave_check -O--buildsystem=octave Checking package... Run the unit tests... Checking m files ... [inst/utils/stk_generate_samplepaths.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/utils/stk_generate_samplepaths.m ***** shared model, xi, zi, xt, n, nb_paths dim = 1; n = 50; nb_paths = 5; model = stk_model (@stk_materncov32_iso, dim); model.param = log ([1.0; 2.9]); xt = stk_sampling_regulargrid (n, dim, [-1.0; 1.0]); xi = [xt(1, :); xt(end, :)]; zi = [0; 0]; ***** error zsim = stk_generate_samplepaths (); ***** error zsim = stk_generate_samplepaths (model); ***** test zsim = stk_generate_samplepaths (model, xt); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt, nb_paths); ***** test zsim = stk_generate_samplepaths (model, xt); assert (isequal (size (zsim), [n, 1])); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); assert (isequal (size (zsim), [n, nb_paths])); ***** test % duplicate simulation points zsim = stk_generate_samplepaths (model, [xt; xt], nb_paths); assert (isequal (size (zsim), [2 * n, nb_paths])); assert (isequal (zsim(1:n, :), zsim((n + 1):end, :))); ***** test % simulation points equal to observation points (noiseless model) % https://sourceforge.net/p/kriging/tickets/14/ zsim = stk_generate_samplepaths (model, xt, zeros (n, 1), xt); assert (isequal (zsim, zeros (n, 1))); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/utils/stk_conditioning.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/utils/stk_conditioning.m ***** shared n, m, ni, xi_ind, lambda, zsim, zi n = 50; m = 5; ni = 10; xi_ind = 1:ni; lambda = 1/ni * ones (ni, n); % prediction == averaging zsim = ones (n, m); % const unconditioned samplepaths zi = zeros (ni, 1); % conditioning by zeros ***** error zsimc = stk_conditioning (); ***** error zsimc = stk_conditioning (lambda); ***** error zsimc = stk_conditioning (lambda, zi); ***** test zsimc = stk_conditioning (lambda, zi, zsim); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), zeros (n, m))); ***** test zi = 2 * ones (ni, 1); % conditioning by twos zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), 2 * ones (n, m))); ***** test DIM = 1; nt = 400; xt = stk_sampling_regulargrid (nt, DIM, [-1.0; 1.0]); NI = 6; xi_ind = [1 20 90 200 300 350]; xi = xt(xi_ind, 1); zi = (1:NI)'; % linear response ;-) % Carry out the kriging prediction at points xt model = stk_model (@stk_materncov52_iso); model.param = log ([1.0; 2.9]); [ignore_zp, lambda] = stk_predict (model, xi, [], xt); % Generate (unconditional) sample paths according to the model NB_PATHS = 10; zsim = stk_generate_samplepaths (model, xt, NB_PATHS); zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/lm/stk_lm_polynomial.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/stk_lm_polynomial.m ***** error lm = stk_lm_polynomial (); ***** test lm = stk_lm_polynomial (-1); assert (isa (lm, 'stk_lm_null')); ***** test lm = stk_lm_polynomial (0); assert (isa (lm, 'stk_lm_constant')); ***** test lm = stk_lm_polynomial (1); assert (isa (lm, 'stk_lm_affine')); ***** test lm = stk_lm_polynomial (2); assert (isa (lm, 'stk_lm_quadratic')); ***** test lm = stk_lm_polynomial (3); assert (isa (lm, 'stk_lm_cubic')); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_matrix/stk_lm_matrix.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_matrix/stk_lm_matrix.m ***** test stk_test_class ('stk_lm_matrix') ***** test %%% dim 1 data = rand (10, 1); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); ***** test %%% dim 3 data = rand (10, 3); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m ***** test stk_test_class ('stk_lm_quadratic') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_quadratic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_quadratic (), x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/stk_lm_constant.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_constant/stk_lm_constant.m ***** test stk_test_class ('stk_lm_constant') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_constant/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_constant (), x); assert (isequal (size (P), [n, 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/stk_lm_null.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_null/stk_lm_null.m ***** test stk_test_class ('stk_lm_null') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_null/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_null (), x); assert (isequal (size (P), [n, 0])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/stk_lm_cubic.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_cubic/stk_lm_cubic.m ***** test stk_test_class ('stk_lm_cubic') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_cubic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_cubic (), x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/stk_lm_affine.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_affine/stk_lm_affine.m ***** test stk_test_class ('stk_lm_affine') 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/lm/@stk_lm_affine/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_affine (), x); assert (isequal (size (P), [n, d + 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/covfcs/stk_noisecov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_noisecov.m ***** shared ni, lognoisevariance, diff ni = 5; lognoisevariance = 0.0; diff = -1; ***** error K = stk_noisecov (); ***** error K = stk_noisecov (ni); ***** test K = stk_noisecov (ni, lognoisevariance); ***** test K = stk_noisecov (ni, lognoisevariance, diff); ***** test K = stk_noisecov (ni, lognoisevariance, diff, true); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_gausscov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_gausscov_aniso (); ***** error K0 = stk_gausscov_aniso (param); ***** error K0 = stk_gausscov_aniso (param, x); ***** test K1 = stk_gausscov_aniso (param, x, y); ***** test K2 = stk_gausscov_aniso (param, x, y, -1); ***** test K3 = stk_gausscov_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_gausscov_aniso (param, u, v, -1); K2 = stk_gausscov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_gausscov_aniso (param, x, y, -2); ***** test stk_gausscov_aniso (param, x, y, -1); ***** error stk_gausscov_aniso (param, x, y, 0); ***** test stk_gausscov_aniso (param, x, y, 1); ***** test stk_gausscov_aniso (param, x, y, 2); ***** error stk_gausscov_aniso (param, x, y, 3); ***** error stk_gausscov_aniso (param, x, y, nan); ***** error stk_gausscov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_gausscov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_gausscov_aniso (param, x, y, i); dK2 = stk_gausscov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern52.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_matern52.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern52 (); ***** test stk_rbf_matern52 (h); ***** test stk_rbf_matern52 (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern52 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h); y = stk_rbf_matern52 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h, 2); y = stk_rbf_matern52 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern52 (inf) == 0) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern32.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_matern32.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern32 (); ***** test stk_rbf_matern32 (h); ***** test stk_rbf_matern32 (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern32 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h); y = stk_rbf_matern32 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h, 2); y = stk_rbf_matern32 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern32 (inf) == 0) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_gauss.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_gauss.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_gauss (); ***** test stk_rbf_gauss (h); ***** test stk_rbf_gauss (h, diff); ***** test % h = 0.0 => correlation = 1.0 x = stk_rbf_gauss (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_matern.m ***** shared nu, h, diff nu = 1.0; h = 1.0; diff = -1; ***** error stk_rbf_matern (); ***** error stk_rbf_matern (nu); ***** test stk_rbf_matern (nu, h); ***** test stk_rbf_matern (nu, h, diff); ***** test %% h = 0.0 => correlation = 1.0 for nu = 0.1:0.2:5.0, x = stk_rbf_matern (nu, 0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); end 5 tests, 5 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_exponential.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_exponential.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_exponential (); ***** test stk_rbf_exponential (h); ***** test stk_rbf_exponential (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_exponential (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_exponential (h + delta) - stk_rbf_exponential (h)) / delta; d2 = stk_rbf_exponential (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h); y = stk_rbf_exponential (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h, 2); y = stk_rbf_exponential (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_exponential (inf) == 0) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_spherical.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/rbf/stk_rbf_spherical.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_spherical (); ***** test stk_rbf_spherical (h); ***** test stk_rbf_spherical (h, diff); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_spherical (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_spherical (h + delta) - stk_rbf_spherical (h)) / delta; d2 = stk_rbf_spherical (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** assert (stk_rbf_spherical (inf) == 0) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov32_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_materncov32_aniso (); ***** error K0 = stk_materncov32_aniso (param); ***** error K0 = stk_materncov32_aniso (param, x); ***** test K1 = stk_materncov32_aniso (param, x, y); ***** test K2 = stk_materncov32_aniso (param, x, y, -1); ***** test K3 = stk_materncov32_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_materncov32_aniso (param, u, v, -1); K2 = stk_materncov32_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_materncov32_aniso (param, x, y, -2); ***** test stk_materncov32_aniso (param, x, y, -1); ***** error stk_materncov32_aniso (param, x, y, 0); ***** test stk_materncov32_aniso (param, x, y, 1); ***** test stk_materncov32_aniso (param, x, y, 2); ***** error stk_materncov32_aniso (param, x, y, 3); ***** error stk_materncov32_aniso (param, x, y, nan); ***** error stk_materncov32_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov32_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov32_aniso (param, x, y, i); dK2 = stk_materncov32_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_discretecov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_discretecov.m ***** shared model, model2, x0 n0 = 20; n1 = 10; dim = 4; x0 = stk_sampling_randunif (n0, dim); x1 = stk_sampling_randunif (n1, dim); model = stk_model (@stk_materncov52_aniso, dim); model.lm = stk_lm_affine (); model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); ***** test % without noise, pairwise = false model.lognoisevariance = - inf; model2 = stk_model (@stk_discretecov, model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); ***** test % without noise, pairwise = true K1 = stk_make_matcov (model, x0([2 5 6], :), [], true); K2 = stk_make_matcov (model2, [2 5 6]', [], true); assert (stk_isequal_tolrel (K1, K2)); ***** test % with noise, pairwise = false model.lognoisevariance = log (0.01); model2 = stk_model (@stk_discretecov, model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_sphcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_sphcov_iso ([param; 1.234], x, y); ***** error stk_sphcov_iso (); ***** error stk_sphcov_iso (param); ***** error stk_sphcov_iso (param, x); ***** test stk_sphcov_iso (param, x, y); ***** test stk_sphcov_iso (param, x, y, -1); ***** test stk_sphcov_iso (param, x, y, -1, false); ***** error stk_sphcov_iso (param, x, y, -2); ***** test stk_sphcov_iso (param, x, y, -1); ***** error stk_sphcov_iso (param, x, y, 0); ***** test stk_sphcov_iso (param, x, y, 1); ***** test stk_sphcov_iso (param, x, y, 2); ***** error stk_sphcov_iso (param, x, y, 3); ***** error stk_sphcov_iso (param, x, y, nan); ***** error stk_sphcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_sphcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_sphcov_iso (param, x, y, i); dK2 = stk_sphcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_expcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_expcov_iso ([param; 1.234], x, y); ***** error stk_expcov_iso (); ***** error stk_expcov_iso (param); ***** error stk_expcov_iso (param, x); ***** test stk_expcov_iso (param, x, y); ***** test stk_expcov_iso (param, x, y, -1); ***** test stk_expcov_iso (param, x, y, -1, false); ***** error stk_expcov_iso (param, x, y, -2); ***** test stk_expcov_iso (param, x, y, -1); ***** error stk_expcov_iso (param, x, y, 0); ***** test stk_expcov_iso (param, x, y, 1); ***** test stk_expcov_iso (param, x, y, 2); ***** error stk_expcov_iso (param, x, y, 3); ***** error stk_expcov_iso (param, x, y, nan); ***** error stk_expcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_expcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_expcov_iso (param, x, y, i); dK2 = stk_expcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov52_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov52_aniso (); ***** error stk_materncov52_aniso (param); ***** error stk_materncov52_aniso (param, x); ***** test stk_materncov52_aniso (param, x, y); ***** test stk_materncov52_aniso (param, x, y, -1); ***** test stk_materncov52_aniso (param, x, y, -1, false); ***** error stk_materncov52_aniso (param, x, y, -2); ***** test stk_materncov52_aniso (param, x, y, -1); ***** error stk_materncov52_aniso (param, x, y, 0); ***** test stk_materncov52_aniso (param, x, y, 1); ***** test stk_materncov52_aniso (param, x, y, 2); ***** error stk_materncov52_aniso (param, x, y, 3); ***** error stk_materncov52_aniso (param, x, y, nan); ***** error stk_materncov52_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov52_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso(param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov52_aniso (param, x, y, i); dK2 = stk_materncov52_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 17 tests, 17 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.8]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error stk_materncov_aniso(); ***** error stk_materncov_aniso(param); ***** error stk_materncov_aniso(param, x); ***** test stk_materncov_aniso(param, x, y); ***** test stk_materncov_aniso(param, x, y, -1); ***** test stk_materncov_aniso(param, x, y, -1, false); ***** error stk_materncov_aniso(param, x, y, -2); ***** test stk_materncov_aniso(param, x, y, -1); ***** error stk_materncov_aniso(param, x, y, 0); ***** test stk_materncov_aniso(param, x, y, 1); ***** test stk_materncov_aniso(param, x, y, 2); ***** test stk_materncov_aniso(param, x, y, 3); ***** error stk_materncov_aniso(param, x, y, 4); ***** error stk_materncov_aniso(param, x, y, nan); ***** error stk_materncov_aniso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.8; 2.7; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif(nx, dim); y = stk_sampling_randunif(ny, dim); ***** test K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1); assert(isequal(size(K1), [nx ny])); assert(stk_isequal_tolabs(K1, K2)); ***** test for i = 1:(dim+2), dK = stk_materncov_aniso(param, x, y, i); assert(isequal(size(dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:(dim+2), dK1 = stk_materncov_aniso(param, x, y, i); dK2 = stk_materncov_aniso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov52_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_materncov52_iso ([param; 1.234], x, y); ***** error stk_materncov52_iso (); ***** error stk_materncov52_iso (param); ***** error stk_materncov52_iso (param, x); ***** test stk_materncov52_iso (param, x, y); ***** test stk_materncov52_iso (param, x, y, -1); ***** test stk_materncov52_iso (param, x, y, -1, false); ***** error stk_materncov52_iso (param, x, y, -2); ***** test stk_materncov52_iso (param, x, y, -1); ***** error stk_materncov52_iso (param, x, y, 0); ***** test stk_materncov52_iso (param, x, y, 1); ***** test stk_materncov52_iso (param, x, y, 2); ***** error stk_materncov52_iso (param, x, y, 3); ***** error stk_materncov52_iso (param, x, y, nan); ***** error stk_materncov52_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov52_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov52_iso (param, x, y, i); dK2 = stk_materncov52_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_gausscov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_gausscov_iso ([param; 1.234], x, y); ***** error stk_gausscov_iso (); ***** error stk_gausscov_iso (param); ***** error stk_gausscov_iso (param, x); ***** test stk_gausscov_iso (param, x, y); ***** test stk_gausscov_iso (param, x, y, -1); ***** test stk_gausscov_iso (param, x, y, -1, false); ***** error stk_gausscov_iso (param, x, y, -2); ***** test stk_gausscov_iso (param, x, y, -1); ***** error stk_gausscov_iso (param, x, y, 0); ***** test stk_gausscov_iso (param, x, y, 1); ***** test stk_gausscov_iso (param, x, y, 2); ***** error stk_gausscov_iso (param, x, y, 3); ***** error stk_gausscov_iso (param, x, y, nan); ***** error stk_gausscov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_gausscov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_gausscov_iso (param, x, y, i); dK2 = stk_gausscov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov32_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error K = stk_materncov32_iso ([param; 1.234], x, y); ***** error stk_materncov32_iso (); ***** error stk_materncov32_iso (param); ***** error stk_materncov32_iso (param, x); ***** test stk_materncov32_iso (param, x, y); ***** test stk_materncov32_iso (param, x, y, -1); ***** test stk_materncov32_iso (param, x, y, -1, false); ***** error stk_materncov32_iso (param, x, y, -2); ***** test stk_materncov32_iso (param, x, y, -1); ***** error stk_materncov32_iso (param, x, y, 0); ***** test stk_materncov32_iso (param, x, y, 1); ***** test stk_materncov32_iso (param, x, y, 2); ***** error stk_materncov32_iso (param, x, y, 3); ***** error stk_materncov32_iso (param, x, y, nan); ***** error stk_materncov32_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov32_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov32_iso (param, x, y, i); dK2 = stk_materncov32_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_expcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_expcov_aniso (); ***** error K0 = stk_expcov_aniso (param); ***** error K0 = stk_expcov_aniso (param, x); ***** test K1 = stk_expcov_aniso (param, x, y); ***** test K2 = stk_expcov_aniso (param, x, y, -1); ***** test K3 = stk_expcov_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_expcov_aniso (param, u, v, -1); K2 = stk_expcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_expcov_aniso (param, x, y, -2); ***** test stk_expcov_aniso (param, x, y, -1); ***** error stk_expcov_aniso (param, x, y, 0); ***** test stk_expcov_aniso (param, x, y, 1); ***** test stk_expcov_aniso (param, x, y, 2); ***** error stk_expcov_aniso (param, x, y, 3); ***** error stk_expcov_aniso (param, x, y, nan); ***** error stk_expcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_expcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_expcov_aniso (param, x, y, i); dK2 = stk_expcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_aniso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_sphcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_sphcov_aniso (); ***** error K0 = stk_sphcov_aniso (param); ***** error K0 = stk_sphcov_aniso (param, x); ***** test K1 = stk_sphcov_aniso (param, x, y); ***** test K2 = stk_sphcov_aniso (param, x, y, -1); ***** test K3 = stk_sphcov_aniso (param, x, y, -1, false); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_sphcov_aniso (param, u, v, -1); K2 = stk_sphcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_sphcov_aniso (param, x, y, -2); ***** test stk_sphcov_aniso (param, x, y, -1); ***** error stk_sphcov_aniso (param, x, y, 0); ***** test stk_sphcov_aniso (param, x, y, 1); ***** test stk_sphcov_aniso (param, x, y, 2); ***** error stk_sphcov_aniso (param, x, y, 3); ***** error stk_sphcov_aniso (param, x, y, nan); ***** error stk_sphcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_sphcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_sphcov_aniso (param, x, y, i); dK2 = stk_sphcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 20 tests, 20 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_iso.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/covfcs/stk_materncov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.9]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error K = stk_materncov_iso ([param; 1.234], x, y); ***** error stk_materncov_iso(); ***** error stk_materncov_iso(param); ***** error stk_materncov_iso(param, x); ***** test stk_materncov_iso(param, x, y); ***** test stk_materncov_iso(param, x, y, -1); ***** test stk_materncov_iso(param, x, y, -1, false); ***** error stk_materncov_iso(param, x, y, -2); ***** test stk_materncov_iso(param, x, y, -1); ***** error stk_materncov_iso(param, x, y, 0); ***** test stk_materncov_iso(param, x, y, 1); ***** test stk_materncov_iso(param, x, y, 2); ***** test stk_materncov_iso(param, x, y, 3); ***** error stk_materncov_iso(param, x, y, 4); ***** error stk_materncov_iso(param, x, y, nan); ***** error stk_materncov_iso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov_iso (param, x, y); K2 = stk_materncov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:3, dK = stk_materncov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_iso(param, x, y); K2 = stk_materncov_iso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:3, dK1 = stk_materncov_iso(param, x, y, i); dK2 = stk_materncov_iso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 19 tests, 19 passed, 0 known failure, 0 skipped [inst/core/stk_cholcov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_cholcov.m ***** shared Q, K, L, U, epsi Q = 0.25 * hadamard(4); ***** test K = Q * diag ([1, 0.1, 0.01, 1e-7]) * Q'; [U, epsi] = stk_cholcov (K); ***** assert (istriu (U)) ***** assert (epsi == 0) ***** test K = Q * diag ([1, 0.1, 0.01, 1e-7]) * Q'; [L, epsi] = stk_cholcov (K, 'lower'); ***** assert (istril (L)) ***** assert (epsi == 0) ***** test K = Q * diag ([1, 0.1, 0.01, -1e-7]) * Q'; [U, epsi] = stk_cholcov (K); ***** assert (istriu (U)) ***** assert (epsi > 0) ***** test K = Q * diag ([1, 0.1, 0.01, -1e-7]) * Q'; [L, epsi] = stk_cholcov (K, 'lower'); ***** assert (istril (L)) ***** assert (epsi > 0) 12 tests, 12 passed, 0 known failure, 0 skipped [inst/core/@stk_kreq_qr/stk_kreq_qr.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/@stk_kreq_qr/stk_kreq_qr.m ***** test stk_test_class ('stk_kreq_qr') 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/stk_make_matcov.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_make_matcov.m ***** shared model, model2, x0, x1, n0, n1, d, Ka, Kb, Kc, Pa, Pb, Pc n0 = 20; n1 = 10; d = 4; model = stk_model (@stk_materncov52_aniso, d); model.lm = stk_lm_affine; model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); model2 = model; model2.lognoisevariance = log(0.01); x0 = stk_sampling_randunif (n0, d); x1 = stk_sampling_randunif (n1, d); ***** error [KK, PP] = stk_make_matcov (); ***** error [KK, PP] = stk_make_matcov (model); ***** test [Ka, Pa] = stk_make_matcov (model, x0); % (1) ***** test [Kb, Pb] = stk_make_matcov (model, x0, x0); % (2) ***** test [Kc, Pc] = stk_make_matcov (model, x0, x1); % (3) ***** error [KK, PP] = stk_make_matcov (model, x0, x1, pi); ***** assert (isequal (size (Ka), [n0 n0])); ***** assert (isequal (size (Kb), [n0 n0])); ***** assert (isequal (size (Kc), [n0 n1])); ***** assert (isequal (size (Pa), [n0 d + 1])); ***** assert (isequal (size (Pb), [n0 d + 1])); ***** assert (isequal (size (Pc), [n0 d + 1])); ***** assert (isequal (Kb, Ka)); ***** test [Ka, Pa] = stk_make_matcov (model2, x0); % (1') ***** test [Kb, Pb] = stk_make_matcov (model2, x0, x0); % (2') ***** error assert (isequal (Kb, Ka)); ***** assert (isequal (Pa, Pb)); ***** assert (isequal (Pa, Pc)); 18 tests, 18 passed, 0 known failure, 0 skipped [inst/core/stk_predict_leaveoneout.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_predict_leaveoneout.m ***** shared n, x_obs, z_obs, model n = 20; x_obs = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); model = stk_model (@stk_materncov32_iso); model.param = log ([1; 5]); ***** test % one output loo_pred = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); ***** test % two outputs [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); ***** test % heteroscedastic noise case model.lognoisevariance = (1 + rand (n, 1)) * 1e-6; [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/stk_model_update.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_model_update.m ***** test x1 = (linspace (0, 1, 15))'; z1 = sin (x1); x2 = (linspace (2, 3, 15))'; z2 = sin (x2); xt = (linspace (1, 2, 15))'; zt = sin (xt); % Prior model M0 = stk_model (@stk_materncov32_iso); M0.param = log ([1.0; 2.1]); M1 = stk_model_update (M0, x1, z1); M1 = stk_model_update (M1, x2, z2); % this calls @stk_model_gpposterior/... zp1 = stk_predict (M1, xt); M2 = stk_model_gpposterior (M0, [x1; x2], [z1; z2]); zp2 = stk_predict (M2, xt); assert (stk_isequal_tolabs (double (zp2 - zp1), zeros (15, 2), 1e-10)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/stk_predict.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/core/stk_predict.m ***** shared n, m, model, x0, x_obs, z_obs, x_prd, y_prd1, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = stk_sampling_regulargrid(n+m, d, [0; pi]); idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (double (x_obs)); x_prd = x0(idx_prd); model = stk_model (@stk_materncov32_iso); model.param = log ([1.0; 2.1]); ***** error y_prd1 = stk_predict (); ***** error y_prd1 = stk_predict (model); ***** test y_prd1 = stk_predict (model, x_prd); ***** error y_prd1 = stk_predict (model, data, x_prd); ***** test y_prd1 = stk_predict (model, x_obs, z_obs, x_prd); ***** error y_prd1 = stk_predict (model, [x_obs; x_obs], [z_obs; z_obs], x_prd); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); ***** test % nargout = 2, compute only variances [y_prd1, lambda] = stk_predict (model, x_obs, [], x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd1.mean))); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % predict on large set of locations x_prd = stk_sampling_regulargrid (1e5, 1, [0; pi]); y_prd = stk_predict (model, x_obs, z_obs, x_prd); ***** test % predict on an observation point % https://sourceforge.net/p/kriging/tickets/49/ [zp, lambda] = stk_predict (model, x_obs, z_obs, x_obs(4)); assert (isequal (z_obs(4), zp.mean)) assert (isequal (zp.var, 0)) lambda_ref = zeros (n, 1); lambda_ref(4) = 1; assert (isequal (lambda, lambda_ref)) 12 tests, 12 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ei_eval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampcrit_ei_eval.m ***** error EI = stk_sampcrit_ei_eval () % not enough args ***** error EI = stk_sampcrit_ei_eval (0) % not enough args ***** shared xi, zi, M_prior, xt, zp, EIref, EI1, EI2, EI3 xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1]; M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); xt = stk_sampling_regulargrid (20, 1, [0; 1]); zp = stk_predict (M_prior, xi, zi, xt); EIref = stk_distrib_normal_ei (min (zi), zp.mean, sqrt (zp.var), true); ***** test % Current syntax (STK 2.4.1 and later) EI1 = stk_sampcrit_ei_eval (zp.mean, sqrt (zp.var), min (zi)); ***** assert (isequal (EI1, EIref)) 4 tests, 4 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_akg_eval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampcrit_akg_eval.m ***** shared zc_mean, zc_std, zr_mean, zr_std, zcr_cov, AKG, nc xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1] - 10; ni = 4; M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_prior.lognoisevariance = 0.678; nc = 20; xc = stk_sampling_regulargrid (nc, 1, [0; 1]); [zp, ~, ~, K] = stk_predict (M_prior, xi, zi, [xi; xc]); ir = 1:ni; ic = ni + (1:nc); zc_mean = zp.mean(ic); zc_std = sqrt (zp.var(ic)); % reference grid: current evaluation points ("KGCP") zr_mean = zp.mean(ir); zr_std = sqrt (zp.var(ir)); zcr_cov = K(ic, ir); ***** test AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std, zcr_cov); ***** assert (isequal (size (AKG), [nc 1])) ***** assert (all (AKG >= 0)) ***** error AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/sampling/stk_halfpintl.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_halfpintl.m ***** test % case #1 a = 1; b = 1; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 1) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #2: two lines, slopes not equal, already sorted a = [1; -1]; b = [0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #3: same as #2, but not sorted a = [-1; 1]; b = [ 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #4: two lines, equal slopes, already sorted a = [0; 0]; b = [1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #5: same as #4, but not sorted a = [0; 0]; b = [2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #6: add a dominated line to #2 (the result does not change) a = [1; -1; 0]; b = [0; 2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #7: permutation of #6 a = [1; 0; -1]; b = [0; 1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #8: another permutation of #6 a = [0; 1; -1]; b = [1; 0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #9: same as #8, with some duplicated lines added a = [0; 1; 0; -1; 0; -1; 1]; b = [1; 0; 1; 2; 1; 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m ***** shared F, M, AKG M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_akg () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | reference_grid: -- (use current evaluation points) | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (isempty (F.reference_grid)) ***** assert (isempty (get (F, 'reference_grid'))) ***** error F.toto ***** error get (F, 'toto') ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error AKG = feval (F, 1.0); ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); ***** test F = stk_sampcrit_akg (); F = set (F, 'model', M); assert (isequal (F.model, M)); assert (isequal (size (F.zr_mean), [3 1])) % n x 1 assert (isequal (size (F.zr_std), [3 1])) % n x 1 assert (isequal (size (F.zr_lambdamu), [4 3])) % (n+1) x n (constant mean) ***** test F.model = []; % remove model assert (isempty (F.model)); assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) ***** test xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) F = | | model: -- (not instantiated) | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 assert (isequal (size (F.zr_std), [5 1])) % nr x 1 assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) F = | | model: | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (M) % ending ";" omitted on purpose, to test disp F = | | model: | reference_grid: -- (use current evaluation points) | ***** assert (isequal (F.model, M)) ***** test AKG = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (AKG), [3 1])) ***** assert (all (AKG >= 0)) ***** test [AKG2, zp] = feval (F, [1.0; 1.1; 1.2]); assert (isequal (AKG2, AKG)); assert (isa (zp, 'stk_dataframe') && isequal (size (zp), [3 2])) ***** shared F, xr xr = [1 1.5 2 2.5 3]'; ***** test F = stk_sampcrit_akg (stk_model ()); ***** assert (isempty (F.reference_grid)) ***** test F.reference_grid = xr; ***** assert (isequal (F.reference_grid, xr)) ***** assert (isempty (F.zr_mean)) ***** assert (isempty (F.zr_std)) ***** assert (isempty (F.zr_lambdamu)) ***** error AKG = feval (F, 1.0); ***** shared F, M, xr xr = [1 1.5 2 2.5 3]'; M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_akg (M, xr); ***** assert (isequal (F.model, M)) ***** assert (isequal (F.reference_grid, xr)) ***** assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_std), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) 37 tests, 37 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_vdc_rr2.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_vdc_rr2.m ***** error __stk_sampling_vdc_rr2__() % two inputs required ***** error __stk_sampling_vdc_rr2__(10) % two inputs required ***** error __stk_sampling_vdc_rr2__(10, 3, -1) % two inputs required ***** test n = 300; j = 25; x = __stk_sampling_vdc_rr2__(n, j); assert(isequal(size(x), [n 1])) ***** test x = __stk_sampling_vdc_rr2__(2000, 7); y = double (x(1998:2000, :)); yref = [0.849786281294525; 0.085080398941584; 0.555668634235701]; assert(stk_isequal_tolrel(y, yref, 1e-13)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ehvi_eval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampcrit_ehvi_eval.m ***** shared zr, zi zr = [1 1]; zi = [0.25 0.75; 0.5 0.5; 0.75 0.25]; ***** test % no improvement (1 computation) zp_mean = [0.6 0.6]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 0, 1e-12)); ***** test % guaranteed improvement (1 computation) zp_mean = [0 0]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 10 * 0.25 ^ 2)); ***** test % no improvement again (2 computations) zp_mean = [0.5 0.5; 0.6 0.6]; zp_std = [0 0; 0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, [0; 0], 1e-12)); ***** test % no observation -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = []; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); ***** test % no observation below zr -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = [2 2]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randunif.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_randunif.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 2, 2]; ***** error x = stk_sampling_randunif (); ***** test x = stk_sampling_randunif (n); ***** test x = stk_sampling_randunif (n, dim); ***** test x = stk_sampling_randunif (n, dim, box); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randunif (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randunif(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 8 tests, 8 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randomlhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_randomlhs.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_randomlhs (); ***** test x = stk_sampling_randomlhs (n); ***** test x = stk_sampling_randomlhs (n, dim); ***** test x = stk_sampling_randomlhs (n, dim, box); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randomlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); assert(stk_is_lhs(x, n, dim)); end 8 tests, 8 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m ***** shared F, M, EI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_ei () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error EI = feval (F, 1.0); ***** test F = stk_sampcrit_ei (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_ei (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_ei (M) % ending ";" omitted on purpose, to test disp F = | | model: | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (F.current_minimum == 1.234); ***** test EI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EI), [3 1])) ***** assert (all (EI >= 0)) ***** shared F ***** test F = stk_sampcrit_ei (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); 24 tests, 24 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_maximinlhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_maximinlhs.m ***** shared x, n, dim, box, niter n = 20; dim = 2; box = [0, 0; 1, 1]; niter = 1; ***** error x = stk_sampling_maximinlhs (); ***** test x = stk_sampling_maximinlhs (n); ***** test x = stk_sampling_maximinlhs (n, dim); ***** test x = stk_sampling_maximinlhs (n, dim, box); ***** test x = stk_sampling_maximinlhs (n, dim, box, niter); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_maximinlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs (n, dim); assert (isequal (size (x), [n dim])); u = double (x); u = u(:); assert (~ any (isnan (u) | isinf (u))); assert ((min (u) >= 0) && (max (u) <= 1)); assert (stk_is_lhs (x, n, dim)); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nesteddesign.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_nesteddesign.m ***** shared x, n, dim, box, niter, levels n = [23; 14; 5; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nesteddesign (); ***** test x = stk_sampling_nesteddesign (n); ***** test x = stk_sampling_nesteddesign (n, dim); ***** test x = stk_sampling_nesteddesign (n, dim, box); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter, levels); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end if lev == length(n) assert (stk_is_lhs (y, n(lev), dim, box)); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nesteddesign (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_halton_rr2.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_halton_rr2.m ***** error stk_sampling_halton_rr2 () % nargin < 1 ***** test n = 300; d = 25; x = stk_sampling_halton_rr2 (n, d); assert (isequal (size (x), [n d])) ***** test x = stk_sampling_halton_rr2 (1000, 3); y = double (x(end, :)); yref = [0.9052734375 0.028349336991312 0.74848]; assert (stk_isequal_tolrel (y, yref, 1e-13)); ***** test dim = 2; box = stk_hrect (dim); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, {})); ***** test dim = 2; cn = {'W', 'H'}; box = stk_hrect (dim, cn); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, cn)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/@stk_function/stk_function.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_function/stk_function.m ***** shared F ***** test F = stk_function () % ending ";" omitted on purpose, to test disp F = ***** error [F F]; % arrays of sampling criterion objects are not supported ***** error [F; F]; % idem ***** error get (F, 'toto'); % field does not exist ***** error y = feval (F, 1.0); % not implemented for "pure" function objects ***** error dummy = F{2}; % illegal indexing ***** error dummy = F(1.0); % feval not implemented ***** error dummy = F.toto; % field does not exist ***** error F{2} = 1.234; % illegal indexing ***** error F(5) = 1.234; % illegal indexing ***** error F.toto = 1.234; % field does not exist 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nestedlhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_nestedlhs.m ***** shared x, n, dim, box, niter, levels n = [48; 12; 4; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nestedlhs (); ***** test x = stk_sampling_nestedlhs (n); ***** test x = stk_sampling_nestedlhs (n, dim); ***** test x = stk_sampling_nestedlhs (n, dim, box); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter, levels); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); assert (stk_is_lhs (y, n(lev), dim, box)); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nestedlhs (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m ***** shared F, M, EQI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** test F = stk_sampcrit_eqi () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.quantile_order == 0.5) ***** assert (get (F, 'quantile_order') == 0.5) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** test F = set (F, 'quantile_order', 0.8); assert (F.quantile_order == 0.8) ***** error F.quantile_order = 1.1; ***** error F.quantile_order = -0.1; ***** error F.quantile_order = [1 2]; ***** error F.current_minimum = 3.333; % read-only ***** error F.quantile_value = 2.222; % read-only ***** error EQI = feval (F, 1.0); ***** test F = stk_sampcrit_eqi (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_eqi (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_eqi (M) % ending ";" omitted on purpose, to test disp F = | | model: | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 1.234, 10 * eps)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_eqi (M); ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 2.077997, 1e-5)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F ***** test F = stk_sampcrit_eqi (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); ***** shared F, M M = stk_model_gpposterior (stk_model (), [1 2 3]', [1.234 3 2]'); warning: Something went wrong during the optimization crit0 = 2.594852, crit_opt = 2.594852: crit0 < crit_opt ***** error F = stk_sampcrit_eqi (M, [], 0); ***** error F = stk_sampcrit_eqi (M, [], 1.5); ***** error F = stk_sampcrit_eqi (M, [], nan); ***** error F = stk_sampcrit_eqi (M, [], [10 20]); ***** test F = stk_sampcrit_eqi (M, [], 10); ***** assert (isequal (F.quantile_order, 0.5)); ***** assert (isequal (F.point_batch_size, 10)); ***** error F = stk_sampcrit_eqi (M, 0.8, 0); ***** error F = stk_sampcrit_eqi (M, 0.8, 1.5); ***** error F = stk_sampcrit_eqi (M, 0.8, nan); ***** error F = stk_sampcrit_eqi (M, 0.8, [10 20]); ***** test F = stk_sampcrit_eqi (M, 0.8, 5); ***** assert (isequal (F.quantile_order, 0.8)); ***** assert (isequal (F.point_batch_size, 5)); ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); F = stk_sampcrit_eqi (M); ***** test F.point_batch_size = 10; % numeric ***** assert (isequal (F.point_batch_size, 10)) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = @(x, n) 100 - n; % function handle ***** assert (isa (F.point_batch_size, 'function_handle')) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = 'sin'; % char ***** assert (isa (F.point_batch_size, 'function_handle')) 63 tests, 63 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_regulargrid.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_regulargrid.m ***** shared x, n, dim, box n = 9; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_regulargrid (); ***** test x = stk_sampling_regulargrid (n); ***** test x = stk_sampling_regulargrid (n, dim); ***** test x = stk_sampling_regulargrid (n, dim, box); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isa (x, 'stk_factorialdesign')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_regulargrid (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:3, n = 3^dim; x = stk_sampling_regulargrid(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end ***** test nn = [3 4 5]; for dim = 1:3, x = stk_sampling_regulargrid(nn(1:dim), dim); assert(isequal(size(x), [prod(nn(1:dim)) dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_olhs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/sampling/stk_sampling_olhs.m ***** shared x, n, d, box, permut n = 5; d = 2; box = [0 0; 1, 1]; permut = 1:2; ***** error x = stk_sampling_olhs(); ***** test x = stk_sampling_olhs(n); ***** test x = stk_sampling_olhs(n, d); ***** test x = stk_sampling_olhs(n, d, box); ***** test x = stk_sampling_olhs(n, d, box, permut); ***** error x = stk_sampling_olhs(n, d, box, permut, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_olhs (n, d, box); assert (isequal (x.colnames, cn)); ***** test for r = 1:5 n = 2 ^ (r + 1) + 1; d = 2 * r; x = stk_sampling_olhs (n, d); assert (isequal (size (x), [n d])); box = repmat ([-1; 1], 1, d); assert (stk_is_lhs (x, n, d, box)); x = double (x); w = x' * x; assert (stk_isequal_tolabs (w / w(1,1), eye (d))); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/vertcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/vertcat.m ***** shared d, x, y d = 10; x = stk_hrect (d); y = double (x); ***** test z = vertcat (x, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (x, y); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (y, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_hrect.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_hrect.m ***** test stk_test_class ('stk_hrect') ***** shared dom ***** test dom = stk_hrect ([-1; 1], {'x'}); ***** assert (isequal (dom.colnames, {'x'})) ***** assert (isequal (dom.rownames, {'lower_bounds'; 'upper_bounds'})) ***** assert (isequal (dom.data, [-1; 1])) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_dataframe.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'lower_bounds'; 'upper_bounds'}; x = stk_hrect ([0 0; 1 1], cn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/ismember.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/ismember.m ***** shared n, box n = 5; box = stk_hrect (n); ***** assert (ismember (box(1, :), box)) ***** assert (ismember (box(2, :), box)) ***** assert (ismember (.5 * ones (1, 5), box)) ***** assert (~ ismember (box(1, :) - 1, box)) ***** assert (~ ismember (box(2, :) + 1, box)) ***** test y = double (box); y = [y; y + 2]; assert (isequal (ismember (y, box), [1; 1; 0; 0])) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = stk_hrect ([2; 3]); x = 2 + rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/subsref.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/subsref.m ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(:, [1 3 4]); assert (strcmp (class (B), 'stk_hrect')); assert (isequal (double (B), [0 0 0; 1 3 4])); ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(1, :); assert (strcmp (class (B), 'stk_dataframe')); assert (isequal (double (B), [0 0 0 0])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/horzcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/horzcat.m ***** shared d, x1, x2, x3 d = 10; x1 = stk_hrect (d); x2 = double (x1); x3 = [1:d; 0:(d-1)]; % illegal bounds ***** test y1 = horzcat (x1, x1); assert (isequal (size (y1), [2 2*d])); assert (strcmp (class (y1), 'stk_hrect')); ***** test y2 = horzcat (x1, x2); assert (isequal (size (y2), [2 2*d])); assert (strcmp (class (y2), 'stk_hrect')); ***** test y3 = horzcat (x2, x1); assert (isequal (size (y3), [2 2*d])); assert (strcmp (class (y3), 'stk_hrect')); ***** test lastwarn ('') y4 = horzcat (x1, x3); assert (isequal (size (y4), [2 2*d])); assert (strcmp (class (y4), 'stk_dataframe')); [warn_msg, warn_id] = lastwarn (); assert (strcmp (warn_id, 'STK:stk_hrect:horzcat:IllegalBounds')) warning: Illegal bounds, the result is not an stk_hrect object. warning: called from horzcat at line 47 column 9 __test__ at line 4 column 5 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 526 column 31 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_hrect/stk_boundingbox.m ***** shared x, y lb = rand (1, 5); ub = lb + 1; cn = {'a', 'b', 'c', 'd', 'e'}; x = stk_hrect ([lb; ub], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y, x)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/uminus.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/uminus.m ***** test x = stk_factorialdesign ({1:3, 1:2}); y = stk_factorialdesign ({-(1:3), -(1:2)}); assert (isequal (-x, y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_rescale.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 3], [0 3]}); z = stk_rescale (x, [1 5; 2 6], [0 0; 3 3]); assert (stk_isequal_tolabs (y, z)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_dataframe.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'a'; 'b'; 'c'; 'd'}; x = stk_factorialdesign ({1:2, 1:2}, cn, rn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'; 'cc'; 'dd'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ndgrid.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/ndgrid.m ***** shared data data = stk_factorialdesign ({[0 1], [5 6 7]}); ***** test % nargout = 0 ndgrid (data); assert (isequal (ans, [0 0 0; 1 1 1])); ***** test % nargout = 1 x = ndgrid (data); assert (isequal (x, [0 0 0; 1 1 1])); ***** test % nargout = 2 [x, y] = ndgrid (data); assert (isequal ({x, y}, {[0 0 0; 1 1 1], [5 6 7; 5 6 7]})); ***** error % nargout = 3 [x, y, z] = ndgrid (data); ***** test data = stk_factorialdesign ({[], []}); [x, y] = ndgrid (data); assert (isequal ({x, y}, {[], []})); ***** test data = stk_factorialdesign ({[1:3]}); x = ndgrid (data); assert (isequal (x, [1; 2; 3])); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ismember.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/ismember.m ***** shared A, B, BB, b i_max = 10; n = 100; d = 5; A = randi (i_max, n, d); levels = repmat ({1:i_max}, 1, d); levels{4} = 1:2:i_max; B = stk_factorialdesign (levels); BB = double (B); ***** test b = ismember (A, B); ***** assert (isequal (b, ismember (A, BB))); ***** test b = ismember (A, B, 'rows'); ***** assert (isequal (b, ismember (A, BB, 'rows'))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_normalize.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 1], [0 1]}); assert (stk_isequal_tolabs (stk_normalize (x), y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/fieldnames.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/fieldnames.m ***** test x = stk_factorialdesign ({0:1, 3:5}, {'u' 'v'}); fn1 = sort (fieldnames (x)); fn2 = {'colnames'; 'data'; 'info'; 'levels'; ... 'rownames'; 'sample_size'; 'stk_dataframe'; 'u'; 'v'}; assert (isequal (fn1, fn2)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_factorialdesign.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_factorialdesign.m ***** test stk_test_class ('stk_factorialdesign') ***** test % constructor with two factors + column names x = stk_factorialdesign ({[0 1], [1 2 3]}, {'a', 'b'}); assert (isequal(x.colnames, {'a', 'b'})); assert (isequal(get (x, 'colnames'), {'a', 'b'})); ***** error stk_factorialdesign ('bouh'); ***** error stk_factorialdesign ({{'a' 'b'}}); ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_sampling_regulargrid (3^2, 2); ***** test format rat; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format long; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format short; disp (x); format (fmt); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test disp (stk_sampling_regulargrid (0^1, 1)); Empty data frame with 0 rows and 0 columns ***** test disp (stk_sampling_regulargrid (0^2, 2)); Empty data frame with 0 rows and 0 columns ***** test display (x); x = <9x2 stk_factorialdesign array> : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** error length (stk_sampling_regulargrid (7^2, 2)) % not defined ***** shared x x = stk_factorialdesign ({[0 1], [0 1]}); ***** assert (isequal (x(2:end, :), x(2:4, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:4, 2))) ***** error x(1:end, 1:end, 1:end) ***** shared x, y x = stk_sampling_regulargrid (3^2, 2); y = x; ***** test %%%% vercat z = vertcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% same thing, using cat(1, ...) z = cat (1, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% horzcat y.colnames = {'y1' 'y2'}; z = horzcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** test %%%% same thing, using cat (2, ...) z = cat (2, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** error cat (3, x, y) ***** shared x, t x = stk_sampling_regulargrid (3^2, 2); t = double (x); ***** assert (isequal (apply (x, 1, @sum), sum (t, 1))) ***** assert (isequal (apply (x, 2, @sum), sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** assert (isequal (apply (x, 1, @min, []), min (t, [], 1))) ***** assert (isequal (apply (x, 2, @min, []), min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** assert (isequal (min (x), min (t))) ***** assert (isequal (max (x), max (t))) ***** assert (isequal (std (x), std (t))) ***** assert (isequal (var (x), var (t))) ***** assert (isequal (sum (x), sum (t))) ***** assert (isequal (mean (x), mean (t))) ***** assert (isequal (mode (x), mode (t))) ***** assert (isequal (prod (x), prod (t))) ***** assert (isequal (median (x), median (t))) ***** shared x1, x2, x3, u1, u2, u3 x1 = stk_sampling_regulargrid ([4 3], 2); u1 = double (x1); x2 = stk_sampling_regulargrid ([3 4], 2); u2 = double (x2); x3 = x1 + 1; u3 = u1 + 1; ***** test z = bsxfun (@plus, x1, u2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, u1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, x1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = min (x1, x2); assert (isequal (double (z), min (u1, u2))); ***** test z = max (x1, x2); assert (isequal (double (z), max (u1, u2))); ***** error z = min (x1, x2, 1); ***** error z = max (x1, x2, 1); ***** test z = x1 + x2; assert (isequal (double (z), u1 + u2)); ***** test z = x1 - x2; assert (isequal (double (z), u1 - u2)); ***** test z = x1 .* x2; assert (isequal (double (z), u1 .* u2)); ***** test z = x3 .\ x2; assert (isequal (double (z), u3 .\ u2)); ***** test z = x2 ./ x3; assert (isequal (double (z), u2 ./ u3)); ***** test z = x3 .^ x2; assert (isequal (double (z), u3 .^ u2)); ***** test z = realpow (x3, x2); assert (isequal (double (z), realpow (u3, u2))); ***** test z = (x1 == x2); assert (isequal (double (z), (u1 == u2))); ***** test z = (x1 ~= x2); assert (isequal (double (z), (u1 ~= u2))); ***** test z = (x1 <= x2); assert (isequal (double (z), (u1 <= u2))); ***** test z = (x1 >= x2); assert (isequal (double (z), (u1 >= u2))); ***** test z = (x1 < x2); assert (isequal (double (z), (u1 < u2))); ***** test z = (x1 > x2); assert (isequal (double (z), (u1 > u2))); ***** test z = x1 & x2; assert (isequal (double (z), u1 & u2)); ***** test z = x1 | x2; assert (isequal (double (z), u1 | u2)); ***** test z = xor (x1, x2); assert (isequal (double (z), xor (u1, u2))); ***** shared x x = stk_factorialdesign ({[0 1], [0 1 2]}); ***** assert (strcmp (class (x'), 'stk_dataframe')) ***** assert (strcmp (class (x.'), 'stk_dataframe')) 60 tests, 60 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_factorialdesign/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_factorialdesign ({[1 2], [3 4 5], [0 2 8]}, cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y, stk_hrect ([1 3 0; 2 5 8], cn))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_feval.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_feval.m ***** shared f, xt f = @(x)(- (0.7 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); xt = stk_sampling_regulargrid (20, 1, [0; 1]); ***** error yt = stk_feval (); ***** error yt = stk_feval (f); ***** test yt = stk_feval (f, xt); ***** test yt = stk_feval (f, xt, false); ***** test yt = stk_feval (f, xt, false, false); ***** test yt = stk_feval (f, xt, false, false, false); ***** test N = 15; xt = stk_sampling_regulargrid (N, 1, [0; 1]); yt = stk_feval (f, xt); assert (isequal (size (yt), [N 1])); ***** test x = stk_dataframe ([1; 2; 3], {'x'}, {'a'; 'b'; 'c'}); y = stk_feval (@(u)(2 * u), x); assert (isequal (y.data, [2; 4; 6])); assert (isequal (y.rownames, {'a'; 'b'; 'c'})); ***** shared t, z_ref, n n = 20; t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_ref = [sin(t.data) cos(t.data)]; ***** test t.colnames = {'time'}; z = stk_feval ({@sin, @cos}, t); assert (isa (z, 'stk_dataframe')); assert (isequal (z.data, z_ref)); ***** test F = @(x)([sin(x) cos(x)]); z = stk_feval (F, t); assert (isequal (z.data, z_ref)); ***** test t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); F = {'sin', 'cos'}; z = stk_feval (F, t); assert (isequal (z.data, [sin(t.data) cos(t.data)])); assert (isequal (z.colnames, {'sin' 'cos'})); ***** test % vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t.^2 + (cos ((t - 1).*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); ***** test % not vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t^2 + (cos ((t - 1)*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t, [], [], false); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); 13 tests, 13 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = [2; 3]; x = box(1) + diff (box) * rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_get_sample_size.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_get_sample_size.m ***** assert (stk_get_sample_size ([1 2; 3 4; 5 6]) == 3); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = [0 3 2; 1 4 1; 7 0 2]; ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y.data, [0 0 1; 7 4 2])); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_length.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/generic/stk_length.m ***** assert (isequal (stk_length ([1 2; 3 4; 5 6]), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isfinite.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/isfinite.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isfinite (x); assert (islogical (v) && isequal (v, isfinite (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atanh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/atanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atanh (x); assert (strcmp (class (v), class (u)) && isequal (v, atanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/var.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/var.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (var(df1), var(x1))) ***** assert (isequal (var(df1, 0, 1), var(x1))) ***** assert (isequal (var(df1, 0, 2), var(x1, 0, 2))) ***** assert (isequal (var(df1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 2), var(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cat.m ***** shared u, v, x, y u = rand(3, 2); v = rand(3, 2); x = stk_dataframe(u); y = stk_dataframe(v); ***** test % vertical z = cat(1, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u; v])); ***** error z = cat(3, x, y); ***** test % horizontal y = stk_dataframe(v, {'y1' 'y2'}); z = cat(2, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'' '' 'y1' 'y2'}))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/std.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/std.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (std(df1), std(x1))) ***** assert (isequal (std(df1, 0, 1), std(x1))) ***** assert (isequal (std(df1, 0, 2), std(x1, 0, 2))) ***** assert (isequal (std(df1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 2), std(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/realpow.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/realpow.m ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log (x); assert (strcmp (class (v), class (u)) && isequal (v, log (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosd.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/acosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosd (x); assert (strcmp (class (v), class (u)) && isequal (v, acosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosh (x); assert (strcmp (class (v), class (u)) && isequal (v, cosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/minus.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/minus.m ***** test stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@minus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_sprintf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_sprintf.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.276529 0.772550 * : 0.758092 0.372915 * : 0.554400 0.853870 ***** test format long; disp (x); : ---------------- ---------------- * : 0.27652859998076 0.77254996439016 * : 0.75809195770201 0.37291463519856 * : 0.55439973543694 0.85387035786362 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.276529 0.772550 * : 0.758092 0.372915 * : 0.554400 0.853870 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ldivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/ldivide.m ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), pi); ***** error stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/vertcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/vertcat.m ***** shared u, v u = rand (3, 2); v = rand (3, 2); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names this time x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {}, {'d'; 'e'; 'f'}); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); assert (all (strcmp (z.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'}))); ***** test % the same, with row names only for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % incompatible variable names u = rand (3, 1); x = stk_dataframe (u, {'x'}); v = rand (3, 1); y = stk_dataframe (v, {'y'}); z = vertcat (x, y); assert (isequal (z.colnames, {})); warning: Incompatible column names ! The output of vertcat will have no column names. warning: called from vertcat at line 82 column 9 __test__ at line 5 column 4 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 758 column 31 ***** test x = stk_dataframe (u); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test y = stk_dataframe (v); z = vertcat (u, y); assert (isa (z, 'stk_dataframe') && (isequal (double (z), [u; v]))); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y, u, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v; u; v])); ***** shared x, y x = stk_dataframe (rand (2, 3), {'a', 'b', 'c'}); y = stk_dataframe (rand (3, 2), {'a', 'b'}); y = horzcat (y, rand(3, 1)); % last column name is missing ***** test z = vertcat (x, y); assert (isequal (z.colnames, {'a' 'b' 'c'})) ***** test z = vertcat (y, x); assert (isequal (z.colnames, {'a' 'b' 'c'})) 10 tests, 10 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plot.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/plot.m ***** test % plot with x as a vector and z as a (univariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe(sin(x)); figure; plot(x, z); close(gcf); warning: using the gnuplot graphics toolkit is discouraged The gnuplot graphics toolkit is not actively maintained and has a number of limitations that are unlikely to be fixed. Communication with gnuplot uses a one-directional pipe and limited information is passed back to the Octave interpreter so most changes made interactively in the plot window will not be reflected in the graphics properties managed by Octave. For example, if the plot window is closed with a mouse click, Octave will not be notified and will not update its internal list of open figure windows. The qt toolkit is recommended instead. ***** test % plot with x as a vector and z as a (multivariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe([sin(x) cos(x)], {'sin' 'cos'}); figure; plot(x, z); close(gcf); ***** test % plot with x as a dataframe and z as a vector x = stk_dataframe(linspace(0, 2*pi, 30)'); z = sin(double(x)); figure; plot(x, z); close(gcf); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sqrt.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sqrt.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sqrt (x); assert (strcmp (class (v), class (u)) && isequal (v, sqrt (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/length.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/length.m ***** error length (stk_dataframe ([1 2; 3 4; 5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tanh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/tanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tanh (x); assert (strcmp (class (v), class (u)) && isequal (v, tanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/min.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/min.m ***** test stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('min', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (min(df1), min(x1))) ***** assert (isequal (min(df1, [], 1), min(x1))) ***** assert (isequal (min(df1, [], 2), min(x1, [], 2))) ***** error (min(df1, df1, 2)) ***** test x = stk_dataframe ([5; 2; 4]); [M, k] = min (x); assert ((M == 2) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asind.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/asind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asind (x); assert (strcmp (class (v), class (u)) && isequal (v, asind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mldivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mldivide.m ***** test x1_data = [57 7; 2 0]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'w' 'z'}, {'a'; 'b'}); y = x2 \ x1; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'x'; 'y'}, {'w'; 'z'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 \ x; ***** assert (isequal (y, stk_dataframe (y_data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = x \ 3; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acos.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/acos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acos (x); assert (strcmp (class (v), class (u)) && isequal (v, acos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/unique.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/unique.m ***** test cn = {'u' 'v' 'w'}; x = stk_dataframe (rand (4, 3), cn); y = [x; x]; z = unique (y, 'rows'); assert (isequal (z.colnames, cn)); assert (isequal (z.data, unique (x.data, 'rows'))); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/power.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/power.m ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsasgn.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/subsasgn.m ***** shared x, s, t, data x = stk_dataframe (rand (3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x.rownames = s; assert (isequal (get (x, 'rownames'), s)) ***** test x.colnames = t; assert (isequal (get (x, 'rownames'), s)) assert (isequal (get (x, 'colnames'), t)) ***** test x.rownames{2} = 'dudule'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), t)) ***** test x.colnames{1} = 'martha'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), {'martha' 'yy'})) ***** test data = stk_dataframe (zeros(3, 2), {'x1' 'x2'}); u = rand(3, 1); data.x2 = u; assert (isequal (double (data), [zeros(3, 1) u])) ***** test data = stk_dataframe (zeros (3, 2), {'x1' 'x2'}); data.x2(3) = 27; assert (isequal (double (data), [0 0; 0 0; 0 27])) ***** error data.toto = rand (3, 1); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test x(:, 2) = []; assert (isequal (size (x), [4 2])) assert (isequal (double (x), [1 9; 2 10; 3 11; 4 12])) assert (isequal (get (x, 'colnames'), {'u' 'w'})) assert (isempty (get (x, 'rownames'))) ***** test x(2, :) = []; assert (isequal (size (x), [3 2])) assert (isequal (double (x), [1 9; 3 11; 4 12])) assert (isempty (get (x, 'rownames'))) ***** test x.rownames = {'a'; 'b'; 'c'}; x(2, :) = []; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 9; 4 12])) assert (isequal (x.rownames, {'a'; 'c'})) ***** test % change one value with matrix-style indexing x(1, 2) = 11; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 11; 4 12])) ***** test % change one value with linear indexing x(3) = 13; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 13; 4 12])) ***** assert (isequal (double (x(:, :)), [1 13; 4 12])); ***** test % assignment to a variable that doesn't exist A = stk_dataframe (7.1); clear B; B(2) = A; assert (strcmp (class (B), 'stk_dataframe')) assert (isequal (B.data, [0 7.1])); ***** test % repmat x = stk_dataframe (1); y = repmat (x, 2, 3); assert (isa (y, 'stk_dataframe')); assert (isequal (y.data, ones (2, 3))); ***** test x(:, :) = []; assert (isempty (x)); ***** test % Delete the only row of a one-row dataframe y1 = stk_dataframe ([1.2 3.33], {'mean', 'var'}); y1(1, :) = []; % Remove the only row of data assert (isequal (size (y1), [0 2])) assert (isequal (y1.colnames, {'mean', 'var'})) y11 = get (y1, 'mean'); assert (isempty (y11)); ***** error x{1} = 2; ***** error x(1, 2) = []; ***** error x(1, 2).a = 3; ***** shared x x = stk_dataframe((1:5)'); ***** test x(2) = 0; assert (isequal (double (x), [1; 0; 3; 4; 5])); ***** test x(3) = []; assert (isequal (double (x), [1; 0; 4; 5])); ***** test x(3, 1) = 0; assert (isequal(double(x), [1; 0; 0; 5])); ***** error x(3, 1, 1) = 297; ***** test % create a new row and a new column through subsasgn() x = stk_dataframe (rand (5, 2)); x(6, 3) = 7; assert(isequal(size(x), [6, 3])); ***** test x = stk_dataframe ([]); x.colnames{2} = 'v'; x.rownames{2} = 'b'; assert (isequal (x.rownames, {''; 'b'})); assert (isequal (x.colnames, {'' 'v'})); assert (isequal (size (x.data), [2 2]) && (all (isnan (x.data(:))))) ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test % change one column using ':', plain numeric argument y = [0; 9; 0; 9]; z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2).data, y)); ***** test % change one column using ':', skt_dataframe argument y = stk_dataframe ([0; 9; 0; 9], {'y'}); z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2), y)); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), [], {'a'; 'b'; 'c'; 'd'}); ***** test % change one row using ':', plain numeric argument y = [7 7 7]; z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :).data, y)); ***** test % change one row using ':', skt_dataframe argument y = stk_dataframe ([7 7 7], [], {'y'}); z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :), y)); ***** shared x x = stk_dataframe (zeros (2), {'u' 'v'}); ***** test % first column x(1:2) = 1; y = stk_dataframe ([1 0; 1 0], {'u' 'v'}); assert (isequal (x, y)); ***** test % one more element x(1:3) = 2; y = stk_dataframe ([2 2; 2 0], {'u' 'v'}); assert (isequal (x, y)); ***** error % too many elements x(1:5) = 3; ***** shared x x = stk_dataframe (randn (3, 3)); ***** test x.colnames{2} = 'y'; ***** assert (isequal (x.colnames, {'' 'y' ''})); ***** test x.rownames{2} = 'b'; ***** assert (isequal (x.rownames, {''; 'b'; ''})); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/abs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/abs.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = abs (x); assert (strcmp (class (v), class (u)) && isequal (v, abs (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asinh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/asinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asinh (x); assert (strcmp (class (v), class (u)) && isequal (v, asinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mrdivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mrdivide.m ***** test x1_data = [8 7; 58 49]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'x' 'y'}, {'u'; 'v'}); y = x1 / x2; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'u'; 'v'}, {'a'; 'b'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = x / 3; ***** assert (isequal (y, stk_dataframe ([1 1; 2 1; 3 4], {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = 3 / x; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/size.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/size.m ***** shared x x = stk_dataframe([1 2; 3 4; 5 6]); ***** assert (isequal (size(x), [3 2])) ***** assert (numel(x) == 1) ***** assert (ndims(x) == 2) ***** test size(x); % force exploration of branch nargout == 0 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/quantile.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/quantile.m ***** shared x1, df1, p x1 = rand (9, 3); df1 = stk_dataframe (x1, {'a', 'b', 'c'}); p = 0.95; ***** assert (isequal (quantile (df1, p), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 1), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 2), quantile (x1, p, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_rescale.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_rescale.m ***** test u = rand(5, 1) * 2; x = stk_dataframe(u); y = stk_rescale(x, [0; 2], [0; 3]); assert (isa (y, 'stk_dataframe') && isequal(double(y), u * 3/2)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plus.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/plus.m ***** test stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@plus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/apply.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/apply.m ***** shared x, t, u t = rand (3, 2); x = stk_dataframe (t); ***** test u = apply (x, 1, @sum); ***** assert (isequal (u, sum (t, 1))) ***** test u = apply (x, 2, @sum); ***** assert (isequal (u, sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** test u = apply (x, 1, @min, []); ***** assert (isequal (u, min (t, [], 1))) ***** test u = apply (x, 2, @min, []); ***** assert (isequal (u, min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** test t = [1; 3; 2]; x = stk_dataframe (t); [M, k] = apply (x, 1, @max, []); assert ((M == 3) && (k == 2)); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/reshape.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/reshape.m ***** test x = stk_dataframe (randn (10, 3)); y = reshape (x, 5, 6); assert (isa (y, 'stk_dataframe') && isequal (size (y), [5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sin.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sin (x); assert (strcmp (class (v), class (u)) && isequal (v, sin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/display.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/display.m ***** test display (stk_dataframe (rand (3, 2))); = <3x2 stk_dataframe array> : -------- -------- * : 0.543672 0.758729 * : 0.200512 0.361814 * : 0.368572 0.518575 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tand.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/tand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tand (x); assert (strcmp (class (v), class (u)) && isequal (v, tand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asin.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/asin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asin (x); assert (strcmp (class (v), class (u)) && isequal (v, asin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_dataframe.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_dataframe.m ***** test stk_test_class ('stk_dataframe') ***** test % default constructor x = stk_dataframe (); assert (isa (x, 'stk_dataframe') && isequal (size (x), [0 0])) ***** test y = stk_dataframe (rand (3, 2)); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, pi); ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, [], {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, {}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}); y = stk_dataframe (x, [], {'a' 'b' 'c' 'd' 'e' 'f'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}, []); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, pi); ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe ([], {'a', 'b'}); assert (isequal (size (x), [0 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {})); ***** test x = stk_dataframe ([], {'a', 'b'}, {'toto'}); assert (isequal (size (x), [1 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {'toto'})); ***** shared x ***** test x = stk_dataframe (randn (10, 1), 'NOx'); assert (isequal (x.colnames, {'NOx'})); ***** test y = stk_dataframe (x, 'toto'); assert (isequal (y.colnames, {'toto'})); ***** test x = stk_dataframe (randn (1, 2), {}, 'aaa'); assert (isequal (x.rownames, {'aaa'})); ***** test y = stk_dataframe (x, {}, 'tata'); assert (isequal (y.rownames, {'tata'})); 24 tests, 24 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tan.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/tan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tan (x); assert (strcmp (class (v), class (u)) && isequal (v, tan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/max.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/max.m ***** test stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('max', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (max(df1), max(x1))) ***** assert (isequal (max(df1, [], 1), max(x1))) ***** assert (isequal (max(df1, [], 2), max(x1, [], 2))) ***** error (max(df1, df1, 2)) ***** test x = stk_dataframe ([1; 3; 2]); [M, k] = max (x); assert ((M == 3) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mode.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mode.m ***** shared x1, df1 x1 = floor(3 * rand(9, 3)); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mode(df1), mode(x1))) ***** assert (isequal (mode(df1, 1), mode(x1))) ***** assert (isequal (mode(df1, 2), mode(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ismember.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/ismember.m ***** shared u, x, u1, x1, u2, x2 u = rand (10, 4); x = stk_dataframe (u); x1 = x(1, :); u1 = double (x1); u2 = - ones (1, 4); x2 = stk_dataframe (u2); ***** assert (ismember (u1, x, 'rows')) ***** assert (ismember (x1, u, 'rows')) ***** assert (ismember (x1, x, 'rows')) ***** assert (~ ismember (u2, x, 'rows')) ***** assert (~ ismember (x2, u, 'rows')) ***** assert (~ ismember (x2, x, 'rows')) ***** test [b, idx] = ismember ([x2; x1; x1], x, 'rows'); assert (isequal (b, [false; true; true])); assert (isequal (idx, [0; 1; 1])) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/disp.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/disp.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.544617 0.496830 * : 0.467858 0.961494 * : 0.639120 0.793962 ***** test format long; disp (x); : ---------------- ---------------- * : 0.54461739448529 0.49682951150259 * : 0.46785792686690 0.96149443601637 * : 0.63912005563471 0.79396152591242 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.544617 0.496830 * : 0.467858 0.961494 * : 0.639120 0.793962 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_normalize.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_normalize.m ***** test u = rand (6, 2) * 2; x = stk_dataframe (u); y = stk_normalize (x); assert (isa (y, 'stk_dataframe') ... && stk_isequal_tolabs (double (y), stk_normalize (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log10.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log10.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log10 (x); assert (strcmp (class (v), class (u)) && isequal (v, log10 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsref.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/subsref.m ***** shared x, s, t, data x = stk_dataframe(rand(3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x = set(x, 'rownames', s); assert (isequal (x.rownames, s)) assert (isequal (x.rownames{2}, 'b')) ***** test x = set(x, 'colnames', t); assert (isequal (x.rownames, s)) assert (isequal (x.colnames, t)) assert (isequal (x.colnames{2}, 'yy')) ***** shared u, data u = rand(3, 2); data = stk_dataframe(u, {'x1', 'x2'}); ***** assert (isequal (data.x2, u(:, 2))) ***** assert (data.x2(3) == u(3, 2)) ***** error t = data.toto; ***** error t = data(1, 1).zzz; % illegal multilevel indexing ***** error t = data(1, 1, 1); % too many indices ***** error t = data{1}; % curly braces not allowed ***** test % select rows and columns x = stk_dataframe (reshape (1:15, 5, 3), {'u' 'v' 'w'}); assert (isequal (x([3 5], 2), stk_dataframe ([8; 10], {'v'}))); ***** shared u, data u = rand(3, 1); data = stk_dataframe(u, {'x'}); ***** assert (isequal (data.x, u)) ***** assert (isequal (double (data), u)) ***** assert (isequal (double (data(2)), u(2))) ***** assert (isequal (double (data(3, 1)), u(3))) ***** error t = data(1, 1, 1); % too many indices ***** test x = stk_dataframe (randn (2, 2), {'u' 'v'}); y = x ([], :); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [0 2])); assert (isequal (y.colnames, {'u' 'v'})); ***** test x = stk_dataframe (randn (2, 2), [], {'a' 'b'}); y = x (:, []); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [2 0])); assert (isequal (y.rownames, {'a'; 'b'})); 16 tests, 16 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/fieldnames.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/fieldnames.m ***** test x = stk_dataframe (rand (3, 2), {'u' 'v'}); assert (isequal (sort (fieldnames (x)), ... {'colnames'; 'data'; 'info'; 'rownames'; 'sample_size'; 'u'; 'v'})); ***** test x = stk_dataframe (rand (3, 2)); x.rownames(2:3) = {'aa', 'bb'}; x.colnames{2} = 'toto'; assert (isequal (fieldnames (x), ... {'toto'; 'aa'; 'bb'; 'data'; 'info'; ... 'rownames'; 'colnames'; 'sample_size'})); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ctranspose.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/ctranspose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/horzcat.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/horzcat.m ***** shared u, v u = rand(3, 2); v = rand(3, 2); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}, {'a'; 'b'; 'c'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test % incompatible row names x = stk_dataframe (u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {'y1' 'y2'}, {'a'; 'b'; 'd'}); z = horzcat (x, y); assert (isequal (z.rownames, {})); warning: Incompatible row names ! The output of horzcat will have no row names. warning: called from horzcat at line 73 column 9 __test__ at line 5 column 4 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1046 column 31 ***** test x = stk_dataframe (u); z = horzcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test y = stk_dataframe (v); z = horzcat (u, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y, u, v); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v u v])); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isinf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/isinf.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isinf (x); assert (islogical (v) && isequal (v, isinf (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sinh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sinh (x); assert (strcmp (class (v), class (u)) && isequal (v, sinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log2.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log2.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log2 (x); assert (strcmp (class (v), class (u)) && isequal (v, log2 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosd.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosd (x); assert (strcmp (class (v), class (u)) && isequal (v, cosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosh.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/acosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosh (x); assert (strcmp (class (v), class (u)) && isequal (v, acosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/rdivide.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/rdivide.m ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/exp.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/exp.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = exp (x); assert (strcmp (class (v), class (u)) && isequal (v, exp (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/logical.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/logical.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = logical (x); assert (strcmp (class(v), 'logical') && isequal (v, logical (u))) ***** test u = (rand (4, 3) < 0.5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, u)) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, logical (u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mean.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mean.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mean(df1), mean(x1))) ***** assert (isequal (mean(df1, 1), mean(x1))) ***** assert (isequal (mean(df1, 2), mean(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_get_sample_size.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_get_sample_size.m ***** test x = stk_dataframe ([1 2; 3 4; 5 6]); assert (isequal (stk_get_sample_size (x), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/end.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/end.m ***** shared x x = stk_dataframe ([1; 2; 3]); ***** assert (isequal (double (x(2:end, :)), [2; 3])) ***** assert (isequal (double (x(2:end)), [2; 3])) ***** assert (isequal (double (x(2, 1:end)), 2)) ***** assert (isequal (double (x(end)), 3)) ***** shared x x = stk_dataframe ([1 2; 3 4; 5 6]); ***** assert (isequal (x(2:end, :), x(2:3, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:3, 2))) ***** error x(1:end, 1:end, 1:end) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/times.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/times.m ***** test stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@times, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/double.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/double.m ***** test u = rand(4, 3); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, u)) ***** test u = (rand(4, 3) < 0.5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mtimes.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/mtimes.m ***** shared x, y, z, w u = [1 3 4; 2 7 6]; % 2 x 3 v = [6 2; 1 7; 9 4]; % 3 x 2 w = [45 39; 73 77]; % u * v x = stk_dataframe (u, {}, {'a'; 'b'}); y = stk_dataframe (v, {'c' 'd'}); z = x * y; ***** assert (isa (z, 'stk_dataframe')); ***** assert (isequal (z.data, w)); ***** assert (isequal (z.rownames, x.rownames)); ***** assert (isequal (z.colnames, y.colnames)); ***** shared x, y x = stk_dataframe (rand (3, 2), {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 * x; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** test y = x * 3; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sind.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sind (x); assert (strcmp (class (v), class (u)) && isequal (v, sind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atand.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/atand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atand (x); assert (strcmp (class (v), class (u)) && isequal (v, atand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/bsxfun.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/bsxfun.m ***** shared x1, x2, data1, data2 x1 = rand (3, 2); data1 = stk_dataframe (x1); x2 = rand (3, 2); data2 = stk_dataframe (x2); ***** test z = bsxfun (@plus, data1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, x1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, data1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** shared x, y x = stk_dataframe (randn (2), {'x1', 'x2'}, {'a'; 'b'}); y = stk_dataframe (randn (2), {'y1', 'y2'}, {'c'; 'd'}); ***** test z = x + y; assert (isequal (z.colnames, x.colnames)); assert (isequal (z.rownames, x.rownames)); ***** test z = y + x; assert (isequal (z.colnames, y.colnames)); assert (isequal (z.rownames, y.rownames)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isnan.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/isnan.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isnan (x); assert (islogical (v) && isequal (v, isnan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_boundingbox.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_dataframe ([0 3 2; 1 4 1; 7 0 2], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** assert (isequal (y, stk_hrect ([0 0 1; 7 4 2], cn))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/transpose.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/transpose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data.'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u.')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_length.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/stk_length.m ***** test x = stk_dataframe ([1 2; 3 4; 5 6]); assert (isequal (stk_length (x), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/expm1.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/expm1.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = expm1 (x); assert (strcmp (class (v), class (u)) && isequal (v, expm1 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sum.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sum.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (sum(df1), sum(x1))) ***** assert (isequal (sum(df1, 1), sum(x1))) ***** assert (isequal (sum(df1, 2), sum(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sort.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/sort.m ***** shared x, y x = stk_dataframe ([3; 2; 1], {}, {'a', 'b', 'c'}); y = sort (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.data, [1; 2; 3])) ***** assert (isequal (y.rownames, {'c'; 'b'; 'a'})) ***** error y = sort (x, []); ***** assert (isequal (sort (x, 1), y)) ***** assert (isequal (sort (x, 2), x)) ***** error sort (x, 3) ***** error y = sort (x, [], 'ascend'); ***** assert (isequal (sort (x, 1, 'ascend'), y)) ***** assert (isequal (sort (x, 2, 'ascend'), x)) ***** error y = sort (x, 3, 'ascend'); ***** error y = sort (x, [], 'descend'); ***** assert (isequal (sort (x, 1, 'descend'), x)) ***** assert (isequal (sort (x, 2, 'descend'), x)) ***** error sort (x, 3, 'descend') 15 tests, 15 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atan.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/atan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atan (x); assert (strcmp (class (v), class (u)) && isequal (v, atan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/prod.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/prod.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (prod(df1), prod(x1))) ***** assert (isequal (prod(df1, 1), prod(x1))) ***** assert (isequal (prod(df1, 2), prod(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log1p.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/log1p.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log1p (x); assert (strcmp (class (v), class (u)) && isequal (v, log1p (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cos.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/cos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cos (x); assert (strcmp (class (v), class (u)) && isequal (v, cos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/median.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/arrays/@stk_dataframe/median.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (median(df1), median(x1))) ***** assert (isequal (median(df1, 1), median(x1))) ***** assert (isequal (median(df1, 2), median(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_estim.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_estim.m ***** shared f, xi, zi, NI, param0, param1, model f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x)) ); DIM = 1; NI = 20; box = [-1.0; 1.0]; xi = stk_sampling_regulargrid (NI, DIM, box); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter param0 = log ([SIGMA2; NU; 1/RHO1]); model = stk_model (@stk_materncov_iso); ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); assert (isequal (size (param1), size (param0))) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 4 column 9 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 ***** test % same thing, with empty lnv0 (ok) param2 = stk_param_estim (model, xi, zi, param0, []); assert (stk_isequal_tolrel (param2, param1, 1e-2)) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 3 column 9 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 ***** error % same thing, with lnv0 == NaN (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, nan); ***** error % same thing, with lnv0 == -inf (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, -inf); ***** test % same thing, with explicit value for 'criterion' param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); assert (stk_isequal_tolrel (param1, param2, 1e-2)) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 3 column 9 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); % We cannot assume a DETERMINISTIC optimization algorithm % (for some reason, Octave's sqp is not exactly deterministic) assert (stk_isequal_tolrel (param1, param2, 1e-2)) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 4 column 9 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 5 column 9 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 ***** test % noisy NOISE_STD_TRUE = 0.1; NOISE_STD_INIT = 1e-5; zi = zi + NOISE_STD_TRUE * randn(NI, 1); model.lognoisevariance = 2 * log(NOISE_STD_INIT); [param, lnv] = stk_param_estim ... (model, xi, zi, param0, model.lognoisevariance); ***** error param = stk_param_estim () ***** error param = stk_param_estim (model); ***** error param = stk_param_estim (model, xi); ***** test % Constant response model = stk_model (@stk_materncov52_iso); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); param = stk_param_estim (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); warning: Constant-response data: the output of stk_param_estim is likely to be unreliable. warning: called from stk_param_estim at line 95 column 5 __test__ at line 5 column 8 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 warning: Parameter estimation is impossible with constant-response data. warning: called from stk_param_init>paraminit_ at line 351 column 5 stk_param_init>stk_param_init_ at line 323 column 14 stk_param_init at line 87 column 18 stk_param_estim>provide_starting_point at line 205 column 20 stk_param_estim at line 110 column 30 __test__ at line 5 column 8 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1286 column 31 11 tests, 11 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_gls.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_gls.m ***** shared xi, zi, model, beta, sigma2 xi = (1:10)'; zi = sin (xi); model = stk_model (@stk_materncov52_iso); model.param = [0.0 0.0]; ***** test model.lm = stk_lm_constant (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, 0.1346064, 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4295288, 1e-6)) ***** test model.lm = stk_lm_affine (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, [0.4728342; -0.0614960], 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4559431, 1e-6)) ***** test model.lm = stk_lm_null (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (isequal (beta, zeros (0, 1))) ***** assert (stk_isequal_tolabs (sigma2, 0.3977993, 1e-6)) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_relik.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_relik.m ***** shared f, xi, zi, NI, model, C, dC1, dC2 f = @(x)(- (0.8 * x(:, 1) + sin (5 * x(:, 2) + 1) ... + 0.1 * sin (10 * x(:, 3)))); DIM = 3; NI = 20; box = repmat ([-1.0; 1.0], 1, DIM); xi = stk_sampling_halton_rr2 (NI, DIM, box); zi = stk_feval (f, xi); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter model = stk_model (@stk_materncov_aniso); model.param = log ([SIGMA2; NU; 1/RHO1 * ones(DIM, 1)]); ***** error [C, dC1, dC2] = stk_param_relik (); ***** error [C, dC1, dC2] = stk_param_relik (model); ***** error [C, dC1, dC2] = stk_param_relik (model, xi); ***** test [C, dC1, dC2] = stk_param_relik (model, xi, zi); ***** test TOL_REL = 0.01; assert (stk_isequal_tolrel (C, 21.6, TOL_REL)); assert (stk_isequal_tolrel (dC1, [4.387 -0.1803 0.7917 0.1392 2.580]', TOL_REL)); assert (isequal (dC2, [])); ***** shared xi, zi, model, TOL_REL xi = [-1 -.6 -.2 .2 .6 1]'; zi = [-0.11 1.30 0.23 -1.14 0.36 -0.37]'; model = stk_model (@stk_materncov_iso); model.param = log ([1.0 4.0 2.5]); model.lognoisevariance = log (0.01); TOL_REL = 0.01; ***** test % Another simple 1D check [C, dC1, dC2] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (C, 6.327, TOL_REL)); assert (stk_isequal_tolrel (dC1, [0.268 0.0149 -0.636]', TOL_REL)); assert (stk_isequal_tolrel (dC2, -1.581e-04, TOL_REL)); ***** test % Same 1D test with simple kriging model.lm = stk_lm_null; [C, dC1, dC2] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (C, 7.475, TOL_REL)); assert (stk_isequal_tolrel (dC1, [0.765 0.0238 -1.019]', TOL_REL)); assert (stk_isequal_tolrel (dC2, 3.0517e-03, TOL_REL)); ***** test % Check the gradient on a 2D test case f = @stk_testfun_braninhoo; DIM = 2; BOX = [[-5; 10], [0; 15]]; NI = 20; TOL_REL = 1e-2; DELTA = 1e-6; model = stk_model (@stk_materncov52_iso, DIM); model.param = [1 1]; xi = stk_sampling_halton_rr2 (NI, DIM, BOX); zi = stk_feval (f, xi); for range = [0.3 2 10] model.param(2) = - log (range); for diff = 1:2 assert (stk_test_critgrad ... (@stk_param_relik, model, xi, zi, diff, 1e-6)); end end 8 tests, 8 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_init.m ***** test xi = (1:10)'; zi = sin (xi); model = stk_model (@stk_materncov52_iso); model.param = stk_param_init (model, xi, zi, [1; 10], false); xt = (1:9)' + 0.5; zt = sin (xt); zp = stk_predict (model, xi, zi, xt); assert (sum ((zt - zp.mean) .^ 2) < 1e-3); ***** test % check equivariance of parameter estimates f = @(x) sin (x); xi = stk_sampling_regulargrid (10, 1); zi = stk_feval (f, xi); shift = 1000; scale = 0.01; model = stk_model (@stk_materncov32_iso); p1 = stk_param_init (model, xi, zi); p2 = stk_param_init (model, xi, shift + scale .* zi); assert (stk_isequal_tolabs (p2(1), p1(1) + log (scale^2), 1e-10)) assert (stk_isequal_tolabs (p2(2), p1(2), eps)) ***** shared xi, zi, BOX, xt, zt f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); DIM = 1; % Dimension of the factor space BOX = [-1.0; 1.0]; % Factor space xi = stk_sampling_regulargrid (20, DIM, BOX); % Evaluation points zi = stk_feval (f, xi); % Evaluation results NT = 400; % Number of points in the grid xt = stk_sampling_regulargrid (NT, DIM, BOX); % Generate a regular grid zt = stk_feval (f, xt); % Values of f on the grid ***** xtest % This test is known to fail in Debian buster i386 % because of a known problem in Octave's sqp/qp functions % http://savannah.gnu.org/bugs/?38875 model = stk_model (@stk_materncov_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: sqp: QP subproblem is non-convex and unbounded warning: called from sqp at line 436 column 9 stk_minimize_boxconstrained at line 57 column 18 stk_param_estim_optim at line 70 column 23 stk_param_estim at line 139 column 15 __test__ at line 5 column 14 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1310 column 31 ***** test model = stk_model (@stk_materncov32_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov32_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov52_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_materncov52_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model (@stk_gausscov_iso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 1.21281e-17 warning: called from linsolve at line 113 column 7 linsolve at line 42 column 3 stk_set_righthandside at line 44 column 16 stk_make_kreq at line 35 column 6 stk_predict_ at line 112 column 10 stk_predict at line 104 column 16 __test__ at line 6 column 5 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1310 column 31 ***** test model = stk_model (@stk_gausscov_aniso); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 3.93346e-18 warning: called from linsolve at line 113 column 7 linsolve at line 42 column 3 stk_set_righthandside at line 44 column 16 stk_make_kreq at line 35 column 6 stk_predict_ at line 112 column 10 stk_predict at line 104 column 16 __test__ at line 6 column 5 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1310 column 31 ***** test % Homoscedastic case / do_estim_lnv = true model = stk_model (@stk_materncov32_iso); [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, true); [model.param, model.lognoisevariance] = ... stk_param_estim (model, xi, zi); zp = stk_predict (model, xi, zi, xt); assert (model.lognoisevariance > -inf); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: This way of setting do_estim_lnv is deprecated warning: called from stk_param_init>stk_param_init_ at line 250 column 5 stk_param_init at line 87 column 18 __test__ at line 4 column 40 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1310 column 31 ***** error % Homoscedastic case / do_estim_lnv = false / model.lnv = nan model = stk_model (@stk_materncov32_iso); model.lognoisevariance = nan; % not compatible with do_estim_lnv == false [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, false); ***** test % Heteroscedastic case / known noise variance model = stk_model (@stk_materncov32_iso); lnv = log ((100 + rand (size (zi))) / 1e6); model.lognoisevariance = lnv; % here we say that lnv is known [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (isequal (model.lognoisevariance, lnv)); % should be untouched assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** shared model, x, z model = stk_model (@stk_materncov52_iso); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); ***** test % Constant response, noiseless model [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isequal (lnv, -inf)); warning: Parameter estimation is impossible with constant-response data. warning: called from stk_param_init>paraminit_ at line 351 column 5 stk_param_init>stk_param_init_ at line 323 column 14 stk_param_init at line 87 column 18 __test__ at line 3 column 15 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1310 column 31 ***** test % Constant response, noisy model model.lognoisevariance = nan; [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isscalar (lnv) && isfinite (lnv)); warning: Parameter estimation is impossible with constant-response data. warning: called from stk_param_init>paraminit_ at line 351 column 5 stk_param_init>stk_param_init_ at line 323 column 14 stk_param_init at line 87 column 18 __test__ at line 4 column 15 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1310 column 31 15 tests, 15 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init_lnv.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/param/estim/stk_param_init_lnv.m ***** test f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); ni = 20; xi = (linspace (-1, 1, ni))' + 0.2 * (randn (ni, 1)); zi = stk_feval (f, xi); model = stk_model (@stk_materncov_iso); model.param = log ([1; 5/2; 1/0.4]); model.lognoisevariance = nan; lnv = stk_param_init_lnv (model, xi, zi); assert ((isscalar (lnv)) && (lnv > -30) && (lnv < 30)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/model/prior_struct/stk_ortho_func.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/prior_struct/stk_ortho_func.m ***** shared model, x, n, d n = 15; d = 4; model = stk_model (@stk_materncov_aniso, d); x = stk_sampling_randunif (n, d); model = rmfield (model, 'lm'); % Test the old .order approach ***** error P = stk_ortho_func (); ***** error P = stk_ortho_func (model); ***** test P = stk_ortho_func (model, x); ***** test model.order = -1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 0])); ***** test model.order = 0; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1])); ***** test model.order = 1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, d + 1])); ***** test model.order = 2; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); ***** test model.order = 3; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])); ***** error model.order = 4; P = stk_ortho_func (model, x); % model.order > 3 is not allowed 9 tests, 9 passed, 0 known failure, 0 skipped [inst/model/prior_struct/stk_model.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/prior_struct/stk_model.m ***** test model = stk_model (); ***** test model = stk_model (@stk_expcov_iso); ***** test model = stk_model (@stk_expcov_iso, 1); ***** test model = stk_model (@stk_expcov_iso, 3); ***** test model = stk_model (@stk_expcov_aniso); ***** test model = stk_model (@stk_expcov_aniso, 1); ***** test model = stk_model (@stk_expcov_aniso, 3); ***** test model = stk_model (@stk_materncov_iso); ***** test model = stk_model (@stk_materncov_iso, 1); ***** test model = stk_model (@stk_materncov_iso, 3); ***** test model = stk_model (@stk_materncov_aniso); ***** test model = stk_model (@stk_materncov_aniso, 1); ***** test model = stk_model (@stk_materncov_aniso, 3); ***** test model = stk_model (@stk_materncov32_iso); ***** test model = stk_model (@stk_materncov32_iso, 1); ***** test model = stk_model (@stk_materncov32_iso, 3); ***** test model = stk_model (@stk_materncov32_aniso); ***** test model = stk_model (@stk_materncov32_aniso, 1); ***** test model = stk_model (@stk_materncov32_aniso, 3); ***** test model = stk_model (@stk_materncov52_iso); ***** test model = stk_model (@stk_materncov52_iso, 1); ***** test model = stk_model (@stk_materncov52_iso, 3); ***** test model = stk_model (@stk_materncov52_aniso); ***** test model = stk_model (@stk_materncov52_aniso, 1); ***** test model = stk_model (@stk_materncov52_aniso, 3); ***** test model = stk_model (@stk_gausscov_iso); ***** test model = stk_model (@stk_gausscov_iso, 1); ***** test model = stk_model (@stk_gausscov_iso, 3); ***** test model = stk_model (@stk_gausscov_aniso); ***** test model = stk_model (@stk_gausscov_aniso, 1); ***** test model = stk_model (@stk_gausscov_aniso, 3); ***** test model = stk_model (@stk_sphcov_iso); ***** test model = stk_model (@stk_sphcov_iso, 1); ***** test model = stk_model (@stk_sphcov_iso, 3); ***** test model = stk_model (@stk_sphcov_aniso); ***** test model = stk_model (@stk_sphcov_aniso, 1); ***** test model = stk_model (@stk_sphcov_aniso, 3); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/model/prior_struct/stk_covmat_noise.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/prior_struct/stk_covmat_noise.m ***** shared model, model2, x1, x2, n1, n2, d, Ka, Kb, Kc, Pa, Pb, Pc, P1, P2, P3, K1, K2, K3 n1 = 20; n2 = 10; d = 4; model = stk_model (@stk_materncov52_aniso, d); model.lm = stk_lm_affine; model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); model2 = model; model2.lognoisevariance = log(0.01); x1 = stk_sampling_randunif (n1, d); x2 = stk_sampling_randunif (n2, d); ***** error [KK, PP] = stk_covmat_noise (); ***** error [KK, PP] = stk_covmat_noise (model); ***** test [Ka, Pa] = stk_covmat_noise (model, x1); % (1) ***** test [K1, P1] = stk_covmat_noise (model, x1, []); ***** test [K2, P2] = stk_covmat_noise (model, x1, [], -1); ***** test [K3, P3] = stk_covmat_noise (model, x1, [], -1, false); ***** assert (isequal (size (Ka), [n1 n1])); ***** assert (isequal (size (Pa), [n1 0])); ***** assert (isequal (P1, Pa) && (isequal (K1, Ka))) ***** assert (isequal (P2, Pa) && (isequal (K2, Ka))) ***** assert (isequal (P3, Pa) && (isequal (K3, Ka))) ***** test [Kb, Pb] = stk_covmat_noise (model, x1, x1); % (2) ***** test [K1, P1] = stk_covmat_noise (model, x1, x1, -1); ***** test [K2, P2] = stk_covmat_noise (model, x1, x1, -1, false); ***** assert (isequal (size (Kb), [n1 n1])); ***** assert (isequal (size (Pb), [n1 0])); ***** assert (isequal (P1, Pb) && (isequal (K1, Kb))) ***** assert (isequal (P2, Pb) && (isequal (K2, Kb))) ***** test [Kc, Pc] = stk_covmat_noise (model, x1, x2); % (3) ***** test [K1, P1] = stk_covmat_noise (model, x1, x2, -1); ***** test [K2, P2] = stk_covmat_noise (model, x1, x2, -1, false); ***** assert (isequal (size (Kc), [n1 n2])); ***** assert (isequal (size (Pc), [n1 0])); ***** assert (isequal (P1, Pc) && (isequal (K1, Kc))) ***** assert (isequal (P2, Pc) && (isequal (K2, Kc))) ***** assert (isequal (Kb, Ka)); ***** test [Ka, Pa] = stk_covmat_noise (model2, x1); % (1') ***** test [Kb, Pb] = stk_covmat_noise (model2, x1, x1); % (2') ***** error assert (isequal (Kb, Ka)); ***** assert (isequal (Pa, Pb)); ***** assert (isequal (Pa, Pc)); 31 tests, 31 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_model_gpposterior.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_model_gpposterior.m ***** test stk_test_class ('stk_model_gpposterior') ***** shared M_prior, x_obs, z_obs x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); ***** test M_post = stk_model_gpposterior (); ***** test M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs]); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs], 3.441); ***** test % hidden feature kreq = stk_kreq_qr (M_prior, x_obs); M_post = stk_model_gpposterior (M_prior, {x_obs, kreq}, z_obs); ***** test % NaNs in prior_model.param DIM = 1; M = stk_model (@stk_materncov52_aniso, DIM); M.param = nan (2, 1); % this is currently the default x = stk_sampling_regulargrid (20, DIM, [0; 1]); y = sin (double (x)); zp = stk_predict (M, x, y, x); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_predict_leaveoneout.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_predict_leaveoneout.m ***** test % Check virtual Leave-One-Out formula n = 20; d = 1; x_obs = stk_sampling_regulargrid (n, d, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); lm_list = {stk_lm_null, stk_lm_constant, stk_lm_affine}; for j = 0:2 for k = 1:(length (lm_list)) model = stk_model (@stk_materncov32_iso, d); model.lm = lm_list{k}; model.param = log ([1; 5]); switch j % test various scenarios for lognoisevariance case 0 model.lognoisevariance = -inf; case 1 model.lognoisevariance = 0; case 2 model.lognoisevariance = (1 + rand (n, 1)) * 1e-3; end M_post = stk_model_gpposterior (model, x_obs, z_obs); [loo_pred, loo_res] = stk_predict_leaveoneout (M_post); [direct_pred, direct_res] = stk_predict_leaveoneout_direct (M_post); assert (stk_isequal_tolrel (loo_pred, direct_pred)); assert (stk_isequal_tolrel (loo_res, direct_res)); end end 1 test, 1 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_model_update.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_model_update.m ***** shared x_obs, z_obs, ref, M_prior, x_new, z_new, lnv_new [x_obs, z_obs, ref] = stk_dataset_twobumps ('noisy2'); M_prior = stk_model (@stk_materncov52_iso); M_prior.param = [-0.15; 0.38]; M_prior.lognoisevariance = 2 * log (ref.noise_std); x_new = [-0.79; -0.79]; z_new = [-0.69; -0.85]; lnv_new = ref.noise_std_func (x_new); ***** test % heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); ***** error % using lnv_new / homoscedastic M_prior.lognoisevariance = 0; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK ***** error % using lnv_new / noiseless M_prior.lognoisevariance = -inf; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs) M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK ***** error % not using lnv_new / heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/get.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/get.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/set.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/set.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/model/@stk_model_gpposterior/stk_predict_.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/@stk_model_gpposterior/stk_predict_.m ***** shared n, m, M_post, M_prior, x0, x_obs, z_obs, x_prd, y_prd, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = (linspace (0, pi, n + m))'; idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (x_obs); x_prd = x0(idx_prd); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error y_prd = stk_predict (M_post); ***** test y_prd = stk_predict (M_post, x_prd); ***** error y_prd = stk_predict (M_post, [x_prd x_prd]); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % nargout = 2, compute only variances M_post1 = stk_model_gpposterior (M_prior, x_obs, []); [y_prd_nan, lambda] = stk_predict (M_post1, x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd_nan.mean))); ***** test % discrete model (prediction indices provided) M_prior1 = stk_model (@stk_discretecov, M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, idx_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); ***** test % discrete model (prediction indices *not* provided) M_prior1 = stk_model (@stk_discretecov, M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, []); % predict them all! assert (stk_isequal_tolrel (y_prd, y_prd1(idx_prd, :))); 9 tests, 9 passed, 0 known failure, 0 skipped [inst/model/noise/@stk_gaussiannoise_het0/set.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/model/noise/@stk_gaussiannoise_het0/set.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model (@stk_materncov32_iso); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_hartman4.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_hartman4.m ***** test x = [0.1873 0.1906 0.5566 0.2647 ; 0.18744768 0.19414868 0.558005333 0.26476409]; y = stk_testfun_hartman4 (x); assert (stk_isequal_tolabs (y, ... [-3.729722308557300; -3.729840440436292], 1e-15)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_goldsteinprice.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_goldsteinprice.m ***** test % Use with nargin == 0 for visualisation stk_testfun_goldsteinprice (); close all; ***** assert (stk_isequal_tolabs ... (stk_testfun_goldsteinprice ([0, -1]), 3.0, 1e-12)) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_hartman3.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_hartman3.m ***** test x1 = [0.1, 0.55592003, 0.85218259]; y1 = -3.862634748621772; x2 = [0.114614 0.554649 0.852547]; y2 = -3.862747199255087; y = stk_testfun_hartman3 ([x1; x2]); assert (stk_isequal_tolabs (y, [y1; y2], 1e-15)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testcase_truss3.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testcase_truss3.m ***** shared tc, xd, n tc = stk_testcase_truss3 (); n = 5; xd = stk_sampling_randunif (n, [], tc.search_domain); ***** test v = stk_testfun_truss3_vol (xd, tc.constants); z = stk_testfun_truss3_bb (xd, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); ***** test F = stk_dataframe (zeros (n, 2), {'F1' 'F2'}); F(:, 1) = tc.constants.F1_mean + tc.constants.F1_std * randn (n, 1); F(:, 2) = tc.constants.F2_mean + tc.constants.F2_std * randn (n, 1); x = [xd F]; v = stk_testfun_truss3_vol (x, tc.constants); z = stk_testfun_truss3_bb (x, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_hartman6.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/test_functions/stk_testfun_hartman6.m ***** test x1 = [0.20169 0.150011 0.476874 0.275332 0.311652 0.657300]; y1 = -3.322368011391339; x2 = [0.20168952 0.15001069 0.47687398 0.27533243 0.31165162 0.65730054]; y2 = -3.322368011415512; y = stk_testfun_hartman6 ([x1; x2]); assert (stk_isequal_tolabs (y, [y1; y2], 1e-15)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc05.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc05.m ***** test stk_example_misc05; close all; assert (isa (model.lognoisevariance, 'stk_gaussiannoise_het0')); #==========================# # stk_example_misc05 # #==========================# 'stk_example_misc05' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc05.m STK_EXAMPLE_MISC05 Parameter estimation for heteroscedastic noise variance DESCRIPTION We consider a 1d prediction problem with noisy data, where the variance of the noise depends on the input location. A simple heteroscedastic model is used, where the only parameter to be estimated is a dispersion parameter (the square of a scale parameter). More preciesely, the variance of the noise is assumed to be of the form tau^2(x) = phi * (x + 1) ^ 2, and the dispersion parameter phi is estimated together with the parameters of the covariance function. EXPERIMENTAL FEATURE WARNING This script demonstrates an experimental feature of STK (namely, gaussian noise model objects). STK users that wish to experiment with it are welcome to do so, but should be aware that API-breaking changes are likely to happen in future releases. We invite them to direct any questions, remarks or comments about this experimental feature to the STK mailing list. See also: stk_example_kb09 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = 0.066833 0.707310 lognoisevariance = gn = | | Heteroscedastic variance model: tau^2(x) = dispersion * variance_function(x) | | dispersion: 2.4169 [log_dispersion = 0.8825] | variance_function: @(x) (x + 1) .^ 2 | 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc03.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc03.m ***** test stk_example_misc03; close all; #==========================# # stk_example_misc03 # #==========================# 'stk_example_misc03' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc03.m STK_EXAMPLE_MISC03 How to deal with (known) seasonality Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = 0.8839 -1.5254 lognoisevariance = -4.8524 model2 = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = @(t) [ones(length (t), 1), sin(2 * pi * t / T0), cos(2 * pi * t / T0)] dim = 1 param = -9.8265 -8.1781 lognoisevariance = -4.8253 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc04.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc04.m ***** test stk_example_misc04; close all; #==========================# # stk_example_misc04 # #==========================# 'stk_example_misc04' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc04.m STK_EXAMPLE_MISC04 Pareto front simulation DESCRIPTION We consider a bi-objective optimization problem, where the objective functions are modeled as a pair of independent stationary Gaussian processes with a Matern 5/2 anisotropic covariance function. Figure (a): represent unconditional realizations of the Pareto front and and estimate of the probability of being non-dominated at each point of the objective space. Figure (b): represent conditional realizations of the Pareto front and and estimate of the posteriorior probability of being non-dominated at each point of the objective space. EXPERIMENTAL FUNCTION WARNING This script uses the stk_plot_probdom2d function, which is currently considered an experimental function. Read the help for more information. REFERENCE [1] Michael Binois, David Ginsbourger and Olivier Roustant, Quantifying uncertainty on Pareto fronts with Gaussian Process conditional simu- lations, European J. of Operational Research, 2043(2):386-394, 2015. See also: stk_plot_probdom2d Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign multiplot> set style increment default; ^ line 0: warning: deprecated command Proba. of being dominated simulated Pareto fronts--| || | + =& * $&* %$=% *+ | 1000 +---+-+---+--+-+---+ ++||00% | + =& * $&* %$=% *+ | ||#|##|###|##|##|##| || #|###===*=$&*=%$=%========| +|#+##+###+##+##+##+ || 500 +|+###&#*#$&*#%$=%##*##+-+| |#################| || #|####&#*#$&*#%$=%##******| |#################| || #|####&&*#$&*#%$=%%%%%%%%%| 500 +---+##########+---+ ++||5% #|#####&*&$&*&%%=&&&&&&&&&| |#################| || #|######*#$&*#*%%%%%%%%%%%| |#################| || #|######*#$&***$##########| |#################| || 0 +|+#####*#$&*#*$=$$$$second objective|#################| ++||0% #|######**$&&&*$=&&&&&&&&&| +---+##########+---+ || #|##########***$=*********| |#################| || #|############*$==========| |#################| || #|############*$$$$$$$$$$$| -500 |#################| || #|############************| +---+##########+---+ ++||5% -500 +|+####################+-+| |#################| || #|###################### | |#################| || #|###################### | +|#+##+###+##+##+##+ || #|------------------------| -1000 |+-|--|---|--|--|--| || ###+####+###+####+###+## -+---+-100001002+---+0++-0% -2000-1000 0 10002000 first objective first objective 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc02.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc02.m ***** test stk_example_misc02; close all; #==========================# # stk_example_misc02 # #==========================# 'stk_example_misc02' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc02.m STK_EXAMPLE_MISC02 How to use priors on the covariance parameters A Matern covariance in dimension one is considered as an example. A Gaussian prior is used for all three parameters: log-variance, log-regularity and log- inverse-range. The corresponding parameter estimates are Maximum A Posteriori (MAP) estimates or, more precisely, Restricted MAP (ReMAP) estimates. Several values for the variance of the prior are successively considered, to illustrate the effect of this prior variance on the parameter estimates. When the variance is small, the MAP estimate is close to the mode of the prior. On the other hand, when the variance is large, the prior becomes "flat" and the MAP estimate is close to the ReML estimate (see figure b). Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign | prior std = 10.00 | prior std = 1.00 3 +|+ 4 +|+ #### %|%## ####%%%% 3 +|+# ##%%%%% 2 +|+&&&%&&&%######%&&&&&&&& 2 +|+&&%##%%%######%%&&&&&&& 1 +|+#==GG==&&%###&&&######& 1 +|+#&&GG==&&%###&&&&#####& =|===&&&&====G=G=====predicted outpu| z===&&====G=G========== 0 +|+&&&##%&&&&&&&&&&######& 0 +|+&&&##%&&&&&&&&&&######& -1 +|+%#############%&&&&&&&& -1 +|+%#############%&&&&&&&& +|------------------------- -2 +|------------------------- -2 +-+##+####+####+####+### + -3 +-+##+####+####+####+####+ 0 0.2 0.4 0.6 0.8 1 0 0.2 0.4 0.6 0.8 1 | prior std = 0.20 | prior std = 0.01 6 +|+ 6 +|+ | ### | # 4 +|+#################%%%%%% 4 +|+##################%%%%% 2 +|+%####&&%######%&&&&&&&& 2 +|+#####%%########&&&&&&&& &|&&==GG=====&&======predicted outpu| z&=GG=====#%=========== 0 +|+==&###%&&=G=G&&&&#####& 0 +|+===####%&=G=G&&&&&&###& -2 +|+&%#############%&&&&&&& -2 +|+&###############%%&&&&& +|------------------------- +|------------------------- -4 +-+##+####+####+####+### + -4 +-+##+####+####+####+### + 0 0.2 0.4 0.6 0.8 1 0 0.2 0.4 0.6 0.8 1 input x input x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc01.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/03_miscellaneous/stk_example_misc01.m ***** test stk_example_misc01; close all; #==========================# # stk_example_misc01 # #==========================# 'stk_example_misc01' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/03_miscellaneous/stk_example_misc01.m STK_EXAMPLE_MISC01 Several correlation functions from the Matern family The Matern 1/2 correlation function is also known as the "exponential correla- tion function". This is the correlation function of an Ornstein-Ulhenbeck pro- cess. The Matern covariance function tends to the Gaussian correlation function when its regularity (smoothness) parameter tends to infinity. See also: stk_materncov_iso, stk_materncov_aniso Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe02.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe02.m ***** test stk_example_doe02; close all; #=========================# # stk_example_doe02 # #=========================# 'stk_example_doe02' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe02.m STK_EXAMPLE_DOE02 "Sequential Maximin" design In this example, a two-dimensional space-filling design is progressively enriched with new points using a "sequential maximin" approach. More precisely, the k-th point X(k, :) is selected to maximize the distance to the set of all previously selected points X(1, :), X(2, :), ..., X(k-1, :). NOTES: * The resulting design is NOT optimal with respect to the maximin criterion (separation distance). * This procedure is not truly a *sequential* design procedure, since the choice of the k-th point X(k, :) does NOT depend on the response at the previously selected locations X(i, :), i < k. REFERENCE [1] Emmanuel Vazquez and Julien Bect, "Sequential search based on kriging: convergence analysis of some algorithms", In: ISI - 58th World Statistics Congress of the International Statistical Institute (ISI'11), Dublin, Ireland, August 21-26, 2011. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign gnuplot> " font ":Bold,10" textcolor rgb " ^ line 0: invalid command |----------------------n = 10, fd = 3.98e-01-------------------------| 1 F|+ + + + + +-+| +| + + + + +| #|#######################################################F########### | #|#####################################F############################# | 0.8 +|+#################################################################+-+| #|#################F################################################# | #|################################################################### | 0.6 F|+################################################F################+-+| #|################################################################### | #|################################################################### | 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failed to convert degree sign gnuplot> " font ":Bold,10" textcolor rgb " ^ line 0: invalid command |----------------------n = 19, fd = 2.12e-01-------------------------| 1 F|+ + F + + + +-+| +| + + + + +| #|#######################################################F########### | #|#####################################F############################# | 0.8 +|+##F##############################################################+-F| #|#################F################################################# | #|################################################################### | 0.6 F|+################################################F################+-+| #|################################################################### F| #|################################################################### | #|################################F################################## | 0.4 +|+##################################################F##############+-+| #|#######F########################################################### | #|######################F############################################ F| 0.2 +|+#################################################################+-+| #|###########################################F####################### | #|##########F######################################################## | +|---------------------------------------------------------------------| 0 F-+###########+#############+#############+#############+#####F#####+-+ 0 0.2 0.4 0.6 0.8 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe04.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe04.m ***** test stk_example_doe04; close all; #=========================# # stk_example_doe04 # #=========================# 'stk_example_doe04' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe04.m STK_EXAMPLE_DOE04 Probability of misclassification The upper panel shows posterior means and variances as usual, and the threshold of interest, which is at T = 0.85 (dashed line). The lower panel shows the probability of misclassification as a function of x (blue curve), i.e., the probability that the actual value of the function is not on the same side of the threshold as the prediction (posterior mean). We also plot the expected future probability of misclassification (magenta curve), should a new evaluation be made at x = 3. Note that both probabilities are obtained using stk_pmisclass. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe03.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe03.m ***** test stk_example_doe03; close all; #=========================# # stk_example_doe03 # #=========================# 'stk_example_doe03' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe03.m STK_EXAMPLE_DOE03 A simple illustration of 1D Bayesian optimization Our goal here is to optimize (maximize) the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi]. A Matern 5/2 prior with known parameters is used. Evaluations points are chosen sequentially using the Expected Improvement (EI) criterion, starting from an initial design of N0 = 3 points. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. 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+|+*****G******G**&&%####%%%%%&***&&##########****###&&&&%# z #|&&&&&%########&*****G&&&****G*&%#############&=******#&&&% -5 +|+###############&&&&*****=&&##################%===##******G -10 +|+#####################%%%%######################%====&&==== +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.00014 +|+ + + + + + +-+| 0.00012 +|+ + + + F + + +-+| 0.0001 +|+################################**#####################+-+| 8e-05 +|+################################**#####################+-+| #|#################################*#*##################### | 6e-05 +|+################################*#*####################+-+| 4e-05 +|+################################*#*#############***####+-+| 2e-05 +|-----------------------------------------------------------| 0 ***********************************##**************###******* 0 2 4 6 8 10 12 x : x z x0(001) : 0.00000 0.00000 x0(002) : 6.00000 -1.67649 x0(003) : 12.00000 -6.43888 xg(057) : 1.68421 1.67339 xg(099) : 2.94737 0.56886 xg(282) : 8.45113 6.98861 xg(299) : 8.96241 3.99788 xg(268) : 8.03008 7.90589 xg(258) : 7.72932 7.66935 xg(265) : 7.93985 7.91060 xg(266) : 7.96992 7.91642 xg(145) : 4.33083 -4.01937 Number of evaluations: 3 + 9 = 12. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe06.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe06.m ***** test stk_example_doe06; close all; #=========================# # stk_example_doe06 # #=========================# 'stk_example_doe06' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe06.m STK_EXAMPLE_DOE06 Sequential design for the estimation of an excursion set In this example, we consider the problem of estimating the set Gamma = { x in X | f(x) > z_crit }, where z_crit is a given value, and/or its volume. In a typical "structural reliability analysis" problem, Gamma would represent the failure region of a certain system, and its volume would correspond to the probability of failure (assuming a uniform distribution for the input). A Matern 5/2 prior with known parameters is used for the function f, and the evaluations points are chosen sequentially using any of the sampling criterion described in [1] (see also [2], section 4.3). REFERENCE [1] B. Echard, N. Gayton and M. Lemaire (2011). AK-MCS: an active learning reliability method combining Kriging and Monte Carlo simulation. Structural Safety, 33(2), 145-154. [2] J. Bect, D. Ginsbourger, L. Li, V. Picheny and E. Vazquez (2012). Sequential design of computer experiments for the estimation of a probability of failure. Statistics and Computing, 22(3), 773-793. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. Volume (reference value): 20.17% data_init = <4x2 stk_dataframe array> : x z initial design #1 : 0.000000 0.00000 initial design #2 : 0.333333 -0.43063 initial design #3 : 0.666667 -0.66886 initial design #4 : 1.000000 -1.20558 line 0: warning: iconv failed to convert degree sign |-------------------------Groung truth----------------------------| 1 +|+ + + + + +-+| +| + + + + +| #|############################################################### | 0.5 +|+#############################################################+-+| #|############################################################### | #|############################################################### | $|$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$| 0 *|*****##***####***#######**#######**##########**########**#####+-+| #|####****########**#####**#########*##########*##########*###### | z #|#################***#***###########*########**##########**##### | -0.5 +|+##################***#############**######**############*####+-+| #|####################################**####**#############**#### | #|#####################################******###############**### | #|----------------------------+##############################**## | -1 +|***?***z = f(x), below zcrit|###############################*#+-+| #|###?###z = f(x), above zcrit|###############################*****| +|-----------------------------------------------------------------| -1.5 +-+##########+############+#############+############+##########+-+ 0 0.2 0.4 0.6 0.8 1 x Iteration #1 | Current sample size: n = 4 | Volume estimate (plugin): 0.00000 [ref: 0.20170] | Upper-bound on posterior std: 4.0952e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 4 +|+ ### | #%%%%%%%%%## ###%%%### ######## 2 +|+&&&&&&&&&&&&&&%#####%%&&&&&&&&&&&%#######%%&&&&&&&&%%### 0 +|+###F###################################################### z #|&&&&##########&***G*******************G*******************G -2 +|+%%&&&&&&&&&&&&%#####%&&&&&&&&&&&&&&%###%&&&&&&#####&&&&&& -4 +|+#####%%%%%##############%%%%%%%###########%%%&&&&&&&%%## +|------------------------------------------------------------ -6 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.4 +|+***F**** + + + + +-+| +|** **** + + + +| 0.3 +|*##########***##########################################+-+| #|#############**#########********######################### | criterion +|+#############**#######**######***######################+-+| #|###############*#####***#########**#########********##### | 0.1 +|+##############**####*############**######***######***##+-+| *|-----------------------------------------------------------| 0 *-+#########+#####*****#+###########+#******####+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #2 | Current sample size: n = 5 | Volume estimate (plugin): 0.00000 [ref: 0.20170] | Upper-bound on posterior std: 3.0162e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 4 +|+ | ######## ######## 2 +|+##########%%#########%&&&&&&&&&&&%#######%%&&&&&&&&%%### 0 +|+########################################################## z #|%%%##%&&&&&&&&&***G*********F*********G*******************G -2 +|+####################%&&&&&&&&&&&&&&####%&&&&&&#####&&&&&& -4 +|+#########################%%%%%%###########%%%&&&&&&&%%## +|------------------------------------------------------------ -6 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.25 +|+ + + **F* + + +-+| +| + + *** *** + + +| 0.2 +|+######################**######**#######################+-+| 0.15 +|+########*****########**#########*###########*****######+-+| #|########**###**#######*##########**########***###***##### | 0.1 +|**#####**#####*######**###########**######**#######**###+-+| 0.05 +|***####*######**#####*#############*#####**#########**##+-+| +|-----------------------------------------------------------| 0 **+#*****###+#####*****#+###########+#******####+########**** 0 0.2 0.4 0.6 0.8 1 x Iteration #3 | Current sample size: n = 6 | Volume estimate (plugin): 0.09990 [ref: 0.20170] | Upper-bound on posterior std: 2.8175e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 2 +|+ ####### 1 +|+ ###### #%%%# %%%%# ##%%%%%%%%%%# 0 +|+########################F################################# -1 +|+&&&&*************G***&&&&%###&===****G****########====&&&& z #|########%&&&&&&&%######################&&&****************G -2 +|+########################################%&&&&#######&&&&% -3 +|+##########################################%%&&&&&&&&&%%# -4 +|------------------------------------------------------------ -5 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + F * + + +-+| +| + + ** *** + + +| 0.4 +|+#######################***###*#*#######################+-+| 0.3 +|+######################**#*###*#**######################+-+| criterion #|######################**##*##**##*####################### | 0.2 +|+#####################*###**#*###**#####################+-+| 0.1 +|**###################**####*#*####*#####################+-+| +|-----------------------------------------------------------| 0 **+#******##+##*********+####***####+**********#+######****** 0 0.2 0.4 0.6 0.8 1 x Iteration #4 | Current sample size: n = 7 | Volume estimate (plugin): 0.11050 [ref: 0.20170] | Upper-bound on posterior std: 2.1165e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 2 +|+ ####### 1 +|+ #%%%%%%%%%%# 0 +|+#############################F############################ -1 +|+&&&&*************G**=&#######%==*****G*****#######====&&&& z #|########%&&&&&&&#######################&&&&***************G -2 +|+########################################%&&&&&######&&&&# -3 +|+###########################################%%&&&&&&&&%## -4 +|------------------------------------------------------------ -5 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + +* F + + +-+| +| + +* * + + +| 0.4 +|+######################*#####**#########################+-+| 0.3 +|+######################*#####***########################+-+| criterion #|#######################**####*#*######################### | 0.2 +|+#####################***####*#**#######################+-+| 0.1 +|**####################*#*####*##**######################+-+| +|-----------------------------------------------------------| 0 **+#*******#************+#******####***********#+######****** 0 0.2 0.4 0.6 0.8 1 x Iteration #5 | Current sample size: n = 8 | Volume estimate (plugin): 0.08680 [ref: 0.20170] | Upper-bound on posterior std: 1.9463e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%%&&&&&&%%### 0 +|+#######################F################################## z &|&&**G*************G****&######********G**************==&&&# -1 +|+#######&&&&&&&&%##################%%##%&&&&&#######******G -2 +|+#########################################%%&&&&&&&&&&&&&% -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + F * + + +-+| +| + + * * + + +| 0.4 +|+######################**####*##########################+-+| 0.3 +|+######################**####*##########################+-+| criterion #|#######################**####*########################### | 0.2 +|+######################**####*#################**#######+-+| 0.1 +|**#####################**####*##############*********###+-+| +|-----------------------------------------------------------| 0 **+#******##+#***********#*******************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #6 | Current sample size: n = 9 | Volume estimate (plugin): 0.08400 [ref: 0.20170] | Upper-bound on posterior std: 1.7704e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+###########################################%%&&&&&&%%### 0 +|+############################F############################# z &|&&**G*************G****#######********G**************==&&&# -1 +|+#######%&&&&&&%###################%%##%&&&&&#######******G -2 +|+#########################################%%&&&&&&&&&&&&&% -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + F + + +-+| +| + + * + + +| 0.4 +|+############################*##########################+-+| 0.3 +|+############################*##########################+-+| criterion #|########################*####*########################### | 0.2 +|+#######################*####*##########################+-+| 0.1 +|+#######################*####*##############*********###+-+| +|-----------------------------------------------------------| 0 **+#******##+#*******************************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #7 | Current sample size: n = 10 | Volume estimate (plugin): 0.08530 [ref: 0.20170] | Upper-bound on posterior std: 1.8486e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&%%### 0 +|+############################F############################# z &|&&**G*************G****#######********G***************=&&&# -1 +|+#######%&&&&&&%###################%%##%&&&&&########*****G -2 +|+##########################################%&&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + + +-+| +| + + F + + +| 0.4 +|+############################*##########################+-+| 0.3 +|+#######################*####*##########################+-+| criterion #|########################*####*########################### | 0.2 +|+#######################*####*################*****#####+-+| 0.1 +|+#######################*####*##############***###***###+-+| +|-----------------------------------------------------------| 0 **+#******##+#*******************************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #8 | Current sample size: n = 11 | Volume estimate (plugin): 0.08530 [ref: 0.20170] | Upper-bound on posterior std: 1.8680e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&%%### 0 +|+#######################F################################## z &|&&**G*************G****#######********G***************=&&&# -1 +|+#######%&&&&&&%###################%%##%&&&&&########*****G -2 +|+##########################################%&&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.35 +|+ + + + + +-+| 0.3 +|+ + + + + +-+| 0.25 +|+#######################F###############################+-+| 0.2 +|+#######################*###############################+-+| #|########################*####################******###### | 0.15 +|+#######################*###################**####***###+-+| 0.1 +|**######################*##################**#######**##+-+| 0.05 +|-----------------------------------------------------------| 0 **+#******##+##******************************###+#######***** 0 0.2 0.4 0.6 0.8 1 x Iteration #9 | Current sample size: n = 12 | Volume estimate (plugin): 0.08530 [ref: 0.20170] | Upper-bound on posterior std: 1.8726e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 3 +|+ 2 +|+ ######## 1 +|+##########################################%%&&&&&&&%%### 0 +|+########################################################## z &|&&**G*************G****#######********G*********F*****=&&&# -1 +|+#######%&&&&&&%###################%%##%&&&&&########*****G -2 +|+##########################################%&&&&&&&&&&&&&# -3 +|------------------------------------------------------------ -4 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.2 +|+ + + + + +-+| +| + + + **F** +| 0.15 +|+############################################**###**####+-+| #|############################################**#####**#### | 0.1 +|+##########################################**#######**##+-+| #|**#######**################################*#########*### | 0.05 +|***####******#############################**#########**#+-+| +|-----------------------------------------------------------| 0 **+#*****###+##*****************************####+########**** 0 0.2 0.4 0.6 0.8 1 x Iteration #10 | Current sample size: n = 13 | Volume estimate (plugin): 0.21000 [ref: 0.20170] | Upper-bound on posterior std: 2.1294e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1.5 +|+ 1 +|+ #### #|###########################################%&&&%&&&&&&%## 0.5 +|+&&###%&&&&&&%%#########*G**G*###########%==****G***#&&%# z 0 +|+###########################################F############## -0.5 +|+&&&&&************G***&########***&&&#%****&&%####%==***&& #|######%&&&####&&&&##############%*****G*&&&%########===***# -1 +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+###########+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + F + ** +-+| +| + + + * + ** +| 0.4 +|+##########################################***#####**###+-+| 0.3 +|+##########################################*#*#####***##+-+| criterion #|###########################################*#*####**#*### | 0.2 +|+##########################################*#*####*##*##+-+| 0.1 +|+#########################################**#**###*##**#+-+| +|-----------------------------------------------------------| 0 **+#******##+#*******************************###****####***** 0 0.2 0.4 0.6 0.8 1 x Iteration #11 | Current sample size: n = 14 | Volume estimate (plugin): 0.21330 [ref: 0.20170] | Upper-bound on posterior std: 1.5232e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ 0.5 +|+ #%%%%%# G***G%%%## #|##########################################F################ 0 +|+***G*****##=====%#&****#####*G**######%***######&****&&% z -0.5 +|+&&%#&&&#*********G**&#########&***&&%G**&########%==***&% -1 +|+######&&&&&&&&&&################&*****#############&==***& #|#########%%%%%%######################################%===*G -1.5 +|------------------------------------------------------------ -2 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + F + * +-+| +| + + + * + * +| 0.4 +|+#########################################*#######*#####+-+| 0.3 +|+#########################################*#######*#####+-+| criterion #|##########################################*######***##### | 0.2 +|+#########################################*######*#*####+-+| 0.1 +|+#########################################*######*#**###+-+| +|-----------------------------------------------------------| 0 **+#******##+#**************************************###****** 0 0.2 0.4 0.6 0.8 1 x Iteration #12 | Current sample size: n = 15 | Volume estimate (plugin): 0.20990 [ref: 0.20170] | Upper-bound on posterior std: 1.3461e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ 0.5 +|+ #%%%%%# G***G#### #|##################################################F######## 0 +|+***G*****##=====%#&****#####*G**#######***######&***&&&# z -0.5 +|+&&%#&&&#*********G**&#########&***&&%G**#########%==***&% -1 +|+######&&&&&&&&&&################&*****#############&==***& #|#########%%%%%%######################################%===*G -1.5 +|------------------------------------------------------------ -2 +-+#########+###########+###########+###########+########## + 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + * + F +-+| +| + + + * + * +| 0.4 +|+#########################################*#######*#####+-+| 0.3 +|+#########################################*######**#####+-+| criterion #|##########################################*######**###### | 0.2 +|+#########################################*######***####+-+| 0.1 +|+#########################################*######*#*####+-+| +|-----------------------------------------------------------| 0 **+#******##+#**************************************##******* 0 0.2 0.4 0.6 0.8 1 x Iteration #13 | Current sample size: n = 16 | Volume estimate (plugin): 0.20140 [ref: 0.20170] | Upper-bound on posterior std: 9.7673e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | ###### *** 0.5 +|+&%####%&&&&&%##########*G**G##############*G*&*G*####### 0 +|+################################################F######### z %|&&&*G********#====&****#######***&#####&**########***&### -0.5 +|+#####&&####******G=&###########***&&&G**##########&**&&% -1 +|+######%&&&&&&&&&################&*****#############&****& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + + F +-+| +| + + + + * +| 0.4 +|+#########################################*######*######+-+| 0.3 +|+#########################################*######*######+-+| criterion #|##########################################*######*####### | 0.2 +|+#########################################*######*######+-+| 0.1 +|+#########################################*######*######+-+| +|-----------------------------------------------------------| 0 **+#******##+#*********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #14 | Current sample size: n = 17 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 9.4135e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | ###### *** 0.5 +|+&%####%&&&&&%##########*G**G##############*G*&*G*####### 0 +|+#########################################F################ z %|&&&*G********#====&****#######***&#####&**########***#### -0.5 +|+#####&&&###******G=&###########***&&&G**##########&**&%# -1 +|+######%&&&&&&&&&################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.5 +|+ + + + + +-+| +| + + + + +| 0.4 +|+#########################################F#############+-+| 0.3 +|+#########################################*#############+-+| criterion #|##########################################*############## | 0.2 +|+#########################################*#############+-+| 0.1 +|+#########################################*#############+-+| +|-----------------------------------------------------------| 0 **+#******##+#*********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #15 | Current sample size: n = 18 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 9.3708e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | ###### *** 0.5 +|+&%####%&&&&&%##########*G**G##############*G*&*G*####### 0 +|+F######################################################### z %|&&&*G********#====&****#######***&#####&**########***#### -0.5 +|+#####&&&###******G=&###########***&&&G**##########&**&%# -1 +|+######%&&&&&&&&&################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.08 +|*F + + + + +-+| +|** ** + + + +| 0.06 +|***#####****############################################+-+| #|*#*#####*##**############################################ | 0.04 +|+#*####**###*###########################################+-+| #|##*####*####**########################################### | 0.02 +|+#*###**#####*##########################################+-+| +|-----------------------------------------------------------| 0 **+##****###+###********************************************* 0 0.2 0.4 0.6 0.8 1 x Iteration #16 | Current sample size: n = 19 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 3.5928e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+########%%%%###########*G**G##############*G*&*G*####### 0 +|+########################################################## z #|##&=G******###====&****#######***&#####&**########***#### -0.5 +|+#####&&&#F*******G=&###########***&&&G**##########&**&%# -1 +|+######%&&&&&&&&&################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.02 +|+ F* + + + +-+| +| *** + + + +| 0.015 +|+########*#**###########################################+-+| #|#########*##*############################################ | 0.01 +|+#######**##**###################################*######+-+| #|########*####*###################################*####### | 0.005 +|+#######*####*###################################*######+-+| +|-----------------------------------------------------------| 0 **********##+###********************************************* 0 0.2 0.4 0.6 0.8 1 x Iteration #17 | Current sample size: n = 20 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 1.2087e-01 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+#######%%#%%%##########*G**G##############*G*&*G*####### 0 +|+##########F############################################### z #|##&*G**&&###&&****&****#######***&#####&**########***#### -0.5 +|+#############%&&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.35 +|+ + + + + +-+| 0.3 +|+ + + + + +-+| 0.25 +|+########**F############################################+-+| 0.2 +|+########****###########################################+-+| #|#########****############################################ | 0.15 +|+#######*****###########################################+-+| 0.1 +|+#######*#*#**##########################################+-+| 0.05 +|-----------------------------------------------------------| 0 ***********#*##********************************************** 0 0.2 0.4 0.6 0.8 1 x Iteration #18 | Current sample size: n = 21 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 1.3454e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+#######################*G**G##############*G*&*G*####### 0 +|+################################################F######### z #|##&*G**&%####&****&****#######***&#####&**########***#### -0.5 +|+##############%&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############&***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.01 +|+ + + + + +-+| +| ** + + + F +| 0.008 +|+########**######################################*######+-+| 0.006 +|+########**######################################*######+-+| #|#########**######################################*####### | 0.004 +|+#######***######################################*######+-+| 0.002 +|+#######*#*######################################*######+-+| +|-----------------------------------------------------------| 0 ***********#************************************************* 0 0.2 0.4 0.6 0.8 1 x Iteration #19 | Current sample size: n = 22 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 1.3418e-02 [target: 5.000e-04] line 0: warning: iconv failed to convert degree sign | 1 +|+ | *** 0.5 +|+#######################*G**G##############*G*&*G*####### 0 +|+########F################################################# z #|##&*G**&%####&****&****#######***&#####&**########***#### -0.5 +|+##############%&*G*&###########***&&&G**##########&**&%# -1 +|+################################&*****#############%***&& +|------------------------------------------------------------ -1.5 +-+#########+###########+###########+###########+########%%%+ 0 0.2 0.4 0.6 0.8 1 |-----------------------------------------------------------| 0.01 +|+ + + + + +-+| +| F* + + + +| 0.008 +|+########**#############################################+-+| 0.006 +|+########**#############################################+-+| #|#########**############################################## | 0.004 +|+#######***#############################################+-+| 0.002 +|+#######*#*#############################################+-+| +|-----------------------------------------------------------| 0 ***********#************************************************* 0 0.2 0.4 0.6 0.8 1 x Iteration #20 | Current sample size: n = 23 | Volume estimate (plugin): 0.20170 [ref: 0.20170] | Upper-bound on posterior std: 4.6390e-04 [target: 5.000e-04] history = <23x5 stk_dataframe array> : x z vol_estim vol_err nmisclass initial design #1 : 0.000000 0.00000 NaN NaN NaN initial design #2 : 0.333333 -0.43063 NaN NaN NaN initial design #3 : 0.666667 -0.66886 NaN NaN NaN initial design #4 : 1.000000 -1.20558 0.0000 -0.2017 2017 MC point #01618 : 0.104164 -0.13302 0.0000 -0.2017 2017 MC point #06475 : 0.497574 0.26519 0.0999 -0.1018 1686 MC point #08435 : 0.446679 0.26120 0.1105 -0.0912 1416 MC point #08107 : 0.530495 0.00224 0.0868 -0.1149 1201 MC point #04214 : 0.426655 0.13178 0.0840 -0.1177 1177 MC point #02348 : 0.514014 0.15506 0.0853 -0.1164 1164 MC point #05077 : 0.514627 0.15005 0.0853 -0.1164 1164 MC point #09532 : 0.429044 0.14979 0.0853 -0.1164 1164 MC point #09931 : 0.826000 0.44594 0.2100 0.0083 619 MC point #09397 : 0.766249 0.44212 0.2133 0.0116 116 MC point #02745 : 0.735293 0.13373 0.2099 0.0082 82 MC point #06485 : 0.863365 0.02622 0.2014 -0.0003 3 MC point #00444 : 0.853921 0.15529 0.2017 0.0000 0 MC point #05532 : 0.736622 0.14966 0.2017 0.0000 0 MC point #03833 : 0.041996 0.00873 0.2017 0.0000 0 MC point #08556 : 0.205710 0.14334 0.2017 0.0000 0 MC point #00719 : 0.214672 0.13935 0.2017 0.0000 0 MC point #00313 : 0.854341 0.14982 0.2017 0.0000 0 MC point #07878 : 0.188680 0.11821 0.2017 0.0000 0 Final result: | Number of evaluations: 4 + 19 = 23. | Volume estimate (plugin): 20.1700% [ref: 20.1700%] 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe05.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe05.m ***** test stk_example_doe05; close all; #=========================# # stk_example_doe05 # #=========================# 'stk_example_doe05' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe05.m STK_EXAMPLE_DOE05 A simple illustration of 1D Bayesian optimization Our goal here is to minimize the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi], using noisy evaluations. Evaluations points are chosen sequentially using either AKG criterion (default) or the EQI criterion (set SAMPCRIT_NAME to 'EQI'); Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,11" textcolor rgb " ^ line 0: invalid command | n = 5 + 0 = 5. 15 +|+ 10 +|+ ##%%%%%%### ####%%%### ##%%%%%%## ####### #|%%&&&&&&&&&&&&&&&&&&&&&&%%#####%%&========&&&&&&&&%%##### 5 +|+&&####******G****#####&&&&&&&&====##******G***##&&&&&%## z 0 +|+*******=========***********G*********##&&&&==*****##&&&&%# -5 +|+&&&&&&&&&&%%%%&=============&&&###&&&&&&%%#%&===#*****#&&& #|%%%%%%%%%########%%%&&&&&&&%%%%&&&&&%%%########%===&###***G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+#########+ 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.1 +|+ + + + + + +-+| +| + + + + + *F* +| 0.08 +|+####################################################*#*+-+| 0.06 +|+###################################################*##**-+| AKG #|###################################################**###* | 0.04 +|+##################################################*####*-+| 0.02 +|+#################################################*#####*-+| +|-----------------------------------------------------------| 0 ***********************####********##***************######+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 5 = 10. 15 +|+ #### 10 +|+ ##%%%%%%### ######### ##%%%%%%%%# #|%%&&&&&&&&&&&&&&&&&&&&&%%%#####%&&========&&############# 5 +|+&&####******G****#####&&&&&&&&====********G=&%########## z 0 +|+*******=========***********G******####&&&&***=&%######## -5 +|+&&&&&&&&&&%%%%&=============&&&&&&&&&&&%%%&&&***&&######%& #|%%%%%%%%%########%%&&&&&&&&%%%%%%%%%%########%&&****&&&&**G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.12 +|+ + + + + +*F +-+| 0.1 +|+ + + + + **** **+| #|###############################################**##*###*#* | 0.08 +|+##############################################*###*###*+-*| AKG0.06 +|+#############################################**####*#*#+-+| 0.04 +|+############################################**#####*#*#+-+| #|#############################################*######***## | 0.02 +|-----------------------------------------------------------| 0 ***********************************************###+####*##+-+ 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 10 = 15. 20 +|+ 15 +|+ ###### #### ####### 10 +|+#%%%&&&&&%%###%%%%%%%%%########%%&&&&&&&&%############## 5 +|+&&&&&###&&&&&&&&&&&&&&&&&%###%&&==========&&############ z &|&==**********G*******####&&&&&==***********G*=&%######### 0 +|+***#####&&&&========*******G****####&&&&&&&&***&%####### # -5 +|+&&&&&&&&&%####%%&&&======&&&&&&&&&&&&%%####%&&***G&&&&&G*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.08 +|+ + + + + + +-+| 0.07 +|+ + + + + + +-+| 0.06 +|+#################################################**###*F-+| 0.05 +|+################################################***###**-+| AKG0.04 +|+################################################*##*#*#+*+| 0.03 +|+###############################################**##*#*#+*+| 0.02 +|+###############################################*###**##+*+| 0.01 +|-----------------------------------------------------------| 0 *******#**************####***********************#+#######+-+ 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 15 = 20. 20 +|+ 15 +|+ ###### #### ####### 10 +|+#%%%&&&&&%%###%%%%%%%%%########%%&&&&&&&&%############## 5 +|+&&&&&###&&&&&&&&&&&&&&&&&%###%&&==========&&%########### z &|&==**********G*******####&&&&&==***********G*=&&######### 0 +|+***#####&&&&========*******G****####&&&&&&&&***&%####### # -5 +|+&&&&&&&&&%####%%&&&======&&&&&&&&&&&&%%#####&&***G&&%&&G*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.08 +|+ + + + + + +-+| 0.07 +|+ + + + + + +-+| 0.06 +|+#################################################*F####+-+| 0.05 +|+#################################################*#*##**-+| AKG0.04 +|+#################################################*#*##**-+| 0.03 +|+#################################################*#*##*+*+| 0.02 +|+################################################*###**#+*+| 0.01 +|-----------------------------------------------------------| 0 **********************####*************************#######+-+ 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 20 = 25. 20 +|+ 15 +|+ ###### #### ####### 10 +|+##%%&&&&&%%###%%%%%%%%#########%%&&&&&&&&############### 5 +|+&&&&&###&&&&&&&&&&&&&&&&&%###%&&==========&&############ z &|&==**********G*******####&&&&&==***********G*=&%######### 0 +|+***#####&&&&========*******G****####&&&&&&&&***&%####### # -5 +|+&&&&&&&&&%####%%&&&======&&&&&&&&&&&&%%#####&&***GG&&&GG*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.03 +|+ + + + + + +-+| 0.025 +|+ + + + + + F* +-+| #|#################################################***##*** | 0.02 +|+################################################*##**##*-+| AKG0.015 +|+###############################################*###**##*-*| 0.01 +|+####################***########################*###**##***| #|####################*##**######################*####**##** | 0.005 +|-----------------------------------------------------------| 0 *****####************######********##************#+#######+-+ 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 25 = 30. 20 +|+ 15 +|+ ###### #### ####### 10 +|+##%%&&&&&%%###%%%%%%%%#########%%&&&&&&&&%############## 5 +|+&&&&&###&&&&&&&&&&&&&&&&&%###%&&==========&&############ z &|&==**********G*******####&&&&&==***********G*=&%######### 0 +|+***#####&&&&========*******G****####&&&&&&&&***&######## # -5 +|+&&&&&&&&&%####%%&&&======&&&&&&&&&&&&%%#####&&***GG##%GG*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+##G##G## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.025 +|+ + + + + + +-+| +| + + + + + F +| 0.02 +|+################################################**##*#*+-+| 0.015 +|+################################################***#*#*+-+| AKG #|################################################**#*#*##* | 0.01 +|+###############################################*##*#*##*-+| 0.005 +|+####################***#######################**###**##*-+| +|-----------------------------------------------------------| 0 ******##**************#####**********************#+###*###+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 30 = 35. 20 +|+ 15 +|+ ######## ###### ##%%%%%## 10 +|+#%%&&&&&&&%###%%&&&&&%%########%%&&&&&&&&%############## 5 +|+&&&&#####&&&&&&&&###&&&&&%##%%&&==========&&%########### z &|&==**********G*******####&&&&&===**********G**&&######### 0 +|+***######&&&========*******G****#####&&&&&&&***&%####### # -5 +|+&&&&&&&&&%%###%&&&&======&&&&&&&&&&&&&%%####&&***GG###GG*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+##G##G## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.012 +|+ + + + + + +-+| 0.01 +|+ + + *F + + + +-+| #|####################****################################# | 0.008 +|+###################*##*##############################**+-+| AKG0.006 +|+####*##############*##**#########################**#*#*+-+| 0.004 +|+##****############*####*#########################*#**##*-+| #|###*##**###########*####*########***#############*##**##* | 0.002 +|-----------------------------------------------------------| 0 ****######***********######*******#####************####*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 35 = 40. 20 +|+ 15 +|+ ######## ##%%%%%## 10 +|+#%%&&&&&&&%####################%%&&&&&&&&%############## 5 +|+&&&######&&&&&&&&&%#########%%&&==========&&%########### z &|&==**********G*****&&&&&&&&&&&==***********G**&&######### 0 +|+**######&&&&=====****G*****G****#####&&&&&&&***&%####### # -5 +|+&&&&&&&&&%%###%%&&&======&&&&&&&&&&&&&%%####&&***GG###GG*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+##G##G## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.012 +|+ + + + + + F +-+| 0.01 +|+ + + + + + * +-+| #|###################################################***### | 0.008 +|+##################################################***#*+-+| AKG0.006 +|+##################################################***#**-+| 0.004 +|+###***############################################***#**-+| #|###*##*############################################****#* | 0.002 +|-----------------------------------------------------------| 0 ****######*************************####*************###*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 40 = 45. 20 +|+ 15 +|+ ####### ###%%%## 10 +|+#%%&&&&&&%%####################%%&&&&&&&&%############## 5 +|+&&&&#####&&&&&&&&&%##########%&&==========&&%########### z &|&==**********G*****&&&&&&&&&&&==***********G*=&&######### 0 +|+**######&&&&=====****G*****G****#####&&&&&&&***&######## # -5 +|+&&&&&&&&&%#####%&&&======&&&&&&&&&&&&%%#####&&***GG###GG*G -10 +|------------------------------------------------------------ -15 +-+#######+#########+#########+#########+#########+##G##G## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.025 +|+ + + + + + * *F+-+| +| + + + + + * ** +| 0.02 +|+#################################################*#*#**+-+| 0.015 +|+#################################################*#*#*#*-+| AKG #|##################################################*#*#*#* | 0.01 +|+#################################################*#**##*-+| 0.005 +|+#################################################*#**##*-+| +|-----------------------------------------------------------| 0 ******##********************************************###*##+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 45 = 50. 20 +|+ | ######## ##%%%%%## 10 +|+%%&&&&&&&&&%%%%%##############%%&&&====&&&%############# &|&&&######****G*&&&&&&%%%%%%%%&&=====*******G=&%########## z 0 +|+********=====********G*****G*******###&&&&****&%######## &|&&&&&&&&&&&%%#%&&===========&&&&&&&&&&&&%%##&&&***GG####G&G -10 +|+%%%%%%%%######################%%%%%%##########&&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.04 +|+ + + + + + +-+| 0.035 +|+ + + + + + +-+| 0.03 +|+##################################################F##**+-+| 0.025 +|+#################################################*#*#**+-+| AKG 0.02 +|+#################################################*#*#*#*-+| 0.015 +|+#################################################*#**##*-+| 0.01 +|+#################################################*##*##*-+| 0.005 +|-----------------------------------------------------------| 0 ****************************************************###*##+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 50 = 55. 20 +|+ | ###%%### ##%%%%%## 10 +|+%%&&&&&&&&&%%%%%##############%&&&&====&&&%############# &|&&&######****G*&&&&&&%%%%%%%%&&=====*******G=&%########## z 0 +|+*********====********G*****G*******###&&&&****&&######## &|&&&&&&&&&&&%%#%&&===========&&&&&&&&&&&&%%##&&&***GG####G&G -10 +|+%%%%%%%%######################%%%%%%%#########&&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.02 +|+ + + + + + +-+| +| + + + + + F * +| 0.015 +|+##################################################**#**+-+| #|###################################################**#**# | AKG 0.01 +|+#################################################*#*#*#*-+| #|##################################################*#*#*#* | 0.005 +|+#################################################*#*#*#*-+| +|-----------------------------------------------------------| 0 ******##*********************************************##*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 55 = 60. 20 +|+ | ###%%### ##%%%%%## 10 +|+%%&&&&&&&&&%%%%%##############%&&&&====&&&%############# &|&&&######****G*&&&&&&%%%%%%%%&&=====*******G=&%########## z 0 +|+*********====********G*****G*******###&&&&****&&######## &|&&&&&&&&&&&%%#%&&===========&&&&&&&&&&&&%%##&&&***GG####G&G -10 +|+%%%%%%%%######################%%%%%%%#########&&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.007 +|+ + + + + + +-+| 0.006 +|+ + + + + + F +-+| 0.005 +|+##################################################**###+-+| 0.004 +|+##################################################**#**+-+| AKG #|###################################################*#**#* | 0.003 +|+###**#############################################*#**#*-+| 0.002 +|+##****############################################*#**#*-+| 0.001 +|-----------------------------------------------------------| 0 *****#####*************************###***************##*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 60 = 65. 20 +|+ | ###%%%%## ##%%%%%%%# 10 +|+%&&&&&&&&&&&%%%%%#############%&&&&====&&&%############# &|&&&######****G*&&&&&&%%%%%%%%&&======******G=&&########## z 0 +|+*********====********G*****G********###&&&&****&######## &|&&&###&&&&&&%#%&&===========&&&&&&&&&&&&&%##%&&***GG####G&G -10 +|+%%&&&&%%%##############%%####%%%%%%%%#########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.0035 +|+ *F + + + + + +-+| 0.003 +|+ *** + + + + + * * +-+| 0.0025 +|+##*##*############################################**#**+-+| 0.002 +|+##*##*############################################*#***+-+| AKG #|###*###*#########################***###############*#***# | 0.0015 +|+##*###*#########################*#**##############*#***+-+| 0.001 +|+#*####*########################*###**#############*#**#*-+| 0.0005 +|-----------------------------------------------------------| 0 ****######+***********************######*************##*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 65 = 70. 20 +|+ | ##%%%%%%%# 10 +|+#####%&&&&&&%%%%%#############%&&&&====&&&%############# &|&&&&&G*******G*&&&&&&%%%%%%%%&&======******G=&&%######### z 0 +|+*****========********G*****G********###&&&&****&######## &|&&&&%#%%%%%%##%&&===========&&&&&&&&&&&&&%##%&&***GG####G&G -10 +|+#######################%%####%%%%%%%%#########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.003 +|+ + + + + + F +-+| 0.0025 +|+ + + + + + * +-+| #|###################################################*#**## | 0.002 +|+#################################**###############*#***+-+| AKG0.0015 +|+################################***###############*#***+-+| 0.001 +|+################################*##*##############*#***+-+| #|################################*###**#############*#***# | 0.0005 +|-----------------------------------------------------------| 0 **********************************######*************##*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 70 = 75. 20 +|+ | ##%%%%%## 10 +|+#####%&&&&&%%%%%##############%%&&&====&&&%############# &|&&&&&G*******G*&&&&&&%%%%%%%%&&=====*******G=&&########## z 0 +|+*****========********G*****G********###&&&&***&&######## &|&&&%%#%%%%%###%&&===========&&&&&&&&&&&&%%##%&&***GGG###G&G -10 +|+#############################%%%%%%%%#########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.004 +|+ + + + + + F +-+| +| + + + + + * +| 0.003 +|+###################################################**##+-+| #|####################################################**#** | AKG0.002 +|+##################################################*#*#**-+| #|###################################################*#*#** | 0.001 +|+##################################################*#**#*-+| +|-----------------------------------------------------------| 0 ***********************************####***************#**#*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 75 = 80. 20 +|+ | ##%%%%%## 10 +|+#####%&&&&&%%%%%##############%%&&&====&&&%############# &|&&&&&G*******G*&&&&&&%%%%%%%%&&=====*******G=&%########## z 0 +|+*****========********G*****G********##&&&&****&&######## &|&&&%%#%%%%%###%&&===========&&&&&&&&&&&&%%##&&&***GGG###G&G -10 +|+#############################%%%%%%%%#########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.007 +|+ + + + + + +-+| 0.006 +|+ + + + + + F *+-+| 0.005 +|+###################################################**#**-+| 0.004 +|+###################################################**#**-+| AKG #|####################################################**#** | 0.003 +|+##################################################*#*#**-+| 0.002 +|+##################################################*#**#*-+| 0.001 +|-----------------------------------------------------------| 0 ***********************************###****************#**#+** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 80 = 85. 20 +|+ | ##%%%%%## 10 +|+#####%&&&&&%%%%%##############%%&&&====&&&%############# &|&&&&&G*******G*&&&&&&%%%%%%%%&&=====*******G=&&########## z 0 +|+*****========********G*****G********##&&&&&***&&######## &|&&&%%##%%%%###%&&===========&&&&&&&&&&&&%%##&&&***GGG###G&G -10 +|+##############################%%%%%%%#########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.003 +|+ + + + + + +-+| 0.0025 +|+ + + + + + * F+-+| #|####################################################*##** | 0.002 +|+###################################################**#**-+| AKG0.0015 +|+###################################################**#**-+| 0.001 +|+##################################################*#**#*-+| #|#################################***###############*#**#* | 0.0005 +|-----------------------------------------------------------| 0 ***********************************####***************#*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 85 = 90. 20 +|+ | ##%%%%%## 10 +|+#####%&&&&&%%%%%##############%%&&&====&&&%############# &|&&&&&G*******G*&&&&&&%%%%%%%%&&=====*******G=&&########## z 0 +|+*****========********G*****G********##&&&&&***&&######## &|&&&%%##%%%%###%&&===========&&&&&&&&&&&&%%##&&&***GGG###G&G -10 +|+##############################%%%%%%%#########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.002 +|+ + + + + + +-+| +| + + + + + F +| 0.0015 +|+#####################################################**+-+| #|####################################################*#**# | AKG 0.001 +|+###################################################****+-+| #|##################################*################*#**#* | 0.0005 +|+################################*#**##############*#**#*-+| +|-----------------------------------------------------------| 0 **********************************#####**************##*##*** 0 2 4 6 8 10 12 x line 0: warning: iconv failed to convert degree sign multiplot> " font ":Bold,8.8" textcolor rgb " ^ line 0: invalid command | n = 5 + 90 = 95. 20 +|+ | ##%%%%%## 10 +|+#####%&&&&&%%%%###############%%&&&====&&&%############# &|&&&&&G*******G*&&&&&&%%%%%%%%&&=====*******G=&&########## z 0 +|+*****========********G*****G********##&&&&&***&&######## &|&&&%%##%%%%###%&&===========&&&&&&&&&&&&%%##%&&***GGG###G&G -10 +|+##############################%%%%%%##########%&*GGGGGGG*G +|------------------------------------------------------------ -20 +-+#######+#########+#########+#########+#########+######## + 0 2 4 6 8 10 12 |-----------------------------------------------------------| 0.003 +|+ + + + + + +-+| 0.0025 +|+ + + + + + F +-+| #|######################################################**# | 0.002 +|+#####################################################**+-+| AKG0.0015 +|+##################################################*##**+-+| 0.001 +|+##################################################**#**+-+| #|##################################*################**#**# | 0.0005 +|-----------------------------------------------------------| 0 ***********************************####**************##*##*** 0 2 4 6 8 10 12 x : x z init001 : 0.00000 -0.8105 init002 : 3.00000 3.5391 init003 : 6.00000 -1.7124 init004 : 9.00000 4.0320 init005 : 12.00000 -8.5471 xg(187) : 11.21608 -9.4603 xg(181) : 10.85427 -9.7712 xg(200) : 12.00000 -7.2812 xg(182) : 10.91457 -10.2273 xg(174) : 10.43216 -11.4441 xg(172) : 10.31156 -8.8245 xg(193) : 11.57789 -11.0516 xg(194) : 11.63819 -9.0354 xg(175) : 10.49246 -6.5538 xg(195) : 11.69849 -4.7223 xg(192) : 11.51759 -9.6695 xg(176) : 10.55276 -11.3703 xg(191) : 11.45729 -9.1218 xg(174) : 10.43216 -6.8017 xg(192) : 11.51759 -10.3950 xg(177) : 10.61307 -7.8704 xg(192) : 11.51759 -8.0913 xg(177) : 10.61307 -9.5689 xg(192) : 11.51759 -5.1636 xg(191) : 11.45729 -8.0578 xg(175) : 10.49246 -10.7906 xg(187) : 11.21608 -13.0391 xg(176) : 10.55276 -11.2101 xg(187) : 11.21608 -11.1488 xg(176) : 10.55276 -13.1654 xg(187) : 11.21608 -12.8364 xg(188) : 11.27638 -12.0014 xg(177) : 10.61307 -8.9976 xg(177) : 10.61307 -12.9564 xg(188) : 11.27638 -10.2673 xg(079) : 4.70352 -2.1390 xg(187) : 11.21608 -11.8203 xg(177) : 10.61307 -4.8689 xg(178) : 10.67337 -9.6049 xg(178) : 10.67337 -12.9456 xg(184) : 11.03518 -10.6212 xg(189) : 11.33668 -11.3585 xg(189) : 11.33668 -10.7078 xg(177) : 10.61307 -13.7737 xg(189) : 11.33668 -8.7052 xg(189) : 11.33668 -10.3655 xg(177) : 10.61307 -12.4904 xg(189) : 11.33668 -9.3497 xg(189) : 11.33668 -15.2945 xg(177) : 10.61307 -8.2313 xg(177) : 10.61307 -9.1427 xg(189) : 11.33668 -9.9701 xg(177) : 10.61307 -11.6712 xg(189) : 11.33668 -13.5593 xg(177) : 10.61307 -9.1543 xg(178) : 10.67337 -8.0429 xg(178) : 10.67337 -11.5445 xg(189) : 11.33668 -13.7580 xg(178) : 10.67337 -9.1690 xg(178) : 10.67337 -8.6468 xg(179) : 10.73367 -14.1172 xg(189) : 11.33668 -13.1706 xg(179) : 10.73367 -13.1292 xg(189) : 11.33668 -16.8338 xg(180) : 10.79397 -14.6806 xg(023) : 1.32663 2.5897 xg(179) : 10.73367 -11.8976 xg(188) : 11.27638 -9.0938 xg(188) : 11.27638 -9.4866 xg(188) : 11.27638 -16.1962 xg(179) : 10.73367 -11.0396 xg(179) : 10.73367 -5.1035 xg(181) : 10.85427 -12.6151 xg(181) : 10.85427 -10.6104 xg(181) : 10.85427 -10.4576 xg(180) : 10.79397 -9.1368 xg(180) : 10.79397 -9.3063 xg(180) : 10.79397 -11.0718 xg(180) : 10.79397 -9.5725 xg(180) : 10.79397 -11.7316 xg(180) : 10.79397 -10.5972 xg(191) : 11.45729 -9.3000 xg(180) : 10.79397 -13.1912 xg(191) : 11.45729 -10.6949 xg(180) : 10.79397 -12.2453 xg(191) : 11.45729 -9.5084 xg(180) : 10.79397 -12.4260 xg(190) : 11.39698 -10.2325 xg(188) : 11.27638 -8.0715 xg(188) : 11.27638 -12.7952 xg(188) : 11.27638 -12.7179 xg(181) : 10.85427 -13.7822 xg(188) : 11.27638 -8.6522 xg(188) : 11.27638 -10.2669 xg(188) : 11.27638 -10.0293 xg(188) : 11.27638 -10.0375 xg(188) : 11.27638 -11.5139 xg(188) : 11.27638 -12.3903 xg(188) : 11.27638 -15.9961 xg(181) : 10.85427 -14.2000 Number of evaluations: 5 + 95 = 100. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe01.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/02_design_of_experiments/stk_example_doe01.m ***** test stk_example_doe01; close all; #=========================# # stk_example_doe01 # #=========================# 'stk_example_doe01' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/02_design_of_experiments/stk_example_doe01.m STK_EXAMPLE_DOE01 Examples of two-dimensional designs All designs are constructed on the hyper-rectangle BOX = [0; 2] x [0; 4]. Examples of the following designs are shown: a) Regular grid --> stk_sampling_regulargrid, b) "Maximin" latin hypercube sample --> stk_sampling_maximinlhs, c) RR2-scrambled Halton sequence --> stk_sampling_halton_rr2, d) Uniformly distributed random sample --> stk_sampling_randunif. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb06.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb06.m ***** test stk_example_kb06; close all; #========================# # stk_example_kb06 # #========================# 'stk_example_kb06' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb06.m STK_EXAMPLE_KB06 Ordinary kriging VS kriging with a linear trend The same dataset is analyzed using two variants of kriging. The left panel shows the result of ordinary kriging, in other words, Gaussian process interpolation assuming a constant (but unknown) mean. The right panel shows the result of adding a linear trend in the mean of the Gaussian process. The difference with the left plot is clear in extrapolation: the first predic- tor exhibits a "mean reverting" behaviour, while the second one captures an increasing trend in the data. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb02.m ***** test stk_example_kb02; close all; #========================# # stk_example_kb02 # #========================# 'stk_example_kb02' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb02.m STK_EXAMPLE_KB02 Ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noiseless dataset. The model and data are the same as in stk_example_kb01, but this time the parameters of the covariance function are estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.2108 2.3026 0.7562 lognoisevariance = -Inf line 0: warning: iconv failed to convert degree sign | True function and observed data 1.5 +|+ | ***G* +--------------------+ #|#######***#####***########################|***?***True function| 1 +|+#####**#########***######################+---G---Observations-+ #|####**#############***######################################### #|###**################**######################################## 0.5 +|+#**##################**############################***######## #|#G*####################**########################****##*G**#### #|**######################**#####################G**########***## F1 0 *|+########################**###################**############*** G|##########################**#################**###############** #|###########################**###############**#################** -0.5 +|+###########################**#############**################## #|#############################**###########*#################### #|##############################*G*#######**##################### -1 +|+###############################**#####**###################### #|#################################******######################## +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02n.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb02n.m ***** test stk_example_kb02n; close all; #=========================# # stk_example_kb02n # #=========================# 'stk_example_kb02n' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb02n.m STK_EXAMPLE_KB02N Noisy ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noisy dataset. The model and data are the same as in stk_example_kb02, but this time the parameters of the covariance function and the variance of the noise are jointly estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.098610 2.302585 0.613435 lognoisevariance = -3.0915 True noise variance = 0.0400 Estimated noise variance = 0.0454 line 0: warning: iconv failed to convert degree sign | True function and noisy observed data 1.5 +|+ | G ***** +--------------------+ #|#######***##G##G**########################|***?***True function| 1 +|+####G**#########**G######################+---G---Observations-+ #|####**#############***######################################### #|###**################**######################################## 0.5 +|+#**##################G*##########################G#***######## G|#**####################**########################****#G**G*##G# #|*G######################**#####################***########***## F1 0 *|+########################**###################**############*** *|##########################**#################**G##############**G #|###########################**G##############**#################** -0.5 +|+#########################G#**#############**################## #|#############################**###########*G################### #|##############################***G######**##################### -1 +|+###############################**#####*G###################### #|#################################***G**######################## +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb08.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb08.m ***** test stk_example_kb08; close all; #========================# # stk_example_kb08 # #========================# 'stk_example_kb08' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb08.m STK_EXAMPLE_KB08 Generation of conditioned sample paths made easy It has been demonstrated, in stk_example_kb05, how to generate conditioned sample paths using unconditioned sample paths and conditioning by kriging. This example shows how to do the same in a more concise way, letting STK take care of the details. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb07.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb07.m ***** test stk_example_kb07; close all; #========================# # stk_example_kb07 # #========================# 'stk_example_kb07' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb07.m STK_EXAMPLE_KB07 Simulation of sample paths from a Matern process Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. line 0: warning: iconv failed to convert degree sign |--Matern, nu = 0.5------| |--Matern, nu = 1.5------| 4 +|+ + + + +-*| 3 +|+ + + + +-+| *|*=$$$$$$ $** + *****| 2 +|+## + &&+ + +-+| 2 =|=**=**=***#######****###| @|****&&&#&&&&&@##****## $| 0 *|#####****#####*####&##%#| 1 =|*&$**%&&&===####*%%**##$| response z#|######*####****===###&&response z*|*******@=####**##=&#####| -2 *|@#%%*###*@#&***==$====&=| -1 *|@@=*@=***#****######====| -4 +|#######@######$$#####===| #|***===####**#***####@***| +|------------------------| -2 +|------------------------| -6 +-+###+######+#####+###+-+ -3 +-+##########+#####***#+-+ -1 -0.5 0 0.5 1 -1 -0.5 0 0.5 1 |--Matern, nu = 2.5------| |--Matern, nu = 10.0-----| 4 +|+ + + + +-+| 3 +|+ + + + +-+| 3 @|+ + %%% && + +-+| 2 +|** + $$***** ** +-+| 2 +|@########%%#&&&&&&######| *|**********%%%********** | 1 =|@@@@@@&&%%@&***%@&&@@@@@| 1 #|=$$$$$****###&&%%&&**@@@| response z#|#####&&******=#####%%% response z*|#####**####*##########**| 0 *|*==*##=*=**#####**######| -1 &|**=*####&&===#$##====###| -1 *|*****###*####*******&**&| *|#***=####==@@@@@@@$$$***| -2 $|------------------------| -2 +|------------------------| -3 +-+###+######+#####+###+-+ -3 +-+###+######+#####+###+-+ -1 -0.5 0 0.5 1 -1 -0.5 0 0.5 1 input variable x input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01n.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb01n.m ***** test stk_example_kb01n; close all; #=========================# # stk_example_kb01n # #=========================# 'stk_example_kb01n' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb01n.m STK_EXAMPLE_KB01N Ordinary kriging in 1D, with noisy data This example shows how to compute ordinary kriging predictions on a one-dimensional noisy dataset. The Gaussian Process (GP) prior is the same as in stk_example_kb01. The observation noise is Gaussian and homoscedastic (constant variance). Its variance is assumed to be known. Note that the kriging predictor, which is the posterior mean of the GP, does NOT interpolate the data in this noisy example. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.6931 1.3863 0.9163 lognoisevariance = -3.2189 line 0: warning: iconv failed to convert degree sign | True function and observed data 1.5 +|+ | G******* +--------------------+ #|#######***##G##G***#######################|***?***True function| 1 +|+####G**##########*G*#####################+---G---Observations-+ #|####**##############**######################################### #|###**################*G###########################G############ 0.5 G|+#**##################**###########################******G###G# #|*G######################**######################***###G##***### 0 +|*########################**####################**##########***# *|##########################**#################**G#############*** #|###########################**###############**#################*G -0.5 +|+#########################G#*G#############**################## * #|#############################**###########*G################### #|##############################**#G#######**#################### -1 +|+##############################***#####*G###################### #|#################################***G***####################### +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb01.m ***** test stk_example_kb01; close all; #========================# # stk_example_kb01 # #========================# 'stk_example_kb01' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb01.m STK_EXAMPLE_KB01 Ordinary kriging in 1D, with noiseless data This example shows how to compute ordinary kriging predictions on a one-dimensional noiseless dataset. The word 'ordinary' indicates that the mean function of the GP prior is assumed to be constant and unknown. A Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function are assumed to be known (i.e., no parameter estimation is performed here). Note that the kriging predictor, which is the posterior mean of the GP, interpolates the data in this noiseless example. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.6931 1.3863 0.9163 lognoisevariance = -Inf line 0: warning: iconv failed to convert degree sign | True function and observed data 1.5 +|+ | ****G** +--------------------+ #|#######***#####****#######################|***?***True function| 1 +|+####***##########***#####################+---G---Observations-+ #|####**##############**######################################### #|###**################**######################################## 0.5 +|+#**##################**###########################*****G###### #|*G######################**######################***######***### 0 +|*########################**####################G*##########***# G|##########################**#################***#############*** #|###########################**###############**#################** -0.5 +|+###########################**#############**################## * #|#############################**###########**################### #|##############################*G#########**#################### -1 +|+##############################***#####**###################### #|#################################*******####################### +|------------------------------------------------------------------ -1.5 +-+##############+###############+################+############## + -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb03.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb03.m ***** test stk_example_kb03; close all; #========================# # stk_example_kb03 # #========================# 'stk_example_kb03' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb03.m STK_EXAMPLE_KB03 Ordinary kriging in 2D An anisotropic Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function (variance, regularity and ranges) are estimated using the Restricted Maximum Likelihood (ReML) method. The mean function of the GP prior is assumed to be constant and unknown. This default choice can be overridden by means of the model.lm property. The function is sampled on a space-filling Latin Hypercube design, and the data is assumed to be noiseless. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. BOX = 2-dimensional hyper-rectangle (stk_hrect object): : x_1 x_2 lower_bounds : -5 0 upper_bounds : 10 15 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb09.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb09.m ***** test stk_example_kb09; close all; #========================# # stk_example_kb09 # #========================# 'stk_example_kb09' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb09.m STK_EXAMPLE_KB09 Generation of sample paths conditioned on noisy observations A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noisy observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique (stk_generate_samplepaths function). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb05 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb05.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/examples/01_kriging_basics/stk_example_kb05.m ***** test stk_example_kb05; close all; #========================# # stk_example_kb05 # #========================# 'stk_example_kb05' is a script from the file /build/reproducible-path/octave-stk-2.8.1/debian/octave-stk/usr/share/octave/packages/stk-2.8.1/examples/01_kriging_basics/stk_example_kb05.m STK_EXAMPLE_KB05 Generation of conditioned sample paths A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noiseless observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique. In short, this means that unconditioned sample path are simulated first (using stk_generate_samplepaths), and then conditioned on the observations by kriging (using stk_conditioning). Note: in this example, for pedagogical purposes, conditioned samplepaths are simulated in two steps: first, unconditioned samplepaths are simulated; second, conditioned samplepaths are obtained using conditioning by kriging. In practice, these two steps can be carried out all at once using stk_generate_samplepath (see, e.g., stk_example_kb09). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb09 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/error/stk_error.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/error/stk_error.m ***** shared errmsg, mnemonic, badstack errmsg = 'Go ahead, make my day.'; mnemonic = 'ClintEastwood'; badstack = 0; % not a valid stack structure ***** error stk_error(errmsg, mnemonic); ***** error stk_error (errmsg, mnemonic, badstack); ***** error id=STK:stk_error:InvalidArgument stk_error (errmsg, mnemonic, badstack); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolrel.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/test/stk_isequal_tolrel.m ***** shared r1, r2, r3, a, b, tolrel a = 1.01; b = 1.02; tolrel = 0.1; ***** error rr = stk_isequal_tolrel(); ***** error rr = stk_isequal_tolrel(a); ***** test r1 = stk_isequal_tolrel(a, b); ***** test r2 = stk_isequal_tolrel(a, b, tolrel); ***** test r3 = stk_isequal_tolrel(a, [b b]); ***** test assert (isequal (r1, false)); ***** test assert (isequal (r2, true)); ***** test assert (isequal (r3, false)); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolrel(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolrel(a, b, tolrel)) 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/test/stk_test.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/test/stk_test.m ***** assert(isempty([])) % support for test assert shorthand ***** assert((1 + 1) == 2) ***** test a=1; ***** test assert(~exist('a')); ***** shared a % create a shared variable ***** test a = 3; % assign to a shared variable ***** test assert(a == 3); % variable should equal 3 in this second 'test' block ***** shared b, c % replace shared variables {'a'} --> {'b', 'c'} ***** test assert(~exist('a')); % a no longer exists ***** test assert(isempty(b)); % variables start off empty ***** shared a % recreate a shared variable that had been deleted ***** test assert (isempty(a)); % it is empty, even though it was equal to 3 before ***** shared a, b, c % creates three shared variables a = 1; b = 2; c = 3; % give values to all variables, in the same block ***** assert(isequal([a, b, c], [1, 2, 3])); % test all of them together ***** test c=6; % update a value ***** test % show that the update sticks between blocks assert(isequal([a, b, c], [1, 2, 6])); ***** shared % clear all shared variables ***** assert(~exist('a')) % show that they are cleared ***** error test % not enough input arguments ***** error test(1, 2, 3, 4) % too many input args ***** error garbage % usage on nonexistent function should be ***** error stt_test('test', 'bogus'); % undefined function error ***** error stk_test('test', 'bogus'); % error raised by stk_test itself ***** error stk_test(); ***** error stk_test('disp', 'verbose', [], 'extra arg !!!'); ***** error stk_test([]) ***** error stk_test(0.0) ***** error stk_test('stk_mindist', 0.0) ***** error stk_test('stk_mindist', 'dudule') 24 tests, 24 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolabs.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/test/stk_isequal_tolabs.m ***** shared r1, r2, a, b, tolabs a = 1.01; b = 1.02; tolabs = 0.1; ***** error rr = stk_isequal_tolabs(); ***** error rr = stk_isequal_tolabs(a); ***** test r1 = stk_isequal_tolabs(a, b); ***** test r2 = stk_isequal_tolabs(a, b, tolabs); ***** test assert(~r1); ***** test assert(r2); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolabs(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolabs(a, b, tolabs)) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_cdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_cdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_cdf ([1; 3], 1, [1 10]), ... [0.5, ... % normcdf ((1 - 1) / 1) 0.5; ... % normcdf ((1 - 1) / 10) 0.5 * erfc(-sqrt(2)), ... % normcdf ((3 - 1) / 1) 0.5 * erfc(-0.1*sqrt(2)) ... % normcdf ((3 - 1) / 10) ], eps)); ***** test [p, q] = stk_distrib_normal_cdf (10); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 7.6198530241604975e-24, eps)); ***** assert (isequal (stk_distrib_normal_cdf ( 0.0), 0.5)); ***** assert (isequal (stk_distrib_normal_cdf ( inf), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_cdf ( nan))); ***** assert (isnan (stk_distrib_normal_cdf (0, 0, -1))); ***** assert (isequal (stk_distrib_normal_cdf (0, 0, 0), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (0, 1, 0), 0.0)); ***** assert (isequal (stk_distrib_normal_cdf (1, 0, 0), 1.0)); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_pdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_pdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_pdf ([1; 3], 1, [1 10]), ... [1 / sqrt(2 * pi) ... % normpdf ((1 - 1) / 1) 0.1 / sqrt(2 * pi); ... % normpdf ((1 - 1) / 10) / 10 exp(-2) / sqrt(2 * pi) ... % normpdf ((3 - 1) / 1) 3.910426939754558780e-2 ... % normpdf ((3 - 1) / 10) / 10 ], eps)); ***** assert (isequal (stk_distrib_normal_pdf (inf), 0.0)); ***** assert (isequal (stk_distrib_normal_pdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_pdf (nan))); ***** assert (isnan (stk_distrib_normal_pdf (0, 0, -1))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_ei.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_ei (0.0), 1 / sqrt (2 * pi), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_normal_ei (linspace (-10, 10, 200)); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); ei = stk_distrib_normal_ei (M, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_normal_ei (M, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_normal_ei (-M, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_ei.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_student_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_student_ei (0, 2), 1 / sqrt (2), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_student_ei (linspace (-10, 10, 200), 3.33); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei, nu M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); nu = 2; ei = stk_distrib_student_ei (M, nu, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_student_ei (M, nu, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_student_ei (-M, nu, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_bivnorm_cdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_bivnorm_cdf.m ***** test z1 = [0 1; -1 2]; z2 = [0 1; 1 -2]; z = cat (3, z1, z2); % 2 x 2 x 2 mu1 = 0; % 1 x 1 x 1 mu2 = [0 1]; % 1 x 2 x 1 sigma1 = [1 3]; % 1 x 2 x 1 sigma2 = [1; 2]; % 2 x 1 x 1 rho = [0; 0.5]; % 2 x 1 x 1 %% BROADCASTING => the result will be a 2 x 2 matrix p = stk_distrib_bivnorm_cdf (z, mu1, mu2, sigma1, sigma2, rho); p11 = 0.25; % mvncdf ([ 0 0], [0 0], [1 0; 0 1]); p12 = 0.315279329909118; % mvncdf ([ 1 1], [0 1], [9 0; 0 1]); p21 = 0.146208349559646; % mvncdf ([-1 1], [0 0], [1 1; 1 4]); p22 = 0.064656239880040; % mvncdf ([ 2 -2], [0 1], [9 3; 3 4]); assert (stk_isequal_tolabs (p, [p11 p12; p21 p22], 1e-14)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -10], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 0], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 10], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-inf inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-10 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([0 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([10 inf], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test % A mixture of singular and non-singular cases p = stk_distrib_bivnorm_cdf ([0 0], 0, 0, [1; 0], 1, 0); assert (isequal (p, [0.25; 0.5])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_pdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_student_pdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_pdf ([1; 3], [1; 2], [0 1], [1 10]), ... [0.50 / pi ... % tpdf ((1 - 1) / 10, 1) 0.10 / pi; ... % tpdf ((1 - 1) / 10, 1) / 10 1 / (11 * sqrt(11)) ... % tpdf ((3 - 0) / 1, 2) / 1 3.4320590294804165e-02 ... % tpdf ((3 - 1) / 10, 2) / 10 ], eps)); ***** assert (isequal (stk_distrib_student_pdf ( inf, 1.0), 0.0)); ***** assert (isequal (stk_distrib_student_pdf (-inf, 1.0), 0.0)); ***** assert (isnan (stk_distrib_student_pdf ( nan, 1.0))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_cdf.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_student_cdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_cdf ([-1; 0; 1], [1 2], 0, [1 10]), ... [0.25, ... % tcdf ((-1 - 0)/1, 1) 4.6473271920707004e-01; ... % tcdf ((-1 - 0)/10, 2) 0.50, ... % tcdf (( 0 - 0)/1, 1) 0.50; ... % tcdf (( 0 - 0)/10, 2) 0.75, ... % tcdf (( 1 - 0)/1, 1) 5.3526728079292996e-01 ... % tcdf (( 1 - 0)/10, 2) ], 4 * eps)) ***** test [p, q] = stk_distrib_student_cdf (1e10, 2); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 4.999999999999999999925e-21, 10 * eps)); ***** assert (isequal (stk_distrib_student_cdf (0.0, 1), 0.5)); ***** assert (isequal (stk_distrib_student_cdf (inf, 1), 1.0)); ***** assert (isequal (stk_distrib_student_cdf (-inf, 1), 0.0)); ***** assert (isnan (stk_distrib_student_cdf (nan, 1))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_crps.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/distrib/stk_distrib_normal_crps.m ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 0.0), 0.0)) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 1.0), (sqrt(2) - 1)/sqrt(pi))) ***** shared n, x_obs, mu, sigma, crps, crps_exp x_obs = [ 1.78; -2.29; -1.62; -5.89; 2.88; 0.65; 2.74; -3.42]; % observations mu = [-0.31; -0.59; 1.48; -1.57; -0.05; -0.27; 1.05; 1.27]; % predictions sigma = [ 2.76; 6.80; 1.63; 1.19; 4.98; 9.60; 5.85; 2.24]; % standard dev n = size(x_obs, 1); crps = stk_distrib_normal_crps (x_obs, mu, sigma); ***** assert (isequal (size (crps), [n, 1])) ***** assert (all (crps >= 0)) ***** assert (stk_isequal_tolabs (crps, stk_distrib_normal_crps(mu, x_obs, sigma))) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (x_obs, mu, 0), abs (x_obs - mu))) crps_ref = [ ... 1.247856605928301 ... 1.757798727719891 ... 2.216236225997414 ... 3.648696666764968 ... 1.832355265287495 ... 2.278618297947438 ... 1.560544734359158 ... 3.455697443411153 ]; assert (stk_isequal_tolabs (crps, crps_ref, 1e-10)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_sprintf_colvect.m ***** shared s ***** test s = stk_sprintf_colvect ([1 1e1], 6); ***** assert (isequal (s, [' 1'; '10'])) ***** test s = stk_sprintf_colvect ([1 1e3], 6); ***** assert (isequal (s, [' 1'; '1000'])) ***** test s = stk_sprintf_colvect ([1 1e5], 6); ***** assert (isequal (s, [' 1'; '100000'])) ***** test s = stk_sprintf_colvect ([1 1e6], 6); ***** assert (isequal (s, ['1e+00'; '1e+06'])) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/misc/text/stk_disp_progress.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_disp_progress.m ***** error stk_disp_progress ('toto ', 0, 1); ***** test stk_disp_progress ('toto ', 1, 1); warning: implicit conversion from numeric to char warning: called from stk_disp_progress at line 53 column 1 __test__ at line 2 column 3 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1718 column 31 toto ***** error stk_disp_progress ('toto ', 2, 1); ***** test stk_disp_progress ('toto ', 1, 2); stk_disp_progress ('toto ', 2, 2); warning: implicit conversion from numeric to char warning: called from stk_disp_progress at line 53 column 1 __test__ at line 3 column 2 test at line 682 column 11 /tmp/tmp.flOm4uHnfl at line 1718 column 31 toto toto 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_fixedpoint.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_sprintf_colvect_fixedpoint.m ***** shared x, s x = [1.2; 3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['1.2'; '3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** shared x, s x = [1.2; -3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, [' 1.2'; '-3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 6); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** shared x, s x = [0.2; 0.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['0.2'; '0.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['0.20'; '0.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['0.20'; '0.48'])) 32 tests, 32 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_scientific.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/text/stk_sprintf_colvect_scientific.m ***** shared x, s x = [1.2; -34567]; ***** test s = stk_sprintf_colvect_scientific(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_scientific(x, 3); ***** assert (isequal(s, ['###'; '###'])) ***** test s = stk_sprintf_colvect_scientific(x, 5); ***** assert (isequal(s, ['#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific(x, 6); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 7); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 8); ***** assert (isequal(s, [' 1.2e+00'; '-3.5e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 9); ***** assert (isequal(s, [' 1.20e+00'; '-3.46e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 10); ***** assert (isequal(s, [' 1.200e+00'; '-3.457e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 11); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 12); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** shared x, s x = [0.9; 0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, ['9.0e-01'; '9.1e-01'; '9.9e-01'; '1.0e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, ['9.00e-01'; '9.10e-01'; '9.90e-01'; '9.99e-01'])) ***** shared x, s x = [0.9; -0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['#####'; '#####'; '#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, [' 9.0e-01'; '-9.1e-01'; ' 9.9e-01'; ' 1.0e+00'])) ***** test x = [1e6; -1e10; 1e-221]; s = stk_sprintf_colvect_scientific(x, 10); assert(isequal(s, [' 1e+006'; '-1e+010'; ' 1e-221'])); 41 tests, 41 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m ***** test stk_test_class ('stk_optim_fminsearch') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m ***** test stk_test_class ('stk_optim_fmincon') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_boxconstrained.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_minimize_boxconstrained.m ***** test % Call fmincon using function name if stk_optim_isavailable ('fmincon') assert (stk_optim_testmin_box ('fmincon')); end ***** test % Call fmincon directly, using algorithm object if stk_optim_isavailable ('fmincon') algo = stk_optim_fmincon ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_box (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_box ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_box (algo)); end ***** error assert (stk_optim_testmin_box ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_box (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_optimizer_/stk_optim_optimizer_.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_optimizer_/stk_optim_optimizer_.m ***** test stk_test_class ('stk_optim_optimizer_') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m ***** test stk_test_class ('stk_optim_octavesqp') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_box.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_optim_testmin_box.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_box'); ***** error b = stk_optim_testmin_box (); ***** assert (stk_optim_testmin_box (algo)); ***** assert (~ stk_optim_testmin_box ('dudule')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_unconstrained.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_minimize_unconstrained.m ***** test % Call fminsearch using function name if stk_optim_isavailable ('fminsearch') assert (stk_optim_testmin_unc ('fminsearch')); end ***** test % Call fminsearch directly, using algorithm object if stk_optim_isavailable ('fminsearch') algo = stk_optim_fminsearch ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_unc (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_unc ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_unc (algo)); end ***** error assert (stk_optim_testmin_unc ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_unc (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_unc.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/optim/stk_optim_testmin_unc.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_unc'); ***** error b = stk_optim_testmin_unc (); ***** assert (stk_optim_testmin_unc (algo)); ***** assert (~ stk_optim_testmin_unc ('dudule')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_exact.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_filldist_exact.m ***** test d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist_exact(x, box); fd2 = stk_filldist_exact(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist_exact(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist_exact(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_gpquadform.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_gpquadform.m ***** shared x, y, z, rx, ry, rz x = rand(5, 2); rx = rand(5, 2) + 1; y = rand(6, 2); ry = rand(6, 2) + 1; z = rand(5, 3); rz = rand(5, 3) + 1; ***** error Q = stk_gpquadform(x, ry, y, ry) ***** error Q = stk_gpquadform(x, rz, y, ry) ***** error Q = stk_gpquadform(x, rx, y, rx) ***** error Q = stk_gpquadform(x, rx, y, rz) ***** error Q = stk_gpquadform(x, rx, z, ry) ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 1/sqrt(2) * ones (11, 5); y = zeros (13, 5); ry = 1/sqrt(2) * ones (13, 5); z = ones ( 7, 5); rz = 1/sqrt(2) * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5 * ones(11, 7))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); y = randn(5, 3); ry = 1 + rand(5, 3); Q1 = stk_gpquadform(x, y, rx, ry, true); % pairwise Q2 = stk_gpquadform(x, y, rx, ry, false); assert(isequal(size(Q1), [5 1])); assert(isequal(size(Q2), [5 5])); assert(stk_isequal_tolabs(Q1, diag(Q2))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); Q1 = stk_gpquadform(x, [], rx, [], true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); Q1 = stk_gpquadform(x, x, rx, rx, true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 2 * ones (11, 5); y = zeros (13, 5); ry = 2 * ones (13, 5); z = ones ( 7, 5); rz = 2 * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5/8 * ones(11, 7))); 17 tests, 17 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_mindist.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_mindist.m ***** test d = 3; x = rand(7, d); md1 = stk_mindist(x); md2 = stk_mindist(stk_dataframe(x)); assert(stk_isequal_tolabs(md1, md2)); ***** test for nc = [0 5 10], x = zeros(0, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nc = [0 5 10], x = rand(1, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nr = [2 5 10], x = zeros(nr, 0); d = stk_mindist(x); assert(isequal(d, 0.0)); end ***** test nrep = 20; TOL_REL = 1e-15; for irep = 1:nrep, n = 2 + floor(rand * 10); d = 1 + floor(rand * 10); x = rand(n, d); z = stk_mindist(x); assert(isequal(size(d), [1, 1])); assert(~isnan(d)); assert(~isinf(d)); % check the result mindist = Inf; for i = 1:(n-1), for j = (i+1):n, mindist = min(mindist, norm(x(i,:) - x(j,:))); end end assert(abs(z - mindist) <= TOL_REL * mindist); end 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_discretized.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_filldist_discretized.m ***** error stk_filldist_discretized(0.0) % incorrect nb of arguments ***** error stk_filldist_discretized(0.0, []) % second arg is empty ***** error stk_filldist_discretized([], 0.0) % first arg is empty ***** test d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist_discretized(x, y); fd2 = stk_filldist_discretized(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; for dim = 1:10, x = rand(n, dim); fd = stk_filldist_discretized(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test for dim = 1:10, x = rand(1, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, norm(x - y))); end ***** test n = 4; for dim = 2:10, x = zeros(n, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, max(stk_dist(x, y)))); end ***** test for dim = [1 3 6], x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_dist.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_dist.m ***** error stk_dist(); ***** error stk_dist(0, 0, 0); ***** error stk_dist(0, 0, 0, 0); ***** error stk_dist(0, ones(1, 2)); ***** error stk_dist(eye(3), ones(1, 2)); ***** error stk_dist(ones(2, 1), zeros(2)); ***** shared x, y, z x = zeros(11, 5); y = zeros(13, 5); z = ones(7, 5); ***** test Dx = stk_dist(x); assert(isequal(Dx, zeros(11))); ***** test Dxx = stk_dist(x, x); assert(isequal(Dxx, zeros(11))); ***** test Dxy = stk_dist(x, y); assert(isequal(Dxy, zeros(11, 13))); ***** test Dzz = stk_dist(z, z); assert(isequal(Dzz, zeros(7))); ***** test Dxz = stk_dist(x, z); assert(stk_isequal_tolabs(Dxz, sqrt(5)*ones(11, 7))); ***** test x = randn(5,3); y = randn(5,3); D1 = stk_dist(x, y, true); % pairwise D2 = stk_dist(x, y); assert(stk_isequal_tolabs(D1, diag(D2))); ***** test x = randn(5,3); D1 = stk_dist(x, [], true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); D1 = stk_dist(x, x, true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); 13 tests, 13 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/dist/stk_filldist.m ***** test %%% exact d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist(x, box); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test %%% discretized d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist(x, y); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; % must be bigger than 2 for dim = 1:10, x = rand(n, dim); fd = stk_filldist(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test %%% exact for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test %%% discretized for dim = 1:6, x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test dim = 3; box = repmat([-1; 1], 1, dim); x = stk_sampling_randunif(20, dim, box); y = stk_sampling_regulargrid(3^dim, dim, box); fd1 = stk_filldist(x, box); fd2 = stk_filldist(x, y); assert(fd1 >= fd2 - 10 * eps); ***** test %%% exact for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end ***** test %%% discretized for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m ***** test stk_test_class ('stk_parallel_engine_none') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_dominatedhv.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/pareto/stk_dominatedhv.m ***** error hv = stk_dominatedhv (); ***** error hv = stk_dominatedhv (-y, 'incorrect ref type'); ***** error hv = stk_dominatedhv (-y, [0 0]); ***** error hv = stk_dominatedhv (-y, [0 0 0 0 0], 0, 'too many input args'); ***** shared y, hv0 % Example from README.TXT in WFG 1.10 y = [ ... 0.598 0.737 0.131 0.916 6.745; ... 0.263 0.740 0.449 0.753 6.964; ... 0.109 8.483 0.199 0.302 8.872 ]; hv0 = 1.1452351120; ***** test hv = stk_dominatedhv (-y); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test yy = stk_dataframe (- y); % Check that @stk_dataframe inputs are accepted hv = stk_dominatedhv (yy); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [], 0); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [0 0 0 0 0]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (1 - y, [1 1 1 1 1]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test r = stk_dominatedhv (-y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** shared y1, y2, y0, S, S1 y0 = [1.00 1.00]; % Reference point y1 = [1.50 1.50]; % Above the reference point y2 = [0.50 0.50]; % Below the reference point ***** assert (isequal (0.00, stk_dominatedhv (y1, y0))); ***** assert (isequal (0.25, stk_dominatedhv (y2, y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y1; y2], y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y2; y1; y2], y0))); ***** test S = stk_dominatedhv (y1, y0, 1); % empty decomposition ***** assert (isequal (size (S.xmin, 1), 0)); ***** test S = stk_dominatedhv (y2, y0, 1); % trivial decomposition ***** assert (isequal (S.sign, 1)); ***** assert (isequal (S.xmin, y2)); ***** assert (isequal (S.xmax, y0)); ***** test S1 = stk_dominatedhv ([y2; y0], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y1], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y2], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test for d = 1:10, y = - 0.5 * ones (1, d); hv = stk_dominatedhv (y); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** test for d = 1:10, y = - 0.5 * ones (1, d); r = stk_dominatedhv (y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** shared y, y_ref, dv, hv0 y1 = [0.25 0.75]; y2 = [0.50 0.50]; y3 = [0.75 0.25]; y_ref = [1 1]; y = {[], y1, y2, y3; [y1; y2], [y1; y3], [y2; y3], [y1; y2; y3]}; dv = 0.25 ^ 2; hv0 = [0 3 4 3; 5 5 5 6] * dv; ***** test hv1 = stk_dominatedhv (y, y_ref); assert (isequal (hv0, hv1)); ***** test r = stk_dominatedhv (y, y_ref, 1); % Check the first decomposition, which should be empty assert (isempty (r(1).sign)); assert (isempty (r(1).xmin)); assert (isempty (r(1).xmax)); % Check the other decompositions for i = 2:6, hv2 = sum (r(i).sign .* prod (r(i).xmax - r(i).xmin, 2)); assert (isequal (hv0(i), hv2)); end ***** test y = (0.3:0.1:0.8)'; hv0 = 0.7; hv1 = stk_dominatedhv (y, 1); r = stk_dominatedhv (y, 1, true); hv2 = sum (r.sign .* prod (r.xmax - r.xmin, 2)); ***** test % four non-dominated points (hypervolume) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 HV = stk_dominatedhv (zi(P(i, :), :), zr, 0); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.2000 0.8000 0.4000 0.6000 0.6000 0.4000 0.8000 0.2000 ***** test % four non-dominated points (decomposition) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 S = stk_dominatedhv (zi(P(i, :), :), zr, 1); HV = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.2000 0.8000 0.4000 0.6000 0.6000 0.4000 0.8000 0.2000 ***** test % a case with 8 points and 5 objectives % http://sourceforge.net/p/kriging/tickets/33 yr = [1.03 0.91 0.96 1.99 16.2]; y = [ ... 0.8180 0.5600 0.1264 1.0755 1.2462; ... 0.8861 0.6928 0.2994 0.7228 0.9848; ... 0.9021 0.8829 0.6060 0.1642 0.4282; ... 0.9116 0.3097 0.8601 0.0468 0.2813; ... 0.9306 0.1429 0.6688 0.1462 1.3661; ... 0.9604 0.3406 0.4046 0.7239 1.8741; ... 0.9648 0.7764 0.5199 0.4098 1.3436; ... 0.9891 0.4518 0.7956 0.1164 1.2025]; hv1 = stk_dominatedhv (y, yr, 0); S = stk_dominatedhv (y, yr, 1); hv2 = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (isequal (size (S.sign), [87 1])); assert (isequal (size (S.xmin), [87 5])); assert (isequal (size (S.xmax), [87 5])); assert (stk_isequal_tolrel (hv1, 1.538677420906463, 2 * eps)); assert (stk_isequal_tolrel (hv1, hv2, eps)); ***** test % with random data NREP = 5; for p = 1:5 for n = 1:10 for i = 1:NREP % Draw random data y = rand (n, p); y = - y ./ (norm (y)); % Compute hypervolume directly hv1 = stk_dominatedhv (y, [], 0); % Compute decomposition, then hypervolume R = stk_dominatedhv (y, [], 1); hv2 = sum (R.sign .* prod (R.xmax - R.xmin, 2)); % Compare results assert (stk_isequal_tolabs (hv1, hv2, eps)); end end end 35 tests, 35 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_paretofind.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/pareto/stk_paretofind.m ***** shared x, ndpos, drank x = [ ... 0 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 1)); ***** assert (isequal (drank, [0; 1])); ***** shared x, ndpos, drank x = [ ... 3 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 2)); ***** assert (isequal (drank, [1; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3; ... -1 4; ... 2 2 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0; 1; 2])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_isdominated.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/pareto/stk_isdominated.m ***** test A = [1 3 2]; B = [0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 0); assert (dpos == 0); ***** test A = [1 3 2]; B = [0 0 0; 0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 2); ***** test A = [1 3 2; 1 0 1; -1 0 0; 1 3 2]; B = [1 0 0; 0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isequal (isdom, logical ([1; 1; 0; 1]))); assert (isequal (dpos, [3; 3; 0; 3])); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/design/stk_phipcrit.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/design/stk_phipcrit.m ***** shared x x = [0, 0.2, 0.4, 0.6, 0.8, 1.0; 0, 0.6, 0.8, 1.0, 0.2, 0.4]'; ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 10), 3.946317664423303, 1e-15)) ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 50), 3.614077252813102, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 100), 3.574589859827413, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 1e9), 1 / stk_mindist (x), 1e-8)); ***** assert (isequal (stk_phipcrit (ones (2)), Inf)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/design/stk_maxabscorr.m] >>>>> /build/reproducible-path/octave-stk-2.8.1/inst/misc/design/stk_maxabscorr.m ***** assert (stk_isequal_tolabs (0.0, ... % Test on an OLHS(5) stk_maxabscorr ([0.4 0.8 0 -0.4 -0.8; -0.8 0.4 0 0.8 -0.4]'))); 1 test, 1 passed, 0 known failure, 0 skipped Checking C++ files ... Done running the unit tests. Summary: 1558 tests, 1558 passed, 0 known failures, 0 skipped dh_installdocs -O--buildsystem=octave dh_installchangelogs -O--buildsystem=octave dh_octave_changelogs -O--buildsystem=octave dh_octave_examples -O--buildsystem=octave dh_installsystemduser -O--buildsystem=octave dh_lintian -O--buildsystem=octave dh_perl -O--buildsystem=octave dh_link -O--buildsystem=octave dh_strip_nondeterminism -O--buildsystem=octave dh_compress -O--buildsystem=octave dh_fixperms -O--buildsystem=octave dh_missing -O--buildsystem=octave dh_dwz -a -O--buildsystem=octave dh_strip -a -O--buildsystem=octave dh_makeshlibs -a -O--buildsystem=octave dh_shlibdeps -a -O--buildsystem=octave dh_octave_substvar -O--buildsystem=octave dh_installdeb -O--buildsystem=octave dh_gencontrol -O--buildsystem=octave dpkg-gencontrol: warning: package octave-stk: substitution variable ${octave:Upstream-Description} unused, but is defined dh_md5sums -O--buildsystem=octave dh_builddeb -O--buildsystem=octave dpkg-deb: building package 'octave-stk' in '../octave-stk_2.8.1-1_amd64.deb'. dpkg-deb: building package 'octave-stk-dbgsym' in '../octave-stk-dbgsym_2.8.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../octave-stk_2.8.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../octave-stk_2.8.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/753448/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/753448/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/753448 and its subdirectories I: Current time: Fri Jun 20 06:26:18 +14 2025 I: pbuilder-time-stamp: 1750350378