I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 10 11:31:25 +14 2025 I: pbuilder-time-stamp: 1749504685 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ncbi-vdb_3.0.2+dfsg-2.dsc] I: copying [./ncbi-vdb_3.0.2+dfsg.orig.tar.xz] I: copying [./ncbi-vdb_3.0.2+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 20 22:43:43 2023 gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ncbi-vdb_3.0.2+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ncbi-vdb in ncbi-vdb-3.0.2+dfsg dpkg-source: info: unpacking ncbi-vdb_3.0.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ncbi-vdb_3.0.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying i386-uint64_msbit.patch dpkg-source: info: applying zstd.patch dpkg-source: info: applying fix_cmake.patch dpkg-source: info: applying soversion.patch dpkg-source: info: applying libsam-extract_shared.patch dpkg-source: info: applying detect_BITS.patch dpkg-source: info: applying fix_x32.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 9 21:31 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=1df7d5e253d74b0da32bc11bf5b2a9b1 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1533399 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rYqgQYLy/pbuilderrc_5i8u --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rYqgQYLy/b2 --logfile b2/build.log ncbi-vdb_3.0.2+dfsg-2.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs (>= 0.104), cmake, libbz2-dev, libxml2-dev, libmagic-dev, libmbedtls-dev, zlib1g-dev, libzstd-dev, flex, bison, python3, doxygen, graphviz, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.104); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on libmagic-dev; however: Package libmagic-dev is not installed. pbuilder-satisfydepends-dummy depends on libmbedtls-dev; however: Package libmbedtls-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} icu-devtools{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libarchive13t64{a} libavif16{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu-dev{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} libldap-2.5-0{a} liblerc4{a} libllvm16t64{a} libltdl7{a} libmagic-dev{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls-dev{a} libmbedtls14t64{a} libmbedx509-1t64{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-override-perl{a} libsvtav1enc1d1{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libuv1t64{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl fonts-liberation2 krb5-locales libarchive-cpio-perl libfl-dev libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 133 MB of archives. After unpacking 552 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 flex amd64 2.6.4-8.2+b2 [426 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 bison amd64 2:3.8.2+dfsg-1+b1 [1175 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 42 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 57 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.106 [10.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libllvm16t64 amd64 1:16.0.6-26 [23.1 MB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libclang-cpp16t64 amd64 1:16.0.6-26 [11.5 MB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libclang1-16t64 amd64 1:16.0.6-26 [6591 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.4.1-1 [547 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0~git202401110.af6ac82-1 [169 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.0.4-2 [106 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 100 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libmagic-dev amd64 1:5.45-3 [118 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libmbedtls-dev amd64 2.28.8-1 [702 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.3+b3 [787 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 133 MB in 2s (63.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.2+b2_amd64.deb ... Unpacking flex (2.6.4-8.2+b2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../026-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../027-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../028-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../029-libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../030-libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-vdb_3.0.2+dfsg-2_source.changes dpkg-buildpackage: info: source package ncbi-vdb dpkg-buildpackage: info: source version 3.0.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' if [ -e ngs-sdk/Makefile.config.linux.x86_64 ] ; then \ dh_auto_clean ; \ fi rm -rf ncbi-vdb/x86_64-linux-gnu rm -rf obj-* rm -rf libs/cipher/cipher-1.7/cipher/__pycache__ rm -rf test/schema/actual rm -rf test/vdb/db/SparseCol* rm -rf test/vdb/db/VCursorCommit_BufferOverflow rm -f libs/ngs-jni/jni.h rm -f libs/ngs-jni/jni_md.h rm -f build/ld.linux.exe_cmd.sh rm -f debian/common-install-stamp rm -f interfaces/cc/gcc/aarch64 rm -f test/cloud/cloud-kfg/.aws/c* rm -f test/kdb/root/sra/SRR600096.sra.cache rm -f test/kdb/user-settings.mkfg rm -f test/vdb/kfg/*/user-settings.mkfg rm -f test/vfs/caching-kfg/unix/user-settings.mkfg rm -f test/vfs/tmp.perm-file.tmp rm -f test/vfs/user-settings.mkfg rm -f test/vxf/local_config/user-settings.mkfg make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' make[1]: 'override_dh_auto_configure-indep' is up to date. make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' dh_auto_configure -O--buildsystem=cmake -Nncbi-vdb-data cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at build/env.cmake:34 (cmake_policy): The OLD behavior for policy CMP0115 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. Call Stack (most recent call first): CMakeLists.txt:78 (include) VERSION=3.0.2 -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void * -- Check size of void * - done -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") -- Found BISON: /usr/bin/bison (found suitable version "3.8.2", minimum required is "3") -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Looking for C++ include mbedtls/md.h -- Looking for C++ include mbedtls/md.h - found -- Performing Test HAVE_MBEDTLS_F -- Performing Test HAVE_MBEDTLS_F - Success RUN_SANITIZER_TESTS: OFF -- Looking for gnu/libc-version.h -- Looking for gnu/libc-version.h - found -- Performing Test HAVE_GNU_GET_LIBC_VERSION_F -- Performing Test HAVE_GNU_GET_LIBC_VERSION_F - Success Using mbedtls installed in the system -- Configuring done (1.7s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' ln -s arm64 interfaces/cc/gcc/aarch64 dh_auto_build --no-parallel -- NO_VDB3=1 cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" NO_VDB3=1 VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ncbi-vdb-3.0.2+dfsg 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst/CMakeFiles/ktst.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/ktst/CMakeFiles/ktst.dir/build.make libs/ktst/CMakeFiles/ktst.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o -MF CMakeFiles/ktst.dir/testenv.cpp.o.d -o CMakeFiles/ktst.dir/testenv.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/ktst/testenv.cpp [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testcase.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/ktst/testcase.cpp [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o -MF CMakeFiles/ktst.dir/testrunner.cpp.o.d -o CMakeFiles/ktst.dir/testrunner.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/ktst/testrunner.cpp [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o -MF CMakeFiles/ktst.dir/unix/systestenv.cpp.o.d -o CMakeFiles/ktst.dir/unix/systestenv.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/ktst/unix/systestenv.cpp [ 0%] Linking CXX static library ../../lib/libktst.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst && /usr/bin/cmake -P CMakeFiles/ktst.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ktst && /usr/bin/cmake -E cmake_link_script CMakeFiles/ktst.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libktst.a CMakeFiles/ktst.dir/testenv.cpp.o CMakeFiles/ktst.dir/testcase.cpp.o CMakeFiles/ktst.dir/testrunner.cpp.o CMakeFiles/ktst.dir/unix/systestenv.cpp.o /usr/bin/ranlib ../../lib/libktst.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && rm -f libktst.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && mv libktst.a libktst.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libktst.a.3.0.2 libktst.a.3 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libktst.a.3 libktst.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libktst.a libktst-static.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 0%] Built target ktst make -f libs/align/CMakeFiles/ncbi-bam.dir/build.make libs/align/CMakeFiles/ncbi-bam.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align/CMakeFiles/ncbi-bam.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/align/CMakeFiles/ncbi-bam.dir/build.make libs/align/CMakeFiles/ncbi-bam.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 0%] Building C object libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o -MF CMakeFiles/ncbi-bam.dir/bam.c.o.d -o CMakeFiles/ncbi-bam.dir/bam.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c: In function 'BGZFileWalkBlocksND': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:298:9: warning: variable 'zr' set but not used [-Wunused-but-set-variable] 298 | int zr; | ^~ In function 'getFlags', inlined from 'BAMValidate3' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4821:28, inlined from 'BAMValidate2' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4959:42: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:808:26: warning: 'algn.data' may be used uninitialized [-Wmaybe-uninitialized] 808 | return LE2HUI16(cself->data->cooked.flags); | ~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c: In function 'BAMValidate2': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4953:42: note: 'algn' declared here 4953 | BAMAlignment algn; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c: In function 'BAMValidateIndex': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4674:16: warning: 'stats' may be used uninitialized [-Wmaybe-uninitialized] 4674 | return callback(callbackContext, 0, &stats); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4674:16: note: by argument 3 of type 'const BAMValidateStats *' to 'rc_t(void *, rc_t, const BAMValidateStats *)' {aka 'unsigned int(void *, unsigned int, const BAMValidateStats *)'} /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4664:22: note: 'stats' declared here 4664 | BAMValidateStats stats; | ^~~~~ In function 'getRefSeqId', inlined from 'BAMValidateIndex' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4780:50: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:784:25: warning: 'algn.data' may be used uninitialized [-Wmaybe-uninitialized] 784 | return LE2HI32(cself->data->cooked.rID); | ~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c: In function 'BAMValidateIndex': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/bam.c:4747:34: note: 'algn' declared here 4747 | BAMAlignment algn; | ^~~~ [ 1%] Linking C static library ../../ilib/libncbi-bam.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -P CMakeFiles/ncbi-bam.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-bam.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libncbi-bam.a "CMakeFiles/ncbi-bam.dir/bam.c.o" /usr/bin/ranlib ../../ilib/libncbi-bam.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 1%] Built target ncbi-bam make -f libs/align/CMakeFiles/align-writer.dir/build.make libs/align/CMakeFiles/align-writer.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align/CMakeFiles/align-writer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/align/CMakeFiles/align-writer.dir/build.make libs/align/CMakeFiles/align-writer.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o -MF CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o.d -o CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/dna-reverse-cmpl.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o -MF CMakeFiles/align-writer.dir/reader-cmn.c.o.d -o CMakeFiles/align-writer.dir/reader-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reader-cmn.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o -MF CMakeFiles/align-writer.dir/reference-cmn.c.o.d -o CMakeFiles/align-writer.dir/reference-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reference-cmn.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o -MF CMakeFiles/align-writer.dir/reader-refseq.c.o.d -o CMakeFiles/align-writer.dir/reader-refseq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reader-refseq.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o -MF CMakeFiles/align-writer.dir/reader-wgs.c.o.d -o CMakeFiles/align-writer.dir/reader-wgs.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reader-wgs.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o -MF CMakeFiles/align-writer.dir/refseq-mgr.c.o.d -o CMakeFiles/align-writer.dir/refseq-mgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/refseq-mgr.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o -MF CMakeFiles/align-writer.dir/writer-cmn.c.o.d -o CMakeFiles/align-writer.dir/writer-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-cmn.c [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-refseq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-refseq.c.o -MF CMakeFiles/align-writer.dir/writer-refseq.c.o.d -o CMakeFiles/align-writer.dir/writer-refseq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-refseq.c [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-alignment.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-alignment.c.o -MF CMakeFiles/align-writer.dir/writer-alignment.c.o.d -o CMakeFiles/align-writer.dir/writer-alignment.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-alignment.c [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-sequence.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-sequence.c.o -MF CMakeFiles/align-writer.dir/writer-sequence.c.o.d -o CMakeFiles/align-writer.dir/writer-sequence.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c: In function 'getVTable': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c:553:10: warning: unused variable 'rc' [-Wunused-variable] 553 | rc_t rc = TableWriter_GetVTable(self->base, &vtbl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c: In function 'getMetadata': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c:571:16: warning: unused variable 'rc' [-Wunused-variable] 571 | rc_t const rc = VTableOpenMetadataUpdate(vtbl, &md); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c: In function 'openNode': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c:578:16: warning: unused variable 'rc' [-Wunused-variable] 578 | rc_t const rc = KMetadataOpenNodeUpdate(md, &node, "%s", nodeName); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c: In function 'writeStatsMetadata': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c:585:16: warning: unused variable 'rc' [-Wunused-variable] 585 | rc_t const rc = TableWriterSeq_WriteStatistics(self, node); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c: In function 'writeInt64Metadata': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c:594:16: warning: unused variable 'rc2' [-Wunused-variable] 594 | rc_t const rc2 = KMDataNodeWriteB64(sub, pValue); | ^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-sequence.c:593:16: warning: unused variable 'rc1' [-Wunused-variable] 593 | rc_t const rc1 = KMDataNodeOpenNodeUpdate(pnode, &sub, "%s", nodeName); | ^~~ [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o -MF CMakeFiles/align-writer.dir/writer-ref.c.o.d -o CMakeFiles/align-writer.dir/writer-ref.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-ref.c [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o -MF CMakeFiles/align-writer.dir/writer-reference.c.o.d -o CMakeFiles/align-writer.dir/writer-reference.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c: In function 'ReferenceSeq_Dump': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:1174:21: warning: unused variable 'key' [-Wunused-variable] 1174 | char const *key = rs->used[j]; | ^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c: In function 'ReferenceMgr_OpenSeq': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:1592:24: warning: unused variable 'rc' [-Wunused-variable] 1592 | rc_t const rc = RefSeqMgr_GetSeq(self->rmgr, &dummy, key, (unsigned)string_size(key)); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c: In function 'ReferenceMgr_ReCover': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:2051:30: warning: variable 'num_elem_copied' set but not used [-Wunused-but-set-variable] 2051 | uint64_t num_elem_copied = 0; | ^~~~~~~~~~~~~~~ In function 'ReferenceMgr_ProcessConf', inlined from 'ReferenceMgr_Conf' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:700:26, inlined from 'ReferenceMgr_Make' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:1659:26: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:631:5: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 631 | ksort(data, buf.elem_count, sizeof(data[0]), config_cmp, Data); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c: In function 'ReferenceMgr_Make': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/writer-reference.c:562:8: note: 'data' was declared here 562 | } *data, tmp; | ^~~~ [ 2%] Linking C static library ../../ilib/libalign-writer.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -P CMakeFiles/align-writer.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-writer.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libalign-writer.a "CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o" "CMakeFiles/align-writer.dir/reader-cmn.c.o" "CMakeFiles/align-writer.dir/reference-cmn.c.o" "CMakeFiles/align-writer.dir/reader-refseq.c.o" "CMakeFiles/align-writer.dir/reader-wgs.c.o" "CMakeFiles/align-writer.dir/refseq-mgr.c.o" "CMakeFiles/align-writer.dir/writer-cmn.c.o" "CMakeFiles/align-writer.dir/writer-refseq.c.o" "CMakeFiles/align-writer.dir/writer-alignment.c.o" "CMakeFiles/align-writer.dir/writer-sequence.c.o" "CMakeFiles/align-writer.dir/writer-ref.c.o" "CMakeFiles/align-writer.dir/writer-reference.c.o" /usr/bin/ranlib ../../ilib/libalign-writer.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 2%] Built target align-writer make -f libs/align/CMakeFiles/align-access.dir/build.make libs/align/CMakeFiles/align-access.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align/CMakeFiles/align-access.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/align/CMakeFiles/align-access.dir/build.make libs/align/CMakeFiles/align-access.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 2%] Building C object libs/align/CMakeFiles/align-access.dir/align-access.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-access.dir/align-access.c.o -MF CMakeFiles/align-access.dir/align-access.c.o.d -o CMakeFiles/align-access.dir/align-access.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/align-access.c [ 2%] Linking C static library ../../ilib/libalign-access.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -P CMakeFiles/align-access.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-access.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libalign-access.a "CMakeFiles/align-access.dir/align-access.c.o" /usr/bin/ranlib ../../ilib/libalign-access.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 2%] Built target align-access make -f libs/align/CMakeFiles/sam-extract.dir/build.make libs/align/CMakeFiles/sam-extract.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align/CMakeFiles/sam-extract.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/align/CMakeFiles/sam-extract.dir/build.make libs/align/CMakeFiles/sam-extract.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o -MF CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o.d -o CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/zz_samextract-grammar.c [ 3%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o -MF CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o.d -o CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/zz_samextract-lex.c [ 3%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-lib.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-lib.cpp.o -MF CMakeFiles/sam-extract.dir/samextract-lib.cpp.o.d -o CMakeFiles/sam-extract.dir/samextract-lib.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-lib.cpp [ 3%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-bam.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-bam.cpp.o -MF CMakeFiles/sam-extract.dir/samextract-bam.cpp.o.d -o CMakeFiles/sam-extract.dir/samextract-bam.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/align/samextract-lib.h:32, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract.h:29, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp:27: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp: In member function 'bool BGZFview::getnextBGZF(KQueue*)': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/rc.h:112:5: warning: statement has no effect [-Wunused-value] 112 | ( rc_t ) ( \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 | SET_RC_FILE_FUNC_LINE ( \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 | CTX ( mod, targ, ctx ) | /* 18 bits */ \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 | ( ( rc_t ) ( obj ) << 6 ) | /* 8 bits */ \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 | ( ( rc_t ) ( state ) ) ) ) /* 6 bits */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp:131:21: note: in expansion of macro 'RC' 131 | RC(rcAlign, rcFile, rcConstructing, rcNoObj, | ^~ [ 3%] Building C object libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o -MF CMakeFiles/sam-extract.dir/samextract-pool.c.o.d -o CMakeFiles/sam-extract.dir/samextract-pool.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c: In function 'morecore': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c:49:5: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 49 | VectorAppend(&allocs, NULL, cur_block); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/align/samextract-lib.h:34, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract.h:29, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.h:29, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c:27: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/vector.h:401:21: note: by argument 3 of type 'const void *' to 'VectorAppend' declared here 401 | KLIB_EXTERN rc_t CC VectorAppend ( Vector *self, uint32_t *idx, const void *item ); | ^~~~~~~~~~~~ [ 3%] Linking CXX static library ../../lib/libsam-extract.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -P CMakeFiles/sam-extract.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-extract.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libsam-extract.a "CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o" "CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o" "CMakeFiles/sam-extract.dir/samextract-lib.cpp.o" "CMakeFiles/sam-extract.dir/samextract-bam.cpp.o" "CMakeFiles/sam-extract.dir/samextract-pool.c.o" /usr/bin/ranlib ../../lib/libsam-extract.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && rm -f libsam-extract.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && mv libsam-extract.a libsam-extract.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libsam-extract.a.3.0.2 libsam-extract.a.3 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libsam-extract.a.3 libsam-extract.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libsam-extract.a libsam-extract-static.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target sam-extract make -f libs/align/CMakeFiles/sam-extract-shared.dir/build.make libs/align/CMakeFiles/sam-extract-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align/CMakeFiles/sam-extract-shared.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/align/CMakeFiles/sam-extract-shared.dir/build.make libs/align/CMakeFiles/sam-extract-shared.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 3%] Building C object libs/align/CMakeFiles/sam-extract-shared.dir/zz_samextract-grammar.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dsam_extract_shared_EXPORTS -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract-shared.dir/zz_samextract-grammar.c.o -MF CMakeFiles/sam-extract-shared.dir/zz_samextract-grammar.c.o.d -o CMakeFiles/sam-extract-shared.dir/zz_samextract-grammar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/zz_samextract-grammar.c [ 4%] Building C object libs/align/CMakeFiles/sam-extract-shared.dir/zz_samextract-lex.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dsam_extract_shared_EXPORTS -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract-shared.dir/zz_samextract-lex.c.o -MF CMakeFiles/sam-extract-shared.dir/zz_samextract-lex.c.o.d -o CMakeFiles/sam-extract-shared.dir/zz_samextract-lex.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/zz_samextract-lex.c [ 4%] Building CXX object libs/align/CMakeFiles/sam-extract-shared.dir/samextract-lib.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dsam_extract_shared_EXPORTS -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract-shared.dir/samextract-lib.cpp.o -MF CMakeFiles/sam-extract-shared.dir/samextract-lib.cpp.o.d -o CMakeFiles/sam-extract-shared.dir/samextract-lib.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-lib.cpp [ 4%] Building CXX object libs/align/CMakeFiles/sam-extract-shared.dir/samextract-bam.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dsam_extract_shared_EXPORTS -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract-shared.dir/samextract-bam.cpp.o -MF CMakeFiles/sam-extract-shared.dir/samextract-bam.cpp.o.d -o CMakeFiles/sam-extract-shared.dir/samextract-bam.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/align/samextract-lib.h:32, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract.h:29, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp:27: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp: In member function 'bool BGZFview::getnextBGZF(KQueue*)': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/rc.h:112:5: warning: statement has no effect [-Wunused-value] 112 | ( rc_t ) ( \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 | SET_RC_FILE_FUNC_LINE ( \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 | CTX ( mod, targ, ctx ) | /* 18 bits */ \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 | ( ( rc_t ) ( obj ) << 6 ) | /* 8 bits */ \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 | ( ( rc_t ) ( state ) ) ) ) /* 6 bits */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-bam.cpp:131:21: note: in expansion of macro 'RC' 131 | RC(rcAlign, rcFile, rcConstructing, rcNoObj, | ^~ [ 4%] Building C object libs/align/CMakeFiles/sam-extract-shared.dir/samextract-pool.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dsam_extract_shared_EXPORTS -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/sam-extract-shared.dir/samextract-pool.c.o -MF CMakeFiles/sam-extract-shared.dir/samextract-pool.c.o.d -o CMakeFiles/sam-extract-shared.dir/samextract-pool.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c: In function 'morecore': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c:49:5: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 49 | VectorAppend(&allocs, NULL, cur_block); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/align/samextract-lib.h:34, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract.h:29, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.h:29, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/samextract-pool.c:27: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/vector.h:401:21: note: by argument 3 of type 'const void *' to 'VectorAppend' declared here 401 | KLIB_EXTERN rc_t CC VectorAppend ( Vector *self, uint32_t *idx, const void *item ); | ^~~~~~~~~~~~ [ 4%] Linking CXX shared library ../../lib/libsam-extract.so cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-extract-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libsam-extract.so.3 -o ../../lib/libsam-extract.so.3.0.2 "CMakeFiles/sam-extract-shared.dir/zz_samextract-grammar.c.o" "CMakeFiles/sam-extract-shared.dir/zz_samextract-lex.c.o" "CMakeFiles/sam-extract-shared.dir/samextract-lib.cpp.o" "CMakeFiles/sam-extract-shared.dir/samextract-bam.cpp.o" "CMakeFiles/sam-extract-shared.dir/samextract-pool.c.o" cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_symlink_library ../../lib/libsam-extract.so.3.0.2 ../../lib/libsam-extract.so.3 ../../lib/libsam-extract.so make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 4%] Built target sam-extract-shared make -f libs/align/CMakeFiles/align-reader.dir/build.make libs/align/CMakeFiles/align-reader.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align/CMakeFiles/align-reader.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/align/CMakeFiles/align-reader.dir/build.make libs/align/CMakeFiles/align-reader.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o -MF CMakeFiles/align-reader.dir/align_mgr.c.o.d -o CMakeFiles/align-reader.dir/align_mgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/align_mgr.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o -MF CMakeFiles/align-reader.dir/al_iterator.c.o.d -o CMakeFiles/align-reader.dir/al_iterator.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/al_iterator.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o -MF CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o.d -o CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/unsupported_pileup_estimator.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o -MF CMakeFiles/align-reader.dir/ref_iterator.c.o.d -o CMakeFiles/align-reader.dir/ref_iterator.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/ref_iterator.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o -MF CMakeFiles/align-reader.dir/pl_iterator.c.o.d -o CMakeFiles/align-reader.dir/pl_iterator.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/pl_iterator.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o -MF CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o.d -o CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/dna-reverse-cmpl.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o -MF CMakeFiles/align-reader.dir/reference-cmn.c.o.d -o CMakeFiles/align-reader.dir/reference-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reference-cmn.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o -MF CMakeFiles/align-reader.dir/reader-cmn.c.o.d -o CMakeFiles/align-reader.dir/reader-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reader-cmn.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o -MF CMakeFiles/align-reader.dir/reader-refseq.c.o.d -o CMakeFiles/align-reader.dir/reader-refseq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reader-refseq.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o -MF CMakeFiles/align-reader.dir/reader-wgs.c.o.d -o CMakeFiles/align-reader.dir/reader-wgs.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reader-wgs.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/reference.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/reference.c.o -MF CMakeFiles/align-reader.dir/reference.c.o.d -o CMakeFiles/align-reader.dir/reference.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reference.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reference.c: In function 'ReferenceList_MakeCursor': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/reference.c:306:22: warning: unused variable 'rctmp' [-Wunused-variable] 306 | rc_t rctmp = TableReader_OpenIndex( tmp, "i_name", &iname ); | ^~~~~ [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o -MF CMakeFiles/align-reader.dir/refseq-mgr.c.o.d -o CMakeFiles/align-reader.dir/refseq-mgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/refseq-mgr.c [ 5%] Building C object libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o -MF CMakeFiles/align-reader.dir/quality-quantizer.c.o.d -o CMakeFiles/align-reader.dir/quality-quantizer.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/align/quality-quantizer.c [ 6%] Linking C static library ../../ilib/libalign-reader.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -P CMakeFiles/align-reader.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-reader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libalign-reader.a "CMakeFiles/align-reader.dir/align_mgr.c.o" "CMakeFiles/align-reader.dir/al_iterator.c.o" "CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o" "CMakeFiles/align-reader.dir/ref_iterator.c.o" "CMakeFiles/align-reader.dir/pl_iterator.c.o" "CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o" "CMakeFiles/align-reader.dir/reference-cmn.c.o" "CMakeFiles/align-reader.dir/reader-cmn.c.o" "CMakeFiles/align-reader.dir/reader-refseq.c.o" "CMakeFiles/align-reader.dir/reader-wgs.c.o" "CMakeFiles/align-reader.dir/reference.c.o" "CMakeFiles/align-reader.dir/refseq-mgr.c.o" "CMakeFiles/align-reader.dir/quality-quantizer.c.o" /usr/bin/ranlib ../../ilib/libalign-reader.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 6%] Built target align-reader make -f libs/axf/CMakeFiles/axf.dir/build.make libs/axf/CMakeFiles/axf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf/CMakeFiles/axf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/axf/CMakeFiles/axf.dir/build.make libs/axf/CMakeFiles/axf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o -MF CMakeFiles/axf.dir/ref-tbl-sub-select.c.o.d -o CMakeFiles/axf.dir/ref-tbl-sub-select.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-tbl-sub-select.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o -MF CMakeFiles/axf.dir/ref-restore-read.c.o.d -o CMakeFiles/axf.dir/ref-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-restore-read.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o -MF CMakeFiles/axf.dir/align-restore-read.c.o.d -o CMakeFiles/axf.dir/align-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-restore-read.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o -MF CMakeFiles/axf.dir/raw-restore-read.c.o.d -o CMakeFiles/axf.dir/raw-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-read.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-read.c: In function 'raw_restore_read_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-read.c:75:25: warning: unused variable 'strand_len' [-Wunused-variable] 75 | const uint32_t strand_len = (uint32_t)argv[ 1 ].u.data.elem_count; | ^~~~~~~~~~ [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o -MF CMakeFiles/axf.dir/raw-restore-qual.c.o.d -o CMakeFiles/axf.dir/raw-restore-qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-qual.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-qual.c: In function 'raw_restore_read_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-qual.c:53:25: warning: unused variable 'strand_len' [-Wunused-variable] 53 | const uint32_t strand_len = (uint32_t)argv[ 1 ].u.data.elem_count; | ^~~~~~~~~~ [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o -MF CMakeFiles/axf.dir/seq-restore-read.c.o.d -o CMakeFiles/axf.dir/seq-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/seq-restore-read.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-linkage-group.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/seq-construct-read.c.o -MF CMakeFiles/axf.dir/seq-construct-read.c.o.d -o CMakeFiles/axf.dir/seq-construct-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/seq-construct-read.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/cigar.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/cigar.c.o -MF CMakeFiles/axf.dir/cigar.c.o.d -o CMakeFiles/axf.dir/cigar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c: In function 'generate_has_mismatch_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c:986:14: warning: unused variable 'hro_len' [-Wunused-variable] 986 | uint32_t hro_len = ( uint32_t )argv[ 2 ].u.data.elem_count; | ^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c: In function 'generate_mismatch_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c:1061:14: warning: unused variable 'hro_len' [-Wunused-variable] 1061 | uint32_t hro_len = ( uint32_t )argv[ 2 ].u.data.elem_count; | ^~~~~~~ [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o -MF CMakeFiles/axf.dir/project_read_from_sequence.c.o.d -o CMakeFiles/axf.dir/project_read_from_sequence.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/project_read_from_sequence.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/not-my-row.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/not-my-row.c.o -MF CMakeFiles/axf.dir/not-my-row.c.o.d -o CMakeFiles/axf.dir/not-my-row.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/not-my-row.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/template-len.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/template-len.c.o -MF CMakeFiles/axf.dir/template-len.c.o.d -o CMakeFiles/axf.dir/template-len.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/template-len.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o -MF CMakeFiles/axf.dir/get-sam-flags.c.o.d -o CMakeFiles/axf.dir/get-sam-flags.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/get-sam-flags.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o -MF CMakeFiles/axf.dir/align-ref-pos.c.o.d -o CMakeFiles/axf.dir/align-ref-pos.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-ref-pos.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o -MF CMakeFiles/axf.dir/align-ref-name.c.o.d -o CMakeFiles/axf.dir/align-ref-name.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-ref-name.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-seq-id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-seq-id.c.o -MF CMakeFiles/axf.dir/align-ref-seq-id.c.o.d -o CMakeFiles/axf.dir/align-ref-seq-id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-ref-seq-id.c [ 8%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o -MF CMakeFiles/axf.dir/align-local_ref_id.c.o.d -o CMakeFiles/axf.dir/align-local_ref_id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-local_ref_id.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o -MF CMakeFiles/axf.dir/align-local_ref_start.c.o.d -o CMakeFiles/axf.dir/align-local_ref_start.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-local_ref_start.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/generate-mismatch-qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/generate-mismatch-qual.c.o -MF CMakeFiles/axf.dir/generate-mismatch-qual.c.o.d -o CMakeFiles/axf.dir/generate-mismatch-qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/generate-mismatch-qual.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o -MF CMakeFiles/axf.dir/mismatch-restore-qual.c.o.d -o CMakeFiles/axf.dir/mismatch-restore-qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c: In function 'mismatch_restore_qual_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c:51:20: warning: unused variable 'nqual' [-Wunused-variable] 51 | unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; | ^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c: In function 'decompress_quality_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c:97:20: warning: unused variable 'nqual' [-Wunused-variable] 97 | unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; | ^~~~~ [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o -MF CMakeFiles/axf.dir/ref-preserve_qual.c.o.d -o CMakeFiles/axf.dir/ref-preserve_qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-preserve_qual.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o -MF CMakeFiles/axf.dir/ref-tbl.c.o.d -o CMakeFiles/axf.dir/ref-tbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-tbl.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o -MF CMakeFiles/axf.dir/make-cmp-read_desc.c.o.d -o CMakeFiles/axf.dir/make-cmp-read_desc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/make-cmp-read_desc.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o -MF CMakeFiles/axf.dir/get_mate_align_ids.c.o.d -o CMakeFiles/axf.dir/get_mate_align_ids.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/get_mate_align_ids.c [ 9%] Building C object libs/axf/CMakeFiles/axf.dir/range-list.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/range-list.c.o -MF CMakeFiles/axf.dir/range-list.c.o.d -o CMakeFiles/axf.dir/range-list.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/range-list.c [ 10%] Building C object libs/axf/CMakeFiles/axf.dir/refseq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/refseq.c.o -MF CMakeFiles/axf.dir/refseq.c.o.d -o CMakeFiles/axf.dir/refseq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c In function 'runLoadThread', inlined from 'run_load_thread' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:554:12: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:342:30: warning: 'read.length' may be used uninitialized [-Wmaybe-uninitialized] 342 | if (!done && rc == 0 && read.length <= async->max_seq_len && position + seqLen <= self->length) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c: In function 'run_load_thread': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:313:22: note: 'read.length' was declared here 313 | ReadStringResult read; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c: In function 'readNormalIncomplete': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:275:35: warning: 'read.length' may be used uninitialized [-Wmaybe-uninitialized] 275 | for (i = 0; i < read.length; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:264:34: note: 'read.length' was declared here 264 | ReadStringResult read; | ^~~~ [ 10%] Building C object libs/axf/CMakeFiles/axf.dir/wgs.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/wgs.c.o -MF CMakeFiles/axf.dir/wgs.c.o.d -o CMakeFiles/axf.dir/wgs.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/wgs.c [ 10%] Building C object libs/axf/CMakeFiles/axf.dir/restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/axf.dir/restore-read.c.o -MF CMakeFiles/axf.dir/restore-read.c.o.d -o CMakeFiles/axf.dir/restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'getVFSManager': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:58:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 58 | rc_t rc = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedReader': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:268:16: warning: unused variable 'rc' [-Wunused-variable] 268 | rc_t const rc = KRWLockAcquireShared(self->rwl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedReaderDone': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:274:16: warning: unused variable 'rc' [-Wunused-variable] 274 | rc_t const rc = KRWLockUnlock(self->rwl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedWriter': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:282:20: warning: unused variable 'rc' [-Wunused-variable] 282 | rc_t const rc = KRWLockAcquireExcl(self->rwl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedWriterDone': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:290:20: warning: unused variable 'rc' [-Wunused-variable] 290 | rc_t const rc = KRWLockUnlock(self->rwl); | ^~ [ 10%] Linking C static library ../../ilib/libaxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cmake -P CMakeFiles/axf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cmake -E cmake_link_script CMakeFiles/axf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libaxf.a "CMakeFiles/axf.dir/ref-tbl-sub-select.c.o" "CMakeFiles/axf.dir/ref-restore-read.c.o" "CMakeFiles/axf.dir/align-restore-read.c.o" "CMakeFiles/axf.dir/raw-restore-read.c.o" "CMakeFiles/axf.dir/raw-restore-qual.c.o" "CMakeFiles/axf.dir/seq-restore-read.c.o" "CMakeFiles/axf.dir/seq-restore-linkage-group.c.o" "CMakeFiles/axf.dir/seq-construct-read.c.o" CMakeFiles/axf.dir/cigar.c.o CMakeFiles/axf.dir/project_read_from_sequence.c.o "CMakeFiles/axf.dir/not-my-row.c.o" "CMakeFiles/axf.dir/template-len.c.o" "CMakeFiles/axf.dir/get-sam-flags.c.o" "CMakeFiles/axf.dir/align-ref-pos.c.o" "CMakeFiles/axf.dir/align-ref-name.c.o" "CMakeFiles/axf.dir/align-ref-seq-id.c.o" "CMakeFiles/axf.dir/align-local_ref_id.c.o" "CMakeFiles/axf.dir/align-local_ref_start.c.o" "CMakeFiles/axf.dir/generate-mismatch-qual.c.o" "CMakeFiles/axf.dir/mismatch-restore-qual.c.o" "CMakeFiles/axf.dir/ref-preserve_qual.c.o" "CMakeFiles/axf.dir/ref-tbl.c.o" "CMakeFiles/axf.dir/make-cmp-read_desc.c.o" CMakeFiles/axf.dir/get_mate_align_ids.c.o "CMakeFiles/axf.dir/range-list.c.o" CMakeFiles/axf.dir/refseq.c.o CMakeFiles/axf.dir/wgs.c.o "CMakeFiles/axf.dir/restore-read.c.o" /usr/bin/ranlib ../../ilib/libaxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 10%] Built target axf make -f libs/axf/CMakeFiles/waxf.dir/build.make libs/axf/CMakeFiles/waxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf/CMakeFiles/waxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/axf/CMakeFiles/waxf.dir/build.make libs/axf/CMakeFiles/waxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o -MF CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o.d -o CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-tbl-sub-select.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o -MF CMakeFiles/waxf.dir/ref-restore-read.c.o.d -o CMakeFiles/waxf.dir/ref-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-restore-read.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o -MF CMakeFiles/waxf.dir/align-restore-read.c.o.d -o CMakeFiles/waxf.dir/align-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-restore-read.c [ 11%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o -MF CMakeFiles/waxf.dir/raw-restore-read.c.o.d -o CMakeFiles/waxf.dir/raw-restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-read.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-read.c: In function 'raw_restore_read_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-read.c:75:25: warning: unused variable 'strand_len' [-Wunused-variable] 75 | const uint32_t strand_len = (uint32_t)argv[ 1 ].u.data.elem_count; | ^~~~~~~~~~ [ 11%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o -MF CMakeFiles/waxf.dir/raw-restore-qual.c.o.d -o CMakeFiles/waxf.dir/raw-restore-qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-qual.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-qual.c: In function 'raw_restore_read_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/raw-restore-qual.c:53:25: warning: unused variable 'strand_len' [-Wunused-variable] 53 | const uint32_t strand_len = (uint32_t)argv[ 1 ].u.data.elem_count; | ^~~~~~~~~~ [ 11%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/seq-restore-linkage-group.c [ 11%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o -MF CMakeFiles/waxf.dir/seq-construct-read.c.o.d -o CMakeFiles/waxf.dir/seq-construct-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/seq-construct-read.c [ 11%] Building C object libs/axf/CMakeFiles/waxf.dir/cigar.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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[-Wunused-variable] 986 | uint32_t hro_len = ( uint32_t )argv[ 2 ].u.data.elem_count; | ^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c: In function 'generate_mismatch_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/cigar.c:1061:14: warning: unused variable 'hro_len' [-Wunused-variable] 1061 | uint32_t hro_len = ( uint32_t )argv[ 2 ].u.data.elem_count; | ^~~~~~~ [ 11%] Building C object libs/axf/CMakeFiles/waxf.dir/project_read_from_sequence.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/not-my-row.c.o -MF CMakeFiles/waxf.dir/not-my-row.c.o.d -o CMakeFiles/waxf.dir/not-my-row.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/not-my-row.c [ 12%] Building C object libs/axf/CMakeFiles/waxf.dir/template-len.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/get-sam-flags.c.o -MF CMakeFiles/waxf.dir/get-sam-flags.c.o.d -o CMakeFiles/waxf.dir/get-sam-flags.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/get-sam-flags.c [ 12%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o -MF CMakeFiles/waxf.dir/align-ref-pos.c.o.d -o CMakeFiles/waxf.dir/align-ref-pos.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-ref-pos.c [ 12%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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-DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-seq-id.c.o -MF CMakeFiles/waxf.dir/align-ref-seq-id.c.o.d -o CMakeFiles/waxf.dir/align-ref-seq-id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-ref-seq-id.c [ 12%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o -MF CMakeFiles/waxf.dir/align-local_ref_id.c.o.d -o CMakeFiles/waxf.dir/align-local_ref_id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/align-local_ref_id.c [ 12%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_start.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/generate-mismatch-qual.c.o -MF CMakeFiles/waxf.dir/generate-mismatch-qual.c.o.d -o CMakeFiles/waxf.dir/generate-mismatch-qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/generate-mismatch-qual.c [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o -MF CMakeFiles/waxf.dir/mismatch-restore-qual.c.o.d -o CMakeFiles/waxf.dir/mismatch-restore-qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c: In function 'mismatch_restore_qual_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c:51:20: warning: unused variable 'nqual' [-Wunused-variable] 51 | unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; | ^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c: In function 'decompress_quality_impl': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/mismatch-restore-qual.c:97:20: warning: unused variable 'nqual' [-Wunused-variable] 97 | unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; | ^~~~~ [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o -MF CMakeFiles/waxf.dir/ref-preserve_qual.c.o.d -o CMakeFiles/waxf.dir/ref-preserve_qual.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-preserve_qual.c [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o -MF CMakeFiles/waxf.dir/ref-tbl.c.o.d -o CMakeFiles/waxf.dir/ref-tbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/ref-tbl.c [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o -MF CMakeFiles/waxf.dir/make-cmp-read_desc.c.o.d -o CMakeFiles/waxf.dir/make-cmp-read_desc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/make-cmp-read_desc.c [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o -MF CMakeFiles/waxf.dir/get_mate_align_ids.c.o.d -o CMakeFiles/waxf.dir/get_mate_align_ids.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/get_mate_align_ids.c [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/range-list.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/range-list.c.o -MF CMakeFiles/waxf.dir/range-list.c.o.d -o CMakeFiles/waxf.dir/range-list.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/range-list.c [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/refseq.c.o -MF CMakeFiles/waxf.dir/refseq.c.o.d -o CMakeFiles/waxf.dir/refseq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c In function 'runLoadThread', inlined from 'run_load_thread' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:554:12: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:342:30: warning: 'read.length' may be used uninitialized [-Wmaybe-uninitialized] 342 | if (!done && rc == 0 && read.length <= async->max_seq_len && position + seqLen <= self->length) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c: In function 'run_load_thread': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:313:22: note: 'read.length' was declared here 313 | ReadStringResult read; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c: In function 'readNormalIncomplete': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:275:35: warning: 'read.length' may be used uninitialized [-Wmaybe-uninitialized] 275 | for (i = 0; i < read.length; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq.c:264:34: note: 'read.length' was declared here 264 | ReadStringResult read; | ^~~~ [ 13%] Building C object libs/axf/CMakeFiles/waxf.dir/wgs.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/wgs.c.o -MF CMakeFiles/waxf.dir/wgs.c.o.d -o CMakeFiles/waxf.dir/wgs.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/wgs.c [ 14%] Building C object libs/axf/CMakeFiles/waxf.dir/restore-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/restore-read.c.o -MF CMakeFiles/waxf.dir/restore-read.c.o.d -o CMakeFiles/waxf.dir/restore-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'getVFSManager': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:58:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 58 | rc_t rc = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedReader': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:268:16: warning: unused variable 'rc' [-Wunused-variable] 268 | rc_t const rc = KRWLockAcquireShared(self->rwl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedReaderDone': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:274:16: warning: unused variable 'rc' [-Wunused-variable] 274 | rc_t const rc = KRWLockUnlock(self->rwl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedWriter': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:282:20: warning: unused variable 'rc' [-Wunused-variable] 282 | rc_t const rc = KRWLockAcquireExcl(self->rwl); | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c: In function 'RestoreReadSharedWriterDone': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/restore-read.c:290:20: warning: unused variable 'rc' [-Wunused-variable] 290 | rc_t const rc = KRWLockUnlock(self->rwl); | ^~ [ 14%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o -MF CMakeFiles/waxf.dir/refseq-stats.c.o.d -o CMakeFiles/waxf.dir/refseq-stats.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/axf/refseq-stats.c [ 14%] Linking C static library ../../ilib/libwaxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cmake -P CMakeFiles/waxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/axf && /usr/bin/cmake -E cmake_link_script CMakeFiles/waxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwaxf.a "CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o" "CMakeFiles/waxf.dir/ref-restore-read.c.o" "CMakeFiles/waxf.dir/align-restore-read.c.o" "CMakeFiles/waxf.dir/raw-restore-read.c.o" "CMakeFiles/waxf.dir/raw-restore-qual.c.o" "CMakeFiles/waxf.dir/seq-restore-read.c.o" "CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o" "CMakeFiles/waxf.dir/seq-construct-read.c.o" CMakeFiles/waxf.dir/cigar.c.o CMakeFiles/waxf.dir/project_read_from_sequence.c.o "CMakeFiles/waxf.dir/not-my-row.c.o" "CMakeFiles/waxf.dir/template-len.c.o" "CMakeFiles/waxf.dir/get-sam-flags.c.o" "CMakeFiles/waxf.dir/align-ref-pos.c.o" "CMakeFiles/waxf.dir/align-ref-name.c.o" "CMakeFiles/waxf.dir/align-ref-seq-id.c.o" "CMakeFiles/waxf.dir/align-local_ref_id.c.o" "CMakeFiles/waxf.dir/align-local_ref_start.c.o" "CMakeFiles/waxf.dir/generate-mismatch-qual.c.o" "CMakeFiles/waxf.dir/mismatch-restore-qual.c.o" "CMakeFiles/waxf.dir/ref-preserve_qual.c.o" "CMakeFiles/waxf.dir/ref-tbl.c.o" "CMakeFiles/waxf.dir/make-cmp-read_desc.c.o" CMakeFiles/waxf.dir/get_mate_align_ids.c.o "CMakeFiles/waxf.dir/range-list.c.o" CMakeFiles/waxf.dir/refseq.c.o CMakeFiles/waxf.dir/wgs.c.o "CMakeFiles/waxf.dir/restore-read.c.o" "CMakeFiles/waxf.dir/refseq-stats.c.o" /usr/bin/ranlib ../../ilib/libwaxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 14%] Built target waxf make -f libs/blast/CMakeFiles/vdb-blast.dir/build.make libs/blast/CMakeFiles/vdb-blast.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast/CMakeFiles/vdb-blast.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/blast/CMakeFiles/vdb-blast.dir/build.make libs/blast/CMakeFiles/vdb-blast.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 14%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o -MF CMakeFiles/vdb-blast.dir/blast-mgr.c.o.d -o CMakeFiles/vdb-blast.dir/blast-mgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/blast-mgr.c [ 14%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o -MF CMakeFiles/vdb-blast.dir/reader.c.o.d -o CMakeFiles/vdb-blast.dir/reader.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c: In function 'VdbBlastStdaaReaderRelease': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:2160:5: warning: pointer 'self' used after 'free' [-Wuse-after-free] 2160 | memset(self, 0, sizeof *self); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:2159:5: note: call to 'free' here 2159 | free(self); | ^~~~~~~~~~ In file included from /usr/include/string.h:548, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfc/defs.h:37, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/defs.h:31, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/printf.h:35, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/blast-mgr.h:31, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:29: In function 'memset', inlined from 'VdbBlastStdaaReaderRelease' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:2160:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: pointer 'self' used after 'free' [-Wuse-after-free] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c: In function 'VdbBlastStdaaReaderRelease': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:2159:5: note: call to 'free' here 2159 | free(self); | ^~~~~~~~~~ In function 'memset', inlined from 'VdbBlastStdaaReaderRelease' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:2160:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:10: warning: pointer 'self' used after 'free' [-Wuse-after-free] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c: In function 'VdbBlastStdaaReaderRelease': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reader.c:2159:5: note: call to 'free' here 2159 | free(self); | ^~~~~~~~~~ [ 14%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o -MF CMakeFiles/vdb-blast.dir/reference.c.o.d -o CMakeFiles/vdb-blast.dir/reference.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/reference.c [ 14%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/run-set.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/run-set.c.o -MF CMakeFiles/vdb-blast.dir/run-set.c.o.d -o CMakeFiles/vdb-blast.dir/run-set.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/blast/run-set.c [ 14%] Linking C static library ../../ilib/libvdb-blast.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast && /usr/bin/cmake -P CMakeFiles/vdb-blast.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/blast && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-blast.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvdb-blast.a "CMakeFiles/vdb-blast.dir/blast-mgr.c.o" "CMakeFiles/vdb-blast.dir/reader.c.o" "CMakeFiles/vdb-blast.dir/reference.c.o" "CMakeFiles/vdb-blast.dir/run-set.c.o" /usr/bin/ranlib ../../ilib/libvdb-blast.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 14%] Built target vdb-blast make -f libs/cloud/CMakeFiles/cloud.dir/build.make libs/cloud/CMakeFiles/cloud.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud/CMakeFiles/cloud.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/cloud/CMakeFiles/cloud.dir/build.make libs/cloud/CMakeFiles/cloud.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 14%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws-auth.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/aws-auth.c.o -MF CMakeFiles/cloud.dir/aws-auth.c.o.d -o CMakeFiles/cloud.dir/aws-auth.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/aws-auth.c [ 14%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/aws.c.o -MF CMakeFiles/cloud.dir/aws.c.o.d -o CMakeFiles/cloud.dir/aws.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/aws.c [ 14%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud-cmn.c.o -MF CMakeFiles/cloud.dir/cloud-cmn.c.o.d -o CMakeFiles/cloud.dir/cloud-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/cloud-cmn.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/../kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/../kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/cloud-cmn.c:34: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 14%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-mgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud-mgr.c.o -MF CMakeFiles/cloud.dir/cloud-mgr.c.o.d -o CMakeFiles/cloud.dir/cloud-mgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/cloud-mgr.c [ 15%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud.c.o -MF CMakeFiles/cloud.dir/cloud.c.o.d -o CMakeFiles/cloud.dir/cloud.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/cloud.c [ 15%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp-authentication.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/gcp-authentication.c.o -MF CMakeFiles/cloud.dir/gcp-authentication.c.o.d -o CMakeFiles/cloud.dir/gcp-authentication.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/gcp-authentication.c [ 15%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/cloud/CMakeFiles/cloud.dir/gcp.c.o -MF CMakeFiles/cloud.dir/gcp.c.o.d -o CMakeFiles/cloud.dir/gcp.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/cloud/gcp.c [ 15%] Linking C static library ../../ilib/libcloud.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cmake -P CMakeFiles/cloud.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/cloud && /usr/bin/cmake -E cmake_link_script CMakeFiles/cloud.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libcloud.a "CMakeFiles/cloud.dir/aws-auth.c.o" CMakeFiles/cloud.dir/aws.c.o "CMakeFiles/cloud.dir/cloud-cmn.c.o" "CMakeFiles/cloud.dir/cloud-mgr.c.o" CMakeFiles/cloud.dir/cloud.c.o "CMakeFiles/cloud.dir/gcp-authentication.c.o" CMakeFiles/cloud.dir/gcp.c.o /usr/bin/ranlib ../../ilib/libcloud.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 15%] Built target cloud make -f libs/kapp/CMakeFiles/kapp.dir/build.make libs/kapp/CMakeFiles/kapp.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp/CMakeFiles/kapp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kapp/CMakeFiles/kapp.dir/build.make libs/kapp/CMakeFiles/kapp.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 15%] Building C object libs/kapp/CMakeFiles/kapp.dir/main.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/main.c.o -MF CMakeFiles/kapp.dir/main.c.o.d -o CMakeFiles/kapp.dir/main.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/main.c [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/args.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args.c:654:13: warning: 'cleaned' defined but not used [-Wunused-function] 654 | static bool cleaned(unsigned const max, char *result, char const *name) | ^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args.c:639:20: warning: 'base_name' defined but not used [-Wunused-function] 639 | static char const *base_name(char const *fullpath, size_t *outsize) | ^~~~~~~~~ [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/args-conv.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/args-conv.c.o -MF CMakeFiles/kapp.dir/args-conv.c.o.d -o CMakeFiles/kapp.dir/args-conv.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args-conv.c [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/tokenizer.c.o cd 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/tokenizer.c.o -MF CMakeFiles/kapp.dir/tokenizer.c.o.d -o CMakeFiles/kapp.dir/tokenizer.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/tokenizer.c [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/log-xml.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/log-xml.c.o -MF CMakeFiles/kapp.dir/log-xml.c.o.d -o CMakeFiles/kapp.dir/log-xml.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/log-xml.c [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/args-conv-os.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/unix/args-conv-os.c.o -MF CMakeFiles/kapp.dir/unix/args-conv-os.c.o.d -o CMakeFiles/kapp.dir/unix/args-conv-os.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/unix/args-conv-os.c [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o -MF CMakeFiles/kapp.dir/unix/sysmain.c.o.d -o CMakeFiles/kapp.dir/unix/sysmain.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/unix/sysmain.c [ 16%] Building C object libs/kapp/CMakeFiles/kapp.dir/linux/ram.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp.dir/linux/ram.c.o -MF CMakeFiles/kapp.dir/linux/ram.c.o.d -o CMakeFiles/kapp.dir/linux/ram.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/linux/ram.c [ 17%] Linking C static library ../../lib/libkapp.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cmake -P CMakeFiles/kapp.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cmake -E cmake_link_script CMakeFiles/kapp.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libkapp.a CMakeFiles/kapp.dir/main.c.o CMakeFiles/kapp.dir/args.c.o "CMakeFiles/kapp.dir/args-conv.c.o" CMakeFiles/kapp.dir/tokenizer.c.o "CMakeFiles/kapp.dir/log-xml.c.o" "CMakeFiles/kapp.dir/unix/args-conv-os.c.o" CMakeFiles/kapp.dir/unix/sysmain.c.o CMakeFiles/kapp.dir/linux/ram.c.o /usr/bin/ranlib ../../lib/libkapp.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && rm -f libkapp.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && mv libkapp.a libkapp.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libkapp.a.3.0.2 libkapp.a.3 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libkapp.a.3 libkapp.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libkapp.a libkapp-static.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 17%] Built target kapp make -f libs/kapp/CMakeFiles/kapp-norsrc.dir/build.make libs/kapp/CMakeFiles/kapp-norsrc.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp/CMakeFiles/kapp-norsrc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kapp/CMakeFiles/kapp-norsrc.dir/build.make libs/kapp/CMakeFiles/kapp-norsrc.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/main.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/main.c.o -MF CMakeFiles/kapp-norsrc.dir/main.c.o.d -o CMakeFiles/kapp-norsrc.dir/main.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/main.c [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/args.c.o -MF CMakeFiles/kapp-norsrc.dir/args.c.o.d -o CMakeFiles/kapp-norsrc.dir/args.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args.c:654:13: warning: 'cleaned' defined but not used [-Wunused-function] 654 | static bool cleaned(unsigned const max, char *result, char const *name) | ^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args.c:639:20: warning: 'base_name' defined but not used [-Wunused-function] 639 | static char const *base_name(char const *fullpath, size_t *outsize) | ^~~~~~~~~ [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o -MF CMakeFiles/kapp-norsrc.dir/args-conv.c.o.d -o CMakeFiles/kapp-norsrc.dir/args-conv.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/args-conv.c [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/tokenizer.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/tokenizer.c.o -MF CMakeFiles/kapp-norsrc.dir/tokenizer.c.o.d -o CMakeFiles/kapp-norsrc.dir/tokenizer.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/tokenizer.c [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o -MF CMakeFiles/kapp-norsrc.dir/log-xml.c.o.d -o CMakeFiles/kapp-norsrc.dir/log-xml.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/log-xml.c [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o -MF CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o.d -o CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/unix/args-conv-os.c [ 17%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o -MF CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o.d -o CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/unix/sysmain.c [ 18%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/linux/ram.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DNO_KRSRC=1 -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/linux/ram.c.o -MF CMakeFiles/kapp-norsrc.dir/linux/ram.c.o.d -o CMakeFiles/kapp-norsrc.dir/linux/ram.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kapp/linux/ram.c [ 18%] Linking C static library ../../ilib/libkapp-norsrc.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cmake -P CMakeFiles/kapp-norsrc.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kapp && /usr/bin/cmake -E cmake_link_script CMakeFiles/kapp-norsrc.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkapp-norsrc.a "CMakeFiles/kapp-norsrc.dir/main.c.o" "CMakeFiles/kapp-norsrc.dir/args.c.o" "CMakeFiles/kapp-norsrc.dir/args-conv.c.o" "CMakeFiles/kapp-norsrc.dir/tokenizer.c.o" "CMakeFiles/kapp-norsrc.dir/log-xml.c.o" "CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o" "CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o" "CMakeFiles/kapp-norsrc.dir/linux/ram.c.o" /usr/bin/ranlib ../../ilib/libkapp-norsrc.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 18%] Built target kapp-norsrc make -f libs/kdb/CMakeFiles/kdb.dir/build.make libs/kdb/CMakeFiles/kdb.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb/CMakeFiles/kdb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kdb/CMakeFiles/kdb.dir/build.make libs/kdb/CMakeFiles/kdb.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 18%] Building C object libs/kdb/CMakeFiles/kdb.dir/btree.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc 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libs/kdb/CMakeFiles/kdb.dir/btree.c.o -MF CMakeFiles/kdb.dir/btree.c.o.d -o CMakeFiles/kdb.dir/btree.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/btree.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/btree.c: In function 'KBTreeMakeUpdate_1': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/btree.c:349:24: warning: 'rc' may be used uninitialized [-Wmaybe-uninitialized] 349 | if ( rc == 0 ) | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/btree.c:316:10: note: 'rc' was declared here 316 | rc_t rc; | ^~ [ 18%] Building C object libs/kdb/CMakeFiles/kdb.dir/rowset.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/kdb.dir/dbmgr-cmn.c.o -MF CMakeFiles/kdb.dir/dbmgr-cmn.c.o.d -o CMakeFiles/kdb.dir/dbmgr-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/dbmgr-cmn.c [ 18%] Building C object libs/kdb/CMakeFiles/kdb.dir/kdb.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/kdb.dir/idstats.c.o -MF CMakeFiles/kdb.dir/idstats.c.o.d -o CMakeFiles/kdb.dir/idstats.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/idstats.c [ 21%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieidx-v1.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/kdb.dir/trieval-v1.c.o -MF CMakeFiles/kdb.dir/trieval-v1.c.o.d -o CMakeFiles/kdb.dir/trieval-v1.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/trieval-v1.c [ 21%] Building C object libs/kdb/CMakeFiles/kdb.dir/ptrieval-v1.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/kdb.dir/ptrieval-v1.c.o -MF CMakeFiles/kdb.dir/ptrieval-v1.c.o.d -o CMakeFiles/kdb.dir/ptrieval-v1.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/ptrieval-v1.c [ 21%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieidx-v2.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 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object libs/kdb/CMakeFiles/kdb.dir/trieval-v2.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection 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-Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/kdb.dir/u64idx-v3.c.o -MF CMakeFiles/kdb.dir/u64idx-v3.c.o.d -o CMakeFiles/kdb.dir/u64idx-v3.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/u64idx-v3.c [ 21%] Linking C static library ../../ilib/libkdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cmake -P CMakeFiles/kdb.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkdb.a CMakeFiles/kdb.dir/btree.c.o CMakeFiles/kdb.dir/rowset.c.o "CMakeFiles/kdb.dir/rowset-simple.c.o" "CMakeFiles/kdb.dir/dbmgr-cmn.c.o" CMakeFiles/kdb.dir/kdb.c.o CMakeFiles/kdb.dir/dbmgr.c.o "CMakeFiles/kdb.dir/dbcc-cmn.c.o" CMakeFiles/kdb.dir/database.c.o "CMakeFiles/kdb.dir/database-cc.c.o" CMakeFiles/kdb.dir/table.c.o "CMakeFiles/kdb.dir/table-cc.c.o" CMakeFiles/kdb.dir/column.c.o "CMakeFiles/kdb.dir/column-cc.c.o" CMakeFiles/kdb.dir/coldata.c.o CMakeFiles/kdb.dir/colidx.c.o CMakeFiles/kdb.dir/colidx0.c.o CMakeFiles/kdb.dir/colidx1.c.o CMakeFiles/kdb.dir/colidx2.c.o CMakeFiles/kdb.dir/idxblk.c.o CMakeFiles/kdb.dir/meta.c.o CMakeFiles/kdb.dir/index.c.o CMakeFiles/kdb.dir/idstats.c.o "CMakeFiles/kdb.dir/trieidx-v1.c.o" "CMakeFiles/kdb.dir/trieval-v1.c.o" "CMakeFiles/kdb.dir/ptrieval-v1.c.o" "CMakeFiles/kdb.dir/trieidx-v2.c.o" "CMakeFiles/kdb.dir/trieval-v2.c.o" "CMakeFiles/kdb.dir/ptrieval-v2.c.o" "CMakeFiles/kdb.dir/u64idx-v3.c.o" /usr/bin/ranlib ../../ilib/libkdb.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 21%] Built target kdb make -f libs/kdb/CMakeFiles/wkdb.dir/build.make libs/kdb/CMakeFiles/wkdb.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wcolidx2.c.o -MF CMakeFiles/wkdb.dir/wcolidx2.c.o.d -o CMakeFiles/wkdb.dir/wcolidx2.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/wcolidx2.c [ 23%] Building C object libs/kdb/CMakeFiles/wkdb.dir/idxblk.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/wkdb.dir/widxblk.c.o -MF CMakeFiles/wkdb.dir/widxblk.c.o.d -o CMakeFiles/wkdb.dir/widxblk.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/widxblk.c [ 23%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wmeta.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wmeta.c.o -MF CMakeFiles/wkdb.dir/wmeta.c.o.d -o CMakeFiles/wkdb.dir/wmeta.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/wmeta.c [ 24%] Building C object libs/kdb/CMakeFiles/wkdb.dir/windex.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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'KIndexWhack': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/windex.c:164:12: warning: 'rc2' may be used uninitialized [-Wmaybe-uninitialized] 164 | if ( rc == 0 ) | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/windex.c:91:14: note: 'rc2' was declared here 91 | rc_t rc, rc2; | ^~~ [ 24%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v1.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v1.c.o -MF CMakeFiles/wkdb.dir/wtrieidx-v1.c.o.d -o CMakeFiles/wkdb.dir/wtrieidx-v1.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/wtrieidx-v1.c [ 24%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v2.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wtrieidx-v2.c.o -MF CMakeFiles/wkdb.dir/wtrieidx-v2.c.o.d -o CMakeFiles/wkdb.dir/wtrieidx-v2.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/wtrieidx-v2.c [ 24%] Building C object libs/kdb/CMakeFiles/wkdb.dir/wu64idx-v3.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kdb/CMakeFiles/wkdb.dir/wu64idx-v3.c.o -MF CMakeFiles/wkdb.dir/wu64idx-v3.c.o.d -o CMakeFiles/wkdb.dir/wu64idx-v3.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kdb/wu64idx-v3.c [ 24%] Linking C static library ../../ilib/libwkdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cmake -P CMakeFiles/wkdb.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/wkdb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwkdb.a CMakeFiles/wkdb.dir/btree.c.o CMakeFiles/wkdb.dir/rowset.c.o "CMakeFiles/wkdb.dir/rowset-simple.c.o" "CMakeFiles/wkdb.dir/dbmgr-cmn.c.o" CMakeFiles/wkdb.dir/wkdb.c.o CMakeFiles/wkdb.dir/wdbmgr.c.o CMakeFiles/wkdb.dir/wdatabase.c.o CMakeFiles/wkdb.dir/wtable.c.o CMakeFiles/wkdb.dir/wcolumn.c.o CMakeFiles/wkdb.dir/wcoldata.c.o CMakeFiles/wkdb.dir/wcolidx.c.o CMakeFiles/wkdb.dir/wcolidx0.c.o CMakeFiles/wkdb.dir/wcolidx1.c.o CMakeFiles/wkdb.dir/wcolidx2.c.o CMakeFiles/wkdb.dir/idxblk.c.o CMakeFiles/wkdb.dir/widxblk.c.o CMakeFiles/wkdb.dir/wmeta.c.o CMakeFiles/wkdb.dir/windex.c.o "CMakeFiles/wkdb.dir/wtrieidx-v1.c.o" "CMakeFiles/wkdb.dir/wtrieidx-v2.c.o" "CMakeFiles/wkdb.dir/wu64idx-v3.c.o" /usr/bin/ranlib ../../ilib/libwkdb.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 24%] Built target wkdb make -f libs/kfc/CMakeFiles/kfc.dir/build.make libs/kfc/CMakeFiles/kfc.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/except.c.o -MF CMakeFiles/kfc.dir/except.c.o.d -o CMakeFiles/kfc.dir/except.c.o -c 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/refcount.c.o -MF CMakeFiles/kfc.dir/refcount.c.o.d -o CMakeFiles/kfc.dir/refcount.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/refcount.c [ 25%] Building C object libs/kfc/CMakeFiles/kfc.dir/rsrc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/rsrc.c.o -MF CMakeFiles/kfc.dir/rsrc.c.o.d -o CMakeFiles/kfc.dir/rsrc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/rsrc.c [ 25%] Building C object libs/kfc/CMakeFiles/kfc.dir/tstate.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cc 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-fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/tstate.c.o -MF CMakeFiles/kfc.dir/tstate.c.o.d -o CMakeFiles/kfc.dir/tstate.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/tstate.c [ 25%] Building C object libs/kfc/CMakeFiles/kfc.dir/vtbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/vtbl.c.o -MF CMakeFiles/kfc.dir/vtbl.c.o.d -o CMakeFiles/kfc.dir/vtbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/vtbl.c [ 25%] Building C object libs/kfc/CMakeFiles/kfc.dir/xc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/xc.c.o -MF CMakeFiles/kfc.dir/xc.c.o.d -o CMakeFiles/kfc.dir/xc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/xc.c [ 25%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o -MF CMakeFiles/kfc.dir/unix/sysctx.c.o.d -o CMakeFiles/kfc.dir/unix/sysctx.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/unix/sysctx.c [ 26%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o -MF CMakeFiles/kfc.dir/unix/sysrsrc.c.o.d -o CMakeFiles/kfc.dir/unix/sysrsrc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfc/unix/sysrsrc.c [ 26%] Linking C static library ../../ilib/libkfc.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfc && /usr/bin/cmake -P 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/zz_config-grammar.c.o -MF CMakeFiles/kfg.dir/zz_config-grammar.c.o.d -o CMakeFiles/kfg.dir/zz_config-grammar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/zz_config-grammar.c [ 26%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -D__STDC_VERSION__=199901L -MD -MT libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o -MF CMakeFiles/kfg.dir/zz_config-lex.c.o.d -o CMakeFiles/kfg.dir/zz_config-lex.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/zz_config-lex.c : warning: "__STDC_VERSION__" redefined : note: this is the location of the previous definition /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/zz_config-lex.c:2632:16: warning: 'yy_top_state' defined but not used [-Wunused-function] 2632 | static int yy_top_state (yyscan_t yyscanner) | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/zz_config-lex.c:2075:16: warning: 'input' defined but not used [-Wunused-function] 2075 | static int input (yyscan_t yyscanner) | ^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/zz_config-lex.c:2019:17: warning: 'yyunput' defined but not used [-Wunused-function] 2019 | static void yyunput (int c, char * yy_bp , yyscan_t yyscanner) | ^~~~~~~ [ 26%] Building C object libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o -MF CMakeFiles/kfg.dir/config-aws.c.o.d -o CMakeFiles/kfg.dir/config-aws.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config-aws.c [ 26%] Building C object libs/kfg/CMakeFiles/kfg.dir/config.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/config.c.o -MF CMakeFiles/kfg.dir/config.c.o.d -o CMakeFiles/kfg.dir/config.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c In function 'KConfigNodeCreate', inlined from 'KConfigNodeVOpenNodeUpdateInt' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c:873:26: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c:620:30: warning: 'child' may be used uninitialized [-Wmaybe-uninitialized] 620 | child -> dad = self; | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c: In function 'KConfigNodeVOpenNodeUpdateInt': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c:615:30: note: 'child' was declared here 615 | KConfigNode *child; | ^~~~~ In function 'KConfigInit', inlined from 'KConfigFill.isra' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c:3472:9: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c:449:5: warning: 'root' may be used uninitialized [-Wmaybe-uninitialized] 449 | BSTreeInsert ( & self -> tree, & root -> n, KConfigNodeSort ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c: In function 'KConfigFill.isra': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/config.c:3459:19: note: 'root' was declared here 3459 | KConfigNode * root; | ^~~~ [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/docker.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/docker.c.o -MF CMakeFiles/kfg.dir/docker.c.o.d -o CMakeFiles/kfg.dir/docker.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/docker.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/docker.c: In function 'KConfig_Get_GUID_Add_Container': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/docker.c:60:14: warning: unused variable 'good' [-Wunused-variable] 60 | bool good = false; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/docker.c:56:18: warning: unused variable 'pos' [-Wunused-variable] 56 | uint64_t pos = 0; | ^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/docker.c:54:16: warning: unused variable 'inbuf' [-Wunused-variable] 54 | size_t inbuf = 0; | ^~~~~ [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/kart.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/kart.c.o -MF CMakeFiles/kfg.dir/kart.c.o.d -o CMakeFiles/kfg.dir/kart.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/kart.c [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/keystore.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/keystore.c.o -MF CMakeFiles/kfg.dir/keystore.c.o.d -o CMakeFiles/kfg.dir/keystore.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/keystore.c [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/ngc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/ngc.c.o -MF CMakeFiles/kfg.dir/ngc.c.o.d -o CMakeFiles/kfg.dir/ngc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/ngc.c [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/properties.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/properties.c.o -MF CMakeFiles/kfg.dir/properties.c.o.d -o CMakeFiles/kfg.dir/properties.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/properties.c [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/report-kfg.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/report-kfg.c.o -MF CMakeFiles/kfg.dir/report-kfg.c.o.d -o CMakeFiles/kfg.dir/report-kfg.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/report-kfg.c [ 27%] Building C object libs/kfg/CMakeFiles/kfg.dir/repository.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfg/CMakeFiles/kfg.dir/repository.c.o -MF CMakeFiles/kfg.dir/repository.c.o.d -o CMakeFiles/kfg.dir/repository.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfg/repository.c [ 27%] Linking C static library ../../ilib/libkfg.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cmake -P CMakeFiles/kfg.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfg && /usr/bin/cmake -E cmake_link_script CMakeFiles/kfg.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkfg.a "CMakeFiles/kfg.dir/zz_config-grammar.c.o" "CMakeFiles/kfg.dir/zz_config-lex.c.o" "CMakeFiles/kfg.dir/config-aws.c.o" CMakeFiles/kfg.dir/config.c.o CMakeFiles/kfg.dir/docker.c.o CMakeFiles/kfg.dir/kart.c.o CMakeFiles/kfg.dir/keystore.c.o CMakeFiles/kfg.dir/ngc.c.o CMakeFiles/kfg.dir/properties.c.o "CMakeFiles/kfg.dir/report-kfg.c.o" CMakeFiles/kfg.dir/repository.c.o /usr/bin/ranlib ../../ilib/libkfg.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 27%] Built target kfg make -f libs/kfs/CMakeFiles/kfs-nommap.dir/build.make libs/kfs/CMakeFiles/kfs-nommap.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs/CMakeFiles/kfs-nommap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kfs/CMakeFiles/kfs-nommap.dir/build.make libs/kfs/CMakeFiles/kfs-nommap.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 27%] Building C object libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Darrayfile -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o -MF CMakeFiles/kfs-nommap.dir/directory.c.o.d -o CMakeFiles/kfs-nommap.dir/directory.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/directory.c [ 27%] Linking C static library ../../ilib/libkfs-nommap.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cmake -P CMakeFiles/kfs-nommap.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cmake -E cmake_link_script CMakeFiles/kfs-nommap.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkfs-nommap.a "CMakeFiles/kfs-nommap.dir/directory.c.o" /usr/bin/ranlib ../../ilib/libkfs-nommap.a make[4]: Leaving directory 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'/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/directory.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/directory.c.o -MF CMakeFiles/kfs.dir/directory.c.o.d -o CMakeFiles/kfs.dir/directory.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/directory.c [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o -MF CMakeFiles/kfs.dir/arrayfile.c.o.d -o CMakeFiles/kfs.dir/arrayfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arrayfile.c [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/file.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/file.c.o -MF CMakeFiles/kfs.dir/file.c.o.d -o CMakeFiles/kfs.dir/file.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/file.c [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o -MF CMakeFiles/kfs.dir/chunk-reader.c.o.d -o CMakeFiles/kfs.dir/chunk-reader.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/chunk-reader.c [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/gzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/gzip.c.o -MF CMakeFiles/kfs.dir/gzip.c.o.d -o CMakeFiles/kfs.dir/gzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/gzip.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/gzip.c: In function 'KGZipFile_OutDestroy': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/gzip.c:511:13: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 511 | int ret; | ^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/gzip.c: In function 'KGZipFile_OutWrite': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/gzip.c:540:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 540 | int ret; | ^~~ [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/bzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/bzip.c.o -MF CMakeFiles/kfs.dir/bzip.c.o.d -o CMakeFiles/kfs.dir/bzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/bzip.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/bzip.c: In function 'KBZipFileWriteInt': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/bzip.c:112:13: warning: variable 'zret' set but not used [-Wunused-but-set-variable] 112 | int zret; | ^~~~ [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/md5.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/md5.c.o -MF CMakeFiles/kfs.dir/md5.c.o.d -o CMakeFiles/kfs.dir/md5.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c: In function 'KFileMakeMD5Read': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1509:23: warning: array subscript 'KMD5File[0]' is partly outside array bounds of 'unsigned char[168]' [-Warray-bounds=] 1509 | f -> position = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1500:27: note: object of size 168 allocated by 'malloc' 1500 | KMD5File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1511:23: warning: array subscript 'KMD5File[0]' is partly outside array bounds of 'unsigned char[168]' [-Warray-bounds=] 1511 | f -> file = ( KFile* ) src; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1500:27: note: object of size 168 allocated by 'malloc' 1500 | KMD5File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1512:23: warning: array subscript 'KMD5File[0]' is partly outside array bounds of 'unsigned char[168]' [-Warray-bounds=] 1512 | f -> fmt = NULL; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1500:27: note: object of size 168 allocated by 'malloc' 1500 | KMD5File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1513:23: warning: array subscript 'KMD5File[0]' is partly outside array bounds of 'unsigned char[168]' [-Warray-bounds=] 1513 | f -> type = KMD5FileTypeRead; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1500:27: note: object of size 168 allocated by 'malloc' 1500 | KMD5File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1514:23: warning: array subscript 'KMD5File[0]' is partly outside array bounds of 'unsigned char[168]' [-Warray-bounds=] 1514 | f -> u . rd . rc = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1500:27: note: object of size 168 allocated by 'malloc' 1500 | KMD5File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1515:23: warning: array subscript 'KMD5File[0]' is partly outside array bounds of 'unsigned char[168]' [-Warray-bounds=] 1515 | f -> u . rd . eof = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/md5.c:1500:27: note: object of size 168 allocated by 'malloc' 1500 | KMD5File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building C object libs/kfs/CMakeFiles/kfs.dir/crc32.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/crc32.c.o -MF CMakeFiles/kfs.dir/crc32.c.o.d -o CMakeFiles/kfs.dir/crc32.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c: In function 'KFileMakeCRC32Read': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1392:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1392 | f -> position = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1393:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1393 | f -> crc32 = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1394:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1394 | f -> file = ( KFile* ) src; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1395:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1395 | f -> fmt = NULL; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1396:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1396 | f -> type = KCRC32FileTypeRead; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1397:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1397 | f -> u . rd . rc = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1398:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1398 | f -> u . rd . eof = 0; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1399:23: warning: array subscript 'KCRC32File[0]' is partly outside array bounds of 'unsigned char[68]' [-Warray-bounds=] 1399 | f -> u . rd . crc32 = crc32; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/crc32.c:1383:29: note: object of size 68 allocated by 'malloc' 1383 | KCRC32File *f = malloc ( sizeof * f - sizeof f -> u + sizeof f -> u . rd ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/arc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/arc.c.o -MF CMakeFiles/kfs.dir/arc.c.o.d -o CMakeFiles/kfs.dir/arc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arc.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arc.c: In function 'KArcDirResolvePath': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arc.c:2462:14: warning: 'full' may be used uninitialized [-Wmaybe-uninitialized] 2462 | if (full != NULL) | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arc.c:2417:12: note: 'full' declared here 2417 | char * full; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arc.c:2462:14: warning: 'full' may be used uninitialized [-Wmaybe-uninitialized] 2462 | if (full != NULL) | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/arc.c:2417:12: note: 'full' declared here 2417 | char * full; | ^~~~ [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/toc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/toc.c.o -MF CMakeFiles/kfs.dir/toc.c.o.d -o CMakeFiles/kfs.dir/toc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/toc.c [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o -MF CMakeFiles/kfs.dir/tocentry.c.o.d -o CMakeFiles/kfs.dir/tocentry.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/tocentry.c [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o -MF CMakeFiles/kfs.dir/tocdir.c.o.d -o CMakeFiles/kfs.dir/tocdir.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/tocdir.c [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o -MF CMakeFiles/kfs.dir/tocfile.c.o.d -o CMakeFiles/kfs.dir/tocfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/tocfile.c [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/sra.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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-DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/tar.c.o -MF CMakeFiles/kfs.dir/tar.c.o.d -o CMakeFiles/kfs.dir/tar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/tar.c [ 29%] Building C object libs/kfs/CMakeFiles/kfs.dir/teefile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/teefile.c.o -MF CMakeFiles/kfs.dir/teefile.c.o.d -o CMakeFiles/kfs.dir/teefile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/teefile.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile.c.o -MF CMakeFiles/kfs.dir/buffile.c.o.d -o CMakeFiles/kfs.dir/buffile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/buffile.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o -MF CMakeFiles/kfs.dir/buffile-read.c.o.d -o CMakeFiles/kfs.dir/buffile-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/buffile-read.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o -MF CMakeFiles/kfs.dir/buffile-write.c.o.d -o CMakeFiles/kfs.dir/buffile-write.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/buffile-write.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/subfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/subfile.c.o -MF CMakeFiles/kfs.dir/subfile.c.o.d -o CMakeFiles/kfs.dir/subfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/subfile.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o -MF CMakeFiles/kfs.dir/nullfile.c.o.d -o CMakeFiles/kfs.dir/nullfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/nullfile.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/countfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/countfile.c.o -MF CMakeFiles/kfs.dir/countfile.c.o.d -o CMakeFiles/kfs.dir/countfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/countfile.c [ 30%] Building C object libs/kfs/CMakeFiles/kfs.dir/dir_test.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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object libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o -MF CMakeFiles/kfs.dir/pagefile.c.o.d -o CMakeFiles/kfs.dir/pagefile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/pagefile.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/pagefile.c: In function 'KPageFile_whack_recursive': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/pagefile.c:661:18: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 661 | rc_t rc; | ^~ [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/pmem.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/pmem.c.o -MF CMakeFiles/kfs.dir/pmem.c.o.d -o CMakeFiles/kfs.dir/pmem.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/pmem.c [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o -MF CMakeFiles/kfs.dir/readheadfile.c.o.d -o CMakeFiles/kfs.dir/readheadfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/readheadfile.c [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/ramfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/ramfile.c [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o -MF CMakeFiles/kfs.dir/extendable-ramfile.c.o.d -o CMakeFiles/kfs.dir/extendable-ramfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/extendable-ramfile.c [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o -MF CMakeFiles/kfs.dir/quickmount.c.o.d -o CMakeFiles/kfs.dir/quickmount.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/quickmount.c [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/report.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/report.c.o -MF CMakeFiles/kfs.dir/report.c.o.d -o CMakeFiles/kfs.dir/report.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/report.c [ 31%] Building C object libs/kfs/CMakeFiles/kfs.dir/lockfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/lockfile.c.o -MF CMakeFiles/kfs.dir/lockfile.c.o.d -o CMakeFiles/kfs.dir/lockfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/lockfile.c [ 32%] Building C object libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o -MF CMakeFiles/kfs.dir/remove-file-task.c.o.d -o CMakeFiles/kfs.dir/remove-file-task.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/remove-file-task.c [ 32%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o -MF CMakeFiles/kfs.dir/cacheteefile2.c.o.d -o CMakeFiles/kfs.dir/cacheteefile2.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/cacheteefile2.c [ 32%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile3.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/cacheteefile3.c: In function 'KDirectoryVMakeKCacheTeeFileInt': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/cacheteefile3.c:2327:36: warning: unused variable 'cache_path_size' [-Wunused-variable] 2327 | size_t cache_path_size = string_copy_measure | ^~~~~~~~~~~~~~~ [ 32%] Building C object libs/kfs/CMakeFiles/kfs.dir/rrcachedfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/recorder.c.o -MF CMakeFiles/kfs.dir/recorder.c.o.d -o CMakeFiles/kfs.dir/recorder.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/recorder.c [ 32%] Building C object libs/kfs/CMakeFiles/kfs.dir/logfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/logfile.c.o -MF CMakeFiles/kfs.dir/logfile.c.o.d -o CMakeFiles/kfs.dir/logfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/logfile.c [ 32%] Building C object libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX 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libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o -MF CMakeFiles/kfs.dir/callback_file.c.o.d -o CMakeFiles/kfs.dir/callback_file.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/callback_file.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o -MF CMakeFiles/kfs.dir/poolpages.c.o.d -o CMakeFiles/kfs.dir/poolpages.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/poolpages.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o -MF CMakeFiles/kfs.dir/lru_cache.c.o.d -o CMakeFiles/kfs.dir/lru_cache.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/lru_cache.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/lru_cache.c: In function 'get_tail_page': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/lru_cache.c:158:14: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 158 | rc_t rc; | ^~ [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o -MF CMakeFiles/kfs.dir/from_to_namelist.c.o.d -o CMakeFiles/kfs.dir/from_to_namelist.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/from_to_namelist.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o cd 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-ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o -MF CMakeFiles/kfs.dir/limitfile.c.o.d -o CMakeFiles/kfs.dir/limitfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/limitfile.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o -MF CMakeFiles/kfs.dir/appendfile.c.o.d -o CMakeFiles/kfs.dir/appendfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/appendfile.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/mmap.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/mmap.c.o -MF CMakeFiles/kfs.dir/mmap.c.o.d -o CMakeFiles/kfs.dir/mmap.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/mmap.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o -MF CMakeFiles/kfs.dir/unix/sysdir.c.o.d -o CMakeFiles/kfs.dir/unix/sysdir.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix/sysdir.c [ 33%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o -MF CMakeFiles/kfs.dir/unix/sysdll.c.o.d -o CMakeFiles/kfs.dir/unix/sysdll.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix/sysdll.c [ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o -MF CMakeFiles/kfs.dir/unix/sysfile.c.o.d -o CMakeFiles/kfs.dir/unix/sysfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix/sysfile.c [ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o -MF CMakeFiles/kfs.dir/unix/syslockfile.c.o.d -o CMakeFiles/kfs.dir/unix/syslockfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix/syslockfile.c [ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o -MF CMakeFiles/kfs.dir/unix/sysmmap.c.o.d -o CMakeFiles/kfs.dir/unix/sysmmap.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kfs/unix/sysmmap.c [ 34%] Linking C static library ../../ilib/libkfs.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cmake -P CMakeFiles/kfs.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kfs && /usr/bin/cmake -E cmake_link_script CMakeFiles/kfs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkfs.a CMakeFiles/kfs.dir/directory.c.o CMakeFiles/kfs.dir/arrayfile.c.o CMakeFiles/kfs.dir/file.c.o "CMakeFiles/kfs.dir/chunk-reader.c.o" CMakeFiles/kfs.dir/gzip.c.o CMakeFiles/kfs.dir/bzip.c.o CMakeFiles/kfs.dir/md5.c.o CMakeFiles/kfs.dir/crc32.c.o CMakeFiles/kfs.dir/arc.c.o CMakeFiles/kfs.dir/toc.c.o CMakeFiles/kfs.dir/tocentry.c.o CMakeFiles/kfs.dir/tocdir.c.o CMakeFiles/kfs.dir/tocfile.c.o CMakeFiles/kfs.dir/sra.c.o CMakeFiles/kfs.dir/tar.c.o CMakeFiles/kfs.dir/teefile.c.o CMakeFiles/kfs.dir/buffile.c.o "CMakeFiles/kfs.dir/buffile-read.c.o" "CMakeFiles/kfs.dir/buffile-write.c.o" CMakeFiles/kfs.dir/subfile.c.o CMakeFiles/kfs.dir/nullfile.c.o CMakeFiles/kfs.dir/countfile.c.o CMakeFiles/kfs.dir/dir_test.c.o CMakeFiles/kfs.dir/pagefile.c.o CMakeFiles/kfs.dir/pmem.c.o CMakeFiles/kfs.dir/readheadfile.c.o CMakeFiles/kfs.dir/ramfile.c.o "CMakeFiles/kfs.dir/extendable-ramfile.c.o" CMakeFiles/kfs.dir/quickmount.c.o CMakeFiles/kfs.dir/report.c.o CMakeFiles/kfs.dir/lockfile.c.o "CMakeFiles/kfs.dir/remove-file-task.c.o" CMakeFiles/kfs.dir/cacheteefile.c.o CMakeFiles/kfs.dir/cacheteefile2.c.o CMakeFiles/kfs.dir/cacheteefile3.c.o CMakeFiles/kfs.dir/rrcachedfile.c.o CMakeFiles/kfs.dir/recorder.c.o CMakeFiles/kfs.dir/logfile.c.o CMakeFiles/kfs.dir/callback_file.c.o CMakeFiles/kfs.dir/poolpages.c.o CMakeFiles/kfs.dir/lru_cache.c.o CMakeFiles/kfs.dir/from_to_namelist.c.o CMakeFiles/kfs.dir/limitfile.c.o CMakeFiles/kfs.dir/appendfile.c.o CMakeFiles/kfs.dir/mmap.c.o CMakeFiles/kfs.dir/unix/sysdir.c.o CMakeFiles/kfs.dir/unix/sysdll.c.o CMakeFiles/kfs.dir/unix/sysfile.c.o CMakeFiles/kfs.dir/unix/syslockfile.c.o CMakeFiles/kfs.dir/unix/sysmmap.c.o /usr/bin/ranlib ../../ilib/libkfs.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 34%] Built target kfs make -f libs/klib/CMakeFiles/klib.dir/build.make libs/klib/CMakeFiles/klib.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/CMakeFiles/klib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/klib/CMakeFiles/klib.dir/build.make libs/klib/CMakeFiles/klib.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/all-vdb-version.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/all-vdb-version.c.o -MF CMakeFiles/klib.dir/all-vdb-version.c.o.d -o CMakeFiles/klib.dir/all-vdb-version.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/all-vdb-version.c [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/base64.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/base64.c.o -MF CMakeFiles/klib.dir/base64.c.o.d -o CMakeFiles/klib.dir/base64.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/base64.c [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/bsearch.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/bsearch.c.o -MF CMakeFiles/klib.dir/bsearch.c.o.d -o CMakeFiles/klib.dir/bsearch.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/bsearch.c [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/bstpersist.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/bstpersist.c.o -MF CMakeFiles/klib.dir/bstpersist.c.o.d -o CMakeFiles/klib.dir/bstpersist.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/bstpersist.c [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/btree.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/btree.c.o -MF CMakeFiles/klib.dir/btree.c.o.d -o CMakeFiles/klib.dir/btree.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c: In function 'leaf_entry': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c:630:22: warning: unused variable 'key_prefix_len' [-Wunused-variable] 630 | const size_t key_prefix_len=cnode->key_prefix_len; | ^~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c: In function 'branch_insert': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c:721:14: warning: unused variable 'page' [-Wunused-variable] 721 | uint8_t *page = (uint8_t*) node; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c: In function 'branch_entry': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c:1113:22: warning: unused variable 'key_prefix_len' [-Wunused-variable] 1113 | const size_t key_prefix_len=cnode->key_prefix_len; | ^~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c: At top level: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/btree.c:1526:13: warning: 'btree_validate' defined but not used [-Wunused-function] 1526 | static void btree_validate(uint32_t root, Pager *pager, Pager_vt const *vt ) | ^~~~~~~~~~~~~~ [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/container.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/container.c.o -MF CMakeFiles/klib.dir/container.c.o.d -o CMakeFiles/klib.dir/container.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c: In function 'RebalanceAfterInsert': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:709:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 709 | ( * ( size_t* ) & ( node ) -> par ^= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1130:13: note: in expansion of macro 'CLR_BALANCE' 1130 | CLR_BALANCE ( y, RIGHT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:709:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 709 | ( * ( size_t* ) & ( node ) -> par ^= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1144:13: note: in expansion of macro 'CLR_BALANCE' 1144 | CLR_BALANCE ( y, LEFT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c: In function 'BSTreeInsert': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1196:21: note: in expansion of macro 'SET_BALANCE' 1196 | SET_BALANCE ( q, LEFT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1198:21: note: in expansion of macro 'SET_BALANCE' 1198 | SET_BALANCE ( q, RIGHT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c: In function 'BSTreeInsertUnique': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1263:21: note: in expansion of macro 'SET_BALANCE' 1263 | SET_BALANCE ( q, LEFT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1265:21: note: in expansion of macro 'SET_BALANCE' 1265 | SET_BALANCE ( q, RIGHT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c: In function 'RebalanceAfterUnlink': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1339:17: note: in expansion of macro 'SET_BALANCE' 1339 | SET_BALANCE ( y, RIGHT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:709:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 709 | ( * ( size_t* ) & ( node ) -> par ^= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1342:17: note: in expansion of macro 'CLR_BALANCE' 1342 | CLR_BALANCE ( y, LEFT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1369:25: note: in expansion of macro 'SET_BALANCE' 1369 | SET_BALANCE ( x, LEFT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:707:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 707 | ( * ( size_t* ) & ( node ) -> par &= ~ ( size_t ) 3 ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1373:21: note: in expansion of macro 'ZERO_BALANCE' 1373 | ZERO_BALANCE ( x ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:707:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 707 | ( * ( size_t* ) & ( node ) -> par &= ~ ( size_t ) 3 ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1374:21: note: in expansion of macro 'ZERO_BALANCE' 1374 | ZERO_BALANCE ( y ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1390:17: note: in expansion of macro 'SET_BALANCE' 1390 | SET_BALANCE ( y, LEFT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:711:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 711 | ( * ( size_t* ) & ( node ) -> par |= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1418:25: note: in expansion of macro 'SET_BALANCE' 1418 | SET_BALANCE ( x, RIGHT ); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:707:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 707 | ( * ( size_t* ) & ( node ) -> par &= ~ ( size_t ) 3 ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1422:21: note: in expansion of macro 'ZERO_BALANCE' 1422 | ZERO_BALANCE ( x ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:707:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 707 | ( * ( size_t* ) & ( node ) -> par &= ~ ( size_t ) 3 ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1423:21: note: in expansion of macro 'ZERO_BALANCE' 1423 | ZERO_BALANCE ( y ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:709:9: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 709 | ( * ( size_t* ) & ( node ) -> par ^= ( bal ) ) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/container.c:1428:17: note: in expansion of macro 'CLR_BALANCE' 1428 | CLR_BALANCE ( y, RIGHT ); | ^~~~~~~~~~~ [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/cp1252.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/cp1252.c.o -MF CMakeFiles/klib.dir/cp1252.c.o.d -o CMakeFiles/klib.dir/cp1252.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/cp1252.c [ 35%] Building C object libs/klib/CMakeFiles/klib.dir/crc32.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/crc32.c.o -MF CMakeFiles/klib.dir/crc32.c.o.d -o CMakeFiles/klib.dir/crc32.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/crc32.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/data-buffer.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/data-buffer.c.o -MF CMakeFiles/klib.dir/data-buffer.c.o.d -o CMakeFiles/klib.dir/data-buffer.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/data-buffer.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/guid.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/guid.c.o -MF CMakeFiles/klib.dir/guid.c.o.d -o CMakeFiles/klib.dir/guid.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/guid.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/hashfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/hashfile.c.o -MF CMakeFiles/klib.dir/hashfile.c.o.d -o CMakeFiles/klib.dir/hashfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/hashfile.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/hashtable.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/hashtable.c.o -MF CMakeFiles/klib.dir/hashtable.c.o.d -o CMakeFiles/klib.dir/hashtable.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/hashtable.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o -MF CMakeFiles/klib.dir/iso8859-1.c.o.d -o CMakeFiles/klib.dir/iso8859-1.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/iso8859-1.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/iso8859.c.o -MF CMakeFiles/klib.dir/iso8859.c.o.d -o CMakeFiles/klib.dir/iso8859.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/iso8859.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-grammar.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/zz_json-grammar.c.o -MF CMakeFiles/klib.dir/zz_json-grammar.c.o.d -o CMakeFiles/klib.dir/zz_json-grammar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-grammar.c [ 36%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-lex.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/zz_json-lex.c.o -MF CMakeFiles/klib.dir/zz_json-lex.c.o.d -o CMakeFiles/klib.dir/zz_json-lex.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-lex.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-lex.c:2357:16: warning: 'yy_top_state' defined but not used [-Wunused-function] 2357 | static int yy_top_state (yyscan_t yyscanner) | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-lex.c:2344:17: warning: 'yy_pop_state' defined but not used [-Wunused-function] 2344 | static void yy_pop_state (yyscan_t yyscanner) | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-lex.c:2314:17: warning: 'yy_push_state' defined but not used [-Wunused-function] 2314 | static void yy_push_state (int _new_state , yyscan_t yyscanner) | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-lex.c:1800:16: warning: 'input' defined but not used [-Wunused-function] 1800 | static int input (yyscan_t yyscanner) | ^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/zz_json-lex.c:1744:17: warning: 'yyunput' defined but not used [-Wunused-function] 1744 | static void yyunput (int c, char * yy_bp , yyscan_t yyscanner) | ^~~~~~~ [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/json.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/json.c.o -MF CMakeFiles/klib.dir/json.c.o.d -o CMakeFiles/klib.dir/json.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/json.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/json.c: In function 'ValueToJson': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/json.c:943:8: warning: 'rc' may be used uninitialized [-Wmaybe-uninitialized] 943 | if ( rc != 0 ) | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/json.c:907:10: note: 'rc' was declared here 907 | rc_t rc; | ^~ [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/judy-vector.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/judy-vector.c.o -MF CMakeFiles/klib.dir/judy-vector.c.o.d -o CMakeFiles/klib.dir/judy-vector.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c: In function 'KVectorVisitF64Func': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:1756:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 1756 | value = * ( const float* ) & u32; | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c: In function 'KVectorGet': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:276:73: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 276 | if ( sizeof data > 4 && ( ( uint64_t ) data >> 32 ) != 0 ) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:252:24: note: 'data' was declared here 252 | Word_t data; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:246:44: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 246 | * ( bool* ) buffer = data; | ~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:238:22: note: 'data' was declared here 238 | bool data; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c: In function 'KVectorGetFirst': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:509:69: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 509 | if ( sizeof data > 4 && ( ( uint64_t ) data >> 32 ) != 0 ) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:485:20: note: 'data' was declared here 485 | Word_t data; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c: In function 'KVectorGetPrev': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:737:73: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 737 | if ( sizeof data > 4 && ( ( uint64_t ) data >> 32 ) != 0 ) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:713:24: note: 'data' was declared here 713 | Word_t data; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:707:50: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 707 | * ( bool* ) value_buffer = data; | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:699:22: note: 'data' was declared here 699 | bool data; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c: In function 'KVectorGetNext': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:1008:73: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 1008 | if ( sizeof data > 4 && ( ( uint64_t ) data >> 32 ) != 0 ) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:984:24: note: 'data' was declared here 984 | Word_t data; | ^~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:978:50: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] 978 | * ( bool* ) value_buffer = data; | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:970:22: note: 'data' was declared here 970 | bool data; | ^~~~ In function 'NancyLSet', inlined from 'KVectorSet' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:1286:14: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:1215:25: warning: 'value' may be used uninitialized [-Wmaybe-uninitialized] 1215 | * ( Word_t* ) datap = value; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c: In function 'KVectorSet': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy-vector.c:1232:16: note: 'value' was declared here 1232 | Word_t value; | ^~~~~ [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/ksort.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/ksort.c.o -MF CMakeFiles/klib.dir/ksort.c.o.d -o CMakeFiles/klib.dir/ksort.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/ksort.c [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/log.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/log.c.o -MF CMakeFiles/klib.dir/log.c.o.d -o CMakeFiles/klib.dir/log.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/log.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/log.c: In function 'prep_v_args': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/log.c:482:20: warning: unused variable 'c' [-Wunused-variable] 482 | size_t c = string_copy_measure ( pbuffer + pos, pbsize, truncated ); | ^ [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/md5.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/md5.c.o -MF CMakeFiles/klib.dir/md5.c.o.d -o CMakeFiles/klib.dir/md5.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/md5.c [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/namelist.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/namelist.c.o -MF CMakeFiles/klib.dir/namelist.c.o.d -o CMakeFiles/klib.dir/namelist.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/namelist.c [ 37%] Building C object libs/klib/CMakeFiles/klib.dir/num-gen.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/num-gen.c.o -MF CMakeFiles/klib.dir/num-gen.c.o.d -o CMakeFiles/klib.dir/num-gen.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/num-gen.c [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/out.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/out.c.o -MF CMakeFiles/klib.dir/out.c.o.d -o CMakeFiles/klib.dir/out.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/out.c [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/pack.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/pack.c.o -MF CMakeFiles/klib.dir/pack.c.o.d -o CMakeFiles/klib.dir/pack.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:30: In function 'uint128_shl', inlined from 'uint128_shl' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/arch-impl.h:250:6, inlined from 'Pack64b' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:371:9, inlined from 'Pack' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:513:13: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/arch-impl.h:258:20: warning: 'acc.lo' may be used uninitialized [-Wmaybe-uninitialized] 258 | self -> lo <<= i; | ^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c: In function 'Pack': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:355:15: note: 'acc.lo' was declared here 355 | uint128_t acc; | ^~~ In function 'uint128_shl', inlined from 'uint128_shl' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/arch-impl.h:250:6, inlined from 'Pack64b' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:371:9, inlined from 'Pack' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:513:13: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/arch-impl.h:257:35: warning: 'acc.hi' may be used uninitialized [-Wmaybe-uninitialized] 257 | self -> hi = ( self -> hi << i ) | ( self -> lo >> ( 64 - i ) ); | ~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c: In function 'Pack': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pack.c:355:15: note: 'acc.hi' was declared here 355 | uint128_t acc; | ^~~ [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o -MF CMakeFiles/klib.dir/pbstree-impl.c.o.d -o CMakeFiles/klib.dir/pbstree-impl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pbstree-impl.c [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-swapped.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree-swapped.c.o -MF CMakeFiles/klib.dir/pbstree-swapped.c.o.d -o CMakeFiles/klib.dir/pbstree-swapped.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pbstree-swapped.c [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree.c.o -MF CMakeFiles/klib.dir/pbstree.c.o.d -o CMakeFiles/klib.dir/pbstree.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/pbstree.c [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/printf.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/printf.c.o -MF CMakeFiles/klib.dir/printf.c.o.d -o CMakeFiles/klib.dir/printf.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/printf.c [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/progressbar.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/progressbar.c.o -MF CMakeFiles/klib.dir/progressbar.c.o.d -o CMakeFiles/klib.dir/progressbar.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/progressbar.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/progressbar.c: In function 'update_progressbar': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/progressbar.c:242:20: warning: 'to' may be used uninitialized [-Wmaybe-uninitialized] 242 | if ( to > 0 ) | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/progressbar.c:218:19: note: 'to' was declared here 218 | percent_t to; | ^~ [ 38%] Building C object libs/klib/CMakeFiles/klib.dir/ptpersist.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/ptpersist.c.o -MF CMakeFiles/klib.dir/ptpersist.c.o.d -o CMakeFiles/klib.dir/ptpersist.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/ptpersist.c [ 39%] Building C object libs/klib/CMakeFiles/klib.dir/ptrie.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/ptrie.c.o -MF CMakeFiles/klib.dir/ptrie.c.o.d -o CMakeFiles/klib.dir/ptrie.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/ptrie.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/ptrie.c: In function 'PTrieInitNode': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/ptrie.c:1560:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 1560 | * ( size_t* ) & align2 |= 3; | ^~~~~~~~~~~~~~~~~~~~ [ 39%] Building C object libs/klib/CMakeFiles/klib.dir/qsort.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/qsort.c.o -MF CMakeFiles/klib.dir/qsort.c.o.d -o CMakeFiles/klib.dir/qsort.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/qsort.c [ 39%] Building C object libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o -MF CMakeFiles/klib.dir/rc-idx-tbl.c.o.d -o CMakeFiles/klib.dir/rc-idx-tbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/rc-idx-tbl.c [ 39%] Building C object libs/klib/CMakeFiles/klib.dir/rc-tbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/refcount.c.o -MF CMakeFiles/klib.dir/refcount.c.o.d -o CMakeFiles/klib.dir/refcount.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/refcount.c [ 39%] Building C object libs/klib/CMakeFiles/klib.dir/report-klib.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/report-klib.c:828:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 828 | self.date = __DATE__; | ^~~~~~~~ [ 39%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-32bit.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux 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C object libs/klib/CMakeFiles/klib.dir/sra-release-version.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/status-rc.c.o -MF CMakeFiles/klib.dir/status-rc.c.o.d -o CMakeFiles/klib.dir/status-rc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/status-rc.c [ 40%] Building C object libs/klib/CMakeFiles/klib.dir/status.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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CMakeFiles/klib.dir/symtab.c.o.d -o CMakeFiles/klib.dir/symtab.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/symtab.c [ 40%] Building C object libs/klib/CMakeFiles/klib.dir/text.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/text.c.o -MF CMakeFiles/klib.dir/text.c.o.d -o CMakeFiles/klib.dir/text.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/text.c [ 40%] Building C object libs/klib/CMakeFiles/klib.dir/time.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/token.c.o -MF CMakeFiles/klib.dir/token.c.o.d -o CMakeFiles/klib.dir/token.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/token.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/trie.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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CMakeFiles/klib.dir/unpack.c.o.d -o CMakeFiles/klib.dir/unpack.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/unpack.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/utf8.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/utf8.c.o -MF CMakeFiles/klib.dir/utf8.c.o.d -o CMakeFiles/klib.dir/utf8.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/utf8.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/vector.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/vector_namelist.c.o -MF CMakeFiles/klib.dir/vector_namelist.c.o.d -o CMakeFiles/klib.dir/vector_namelist.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/vector_namelist.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o -MF CMakeFiles/klib.dir/vlen-encode.c.o.d -o CMakeFiles/klib.dir/vlen-encode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/vlen-encode.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/writer.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/release.c.o -MF CMakeFiles/klib.dir/release.c.o.d -o CMakeFiles/klib.dir/release.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/release.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/unix/misc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib 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C object libs/klib/CMakeFiles/klib.dir/unix/syslog.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/unix/systime.c.o -MF CMakeFiles/klib.dir/unix/systime.c.o.d -o CMakeFiles/klib.dir/unix/systime.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/unix/systime.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o -MF CMakeFiles/klib.dir/unix/syswriter.c.o.d -o CMakeFiles/klib.dir/unix/syswriter.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/unix/syswriter.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/linux/syserrcode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/CMakeFiles/klib.dir/linux/syserrcode.c.o -MF CMakeFiles/klib.dir/linux/syserrcode.c.o.d -o CMakeFiles/klib.dir/linux/syserrcode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/linux/syserrcode.c [ 42%] Linking C static library ../../ilib/libklib.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cmake -P CMakeFiles/klib.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib && /usr/bin/cmake -E cmake_link_script CMakeFiles/klib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libklib.a "CMakeFiles/klib.dir/all-vdb-version.c.o" CMakeFiles/klib.dir/base64.c.o CMakeFiles/klib.dir/bsearch.c.o CMakeFiles/klib.dir/bstpersist.c.o CMakeFiles/klib.dir/btree.c.o CMakeFiles/klib.dir/container.c.o CMakeFiles/klib.dir/cp1252.c.o CMakeFiles/klib.dir/crc32.c.o "CMakeFiles/klib.dir/data-buffer.c.o" CMakeFiles/klib.dir/guid.c.o CMakeFiles/klib.dir/hashfile.c.o CMakeFiles/klib.dir/hashtable.c.o "CMakeFiles/klib.dir/iso8859-1.c.o" CMakeFiles/klib.dir/iso8859.c.o "CMakeFiles/klib.dir/zz_json-grammar.c.o" "CMakeFiles/klib.dir/zz_json-lex.c.o" CMakeFiles/klib.dir/json.c.o "CMakeFiles/klib.dir/judy-vector.c.o" CMakeFiles/klib.dir/ksort.c.o CMakeFiles/klib.dir/log.c.o CMakeFiles/klib.dir/md5.c.o CMakeFiles/klib.dir/namelist.c.o "CMakeFiles/klib.dir/num-gen.c.o" CMakeFiles/klib.dir/out.c.o CMakeFiles/klib.dir/pack.c.o "CMakeFiles/klib.dir/pbstree-impl.c.o" "CMakeFiles/klib.dir/pbstree-swapped.c.o" CMakeFiles/klib.dir/pbstree.c.o CMakeFiles/klib.dir/printf.c.o CMakeFiles/klib.dir/progressbar.c.o CMakeFiles/klib.dir/ptpersist.c.o CMakeFiles/klib.dir/ptrie.c.o CMakeFiles/klib.dir/qsort.c.o "CMakeFiles/klib.dir/rc-idx-tbl.c.o" "CMakeFiles/klib.dir/rc-tbl.c.o" CMakeFiles/klib.dir/refcount.c.o "CMakeFiles/klib.dir/report-klib.c.o" "CMakeFiles/klib.dir/SHA-32bit.c.o" "CMakeFiles/klib.dir/SHA-64bit.c.o" "CMakeFiles/klib.dir/sra-release-version.c.o" "CMakeFiles/klib.dir/status-rc-strings.c.o" "CMakeFiles/klib.dir/status-rc.c.o" CMakeFiles/klib.dir/status.c.o CMakeFiles/klib.dir/symtab.c.o CMakeFiles/klib.dir/text.c.o CMakeFiles/klib.dir/time.c.o CMakeFiles/klib.dir/token.c.o CMakeFiles/klib.dir/trie.c.o CMakeFiles/klib.dir/unpack.c.o CMakeFiles/klib.dir/utf8.c.o CMakeFiles/klib.dir/vector.c.o CMakeFiles/klib.dir/vector_namelist.c.o "CMakeFiles/klib.dir/vlen-encode.c.o" CMakeFiles/klib.dir/writer.c.o CMakeFiles/klib.dir/release.c.o CMakeFiles/klib.dir/unix/misc.c.o CMakeFiles/klib.dir/unix/syslog.c.o CMakeFiles/klib.dir/unix/systime.c.o CMakeFiles/klib.dir/unix/syswriter.c.o CMakeFiles/klib.dir/linux/syserrcode.c.o /usr/bin/ranlib ../../ilib/libklib.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 42%] Built target klib make -f libs/klib/judy/CMakeFiles/judy.dir/build.make libs/klib/judy/CMakeFiles/judy.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy/CMakeFiles/judy.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/klib/judy/CMakeFiles/judy.dir/build.make libs/klib/judy/CMakeFiles/judy.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 42%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o -MF CMakeFiles/judy.dir/JudyHS.c.o.d -o CMakeFiles/judy.dir/JudyHS.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyHS.c [ 42%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o -MF CMakeFiles/judy.dir/JudyMalloc.c.o.d -o CMakeFiles/judy.dir/JudyMalloc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyMalloc.c [ 42%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o -MF CMakeFiles/judy.dir/JudySL.c.o.d -o CMakeFiles/judy.dir/JudySL.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudySL.c [ 43%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o -MF CMakeFiles/judy.dir/Judy_Bit.c.o.d -o CMakeFiles/judy.dir/Judy_Bit.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy1Tables.64.c:4, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit.c:5: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyIns.c: In function 'j__udyInsWalk': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyIns.c:1504:51: warning: iteration 8 invokes undefined behavior [-Waggressive-loop-optimizations] 1504 | JU_BITMAPSETL(Pjlb, Pjp->jp_1Index[offset]); /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy1.h:400:58: note: in definition of macro 'J1_JLB_BITMAP' 400 | #define J1_JLB_BITMAP(Pjlb,Subexp) ((Pjlb)->j1lb_Bitmap[Subexp]) | ^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivate.h:822:26: note: in expansion of macro 'JU_SUBEXPL' 822 | (JU_JLB_BITMAP(PJLB, JU_SUBEXPL(INDEX)) |= JU_BITPOSMASKL(INDEX)) | ^~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyIns.c:1504:17: note: in expansion of macro 'JU_BITMAPSETL' 1504 | JU_BITMAPSETL(Pjlb, Pjp->jp_1Index[offset]); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit.c:11: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyIns.c:1503:37: note: within this loop 1503 | for (offset = 0; offset < 15; ++offset) | ~~~~~~~^~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit.c:10: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c: In function 'Judy1Test': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 14 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:663:32: note: in expansion of macro 'CHECKINDEXNATIVE' 663 | case cJ1_JPIMMED_1_15: CHECKINDEXNATIVE(uint8_t, Pjp, 15, Index); | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy1.h:71: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 13 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:664:32: note: in expansion of macro 'CHECKINDEXNATIVE' 664 | case cJ1_JPIMMED_1_14: CHECKINDEXNATIVE(uint8_t, Pjp, 14, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 12 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:665:32: note: in expansion of macro 'CHECKINDEXNATIVE' 665 | case cJ1_JPIMMED_1_13: CHECKINDEXNATIVE(uint8_t, Pjp, 13, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 11 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:666:32: note: in expansion of macro 'CHECKINDEXNATIVE' 666 | case cJ1_JPIMMED_1_12: CHECKINDEXNATIVE(uint8_t, Pjp, 12, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 10 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:667:32: note: in expansion of macro 'CHECKINDEXNATIVE' 667 | case cJ1_JPIMMED_1_11: CHECKINDEXNATIVE(uint8_t, Pjp, 11, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 9 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:668:32: note: in expansion of macro 'CHECKINDEXNATIVE' 668 | case cJ1_JPIMMED_1_10: CHECKINDEXNATIVE(uint8_t, Pjp, 10, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 8 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:669:32: note: in expansion of macro 'CHECKINDEXNATIVE' 669 | case cJ1_JPIMMED_1_09: CHECKINDEXNATIVE(uint8_t, Pjp, 9, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/j__udyGet.c:2, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit.c:23: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c: In function 'j__udy1Test': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 14 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:663:32: note: in expansion of macro 'CHECKINDEXNATIVE' 663 | case cJ1_JPIMMED_1_15: CHECKINDEXNATIVE(uint8_t, Pjp, 15, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 13 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:664:32: note: in expansion of macro 'CHECKINDEXNATIVE' 664 | case cJ1_JPIMMED_1_14: CHECKINDEXNATIVE(uint8_t, Pjp, 14, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 12 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:665:32: note: in expansion of macro 'CHECKINDEXNATIVE' 665 | case cJ1_JPIMMED_1_13: CHECKINDEXNATIVE(uint8_t, Pjp, 13, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 11 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:666:32: note: in expansion of macro 'CHECKINDEXNATIVE' 666 | case cJ1_JPIMMED_1_12: CHECKINDEXNATIVE(uint8_t, Pjp, 12, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 10 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:667:32: note: in expansion of macro 'CHECKINDEXNATIVE' 667 | case cJ1_JPIMMED_1_11: CHECKINDEXNATIVE(uint8_t, Pjp, 11, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 9 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:668:32: note: in expansion of macro 'CHECKINDEXNATIVE' 668 | case cJ1_JPIMMED_1_10: CHECKINDEXNATIVE(uint8_t, Pjp, 10, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:631:35: warning: array subscript 8 is above array bounds of 'uint8_t[8]' {aka 'unsigned char[8]'} [-Warray-bounds=] 631 | if (((LEAF_T *)((PJP)->jp_1Index))[(IDX) - 1] == (LEAF_T)(INDEX)) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyGet.c:669:32: note: in expansion of macro 'CHECKINDEXNATIVE' 669 | case cJ1_JPIMMED_1_09: CHECKINDEXNATIVE(uint8_t, Pjp, 9, Index); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/JudyPrivateBranch.h:81:21: note: while referencing 'j_pi_1Index' 81 | uint8_t j_pi_1Index[sizeof(Word_t)]; // see above. | ^~~~~~~~~~~ [ 43%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit_Count.c [ 43%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux 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libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Next.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Next.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Next.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Bit_Next.c [ 43%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Cascade.c.o -MF CMakeFiles/judy.dir/Judy_Word_Cascade.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Cascade.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Word_Cascade.c [ 44%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Count.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Next.c.o -MF CMakeFiles/judy.dir/Judy_Word_Next.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Next.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Word_Next.c [ 44%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o -MF CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o.d -o CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Word_NextEmpty.c [ 44%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DJU_64BIT -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/.. -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o -MF CMakeFiles/judy.dir/Judy_Word_Prev.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Prev.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/klib/judy/Judy_Word_Prev.c [ 44%] Linking C static library ../../../ilib/libjudy.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cmake -P CMakeFiles/judy.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/klib/judy && /usr/bin/cmake -E cmake_link_script CMakeFiles/judy.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libjudy.a CMakeFiles/judy.dir/JudyHS.c.o CMakeFiles/judy.dir/JudyMalloc.c.o CMakeFiles/judy.dir/JudySL.c.o CMakeFiles/judy.dir/Judy_Bit.c.o CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o CMakeFiles/judy.dir/Judy_Bit_Count.c.o CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o CMakeFiles/judy.dir/Judy_Bit_Next.c.o CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o CMakeFiles/judy.dir/Judy_Bit_Prev.c.o CMakeFiles/judy.dir/Judy_Word.c.o CMakeFiles/judy.dir/Judy_Word_Cascade.c.o CMakeFiles/judy.dir/Judy_Word_Count.c.o CMakeFiles/judy.dir/Judy_Word_Decascade.c.o CMakeFiles/judy.dir/Judy_Word_Next.c.o CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o CMakeFiles/judy.dir/Judy_Word_Prev.c.o /usr/bin/ranlib ../../../ilib/libjudy.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target judy make -f libs/kns/CMakeFiles/kns.dir/build.make libs/kns/CMakeFiles/kns.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns/CMakeFiles/kns.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kns/CMakeFiles/kns.dir/build.make libs/kns/CMakeFiles/kns.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 44%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o -MF CMakeFiles/kns.dir/stream-from-buffer.c.o.d -o CMakeFiles/kns.dir/stream-from-buffer.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/stream-from-buffer.c [ 44%] Building C object libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o -MF CMakeFiles/kns.dir/kns_manager-ext.c.o.d -o CMakeFiles/kns.dir/kns_manager-ext.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/kns_manager-ext.c [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/manager.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/manager.c.o -MF CMakeFiles/kns.dir/manager.c.o.d -o CMakeFiles/kns.dir/manager.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/manager.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/manager.c:71: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/proxy.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/proxy.c.o -MF CMakeFiles/kns.dir/proxy.c.o.d -o CMakeFiles/kns.dir/proxy.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/proxy.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/proxy.c:41: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/stable-http-file.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/stable-http-file.c.o -MF CMakeFiles/kns.dir/stable-http-file.c.o.d -o CMakeFiles/kns.dir/stable-http-file.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/stable-http-file.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/stable-http-file.c:44: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/buffered-stream.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/buffered-stream.c.o -MF CMakeFiles/kns.dir/buffered-stream.c.o.d -o CMakeFiles/kns.dir/buffered-stream.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/buffered-stream.c [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/stream.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/stream.c.o -MF CMakeFiles/kns.dir/stream.c.o.d -o CMakeFiles/kns.dir/stream.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/stream.c [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-files.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-files.c.o -MF CMakeFiles/kns.dir/stream-from-files.c.o.d -o CMakeFiles/kns.dir/stream-from-files.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/stream-from-files.c [ 45%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-streams.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-streams.c.o -MF CMakeFiles/kns.dir/stream-from-streams.c.o.d -o CMakeFiles/kns.dir/stream-from-streams.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/stream-from-streams.c [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/endpoint.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/endpoint.c.o -MF CMakeFiles/kns.dir/endpoint.c.o.d -o CMakeFiles/kns.dir/endpoint.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/endpoint.c [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/tls.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/tls.c.o -MF CMakeFiles/kns.dir/tls.c.o.d -o CMakeFiles/kns.dir/tls.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls.c:50: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls.c:63: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/http-file.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/http-file.c.o -MF CMakeFiles/kns.dir/http-file.c.o.d -o CMakeFiles/kns.dir/http-file.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-file.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-file.c:32: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/http-client.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/http-client.c.o -MF CMakeFiles/kns.dir/http-client.c.o.d -o CMakeFiles/kns.dir/http-client.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-client.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-client.c:53: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/http-request.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/http-request.c.o -MF CMakeFiles/kns.dir/http-request.c.o.d -o CMakeFiles/kns.dir/http-request.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-request.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-request.c:47: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/http-retrier.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/http-retrier.c.o -MF CMakeFiles/kns.dir/http-retrier.c.o.d -o CMakeFiles/kns.dir/http-retrier.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-retrier.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http-retrier.c:45: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/http.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/http.c.o -MF CMakeFiles/kns.dir/http.c.o.d -o CMakeFiles/kns.dir/http.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/http.c:57: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 46%] Building C object libs/kns/CMakeFiles/kns.dir/unix/sysmgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/unix/sysmgr.c.o -MF CMakeFiles/kns.dir/unix/sysmgr.c.o.d -o CMakeFiles/kns.dir/unix/sysmgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix/sysmgr.c [ 47%] Building C object libs/kns/CMakeFiles/kns.dir/unix/syssock.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/unix/syssock.c.o -MF CMakeFiles/kns.dir/unix/syssock.c.o.d -o CMakeFiles/kns.dir/unix/syssock.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix/syssock.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix/syssock.c:53: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 47%] Building C object libs/kns/CMakeFiles/kns.dir/unix/sysstream.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/unix/sysstream.c.o -MF CMakeFiles/kns.dir/unix/sysstream.c.o.d -o CMakeFiles/kns.dir/unix/sysstream.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix/sysstream.c [ 47%] Building C object libs/kns/CMakeFiles/kns.dir/linux/sysendpoint.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/linux/sysendpoint.c.o -MF CMakeFiles/kns.dir/linux/sysendpoint.c.o.d -o CMakeFiles/kns.dir/linux/sysendpoint.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/linux/sysendpoint.c [ 47%] Building C object libs/kns/CMakeFiles/kns.dir/linux/syspoll.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cc -DHAVE_GNU_GET_LIBC_VERSION_F -DHAVE_GNU_LIBC_VERSION_H -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kns/CMakeFiles/kns.dir/linux/syspoll.c.o -MF CMakeFiles/kns.dir/linux/syspoll.c.o.d -o CMakeFiles/kns.dir/linux/syspoll.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kns/linux/syspoll.c [ 47%] Linking C static library ../../ilib/libkns.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cmake -P CMakeFiles/kns.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kns && /usr/bin/cmake -E cmake_link_script CMakeFiles/kns.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkns.a "CMakeFiles/kns.dir/stream-from-buffer.c.o" "CMakeFiles/kns.dir/kns_manager-ext.c.o" CMakeFiles/kns.dir/manager.c.o CMakeFiles/kns.dir/proxy.c.o "CMakeFiles/kns.dir/stable-http-file.c.o" "CMakeFiles/kns.dir/buffered-stream.c.o" CMakeFiles/kns.dir/stream.c.o "CMakeFiles/kns.dir/stream-from-files.c.o" "CMakeFiles/kns.dir/stream-from-streams.c.o" CMakeFiles/kns.dir/endpoint.c.o CMakeFiles/kns.dir/tls.c.o "CMakeFiles/kns.dir/http-file.c.o" "CMakeFiles/kns.dir/http-client.c.o" "CMakeFiles/kns.dir/http-request.c.o" "CMakeFiles/kns.dir/http-retrier.c.o" CMakeFiles/kns.dir/http.c.o CMakeFiles/kns.dir/unix/sysmgr.c.o CMakeFiles/kns.dir/unix/syssock.c.o CMakeFiles/kns.dir/unix/sysstream.c.o CMakeFiles/kns.dir/linux/sysendpoint.c.o CMakeFiles/kns.dir/linux/syspoll.c.o /usr/bin/ranlib ../../ilib/libkns.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 47%] Built target kns make -f libs/kproc/CMakeFiles/kproc.dir/build.make libs/kproc/CMakeFiles/kproc.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc/CMakeFiles/kproc.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kproc/CMakeFiles/kproc.dir/build.make libs/kproc/CMakeFiles/kproc.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 47%] Building C object libs/kproc/CMakeFiles/kproc.dir/task.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/task.c.o -MF CMakeFiles/kproc.dir/task.c.o.d -o CMakeFiles/kproc.dir/task.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/task.c [ 47%] Building C object libs/kproc/CMakeFiles/kproc.dir/procmgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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Building C object libs/kproc/CMakeFiles/kproc.dir/unix/syscond.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/unix/syscond.c.o -MF CMakeFiles/kproc.dir/unix/syscond.c.o.d -o CMakeFiles/kproc.dir/unix/syscond.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix/syscond.c [ 48%] Building C object libs/kproc/CMakeFiles/kproc.dir/unix/systhread.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix/systhread.c [ 48%] Building C object libs/kproc/CMakeFiles/kproc.dir/unix/systimeout.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/unix/systimeout.c.o -MF CMakeFiles/kproc.dir/unix/systimeout.c.o.d -o CMakeFiles/kproc.dir/unix/systimeout.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix/systimeout.c [ 48%] Building C object libs/kproc/CMakeFiles/kproc.dir/linux/sysbarrier.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/linux/sysbarrier.c.o -MF CMakeFiles/kproc.dir/linux/sysbarrier.c.o.d -o CMakeFiles/kproc.dir/linux/sysbarrier.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux/sysbarrier.c [ 48%] Building C object libs/kproc/CMakeFiles/kproc.dir/linux/syslock.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/linux/syslock.c.o -MF CMakeFiles/kproc.dir/linux/syslock.c.o.d -o CMakeFiles/kproc.dir/linux/syslock.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux/syslock.c [ 48%] Building C object libs/kproc/CMakeFiles/kproc.dir/linux/sysmgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/linux/sysmgr.c.o -MF CMakeFiles/kproc.dir/linux/sysmgr.c.o.d -o CMakeFiles/kproc.dir/linux/sysmgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux/sysmgr.c [ 48%] Building C object libs/kproc/CMakeFiles/kproc.dir/sem.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kproc.dir/sem.c.o -MF CMakeFiles/kproc.dir/sem.c.o.d -o CMakeFiles/kproc.dir/sem.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/sem.c [ 48%] Linking C static library ../../ilib/libkproc.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cmake -P CMakeFiles/kproc.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cmake -E cmake_link_script CMakeFiles/kproc.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkproc.a CMakeFiles/kproc.dir/task.c.o CMakeFiles/kproc.dir/procmgr.c.o CMakeFiles/kproc.dir/unix/syscond.c.o CMakeFiles/kproc.dir/unix/systhread.c.o CMakeFiles/kproc.dir/unix/systimeout.c.o CMakeFiles/kproc.dir/linux/sysbarrier.c.o CMakeFiles/kproc.dir/linux/syslock.c.o CMakeFiles/kproc.dir/linux/sysmgr.c.o CMakeFiles/kproc.dir/sem.c.o /usr/bin/ranlib ../../ilib/libkproc.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 48%] Built target kproc make -f libs/kproc/CMakeFiles/kq.dir/build.make libs/kproc/CMakeFiles/kq.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc/CMakeFiles/kq.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/kproc/CMakeFiles/kq.dir/build.make libs/kproc/CMakeFiles/kq.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 48%] Building C object libs/kproc/CMakeFiles/kq.dir/queue.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/kproc && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/kproc/unix -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/kproc/CMakeFiles/kq.dir/queue.c.o -MF CMakeFiles/kq.dir/queue.c.o.d -o CMakeFiles/kq.dir/queue.c.o -c 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto/CMakeFiles/krypto.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/krypto/CMakeFiles/krypto.dir/build.make libs/krypto/CMakeFiles/krypto.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/ciphermgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/ciphermgr.c.o -MF CMakeFiles/krypto.dir/ciphermgr.c.o.d -o CMakeFiles/krypto.dir/ciphermgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/ciphermgr.c [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/wgaencrypt.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/wgaencrypt.c.o -MF CMakeFiles/krypto.dir/wgaencrypt.c.o.d -o CMakeFiles/krypto.dir/wgaencrypt.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/wgaencrypt.c [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/encfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/encfile.c.o -MF CMakeFiles/krypto.dir/encfile.c.o.d -o CMakeFiles/krypto.dir/encfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/encfile.c [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/encfilev2.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/encfilev2.c.o -MF CMakeFiles/krypto.dir/encfilev2.c.o.d -o CMakeFiles/krypto.dir/encfilev2.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/encfilev2.c [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/cipher.c.o -MF CMakeFiles/krypto.dir/cipher.c.o.d -o CMakeFiles/krypto.dir/cipher.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/cipher.c [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/aes_core.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/aes_core.c.o -MF CMakeFiles/krypto.dir/aes_core.c.o.d -o CMakeFiles/krypto.dir/aes_core.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/aes_core.c [ 49%] Building C object libs/krypto/CMakeFiles/krypto.dir/aes-byte.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/aes-byte.c.o -MF CMakeFiles/krypto.dir/aes-byte.c.o.d -o CMakeFiles/krypto.dir/aes-byte.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/aes-byte.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-byte.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/cipher-byte.c.o -MF CMakeFiles/krypto.dir/cipher-byte.c.o.d -o CMakeFiles/krypto.dir/cipher-byte.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/cipher-byte.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/key.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/key.c.o -MF CMakeFiles/krypto.dir/key.c.o.d -o CMakeFiles/krypto.dir/key.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/key.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/reencfile.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/reencfile.c.o -MF CMakeFiles/krypto.dir/reencfile.c.o.d -o CMakeFiles/krypto.dir/reencfile.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/reencfile.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/reencfile.c: In function 'KReencFileReadHandleFooter': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/reencfile.c:561:12: warning: variable 'offset' set but not used [-Wunused-but-set-variable] 561 | size_t offset; | ^~~~~~ [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/rsa-aes-hmac.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/rsa-aes-hmac.c.o -MF CMakeFiles/krypto.dir/rsa-aes-hmac.c.o.d -o CMakeFiles/krypto.dir/rsa-aes-hmac.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/rsa-aes-hmac.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.c.o -MF CMakeFiles/krypto.dir/no-null-ncbi.c.o.d -o CMakeFiles/krypto.dir/no-null-ncbi.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/no-null-ncbi.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.vec.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -DUSEVEC -MD -MT libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.vec.c.o -MF CMakeFiles/krypto.dir/cipher-no-vec.vec.c.o.d -o CMakeFiles/krypto.dir/cipher-no-vec.vec.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/cipher-no-vec.vec.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.vec.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -DUSEVEC -MD -MT libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.vec.c.o -MF CMakeFiles/krypto.dir/no-null-ncbi.vec.c.o.d -o CMakeFiles/krypto.dir/no-null-ncbi.vec.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/no-null-ncbi.vec.c [ 50%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.vecreg.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -DUSEVECREG -MD -MT libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.vecreg.c.o -MF CMakeFiles/krypto.dir/cipher-no-vec.vecreg.c.o.d -o CMakeFiles/krypto.dir/cipher-no-vec.vecreg.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/cipher-no-vec.vecreg.c [ 51%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.vecreg.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -DUSEVECREG -MD -MT libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.vecreg.c.o -MF CMakeFiles/krypto.dir/no-null-ncbi.vecreg.c.o.d -o CMakeFiles/krypto.dir/no-null-ncbi.vecreg.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/no-null-ncbi.vecreg.c [ 51%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.aes-ni.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -DUSEAESNI -MD -MT libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.aes-ni.c.o -MF CMakeFiles/krypto.dir/cipher-no-vec.aes-ni.c.o.d -o CMakeFiles/krypto.dir/cipher-no-vec.aes-ni.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/cipher-no-vec.aes-ni.c [ 51%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.aes-ni.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -DUSEAESNI -MD -MT libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.aes-ni.c.o -MF CMakeFiles/krypto.dir/no-null-ncbi.aes-ni.c.o.d -o CMakeFiles/krypto.dir/no-null-ncbi.aes-ni.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/no-null-ncbi.aes-ni.c [ 51%] Linking C static library ../../ilib/libkrypto.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cmake -P CMakeFiles/krypto.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cmake -E cmake_link_script CMakeFiles/krypto.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkrypto.a CMakeFiles/krypto.dir/ciphermgr.c.o CMakeFiles/krypto.dir/wgaencrypt.c.o CMakeFiles/krypto.dir/encfile.c.o CMakeFiles/krypto.dir/encfilev2.c.o CMakeFiles/krypto.dir/cipher.c.o CMakeFiles/krypto.dir/aes_core.c.o "CMakeFiles/krypto.dir/aes-byte.c.o" "CMakeFiles/krypto.dir/cipher-byte.c.o" CMakeFiles/krypto.dir/key.c.o CMakeFiles/krypto.dir/reencfile.c.o "CMakeFiles/krypto.dir/rsa-aes-hmac.c.o" "CMakeFiles/krypto.dir/no-null-ncbi.c.o" "CMakeFiles/krypto.dir/cipher-no-vec.vec.c.o" "CMakeFiles/krypto.dir/no-null-ncbi.vec.c.o" "CMakeFiles/krypto.dir/cipher-no-vec.vecreg.c.o" "CMakeFiles/krypto.dir/no-null-ncbi.vecreg.c.o" "CMakeFiles/krypto.dir/cipher-no-vec.aes-ni.c.o" "CMakeFiles/krypto.dir/no-null-ncbi.aes-ni.c.o" /usr/bin/ranlib ../../ilib/libkrypto.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 51%] Built target krypto make -f libs/krypto/CMakeFiles/kryptotest.dir/build.make libs/krypto/CMakeFiles/kryptotest.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto/CMakeFiles/kryptotest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/krypto/CMakeFiles/kryptotest.dir/build.make libs/krypto/CMakeFiles/kryptotest.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 51%] Building C object libs/krypto/CMakeFiles/kryptotest.dir/testcipher.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/krypto/CMakeFiles/kryptotest.dir/testcipher.c.o -MF CMakeFiles/kryptotest.dir/testcipher.c.o.d -o CMakeFiles/kryptotest.dir/testcipher.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/krypto/testcipher.c [ 51%] Linking C static library ../../ilib/libkryptotest.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cmake -P CMakeFiles/kryptotest.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/krypto && /usr/bin/cmake -E cmake_link_script CMakeFiles/kryptotest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkryptotest.a CMakeFiles/kryptotest.dir/testcipher.c.o /usr/bin/ranlib ../../ilib/libkryptotest.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 51%] Built target kryptotest make -f libs/schema/CMakeFiles/schema.dir/build.make libs/schema/CMakeFiles/schema.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema/CMakeFiles/schema.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/schema/CMakeFiles/schema.dir/build.make libs/schema/CMakeFiles/schema.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/AST.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/AST.cpp.o -MF CMakeFiles/schema.dir/AST.cpp.o.d -o CMakeFiles/schema.dir/AST.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/AST.cpp /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/AST.cpp: In member function 'SExpression* ncbi::SchemaParser::AST_Expr::MakeBool(ncbi::SchemaParser::ASTBuilder&) const': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/AST.cpp:638:24: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char [17]' [-Warray-bounds=] 638 | x -> u . b [ 0 ] = GetTokenType () == KW_true; | ~~~~~~~~~~~~~~~^ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/AST.cpp:45: In member function 'T* ncbi::SchemaParser::ASTBuilder::Alloc(size_t) [with T = SConstExpr]', inlined from 'SExpression* ncbi::SchemaParser::AST_Expr::MakeBool(ncbi::SchemaParser::ASTBuilder&) const' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/AST.cpp:635:55: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder.hpp:210:52: note: object of size 17 allocated by 'malloc' 210 | T * ret = static_cast < T * > ( malloc ( p_size ) ); // VSchema's tables dispose of objects with free() | ~~~~~~~^~~~~~~~~~ [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-db.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder-db.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder-db.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder-db.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder-db.cpp [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-func.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder-func.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder-func.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder-func.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder-func.cpp [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder-phys.cpp [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder-tbl.cpp [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-type.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder-type.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder-type.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder-type.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder-type.cpp [ 52%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-view.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder-view.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder-view.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder-view.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder-view.cpp [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ASTBuilder.cpp.o -MF CMakeFiles/schema.dir/ASTBuilder.cpp.o.d -o CMakeFiles/schema.dir/ASTBuilder.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ASTBuilder.cpp [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/ErrorReport.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ErrorReport.cpp.o -MF CMakeFiles/schema.dir/ErrorReport.cpp.o.d -o CMakeFiles/schema.dir/ErrorReport.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ErrorReport.cpp [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/ParseTree.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/ParseTree.cpp.o -MF CMakeFiles/schema.dir/ParseTree.cpp.o.d -o CMakeFiles/schema.dir/ParseTree.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/ParseTree.cpp [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/zz_schema-ast.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/zz_schema-ast.cpp.o -MF CMakeFiles/schema.dir/zz_schema-ast.cpp.o.d -o CMakeFiles/schema.dir/zz_schema-ast.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/zz_schema-ast.cpp [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/zz_schema-grammar.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/zz_schema-grammar.cpp.o -MF CMakeFiles/schema.dir/zz_schema-grammar.cpp.o.d -o CMakeFiles/schema.dir/zz_schema-grammar.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/zz_schema-grammar.cpp [ 53%] Building C object libs/schema/CMakeFiles/schema.dir/zz_schema-lex.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -D__STDC_VERSION__=199901L -MD -MT libs/schema/CMakeFiles/schema.dir/zz_schema-lex.c.o -MF CMakeFiles/schema.dir/zz_schema-lex.c.o.d -o CMakeFiles/schema.dir/zz_schema-lex.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/zz_schema-lex.c : warning: "__STDC_VERSION__" redefined : note: this is the location of the previous definition /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/zz_schema-lex.c:2895:16: warning: 'yy_top_state' defined but not used [-Wunused-function] 2895 | static int yy_top_state (yyscan_t yyscanner) | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/zz_schema-lex.c:2338:16: warning: 'input' defined but not used [-Wunused-function] 2338 | static int input (yyscan_t yyscanner) | ^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/zz_schema-lex.c:2282:17: warning: 'yyunput' defined but not used [-Wunused-function] 2282 | static void yyunput (int c, char * yy_bp , yyscan_t yyscanner) | ^~~~~~~ [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/SchemaParser.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/SchemaParser.cpp.o -MF CMakeFiles/schema.dir/SchemaParser.cpp.o.d -o CMakeFiles/schema.dir/SchemaParser.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/SchemaParser.cpp [ 53%] Building CXX object libs/schema/CMakeFiles/schema.dir/SchemaScanner.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/SchemaScanner.cpp.o -MF CMakeFiles/schema.dir/SchemaScanner.cpp.o.d -o CMakeFiles/schema.dir/SchemaScanner.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/SchemaScanner.cpp [ 54%] Building CXX object libs/schema/CMakeFiles/schema.dir/Token.cpp.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -rdynamic -Wall -MD -MT libs/schema/CMakeFiles/schema.dir/Token.cpp.o -MF CMakeFiles/schema.dir/Token.cpp.o.d -o CMakeFiles/schema.dir/Token.cpp.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/schema/Token.cpp [ 54%] Linking CXX static library ../../ilib/libschema.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/cmake -P CMakeFiles/schema.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libschema.a CMakeFiles/schema.dir/AST.cpp.o "CMakeFiles/schema.dir/ASTBuilder-db.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-func.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-type.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-view.cpp.o" CMakeFiles/schema.dir/ASTBuilder.cpp.o CMakeFiles/schema.dir/ErrorReport.cpp.o CMakeFiles/schema.dir/ParseTree.cpp.o "CMakeFiles/schema.dir/zz_schema-ast.cpp.o" "CMakeFiles/schema.dir/zz_schema-grammar.cpp.o" "CMakeFiles/schema.dir/zz_schema-lex.c.o" CMakeFiles/schema.dir/SchemaParser.cpp.o CMakeFiles/schema.dir/SchemaScanner.cpp.o CMakeFiles/schema.dir/Token.cpp.o /usr/bin/ranlib ../../ilib/libschema.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 54%] Built target schema make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search/CMakeFiles/ksrch.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 54%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -MF CMakeFiles/ksrch.dir/agrep-dp.c.o.d -o CMakeFiles/ksrch.dir/agrep-dp.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-dp.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-dp.c: In function 'has_right_approx_match': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-dp.c:764:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 764 | strncpy(subpattern, pattern, plen); | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-dp.c:742:21: note: length computed here 742 | uint32_t plen = strlen(pattern); | ^~~~~~~~~~~~~~~ [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -MF CMakeFiles/ksrch.dir/agrep-myers.c.o.d -o CMakeFiles/ksrch.dir/agrep-myers.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-myers.c [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF CMakeFiles/ksrch.dir/agrep-myersunltd.c.o.d -o CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-myersunltd.c [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/agrep-wumanber.c [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o -MF CMakeFiles/ksrch.dir/fgrep-aho.c.o.d -o CMakeFiles/ksrch.dir/fgrep-aho.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/fgrep-aho.c [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/fgrep-boyermoore.c [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o -MF CMakeFiles/ksrch.dir/fgrep-dumb.c.o.d -o CMakeFiles/ksrch.dir/fgrep-dumb.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/fgrep-dumb.c [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o CMakeFiles/ksrch.dir/nucstrstr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c In function 'nss_unary_expr', inlined from 'nss_expr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1415:13: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1387:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1387 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by 'malloc' 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1388:27: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1388 | e -> sub . op = op_NOT; | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by 'malloc' 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1389:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1389 | e -> sub . expr = NULL; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1382:25: note: object of size 16 allocated by 'malloc' 1382 | NucStrExpr *e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'nss_primary_expr', inlined from 'nss_unary_expr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1367:16, inlined from 'nss_expr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1415:13: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1306:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1306 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by 'malloc' 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1307:27: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1307 | e -> sub . op = op_HEAD; | ~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by 'malloc' 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1308:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1308 | e -> sub . expr = NULL; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by 'malloc' 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1321:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1321 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by 'malloc' 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1322:27: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1322 | e -> sub . op = 0; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by 'malloc' 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1328:31: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1328 | if ( e -> sub . expr == NULL || p == end || * p ++ != ')' ) | ~~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by 'malloc' 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1348:33: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1348 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by 'malloc' 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1349:31: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1349 | e -> sub . op = op_TAIL; | ~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by 'malloc' 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1350:33: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1350 | e -> sub . expr = * expr; | ~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by 'malloc' 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c: In function 'nss_expr': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1461:19: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[24]' [-Warray-bounds=] 1461 | e -> boolean . type = type_OP; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by 'malloc' 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1462:19: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[24]' [-Warray-bounds=] 1462 | e -> boolean . op = op; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by 'malloc' 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1463:19: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[24]' [-Warray-bounds=] 1463 | e -> boolean . left = * expr; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by 'malloc' 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'eval_2na_32', inlined from 'NucStrstrSearch' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:5256:20: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:2968:26: warning: 'slam' may be used uninitialized [-Wmaybe-uninitialized] 2968 | slam >>= 8; | ~~~~~^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c: In function 'NucStrstrSearch': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:2818:9: note: 'slam' was declared here 2818 | int slam; | ^~~~ In function 'eval_2na_16', inlined from 'NucStrstrSearch' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:5252:20: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:2675:26: warning: 'slam' may be used uninitialized [-Wmaybe-uninitialized] 2675 | slam >>= 8; | ~~~~~^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c: In function 'NucStrstrSearch': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:2525:9: note: 'slam' was declared here 2525 | int slam; | ^~~~ In function 'eval_2na_64', inlined from 'NucStrstrSearch' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:5239:20: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:3262:26: warning: 'slam' may be used uninitialized [-Wmaybe-uninitialized] 3262 | slam >>= 8; | ~~~~~^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c: In function 'NucStrstrSearch': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/nucstrstr.c:3112:9: note: 'slam' was declared here 3112 | int slam; | ^~~~ [ 55%] Building C object libs/search/CMakeFiles/ksrch.dir/search.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/search.c.o -MF CMakeFiles/ksrch.dir/search.c.o.d -o CMakeFiles/ksrch.dir/search.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/search.c [ 56%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/search/sw-search.c [ 56%] Linking C static library ../../ilib/libksrch.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" /usr/bin/ranlib ../../ilib/libksrch.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 56%] Built target ksrch make -f libs/sra/CMakeFiles/sradb.dir/build.make libs/sra/CMakeFiles/sradb.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra/CMakeFiles/sradb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/sra/CMakeFiles/sradb.dir/build.make libs/sra/CMakeFiles/sradb.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 56%] Building C object libs/sra/CMakeFiles/sradb.dir/sramgr-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/sramgr-cmn.c.o -MF CMakeFiles/sradb.dir/sramgr-cmn.c.o.d -o CMakeFiles/sradb.dir/sramgr-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sramgr-cmn.c [ 56%] Building C object libs/sra/CMakeFiles/sradb.dir/sratbl-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/sratbl-cmn.c.o -MF CMakeFiles/sradb.dir/sratbl-cmn.c.o.d -o CMakeFiles/sradb.dir/sratbl-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sratbl-cmn.c [ 56%] Building C object libs/sra/CMakeFiles/sradb.dir/sracol.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/sracol.c.o -MF CMakeFiles/sradb.dir/sracol.c.o.d -o CMakeFiles/sradb.dir/sracol.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sracol.c [ 56%] Building C object libs/sra/CMakeFiles/sradb.dir/types.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/types.c.o -MF CMakeFiles/sradb.dir/types.c.o.d -o CMakeFiles/sradb.dir/types.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/types.c [ 56%] Building C object libs/sra/CMakeFiles/sradb.dir/sracache.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/sracache.c.o -MF CMakeFiles/sradb.dir/sracache.c.o.d -o CMakeFiles/sradb.dir/sracache.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sracache.c [ 56%] Building C object libs/sra/CMakeFiles/sradb.dir/sramgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/sramgr.c.o -MF CMakeFiles/sradb.dir/sramgr.c.o.d -o CMakeFiles/sradb.dir/sramgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sramgr.c [ 57%] Building C object libs/sra/CMakeFiles/sradb.dir/sratbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/sradb.dir/sratbl.c.o -MF CMakeFiles/sradb.dir/sratbl.c.o.d -o CMakeFiles/sradb.dir/sratbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sratbl.c [ 57%] Linking C static library ../../ilib/libsradb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cmake -P CMakeFiles/sradb.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/sradb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libsradb.a "CMakeFiles/sradb.dir/sramgr-cmn.c.o" "CMakeFiles/sradb.dir/sratbl-cmn.c.o" CMakeFiles/sradb.dir/sracol.c.o CMakeFiles/sradb.dir/types.c.o CMakeFiles/sradb.dir/sracache.c.o CMakeFiles/sradb.dir/sramgr.c.o CMakeFiles/sradb.dir/sratbl.c.o /usr/bin/ranlib ../../ilib/libsradb.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 57%] Built target sradb make -f libs/sra/CMakeFiles/wsradb.dir/build.make libs/sra/CMakeFiles/wsradb.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra/CMakeFiles/wsradb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/sra/CMakeFiles/wsradb.dir/build.make libs/sra/CMakeFiles/wsradb.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 57%] Building C object libs/sra/CMakeFiles/wsradb.dir/sramgr-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/sramgr-cmn.c.o -MF CMakeFiles/wsradb.dir/sramgr-cmn.c.o.d -o CMakeFiles/wsradb.dir/sramgr-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sramgr-cmn.c [ 57%] Building C object libs/sra/CMakeFiles/wsradb.dir/sratbl-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/sratbl-cmn.c.o -MF CMakeFiles/wsradb.dir/sratbl-cmn.c.o.d -o CMakeFiles/wsradb.dir/sratbl-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sratbl-cmn.c [ 57%] Building C object libs/sra/CMakeFiles/wsradb.dir/sracol.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/sracol.c.o -MF CMakeFiles/wsradb.dir/sracol.c.o.d -o CMakeFiles/wsradb.dir/sracol.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sracol.c [ 58%] Building C object libs/sra/CMakeFiles/wsradb.dir/types.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/types.c.o -MF CMakeFiles/wsradb.dir/types.c.o.d -o CMakeFiles/wsradb.dir/types.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/types.c [ 58%] Building C object libs/sra/CMakeFiles/wsradb.dir/sracache.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/sracache.c.o -MF CMakeFiles/wsradb.dir/sracache.c.o.d -o CMakeFiles/wsradb.dir/sracache.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/sracache.c [ 58%] Building C object libs/sra/CMakeFiles/wsradb.dir/wsramgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/wsramgr.c.o -MF CMakeFiles/wsradb.dir/wsramgr.c.o.d -o CMakeFiles/wsradb.dir/wsramgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/wsramgr.c [ 58%] Building C object libs/sra/CMakeFiles/wsradb.dir/wsratbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/wsradb.dir/wsratbl.c.o -MF CMakeFiles/wsradb.dir/wsratbl.c.o.d -o CMakeFiles/wsradb.dir/wsratbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/wsratbl.c [ 58%] Linking C static library ../../ilib/libwsradb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cmake -P CMakeFiles/wsradb.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/wsradb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwsradb.a "CMakeFiles/wsradb.dir/sramgr-cmn.c.o" "CMakeFiles/wsradb.dir/sratbl-cmn.c.o" CMakeFiles/wsradb.dir/sracol.c.o CMakeFiles/wsradb.dir/types.c.o CMakeFiles/wsradb.dir/sracache.c.o CMakeFiles/wsradb.dir/wsramgr.c.o CMakeFiles/wsradb.dir/wsratbl.c.o /usr/bin/ranlib ../../ilib/libwsradb.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 58%] Built target wsradb make -f libs/sra/CMakeFiles/srareader.dir/build.make libs/sra/CMakeFiles/srareader.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra/CMakeFiles/srareader.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/sra/CMakeFiles/srareader.dir/build.make libs/sra/CMakeFiles/srareader.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 58%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-cmn.c.o -MF CMakeFiles/srareader.dir/reader-cmn.c.o.d -o CMakeFiles/srareader.dir/reader-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/reader-cmn.c [ 58%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-fastq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-fastq.c.o -MF CMakeFiles/srareader.dir/reader-fastq.c.o.d -o CMakeFiles/srareader.dir/reader-fastq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/reader-fastq.c [ 58%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-sff.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-sff.c.o -MF CMakeFiles/srareader.dir/reader-sff.c.o.d -o CMakeFiles/srareader.dir/reader-sff.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/reader-sff.c [ 58%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-illumina.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-illumina.c.o -MF CMakeFiles/srareader.dir/reader-illumina.c.o.d -o CMakeFiles/srareader.dir/reader-illumina.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/reader-illumina.c [ 58%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-abi.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-abi.c.o -MF CMakeFiles/srareader.dir/reader-abi.c.o.d -o CMakeFiles/srareader.dir/reader-abi.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sra/reader-abi.c [ 58%] Linking C static library ../../ilib/libsrareader.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cmake -P CMakeFiles/srareader.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/srareader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libsrareader.a "CMakeFiles/srareader.dir/reader-cmn.c.o" "CMakeFiles/srareader.dir/reader-fastq.c.o" "CMakeFiles/srareader.dir/reader-sff.c.o" "CMakeFiles/srareader.dir/reader-illumina.c.o" "CMakeFiles/srareader.dir/reader-abi.c.o" /usr/bin/ranlib ../../ilib/libsrareader.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 58%] Built target srareader make -f libs/sraxf/CMakeFiles/sraxf.dir/build.make libs/sraxf/CMakeFiles/sraxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf/CMakeFiles/sraxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/sraxf/CMakeFiles/sraxf.dir/build.make libs/sraxf/CMakeFiles/sraxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/untyped.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/untyped.c.o -MF CMakeFiles/sraxf.dir/untyped.c.o.d -o CMakeFiles/sraxf.dir/untyped.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/untyped.c [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress-init.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress-init.c.o -MF CMakeFiles/sraxf.dir/v0-decompress-init.c.o.d -o CMakeFiles/sraxf.dir/v0-decompress-init.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-decompress-init.c [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress.c.o -MF CMakeFiles/sraxf.dir/v0-decompress.c.o.d -o CMakeFiles/sraxf.dir/v0-decompress.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-decompress.c [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-funcs.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/v0-funcs.c.o -MF CMakeFiles/sraxf.dir/v0-funcs.c.o.d -o CMakeFiles/sraxf.dir/v0-funcs.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-funcs.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-funcs.c: In function 'sra_read_decompress_slx': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-funcs.c:108:14: warning: unused variable 'row_len' [-Wunused-variable] 108 | uint32_t row_len = HTONS ( * ( const uint16_t* ) & p [ 5 ] ); | ^~~~~~~ [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/bio-start.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/bio-start.c.o -MF CMakeFiles/sraxf.dir/bio-start.c.o.d -o CMakeFiles/sraxf.dir/bio-start.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/bio-start.c [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o -MF CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o.d -o CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/dynamic-454-read-descriptor.c [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/format-spot-name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/format-spot-name.c.o -MF CMakeFiles/sraxf.dir/format-spot-name.c.o.d -o CMakeFiles/sraxf.dir/format-spot-name.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c: In function 'format_spot_name': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:151:39: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized] 151 | uint32_t q= x << 12 | y; | ~~^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:95:24: note: 'x' was declared here 95 | uint32_t i, j, x, y; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:151:34: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 151 | uint32_t q= x << 12 | y; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:95:27: note: 'y' was declared here 95 | uint32_t i, j, x, y; | ^ [ 59%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/extract-name_coord.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/extract-name_coord.c.o -MF CMakeFiles/sraxf.dir/extract-name_coord.c.o.d -o CMakeFiles/sraxf.dir/extract-name_coord.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/extract-name_coord.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o -MF CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o.d -o CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-454.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o -MF CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o.d -o CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-illumina.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o -MF CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o.d -o CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-abi.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o -MF CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o.d -o CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-helicos.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-ion-torrent.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-ion-torrent.c.o -MF CMakeFiles/sraxf.dir/tokenize-spot_name-ion-torrent.c.o.d -o CMakeFiles/sraxf.dir/tokenize-spot_name-ion-torrent.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-ion-torrent.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-generic-fastq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-generic-fastq.c.o -MF CMakeFiles/sraxf.dir/tokenize-spot_name-generic-fastq.c.o.d -o CMakeFiles/sraxf.dir/tokenize-spot_name-generic-fastq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-generic-fastq.c [ 60%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/color-from-dna.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/color-from-dna.c.o -MF CMakeFiles/sraxf.dir/color-from-dna.c.o.d -o CMakeFiles/sraxf.dir/color-from-dna.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/color-from-dna.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/dna-from-color.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/dna-from-color.c.o -MF CMakeFiles/sraxf.dir/dna-from-color.c.o.d -o CMakeFiles/sraxf.dir/dna-from-color.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/dna-from-color.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/use-rna-flag.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/use-rna-flag.c.o -MF CMakeFiles/sraxf.dir/use-rna-flag.c.o.d -o CMakeFiles/sraxf.dir/use-rna-flag.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/use-rna-flag.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/use-rna-flag.c:35: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rna-flag-common.c:58:13: warning: 'copyRNA_to_DNA' defined but not used [-Wunused-function] 58 | static rc_t copyRNA_to_DNA(struct Self *const self | ^~~~~~~~~~~~~~ [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/spot-desc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/spot-desc.c.o -MF CMakeFiles/sraxf.dir/spot-desc.c.o.d -o CMakeFiles/sraxf.dir/spot-desc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/spot-desc.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/read-desc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/read-desc.c.o -MF CMakeFiles/sraxf.dir/read-desc.c.o.d -o CMakeFiles/sraxf.dir/read-desc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/read-desc.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/rotate.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/rotate.c.o -MF CMakeFiles/sraxf.dir/rotate.c.o.d -o CMakeFiles/sraxf.dir/rotate.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rotate.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/swap.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/swap.c.o -MF CMakeFiles/sraxf.dir/swap.c.o.d -o CMakeFiles/sraxf.dir/swap.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/swap.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/denormalize.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/denormalize.c.o -MF CMakeFiles/sraxf.dir/denormalize.c.o.d -o CMakeFiles/sraxf.dir/denormalize.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/denormalize.c [ 61%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/normalize.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/normalize.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/qual4_decode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/qual4_decode.c.o -MF CMakeFiles/sraxf.dir/qual4_decode.c.o.d -o CMakeFiles/sraxf.dir/qual4_decode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/qual4_decode.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/read-seg-from-readn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/read-seg-from-readn.c.o -MF CMakeFiles/sraxf.dir/read-seg-from-readn.c.o.d -o CMakeFiles/sraxf.dir/read-seg-from-readn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/read-seg-from-readn.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/rewrite-spot-name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/rewrite-spot-name.c.o -MF CMakeFiles/sraxf.dir/rewrite-spot-name.c.o.d -o CMakeFiles/sraxf.dir/rewrite-spot-name.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rewrite-spot-name.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/make-position.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/make-position.c.o -MF CMakeFiles/sraxf.dir/make-position.c.o.d -o CMakeFiles/sraxf.dir/make-position.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/make-position.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/process-position.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/process-position.c.o -MF CMakeFiles/sraxf.dir/process-position.c.o.d -o CMakeFiles/sraxf.dir/process-position.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/process-position.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/extract-coordinates.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/extract-coordinates.c.o -MF CMakeFiles/sraxf.dir/extract-coordinates.c.o.d -o CMakeFiles/sraxf.dir/extract-coordinates.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/extract-coordinates.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/fpcodec.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/fpcodec.c.o -MF CMakeFiles/sraxf.dir/fpcodec.c.o.d -o CMakeFiles/sraxf.dir/fpcodec.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/fpcodec.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/index_lookup.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/index_lookup.c.o -MF CMakeFiles/sraxf.dir/index_lookup.c.o.d -o CMakeFiles/sraxf.dir/index_lookup.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/index_lookup.c [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/varloc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/varloc.c.o -MF CMakeFiles/sraxf.dir/varloc.c.o.d -o CMakeFiles/sraxf.dir/varloc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/varloc.c [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/spot-filter.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/spot-filter.c.o -MF CMakeFiles/sraxf.dir/spot-filter.c.o.d -o CMakeFiles/sraxf.dir/spot-filter.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/spot-filter.c [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/syn_quality.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/syn_quality.c.o -MF CMakeFiles/sraxf.dir/syn_quality.c.o.d -o CMakeFiles/sraxf.dir/syn_quality.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/syn_quality.c [ 63%] Linking C static library ../../ilib/libsraxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cmake -P CMakeFiles/sraxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cmake -E cmake_link_script CMakeFiles/sraxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libsraxf.a CMakeFiles/sraxf.dir/untyped.c.o "CMakeFiles/sraxf.dir/v0-decompress-init.c.o" "CMakeFiles/sraxf.dir/v0-decompress.c.o" "CMakeFiles/sraxf.dir/v0-funcs.c.o" "CMakeFiles/sraxf.dir/bio-start.c.o" "CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o" "CMakeFiles/sraxf.dir/format-spot-name.c.o" "CMakeFiles/sraxf.dir/extract-name_coord.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-ion-torrent.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-generic-fastq.c.o" "CMakeFiles/sraxf.dir/color-from-dna.c.o" "CMakeFiles/sraxf.dir/dna-from-color.c.o" "CMakeFiles/sraxf.dir/use-rna-flag.c.o" "CMakeFiles/sraxf.dir/spot-desc.c.o" "CMakeFiles/sraxf.dir/read-desc.c.o" CMakeFiles/sraxf.dir/rotate.c.o CMakeFiles/sraxf.dir/swap.c.o CMakeFiles/sraxf.dir/denormalize.c.o CMakeFiles/sraxf.dir/normalize.c.o CMakeFiles/sraxf.dir/qual4_decode.c.o "CMakeFiles/sraxf.dir/read-seg-from-readn.c.o" "CMakeFiles/sraxf.dir/rewrite-spot-name.c.o" "CMakeFiles/sraxf.dir/make-position.c.o" "CMakeFiles/sraxf.dir/process-position.c.o" "CMakeFiles/sraxf.dir/extract-coordinates.c.o" CMakeFiles/sraxf.dir/fpcodec.c.o CMakeFiles/sraxf.dir/index_lookup.c.o CMakeFiles/sraxf.dir/varloc.c.o "CMakeFiles/sraxf.dir/spot-filter.c.o" CMakeFiles/sraxf.dir/syn_quality.c.o /usr/bin/ranlib ../../ilib/libsraxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target sraxf make -f libs/sraxf/CMakeFiles/wsraxf.dir/build.make libs/sraxf/CMakeFiles/wsraxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf/CMakeFiles/wsraxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/sraxf/CMakeFiles/wsraxf.dir/build.make libs/sraxf/CMakeFiles/wsraxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 63%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/untyped.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/untyped.c.o -MF CMakeFiles/wsraxf.dir/untyped.c.o.d -o CMakeFiles/wsraxf.dir/untyped.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/untyped.c [ 63%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress-init.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress-init.c.o -MF CMakeFiles/wsraxf.dir/v0-decompress-init.c.o.d -o CMakeFiles/wsraxf.dir/v0-decompress-init.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-decompress-init.c [ 63%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress.c.o -MF CMakeFiles/wsraxf.dir/v0-decompress.c.o.d -o CMakeFiles/wsraxf.dir/v0-decompress.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-decompress.c [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-funcs.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/v0-funcs.c.o -MF CMakeFiles/wsraxf.dir/v0-funcs.c.o.d -o CMakeFiles/wsraxf.dir/v0-funcs.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-funcs.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-funcs.c: In function 'sra_read_decompress_slx': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/v0-funcs.c:108:14: warning: unused variable 'row_len' [-Wunused-variable] 108 | uint32_t row_len = HTONS ( * ( const uint16_t* ) & p [ 5 ] ); | ^~~~~~~ [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/bio-start.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/bio-start.c.o -MF CMakeFiles/wsraxf.dir/bio-start.c.o.d -o CMakeFiles/wsraxf.dir/bio-start.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/bio-start.c [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o -MF CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o.d -o CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/dynamic-454-read-descriptor.c [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/format-spot-name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/format-spot-name.c.o -MF CMakeFiles/wsraxf.dir/format-spot-name.c.o.d -o CMakeFiles/wsraxf.dir/format-spot-name.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c: In function 'format_spot_name': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:151:39: warning: 'x' may be used uninitialized [-Wmaybe-uninitialized] 151 | uint32_t q= x << 12 | y; | ~~^~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:95:24: note: 'x' was declared here 95 | uint32_t i, j, x, y; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:151:34: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized] 151 | uint32_t q= x << 12 | y; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/format-spot-name.c:95:27: note: 'y' was declared here 95 | uint32_t i, j, x, y; | ^ [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_coord.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_coord.c.o -MF CMakeFiles/wsraxf.dir/extract-name_coord.c.o.d -o CMakeFiles/wsraxf.dir/extract-name_coord.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/extract-name_coord.c [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-454.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces 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Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-illumina.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-illumina.c.o -MF CMakeFiles/wsraxf.dir/tokenize-spot_name-illumina.c.o.d -o CMakeFiles/wsraxf.dir/tokenize-spot_name-illumina.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-illumina.c [ 64%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-abi.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-abi.c.o -MF CMakeFiles/wsraxf.dir/tokenize-spot_name-abi.c.o.d -o CMakeFiles/wsraxf.dir/tokenize-spot_name-abi.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-abi.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-helicos.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-helicos.c.o -MF CMakeFiles/wsraxf.dir/tokenize-spot_name-helicos.c.o.d -o CMakeFiles/wsraxf.dir/tokenize-spot_name-helicos.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-helicos.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-ion-torrent.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-ion-torrent.c.o -MF CMakeFiles/wsraxf.dir/tokenize-spot_name-ion-torrent.c.o.d -o CMakeFiles/wsraxf.dir/tokenize-spot_name-ion-torrent.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-ion-torrent.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-generic-fastq.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-generic-fastq.c.o -MF CMakeFiles/wsraxf.dir/tokenize-spot_name-generic-fastq.c.o.d -o CMakeFiles/wsraxf.dir/tokenize-spot_name-generic-fastq.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/tokenize-spot_name-generic-fastq.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/color-from-dna.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/color-from-dna.c.o -MF CMakeFiles/wsraxf.dir/color-from-dna.c.o.d -o CMakeFiles/wsraxf.dir/color-from-dna.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/color-from-dna.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/dna-from-color.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/dna-from-color.c.o -MF CMakeFiles/wsraxf.dir/dna-from-color.c.o.d -o CMakeFiles/wsraxf.dir/dna-from-color.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/dna-from-color.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/use-rna-flag.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/use-rna-flag.c.o -MF CMakeFiles/wsraxf.dir/use-rna-flag.c.o.d -o CMakeFiles/wsraxf.dir/use-rna-flag.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/use-rna-flag.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/use-rna-flag.c:35: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rna-flag-common.c:58:13: warning: 'copyRNA_to_DNA' defined but not used [-Wunused-function] 58 | static rc_t copyRNA_to_DNA(struct Self *const self | ^~~~~~~~~~~~~~ [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/spot-desc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/spot-desc.c.o -MF CMakeFiles/wsraxf.dir/spot-desc.c.o.d -o CMakeFiles/wsraxf.dir/spot-desc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/spot-desc.c [ 65%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/read-desc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/read-desc.c.o -MF CMakeFiles/wsraxf.dir/read-desc.c.o.d -o CMakeFiles/wsraxf.dir/read-desc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/read-desc.c [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/rotate.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rotate.c [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/swap.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/swap.c.o -MF CMakeFiles/wsraxf.dir/swap.c.o.d -o CMakeFiles/wsraxf.dir/swap.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/swap.c [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/denormalize.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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libs/sraxf/CMakeFiles/wsraxf.dir/normalize.c.o -MF CMakeFiles/wsraxf.dir/normalize.c.o.d -o CMakeFiles/wsraxf.dir/normalize.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/normalize.c [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/qual4_decode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/qual4_decode.c.o -MF CMakeFiles/wsraxf.dir/qual4_decode.c.o.d -o CMakeFiles/wsraxf.dir/qual4_decode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/qual4_decode.c [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/read-seg-from-readn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/read-seg-from-readn.c [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/rewrite-spot-name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/rewrite-spot-name.c.o -MF CMakeFiles/wsraxf.dir/rewrite-spot-name.c.o.d -o CMakeFiles/wsraxf.dir/rewrite-spot-name.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rewrite-spot-name.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/make-position.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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libs/sraxf/CMakeFiles/wsraxf.dir/process-position.c.o -MF CMakeFiles/wsraxf.dir/process-position.c.o.d -o CMakeFiles/wsraxf.dir/process-position.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/process-position.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-coordinates.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/extract-coordinates.c.o -MF CMakeFiles/wsraxf.dir/extract-coordinates.c.o.d -o CMakeFiles/wsraxf.dir/extract-coordinates.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/extract-coordinates.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/fpcodec.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/fpcodec.c.o -MF CMakeFiles/wsraxf.dir/fpcodec.c.o.d -o CMakeFiles/wsraxf.dir/fpcodec.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/fpcodec.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/index_lookup.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/index_lookup.c.o -MF CMakeFiles/wsraxf.dir/index_lookup.c.o.d -o CMakeFiles/wsraxf.dir/index_lookup.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/index_lookup.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/varloc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/varloc.c.o -MF CMakeFiles/wsraxf.dir/varloc.c.o.d -o CMakeFiles/wsraxf.dir/varloc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/varloc.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/spot-filter.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/spot-filter.c.o -MF CMakeFiles/wsraxf.dir/spot-filter.c.o.d -o CMakeFiles/wsraxf.dir/spot-filter.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/spot-filter.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/syn_quality.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/syn_quality.c.o -MF CMakeFiles/wsraxf.dir/syn_quality.c.o.d -o CMakeFiles/wsraxf.dir/syn_quality.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/syn_quality.c [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_fmt.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_fmt.c.o -MF CMakeFiles/wsraxf.dir/extract-name_fmt.c.o.d -o CMakeFiles/wsraxf.dir/extract-name_fmt.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/extract-name_fmt.c [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-spot_name.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/extract-spot_name.c.o -MF CMakeFiles/wsraxf.dir/extract-spot_name.c.o.d -o CMakeFiles/wsraxf.dir/extract-spot_name.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/extract-spot_name.c [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/stats.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/stats.c.o -MF CMakeFiles/wsraxf.dir/stats.c.o.d -o CMakeFiles/wsraxf.dir/stats.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats.c In function 'group_stats_write', inlined from 'stats_data_write_all' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats.c:379:9, inlined from 'stats_data_whack' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats.c:391:5: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats.c:323:13: warning: array subscript 21 is outside array bounds of 'char[21]' [-Warray-bounds=] 323 | name[4] = '\0'; | ~~~~~~~~^~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats.c: In function 'stats_data_whack': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats.c:316:10: note: at offset 21 into object 'namepath' of size 21 316 | char namepath[sizeof(namebase) + 3]; /* sizeof(namebase) includes terminator */ | ^~~~~~~~ [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/stats_quality.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/stats_quality.c.o -MF CMakeFiles/wsraxf.dir/stats_quality.c.o.d -o CMakeFiles/wsraxf.dir/stats_quality.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/stats_quality.c [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/qual4_encode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/qual4_encode.c.o -MF CMakeFiles/wsraxf.dir/qual4_encode.c.o.d -o CMakeFiles/wsraxf.dir/qual4_encode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/qual4_encode.c [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/set-rna-flag.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/set-rna-flag.c.o -MF CMakeFiles/wsraxf.dir/set-rna-flag.c.o.d -o CMakeFiles/wsraxf.dir/set-rna-flag.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/set-rna-flag.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/set-rna-flag.c:35: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/sraxf/rna-flag-common.c:73:13: warning: 'copyDNA_to_RNA' defined but not used [-Wunused-function] 73 | static rc_t copyDNA_to_RNA(struct Self *const self | ^~~~~~~~~~~~~~ [ 68%] Linking C static library ../../ilib/libwsraxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cmake -P CMakeFiles/wsraxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/sraxf && /usr/bin/cmake -E cmake_link_script CMakeFiles/wsraxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwsraxf.a CMakeFiles/wsraxf.dir/untyped.c.o "CMakeFiles/wsraxf.dir/v0-decompress-init.c.o" "CMakeFiles/wsraxf.dir/v0-decompress.c.o" "CMakeFiles/wsraxf.dir/v0-funcs.c.o" "CMakeFiles/wsraxf.dir/bio-start.c.o" "CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o" "CMakeFiles/wsraxf.dir/format-spot-name.c.o" "CMakeFiles/wsraxf.dir/extract-name_coord.c.o" "CMakeFiles/wsraxf.dir/tokenize-spot_name-454.c.o" "CMakeFiles/wsraxf.dir/tokenize-spot_name-illumina.c.o" "CMakeFiles/wsraxf.dir/tokenize-spot_name-abi.c.o" "CMakeFiles/wsraxf.dir/tokenize-spot_name-helicos.c.o" "CMakeFiles/wsraxf.dir/tokenize-spot_name-ion-torrent.c.o" "CMakeFiles/wsraxf.dir/tokenize-spot_name-generic-fastq.c.o" "CMakeFiles/wsraxf.dir/color-from-dna.c.o" "CMakeFiles/wsraxf.dir/dna-from-color.c.o" "CMakeFiles/wsraxf.dir/use-rna-flag.c.o" "CMakeFiles/wsraxf.dir/spot-desc.c.o" "CMakeFiles/wsraxf.dir/read-desc.c.o" CMakeFiles/wsraxf.dir/rotate.c.o CMakeFiles/wsraxf.dir/swap.c.o CMakeFiles/wsraxf.dir/denormalize.c.o CMakeFiles/wsraxf.dir/normalize.c.o CMakeFiles/wsraxf.dir/qual4_decode.c.o "CMakeFiles/wsraxf.dir/read-seg-from-readn.c.o" "CMakeFiles/wsraxf.dir/rewrite-spot-name.c.o" "CMakeFiles/wsraxf.dir/make-position.c.o" "CMakeFiles/wsraxf.dir/process-position.c.o" "CMakeFiles/wsraxf.dir/extract-coordinates.c.o" CMakeFiles/wsraxf.dir/fpcodec.c.o CMakeFiles/wsraxf.dir/index_lookup.c.o CMakeFiles/wsraxf.dir/varloc.c.o "CMakeFiles/wsraxf.dir/spot-filter.c.o" CMakeFiles/wsraxf.dir/syn_quality.c.o "CMakeFiles/wsraxf.dir/extract-name_fmt.c.o" "CMakeFiles/wsraxf.dir/extract-spot_name.c.o" CMakeFiles/wsraxf.dir/stats.c.o CMakeFiles/wsraxf.dir/stats_quality.c.o CMakeFiles/wsraxf.dir/qual4_encode.c.o "CMakeFiles/wsraxf.dir/set-rna-flag.c.o" /usr/bin/ranlib ../../ilib/libwsraxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target wsraxf make -f libs/vdb/CMakeFiles/vdb.dir/build.make libs/vdb/CMakeFiles/vdb.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb/CMakeFiles/vdb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/vdb/CMakeFiles/vdb.dir/build.make libs/vdb/CMakeFiles/vdb.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 68%] Building C object libs/vdb/CMakeFiles/vdb.dir/dbmgr-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/dbmgr-cmn.c.o -MF CMakeFiles/vdb.dir/dbmgr-cmn.c.o.d -o CMakeFiles/vdb.dir/dbmgr-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/dbmgr-cmn.c [ 68%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-tok.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-tok.c.o -MF CMakeFiles/vdb.dir/schema-tok.c.o.d -o CMakeFiles/vdb.dir/schema-tok.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-tok.c [ 68%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-parse.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-parse.c.o -MF CMakeFiles/vdb.dir/schema-parse.c.o.d -o CMakeFiles/vdb.dir/schema-parse.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-parse.c [ 68%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-type.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-type.c.o -MF CMakeFiles/vdb.dir/schema-type.c.o.d -o CMakeFiles/vdb.dir/schema-type.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-type.c [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-func.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-func.c.o -MF CMakeFiles/vdb.dir/schema-func.c.o.d -o CMakeFiles/vdb.dir/schema-func.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c: In function 'SFunctionRestSchemaParms': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c:591:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 591 | rc_t rc; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c: In function 'SFunctionRestFactParms': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c:637:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 637 | rc_t rc; | ^~ [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-prod.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-prod.c.o -MF CMakeFiles/vdb.dir/schema-prod.c.o.d -o CMakeFiles/vdb.dir/schema-prod.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-prod.c [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-expr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-expr.c.o -MF CMakeFiles/vdb.dir/schema-expr.c.o.d -o CMakeFiles/vdb.dir/schema-expr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c: In function 'SExpressionDump': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:434:37: warning: '%04x' directive writing between 4 and 8 bytes into a region of size 6 [-Wformat-overflow=] 434 | sprintf ( buff, "\\u%04x", ch ); | ^~~~ In function 'SConstExprDump', inlined from 'SExpressionDump' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:568:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:434:33: note: directive argument in the range [128, 4294967295] 434 | sprintf ( buff, "\\u%04x", ch ); | ^~~~~~~~~ In file included from /usr/include/stdio.h:964, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:40: In function 'sprintf', inlined from 'SConstExprDump' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:434:17, inlined from 'SExpressionDump' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:568:16: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'bool_expr', inlined from 'const_expr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:1344:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:949:22: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 949 | x -> u . b [ 0 ] = ( t -> id == kw_true ); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:951:20: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 951 | x -> dad . var = eConstExpr; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfc/refcount.h:39, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/refcount.h:35, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-priv.h:51, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:29: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/atomic32.h:51:39: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 51 | ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) ) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:952:5: note: in expansion of macro 'atomic32_set' 952 | atomic32_set ( & x -> dad . refcount, 1 ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:953:23: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 953 | x -> td . type_id = VSchemaCacheIntrinsicTypeId ( self, & s_bool_id, "bool" ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:954:19: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 954 | x -> td . dim = 1; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'bool_expr', inlined from 'fact_value' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:1562:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:949:22: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 949 | x -> u . b [ 0 ] = ( t -> id == kw_true ); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:951:20: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 951 | x -> dad . var = eConstExpr; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/atomic32.h:51:39: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 51 | ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) ) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:952:5: note: in expansion of macro 'atomic32_set' 952 | atomic32_set ( & x -> dad . refcount, 1 ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:953:23: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 953 | x -> td . type_id = VSchemaCacheIntrinsicTypeId ( self, & s_bool_id, "bool" ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:954:19: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 954 | x -> td . dim = 1; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'bool_expr', inlined from 'expression' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:1943:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:949:22: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 949 | x -> u . b [ 0 ] = ( t -> id == kw_true ); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:951:20: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 951 | x -> dad . var = eConstExpr; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/atomic32.h:51:39: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 51 | ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) ) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:952:5: note: in expansion of macro 'atomic32_set' 952 | atomic32_set ( & x -> dad . refcount, 1 ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:953:23: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 953 | x -> td . type_id = VSchemaCacheIntrinsicTypeId ( self, & s_bool_id, "bool" ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:954:19: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 954 | x -> td . dim = 1; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-eval.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-eval.c.o -MF CMakeFiles/vdb.dir/schema-eval.c.o.d -o CMakeFiles/vdb.dir/schema-eval.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-eval.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-eval.c: In function 'VSchemaCacheIntrinsicTypeId': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-eval.c:72:18: warning: variable 'prev' set but not used [-Wunused-but-set-variable] 72 | uint32_t prev; | ^~~~ [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-tbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-tbl.c.o -MF CMakeFiles/vdb.dir/schema-tbl.c.o.d -o CMakeFiles/vdb.dir/schema-tbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-tbl.c [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-view.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-view.c.o -MF CMakeFiles/vdb.dir/schema-view.c.o.d -o CMakeFiles/vdb.dir/schema-view.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-view.c [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-db.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-db.c.o -MF CMakeFiles/vdb.dir/schema-db.c.o.d -o CMakeFiles/vdb.dir/schema-db.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-db.c [ 69%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-dump.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-dump.c.o -MF CMakeFiles/vdb.dir/schema-dump.c.o.d -o CMakeFiles/vdb.dir/schema-dump.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-dump.c [ 70%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-int.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-int.c.o -MF CMakeFiles/vdb.dir/schema-int.c.o.d -o CMakeFiles/vdb.dir/schema-int.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-int.c [ 70%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema.c.o -MF CMakeFiles/vdb.dir/schema.c.o.d -o CMakeFiles/vdb.dir/schema.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema.c [ 70%] Building C object libs/vdb/CMakeFiles/vdb.dir/linker-int.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/linker-int.c.o -MF CMakeFiles/vdb.dir/linker-int.c.o.d -o CMakeFiles/vdb.dir/linker-int.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/linker-int.c [ 70%] Building C object libs/vdb/CMakeFiles/vdb.dir/linker-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" 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Building C object libs/vdb/CMakeFiles/vdb.dir/database-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/database-cmn.c.o -MF CMakeFiles/vdb.dir/database-cmn.c.o.d -o CMakeFiles/vdb.dir/database-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/database-cmn.c [ 70%] Building C object libs/vdb/CMakeFiles/vdb.dir/database-depend.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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-DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/database-load.c.o -MF CMakeFiles/vdb.dir/database-load.c.o.d -o CMakeFiles/vdb.dir/database-load.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/database-load.c [ 70%] Building C object libs/vdb/CMakeFiles/vdb.dir/table-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/table-cmn.c.o -MF CMakeFiles/vdb.dir/table-cmn.c.o.d -o CMakeFiles/vdb.dir/table-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/table-cmn.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/table-load.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/table-load.c.o -MF CMakeFiles/vdb.dir/table-load.c.o.d -o CMakeFiles/vdb.dir/table-load.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/table-load.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/cursor-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/cursor-cmn.c.o -MF CMakeFiles/vdb.dir/cursor-cmn.c.o.d -o CMakeFiles/vdb.dir/cursor-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-cmn.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/column-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/column-cmn.c.o -MF CMakeFiles/vdb.dir/column-cmn.c.o.d -o CMakeFiles/vdb.dir/column-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/column-cmn.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/prod-cmn.c.o -MF CMakeFiles/vdb.dir/prod-cmn.c.o.d -o CMakeFiles/vdb.dir/prod-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-cmn.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-cmn.c: In function 'VPivotProdRead': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-cmn.c:2135:18: warning: unused variable 'rowLen' [-Wunused-variable] 2135 | uint32_t rowLen = PageMapGetIdxRowInfo ( rowIdBlob -> pm, ( uint32_t ) ( * p_id - rowIdBlob -> start_id ), & elemNum, & repeat_count ); | ^~~~~~ [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod-expr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/prod-expr.c.o -MF CMakeFiles/vdb.dir/prod-expr.c.o.d -o CMakeFiles/vdb.dir/prod-expr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-expr.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod-func.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/prod-func.c.o -MF CMakeFiles/vdb.dir/prod-func.c.o.d -o CMakeFiles/vdb.dir/prod-func.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c In function 'VProdResolveBuildFactParms', inlined from 'VProdResolveFuncExpr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c:756:26: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c:664:38: warning: array subscript 17 is above array bounds of 'struct [16]' [-Warray-bounds=] 664 | cxp = ( const SConstExpr** ) & fp -> argv [ count ]; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:31, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-priv.h:39, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/vdb/xform.h: In function 'VProdResolveFuncExpr': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/vdb/xform.h:673:7: note: while referencing 'argv' 673 | } argv [ 16 ]; | ^~~~ [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/phys-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/phys-cmn.c.o -MF CMakeFiles/vdb.dir/phys-cmn.c.o.d -o CMakeFiles/vdb.dir/phys-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/phys-cmn.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/phys-load.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/phys-load.c.o -MF CMakeFiles/vdb.dir/phys-load.c.o.d -o CMakeFiles/vdb.dir/phys-load.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/phys-load.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/blob.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/blob.c.o -MF CMakeFiles/vdb.dir/blob.c.o.d -o CMakeFiles/vdb.dir/blob.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/blob.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/blob-headers.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/blob-headers.c.o -MF CMakeFiles/vdb.dir/blob-headers.c.o.d -o CMakeFiles/vdb.dir/blob-headers.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/blob-headers.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/page-map.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/page-map.c.o -MF CMakeFiles/vdb.dir/page-map.c.o.d -o CMakeFiles/vdb.dir/page-map.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/page-map.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/row-id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/row-id.c.o -MF CMakeFiles/vdb.dir/row-id.c.o.d -o CMakeFiles/vdb.dir/row-id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/row-id.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/row-len.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/row-len.c.o -MF CMakeFiles/vdb.dir/row-len.c.o.d -o CMakeFiles/vdb.dir/row-len.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/row-len.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/fixed-row-len.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/fixed-row-len.c.o -MF CMakeFiles/vdb.dir/fixed-row-len.c.o.d -o CMakeFiles/vdb.dir/fixed-row-len.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/fixed-row-len.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/merge.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/merge.c.o -MF CMakeFiles/vdb.dir/merge.c.o.d -o CMakeFiles/vdb.dir/merge.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c:34: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c: In function 'vdb_merge_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c:213:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 213 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = vdb_merge_impl; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/split.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/split.c.o -MF CMakeFiles/vdb.dir/split.c.o.d -o CMakeFiles/vdb.dir/split.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-priv.h:39, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c:33: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c: In function 'vdb_split_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c:394:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 394 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = split_impl; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/compare.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/compare.c.o -MF CMakeFiles/vdb.dir/compare.c.o.d -o CMakeFiles/vdb.dir/compare.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c: In function 'vdb_compare_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:189:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 189 | VFUNCDESC_INTERNAL_FUNCS(rslt)->cf = blob_compare_f32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:200:17: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 200 | if (VFUNCDESC_INTERNAL_FUNCS(rslt)->cf) { | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:218:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 218 | VFUNCDESC_INTERNAL_FUNCS(rslt)->cf = blob_compare; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c: In function 'vdb_no_compare_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:240:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 240 | VFUNCDESC_INTERNAL_FUNCS(rslt)->cf = true_func; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/meta-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/meta-read.c.o -MF CMakeFiles/vdb.dir/meta-read.c.o.d -o CMakeFiles/vdb.dir/meta-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/meta-read.c [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/meta-value.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/meta-value.c.o -MF CMakeFiles/vdb.dir/meta-value.c.o.d -o CMakeFiles/vdb.dir/meta-value.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/meta-value.c [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/meta-attr-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/meta-attr-read.c.o -MF CMakeFiles/vdb.dir/meta-attr-read.c.o.d -o CMakeFiles/vdb.dir/meta-attr-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/meta-attr-read.c [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/cast.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/cast.c.o -MF CMakeFiles/vdb.dir/cast.c.o.d -o CMakeFiles/vdb.dir/cast.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c:29: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c: In function 'vdb_cast_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c:487:13: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 487 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = copy; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/range-validate.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/range-validate.c.o -MF CMakeFiles/vdb.dir/range-validate.c.o.d -o CMakeFiles/vdb.dir/range-validate.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c: In function 'vdb_range_validate_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:134:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 134 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:139:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 139 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:144:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 144 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:149:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 149 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I64; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:158:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 158 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:163:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 163 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:168:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 168 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:173:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 173 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U64; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:182:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 182 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_F32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:187:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 187 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_F64; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/parameter-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/parameter-read.c.o -MF CMakeFiles/vdb.dir/parameter-read.c.o.d -o CMakeFiles/vdb.dir/parameter-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/parameter-read.c [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/redimension.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/redimension.c.o -MF CMakeFiles/vdb.dir/redimension.c.o.d -o CMakeFiles/vdb.dir/redimension.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c:33: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c: In function 'vdb_redimension_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c:104:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 104 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = redimension_drvr; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/index_project.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/index_project.c.o -MF CMakeFiles/vdb.dir/index_project.c.o.d -o CMakeFiles/vdb.dir/index_project.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c:33: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c: In function 'idx_text_project_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c:211:17: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 211 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = index_project_impl; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/index_lookup.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/index_lookup.c.o -MF CMakeFiles/vdb.dir/index_lookup.c.o.d -o CMakeFiles/vdb.dir/index_lookup.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_lookup.c [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/transpose.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/transpose.c.o -MF CMakeFiles/vdb.dir/transpose.c.o.d -o CMakeFiles/vdb.dir/transpose.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c: In function 'vdb_detranspose_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:360:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 360 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:363:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 363 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:366:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 366 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:369:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 369 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted64; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c: In function 'vdb_transpose_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:703:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 703 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:706:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 706 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:709:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 709 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:712:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 712 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted64; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/delta_average.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/delta_average.c.o -MF CMakeFiles/vdb.dir/delta_average.c.o.d -o CMakeFiles/vdb.dir/delta_average.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c: In function 'vdb_undelta_average_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c:199:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 199 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = undelta_average; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c: In function 'vdb_delta_average_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c:295:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 295 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = delta_average; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/report-vdb.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT 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libs/vdb/CMakeFiles/vdb.dir/cursor-view.c.o -MF CMakeFiles/vdb.dir/cursor-view.c.o.d -o CMakeFiles/vdb.dir/cursor-view.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-view.c [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/cursor-table.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix 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-ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/vdb.dir/phys.c.o -MF CMakeFiles/vdb.dir/phys.c.o.d -o CMakeFiles/vdb.dir/phys.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/phys.c [ 76%] Linking C static library ../../ilib/libvdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cmake -P CMakeFiles/vdb.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvdb.a "CMakeFiles/vdb.dir/dbmgr-cmn.c.o" "CMakeFiles/vdb.dir/schema-tok.c.o" "CMakeFiles/vdb.dir/schema-parse.c.o" "CMakeFiles/vdb.dir/schema-type.c.o" "CMakeFiles/vdb.dir/schema-func.c.o" "CMakeFiles/vdb.dir/schema-prod.c.o" "CMakeFiles/vdb.dir/schema-expr.c.o" "CMakeFiles/vdb.dir/schema-eval.c.o" "CMakeFiles/vdb.dir/schema-tbl.c.o" "CMakeFiles/vdb.dir/schema-view.c.o" "CMakeFiles/vdb.dir/schema-db.c.o" "CMakeFiles/vdb.dir/schema-dump.c.o" "CMakeFiles/vdb.dir/schema-int.c.o" CMakeFiles/vdb.dir/schema.c.o "CMakeFiles/vdb.dir/linker-int.c.o" "CMakeFiles/vdb.dir/linker-cmn.c.o" "CMakeFiles/vdb.dir/database-cmn.c.o" "CMakeFiles/vdb.dir/database-depend.c.o" "CMakeFiles/vdb.dir/database-load.c.o" "CMakeFiles/vdb.dir/table-cmn.c.o" "CMakeFiles/vdb.dir/table-load.c.o" "CMakeFiles/vdb.dir/cursor-cmn.c.o" "CMakeFiles/vdb.dir/column-cmn.c.o" "CMakeFiles/vdb.dir/prod-cmn.c.o" "CMakeFiles/vdb.dir/prod-expr.c.o" "CMakeFiles/vdb.dir/prod-func.c.o" "CMakeFiles/vdb.dir/phys-cmn.c.o" "CMakeFiles/vdb.dir/phys-load.c.o" CMakeFiles/vdb.dir/blob.c.o "CMakeFiles/vdb.dir/blob-headers.c.o" "CMakeFiles/vdb.dir/page-map.c.o" "CMakeFiles/vdb.dir/row-id.c.o" "CMakeFiles/vdb.dir/row-len.c.o" "CMakeFiles/vdb.dir/fixed-row-len.c.o" CMakeFiles/vdb.dir/merge.c.o CMakeFiles/vdb.dir/split.c.o CMakeFiles/vdb.dir/compare.c.o "CMakeFiles/vdb.dir/meta-read.c.o" "CMakeFiles/vdb.dir/meta-value.c.o" "CMakeFiles/vdb.dir/meta-attr-read.c.o" CMakeFiles/vdb.dir/cast.c.o "CMakeFiles/vdb.dir/range-validate.c.o" "CMakeFiles/vdb.dir/parameter-read.c.o" CMakeFiles/vdb.dir/redimension.c.o CMakeFiles/vdb.dir/index_project.c.o CMakeFiles/vdb.dir/index_lookup.c.o CMakeFiles/vdb.dir/transpose.c.o CMakeFiles/vdb.dir/delta_average.c.o "CMakeFiles/vdb.dir/report-vdb.c.o" CMakeFiles/vdb.dir/bytecode.c.o CMakeFiles/vdb.dir/view.c.o "CMakeFiles/vdb.dir/cursor-view.c.o" "CMakeFiles/vdb.dir/cursor-table.c.o" CMakeFiles/vdb.dir/dbmgr.c.o CMakeFiles/vdb.dir/linker.c.o CMakeFiles/vdb.dir/database.c.o CMakeFiles/vdb.dir/table.c.o CMakeFiles/vdb.dir/cursor.c.o CMakeFiles/vdb.dir/column.c.o CMakeFiles/vdb.dir/prod.c.o CMakeFiles/vdb.dir/phys.c.o /usr/bin/ranlib ../../ilib/libvdb.a make[4]: Leaving directory 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'/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 76%] Building C object libs/vdb/CMakeFiles/wvdb.dir/dbmgr-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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CMakeFiles/wvdb.dir/schema-parse.c.o.d -o CMakeFiles/wvdb.dir/schema-parse.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-parse.c [ 77%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-type.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-type.c.o -MF CMakeFiles/wvdb.dir/schema-type.c.o.d -o CMakeFiles/wvdb.dir/schema-type.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-type.c [ 77%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-func.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-func.c.o -MF CMakeFiles/wvdb.dir/schema-func.c.o.d -o CMakeFiles/wvdb.dir/schema-func.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c: In function 'SFunctionRestSchemaParms': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c:591:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 591 | rc_t rc; | ^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c: In function 'SFunctionRestFactParms': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-func.c:637:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 637 | rc_t rc; | ^~ [ 77%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-prod.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-prod.c.o -MF CMakeFiles/wvdb.dir/schema-prod.c.o.d -o CMakeFiles/wvdb.dir/schema-prod.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-prod.c [ 77%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-expr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-expr.c.o -MF CMakeFiles/wvdb.dir/schema-expr.c.o.d -o CMakeFiles/wvdb.dir/schema-expr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c: In function 'SExpressionDump': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:434:37: warning: '%04x' directive writing between 4 and 8 bytes into a region of size 6 [-Wformat-overflow=] 434 | sprintf ( buff, "\\u%04x", ch ); | ^~~~ In function 'SConstExprDump', inlined from 'SExpressionDump' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:568:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:434:33: note: directive argument in the range [128, 4294967295] 434 | sprintf ( buff, "\\u%04x", ch ); | ^~~~~~~~~ In file included from /usr/include/stdio.h:964, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:40: In function 'sprintf', inlined from 'SConstExprDump' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:434:17, inlined from 'SExpressionDump' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:568:16: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'bool_expr', inlined from 'const_expr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:1344:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:949:22: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 949 | x -> u . b [ 0 ] = ( t -> id == kw_true ); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:951:20: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 951 | x -> dad . var = eConstExpr; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfc/refcount.h:39, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/klib/refcount.h:35, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-priv.h:51, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:29: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/atomic32.h:51:39: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 51 | ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) ) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:952:5: note: in expansion of macro 'atomic32_set' 952 | atomic32_set ( & x -> dad . refcount, 1 ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:953:23: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 953 | x -> td . type_id = VSchemaCacheIntrinsicTypeId ( self, & s_bool_id, "bool" ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:954:19: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 954 | x -> td . dim = 1; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'bool_expr', inlined from 'fact_value' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:1562:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:949:22: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 949 | x -> u . b [ 0 ] = ( t -> id == kw_true ); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:951:20: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 951 | x -> dad . var = eConstExpr; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/atomic32.h:51:39: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 51 | ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) ) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:952:5: note: in expansion of macro 'atomic32_set' 952 | atomic32_set ( & x -> dad . refcount, 1 ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:953:23: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 953 | x -> td . type_id = VSchemaCacheIntrinsicTypeId ( self, & s_bool_id, "bool" ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:954:19: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 954 | x -> td . dim = 1; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'bool_expr', inlined from 'expression' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:1943:16: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:949:22: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 949 | x -> u . b [ 0 ] = ( t -> id == kw_true ); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:951:20: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 951 | x -> dad . var = eConstExpr; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64/atomic32.h:51:39: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 51 | ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) ) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:952:5: note: in expansion of macro 'atomic32_set' 952 | atomic32_set ( & x -> dad . refcount, 1 ); | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:953:23: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 953 | x -> td . type_id = VSchemaCacheIntrinsicTypeId ( self, & s_bool_id, "bool" ); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:954:19: warning: array subscript 'SConstExpr[0]' is partly outside array bounds of 'unsigned char[17]' [-Warray-bounds=] 954 | x -> td . dim = 1; | ~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-expr.c:944:21: note: object of size 17 allocated by 'malloc' 944 | SConstExpr *x = malloc ( sizeof * x - sizeof x -> u + sizeof x -> u . b [ 0 ] ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 77%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-eval.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-eval.c.o -MF CMakeFiles/wvdb.dir/schema-eval.c.o.d -o CMakeFiles/wvdb.dir/schema-eval.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-eval.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-eval.c: In function 'VSchemaCacheIntrinsicTypeId': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-eval.c:72:18: warning: variable 'prev' set but not used [-Wunused-but-set-variable] 72 | uint32_t prev; | ^~~~ [ 77%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-tbl.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-tbl.c.o -MF CMakeFiles/wvdb.dir/schema-tbl.c.o.d -o CMakeFiles/wvdb.dir/schema-tbl.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-tbl.c [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-view.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-view.c.o -MF CMakeFiles/wvdb.dir/schema-view.c.o.d -o CMakeFiles/wvdb.dir/schema-view.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-view.c [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-db.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-db.c.o -MF CMakeFiles/wvdb.dir/schema-db.c.o.d -o CMakeFiles/wvdb.dir/schema-db.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/schema-db.c [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-dump.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk 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-D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/cursor-cmn.c.o -MF CMakeFiles/wvdb.dir/cursor-cmn.c.o.d -o CMakeFiles/wvdb.dir/cursor-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-cmn.c [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/column-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/column-cmn.c.o -MF CMakeFiles/wvdb.dir/column-cmn.c.o.d -o CMakeFiles/wvdb.dir/column-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/column-cmn.c [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/prod-cmn.c.o -MF CMakeFiles/wvdb.dir/prod-cmn.c.o.d -o CMakeFiles/wvdb.dir/prod-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-cmn.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-cmn.c: In function 'VPivotProdRead': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-cmn.c:2135:18: warning: unused variable 'rowLen' [-Wunused-variable] 2135 | uint32_t rowLen = PageMapGetIdxRowInfo ( rowIdBlob -> pm, ( uint32_t ) ( * p_id - rowIdBlob -> start_id ), & elemNum, & repeat_count ); | ^~~~~~ [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-expr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/prod-expr.c.o -MF CMakeFiles/wvdb.dir/prod-expr.c.o.d -o CMakeFiles/wvdb.dir/prod-expr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-expr.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-func.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/prod-func.c.o -MF CMakeFiles/wvdb.dir/prod-func.c.o.d -o CMakeFiles/wvdb.dir/prod-func.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c In function 'VProdResolveBuildFactParms', inlined from 'VProdResolveFuncExpr' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c:756:26: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c:664:38: warning: array subscript 17 is above array bounds of 'struct [16]' [-Warray-bounds=] 664 | cxp = ( const SConstExpr** ) & fp -> argv [ count ]; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:31, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-priv.h:39, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-func.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/vdb/xform.h: In function 'VProdResolveFuncExpr': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/vdb/xform.h:673:7: note: while referencing 'argv' 673 | } argv [ 16 ]; | ^~~~ [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/phys-cmn.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/phys-cmn.c.o -MF CMakeFiles/wvdb.dir/phys-cmn.c.o.d -o CMakeFiles/wvdb.dir/phys-cmn.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/phys-cmn.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/phys-load.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/phys-load.c.o -MF CMakeFiles/wvdb.dir/phys-load.c.o.d -o CMakeFiles/wvdb.dir/phys-load.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/phys-load.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/blob.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/blob.c.o -MF CMakeFiles/wvdb.dir/blob.c.o.d -o CMakeFiles/wvdb.dir/blob.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/blob.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/blob-headers.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/blob-headers.c.o -MF CMakeFiles/wvdb.dir/blob-headers.c.o.d -o CMakeFiles/wvdb.dir/blob-headers.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/blob-headers.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/page-map.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/page-map.c.o -MF CMakeFiles/wvdb.dir/page-map.c.o.d -o CMakeFiles/wvdb.dir/page-map.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/page-map.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/row-id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/row-id.c.o -MF CMakeFiles/wvdb.dir/row-id.c.o.d -o CMakeFiles/wvdb.dir/row-id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/row-id.c [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/row-len.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/row-len.c.o -MF CMakeFiles/wvdb.dir/row-len.c.o.d -o CMakeFiles/wvdb.dir/row-len.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/row-len.c [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/fixed-row-len.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/fixed-row-len.c.o -MF CMakeFiles/wvdb.dir/fixed-row-len.c.o.d -o CMakeFiles/wvdb.dir/fixed-row-len.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/fixed-row-len.c [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/merge.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/merge.c.o -MF CMakeFiles/wvdb.dir/merge.c.o.d -o CMakeFiles/wvdb.dir/merge.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c:34: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c: In function 'vdb_merge_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/merge.c:213:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 213 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = vdb_merge_impl; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/split.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/split.c.o -MF CMakeFiles/wvdb.dir/split.c.o.d -o CMakeFiles/wvdb.dir/split.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/prod-priv.h:39, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c:33: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c: In function 'vdb_split_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/split.c:394:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 394 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = split_impl; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/compare.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/compare.c.o -MF CMakeFiles/wvdb.dir/compare.c.o.d -o CMakeFiles/wvdb.dir/compare.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c: In function 'vdb_compare_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:189:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 189 | VFUNCDESC_INTERNAL_FUNCS(rslt)->cf = blob_compare_f32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:200:17: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 200 | if (VFUNCDESC_INTERNAL_FUNCS(rslt)->cf) { | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:218:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 218 | VFUNCDESC_INTERNAL_FUNCS(rslt)->cf = blob_compare; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c: In function 'vdb_no_compare_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/compare.c:240:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 240 | VFUNCDESC_INTERNAL_FUNCS(rslt)->cf = true_func; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/meta-read.c.o -MF CMakeFiles/wvdb.dir/meta-read.c.o.d -o CMakeFiles/wvdb.dir/meta-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/meta-read.c [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-value.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/meta-value.c.o -MF CMakeFiles/wvdb.dir/meta-value.c.o.d -o CMakeFiles/wvdb.dir/meta-value.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/meta-value.c [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-attr-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/meta-attr-read.c.o -MF CMakeFiles/wvdb.dir/meta-attr-read.c.o.d -o CMakeFiles/wvdb.dir/meta-attr-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/meta-attr-read.c [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cast.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/cast.c.o -MF CMakeFiles/wvdb.dir/cast.c.o.d -o CMakeFiles/wvdb.dir/cast.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c:29: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c: In function 'vdb_cast_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cast.c:487:13: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 487 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = copy; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/range-validate.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/range-validate.c.o -MF CMakeFiles/wvdb.dir/range-validate.c.o.d -o CMakeFiles/wvdb.dir/range-validate.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c: In function 'vdb_range_validate_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:134:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 134 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:139:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 139 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:144:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 144 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:149:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 149 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_I64; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:158:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 158 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:163:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 163 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:168:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 168 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:173:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 173 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_U64; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:182:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 182 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_F32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/range-validate.c:187:21: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 187 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = valid_F64; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/parameter-read.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/parameter-read.c.o -MF CMakeFiles/wvdb.dir/parameter-read.c.o.d -o CMakeFiles/wvdb.dir/parameter-read.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/parameter-read.c [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/redimension.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/redimension.c.o -MF CMakeFiles/wvdb.dir/redimension.c.o.d -o CMakeFiles/wvdb.dir/redimension.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c:33: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c: In function 'vdb_redimension_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/redimension.c:104:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 104 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = redimension_drvr; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/index_project.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/index_project.c.o -MF CMakeFiles/wvdb.dir/index_project.c.o.d -o CMakeFiles/wvdb.dir/index_project.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c:33: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c: In function 'idx_text_project_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_project.c:211:17: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 211 | VFUNCDESC_INTERNAL_FUNCS(rslt)->bfN = index_project_impl; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/index_lookup.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/index_lookup.c.o -MF CMakeFiles/wvdb.dir/index_lookup.c.o.d -o CMakeFiles/wvdb.dir/index_lookup.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_lookup.c [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/transpose.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/transpose.c.o -MF CMakeFiles/wvdb.dir/transpose.c.o.d -o CMakeFiles/wvdb.dir/transpose.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c: In function 'vdb_detranspose_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:360:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 360 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:363:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 363 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:366:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 366 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:369:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 369 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_formatted64; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c: In function 'vdb_transpose_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:703:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 703 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted8; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:706:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 706 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted16; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:709:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 709 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted32; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/transpose.c:712:9: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 712 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = transpose_unformatted64; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/delta_average.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/delta_average.c.o -MF CMakeFiles/wvdb.dir/delta_average.c.o.d -o CMakeFiles/wvdb.dir/delta_average.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c:32: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c: In function 'vdb_undelta_average_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c:199:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 199 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = undelta_average; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c: In function 'vdb_delta_average_fact': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/xform-priv.h:74:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 74 | ( ( union VFuncDescInternalFuncs * ) ( & ( DESC ) -> u ) ) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/delta_average.c:295:5: note: in expansion of macro 'VFUNCDESC_INTERNAL_FUNCS' 295 | VFUNCDESC_INTERNAL_FUNCS ( rslt ) -> bfN = delta_average; | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/report-vdb.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/report-vdb.c.o -MF CMakeFiles/wvdb.dir/report-vdb.c.o.d -o CMakeFiles/wvdb.dir/report-vdb.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/report-vdb.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/bytecode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/bytecode.c.o -MF CMakeFiles/wvdb.dir/bytecode.c.o.d -o CMakeFiles/wvdb.dir/bytecode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/bytecode.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/view.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/view.c.o -MF CMakeFiles/wvdb.dir/view.c.o.d -o CMakeFiles/wvdb.dir/view.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/view.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cursor-view.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/cursor-view.c.o -MF CMakeFiles/wvdb.dir/cursor-view.c.o.d -o CMakeFiles/wvdb.dir/cursor-view.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-view.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cursor-table.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/cursor-table.c.o -MF CMakeFiles/wvdb.dir/cursor-table.c.o.d -o CMakeFiles/wvdb.dir/cursor-table.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-table.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-table.c: In function 'VCursorParamsLookupOrCreate': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/cursor-table.c:1957:10: warning: variable 'rc' set but not used [-Wunused-but-set-variable] 1957 | rc_t rc; | ^~ [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wdbmgr.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/wdbmgr.c.o -MF CMakeFiles/wvdb.dir/wdbmgr.c.o.d -o CMakeFiles/wvdb.dir/wdbmgr.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/wdbmgr.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wlinker.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/wlinker.c.o -MF CMakeFiles/wvdb.dir/wlinker.c.o.d -o CMakeFiles/wvdb.dir/wlinker.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/wlinker.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wdatabase.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/wdatabase.c.o -MF CMakeFiles/wvdb.dir/wdatabase.c.o.d -o CMakeFiles/wvdb.dir/wdatabase.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/wdatabase.c [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wtable.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vdb/CMakeFiles/wvdb.dir/index_insert.c.o -MF CMakeFiles/wvdb.dir/index_insert.c.o.d -o CMakeFiles/wvdb.dir/index_insert.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vdb/index_insert.c [ 85%] Linking C static library ../../ilib/libwvdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vdb && /usr/bin/cmake -P 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"CMakeFiles/wvdb.dir/table-load.c.o" "CMakeFiles/wvdb.dir/cursor-cmn.c.o" "CMakeFiles/wvdb.dir/column-cmn.c.o" "CMakeFiles/wvdb.dir/prod-cmn.c.o" "CMakeFiles/wvdb.dir/prod-expr.c.o" "CMakeFiles/wvdb.dir/prod-func.c.o" "CMakeFiles/wvdb.dir/phys-cmn.c.o" "CMakeFiles/wvdb.dir/phys-load.c.o" CMakeFiles/wvdb.dir/blob.c.o "CMakeFiles/wvdb.dir/blob-headers.c.o" "CMakeFiles/wvdb.dir/page-map.c.o" "CMakeFiles/wvdb.dir/row-id.c.o" "CMakeFiles/wvdb.dir/row-len.c.o" "CMakeFiles/wvdb.dir/fixed-row-len.c.o" CMakeFiles/wvdb.dir/merge.c.o CMakeFiles/wvdb.dir/split.c.o CMakeFiles/wvdb.dir/compare.c.o "CMakeFiles/wvdb.dir/meta-read.c.o" "CMakeFiles/wvdb.dir/meta-value.c.o" "CMakeFiles/wvdb.dir/meta-attr-read.c.o" CMakeFiles/wvdb.dir/cast.c.o "CMakeFiles/wvdb.dir/range-validate.c.o" "CMakeFiles/wvdb.dir/parameter-read.c.o" CMakeFiles/wvdb.dir/redimension.c.o CMakeFiles/wvdb.dir/index_project.c.o CMakeFiles/wvdb.dir/index_lookup.c.o CMakeFiles/wvdb.dir/transpose.c.o CMakeFiles/wvdb.dir/delta_average.c.o "CMakeFiles/wvdb.dir/report-vdb.c.o" CMakeFiles/wvdb.dir/bytecode.c.o CMakeFiles/wvdb.dir/view.c.o "CMakeFiles/wvdb.dir/cursor-view.c.o" "CMakeFiles/wvdb.dir/cursor-table.c.o" CMakeFiles/wvdb.dir/wdbmgr.c.o CMakeFiles/wvdb.dir/wlinker.c.o CMakeFiles/wvdb.dir/wdatabase.c.o CMakeFiles/wvdb.dir/wtable.c.o CMakeFiles/wvdb.dir/wcursor.c.o CMakeFiles/wvdb.dir/wcolumn.c.o CMakeFiles/wvdb.dir/wprod.c.o CMakeFiles/wvdb.dir/wphys.c.o "CMakeFiles/wvdb.dir/meta-write.c.o" "CMakeFiles/wvdb.dir/meta-attr-write.c.o" "CMakeFiles/wvdb.dir/meta-append.c.o" CMakeFiles/wvdb.dir/index_insert.c.o /usr/bin/ranlib ../../ilib/libwvdb.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target wvdb make -f libs/vfs/CMakeFiles/vfs.dir/build.make libs/vfs/CMakeFiles/vfs.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs/CMakeFiles/vfs.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/vfs/CMakeFiles/vfs.dir/build.make libs/vfs/CMakeFiles/vfs.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/jwt.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/jwt.c.o -MF CMakeFiles/vfs.dir/jwt.c.o.d -o CMakeFiles/vfs.dir/jwt.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/jwt.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/names4-response.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/names4-response.c.o -MF CMakeFiles/vfs.dir/names4-response.c.o.d -o CMakeFiles/vfs.dir/names4-response.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/names4-response.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/names4-response.c: In function 'FileAddLinks': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/names4-response.c:1607:22: warning: variable 'error' set but not used [-Wunused-but-set-variable] 1607 | const char * error = "warning"; | ^~~~~ [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/manager.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/manager.c.o -MF CMakeFiles/vfs.dir/manager.c.o.d -o CMakeFiles/vfs.dir/manager.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/manager.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/remote-services.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/remote-services.c.o -MF CMakeFiles/vfs.dir/remote-services.c.o.d -o CMakeFiles/vfs.dir/remote-services.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/remote-services.c In file included from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/../kns/tls-priv.h:40, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/../kns/mgr-priv.h:43, from /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/remote-services.c:64: /usr/include/mbedtls/net.h:21:2: warning: #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" [-Wcpp] 21 | #warning "Deprecated header file: Superseded by mbedtls/net_sockets.h" | ^~~~~~~ [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/resolver.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/resolver.c.o -MF CMakeFiles/vfs.dir/resolver.c.o.d -o CMakeFiles/vfs.dir/resolver.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/resolver.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/resolver-3.0.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/resolver-3.0.c.o -MF CMakeFiles/vfs.dir/resolver-3.0.c.o.d -o CMakeFiles/vfs.dir/resolver-3.0.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/resolver-3.0.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/sdl-response.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/sdl-response.c.o -MF CMakeFiles/vfs.dir/sdl-response.c.o.d -o CMakeFiles/vfs.dir/sdl-response.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/sdl-response.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/services.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/services.c.o -MF CMakeFiles/vfs.dir/services.c.o.d -o CMakeFiles/vfs.dir/services.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/services.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/services-cache.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/services-cache.c.o -MF CMakeFiles/vfs.dir/services-cache.c.o.d -o CMakeFiles/vfs.dir/services-cache.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/services-cache.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/SraDesc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/SraDesc.c.o -MF CMakeFiles/vfs.dir/SraDesc.c.o.d -o CMakeFiles/vfs.dir/SraDesc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/SraDesc.c In function 'SraDescLoadBin', inlined from 'SraDescLoadPath' at /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/SraDesc.c:253:14: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/SraDesc.c:142:20: warning: 'n.u' may be used uninitialized [-Wmaybe-uninitialized] 142 | self->_size = n.u; | ~^~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/SraDesc.c: In function 'SraDescLoadPath': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/SraDesc.c:103:7: note: 'n' declared here 103 | } n; | ^ [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/srv-response.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/srv-response.c.o -MF CMakeFiles/vfs.dir/srv-response.c.o.d -o CMakeFiles/vfs.dir/srv-response.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/srv-response.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/path.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/path.c.o -MF CMakeFiles/vfs.dir/path.c.o.d -o CMakeFiles/vfs.dir/path.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/path.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/unix/syskeyring.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/unix/syskeyring.c.o -MF CMakeFiles/vfs.dir/unix/syskeyring.c.o.d -o CMakeFiles/vfs.dir/unix/syskeyring.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/unix/syskeyring.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/unix/syspath.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vfs/CMakeFiles/vfs.dir/unix/syspath.c.o -MF CMakeFiles/vfs.dir/unix/syspath.c.o.d -o CMakeFiles/vfs.dir/unix/syspath.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vfs/unix/syspath.c [ 87%] Linking C static library ../../ilib/libvfs.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cmake -P CMakeFiles/vfs.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vfs && /usr/bin/cmake -E cmake_link_script CMakeFiles/vfs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvfs.a CMakeFiles/vfs.dir/jwt.c.o "CMakeFiles/vfs.dir/names4-response.c.o" CMakeFiles/vfs.dir/manager.c.o "CMakeFiles/vfs.dir/remote-services.c.o" CMakeFiles/vfs.dir/resolver.c.o "CMakeFiles/vfs.dir/resolver-3.0.c.o" "CMakeFiles/vfs.dir/sdl-response.c.o" CMakeFiles/vfs.dir/services.c.o "CMakeFiles/vfs.dir/services-cache.c.o" CMakeFiles/vfs.dir/SraDesc.c.o "CMakeFiles/vfs.dir/srv-response.c.o" CMakeFiles/vfs.dir/path.c.o CMakeFiles/vfs.dir/unix/syskeyring.c.o CMakeFiles/vfs.dir/unix/syspath.c.o /usr/bin/ranlib ../../ilib/libvfs.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target vfs make -f libs/vxf/CMakeFiles/vxf.dir/build.make libs/vxf/CMakeFiles/vxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf/CMakeFiles/vxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/vxf/CMakeFiles/vxf.dir/build.make libs/vxf/CMakeFiles/vxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/ceil.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/ceil.c.o -MF CMakeFiles/vxf.dir/ceil.c.o.d -o CMakeFiles/vxf.dir/ceil.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/ceil.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/clip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/clip.c.o -MF CMakeFiles/vxf.dir/clip.c.o.d -o CMakeFiles/vxf.dir/clip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/clip.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/cut.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/cut.c.o -MF CMakeFiles/vxf.dir/cut.c.o.d -o CMakeFiles/vxf.dir/cut.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/cut.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/echo.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/echo.c.o -MF CMakeFiles/vxf.dir/echo.c.o.d -o CMakeFiles/vxf.dir/echo.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/echo.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/exists.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/exists.c.o -MF CMakeFiles/vxf.dir/exists.c.o.d -o CMakeFiles/vxf.dir/exists.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/exists.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/floor.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/paste.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/round.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/round.c.o -MF CMakeFiles/vxf.dir/round.c.o.d -o CMakeFiles/vxf.dir/round.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/round.c [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/trunc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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-ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/map.c.o -MF CMakeFiles/vxf.dir/map.c.o.d -o CMakeFiles/vxf.dir/map.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/map.c [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/funzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/vec-sum.c [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/min.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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-ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/pack.c.o -MF CMakeFiles/vxf.dir/pack.c.o.d -o CMakeFiles/vxf.dir/pack.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/pack.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/unpack.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/unpack.c.o -MF CMakeFiles/vxf.dir/unpack.c.o.d -o CMakeFiles/vxf.dir/unpack.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/unpack.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/izip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/izip.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/iunzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/iunzip.c.o -MF CMakeFiles/vxf.dir/iunzip.c.o.d -o CMakeFiles/vxf.dir/iunzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/iunzip.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/diff.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/diff.c.o -MF CMakeFiles/vxf.dir/diff.c.o.d -o CMakeFiles/vxf.dir/diff.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/diff.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/sum.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sum.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/bit_or.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/bit_or.c.o -MF CMakeFiles/vxf.dir/bit_or.c.o.d -o CMakeFiles/vxf.dir/bit_or.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/bit_or.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/trim.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/trim.c.o -MF CMakeFiles/vxf.dir/trim.c.o.d -o CMakeFiles/vxf.dir/trim.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/trim.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/deriv.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/deriv.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/integral.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/integral.c.o -MF CMakeFiles/vxf.dir/integral.c.o.d -o CMakeFiles/vxf.dir/integral.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/integral.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/integral_0.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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CMakeFiles/vxf.dir/delta.c.o.d -o CMakeFiles/vxf.dir/delta.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/delta.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/undelta.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/undelta.c.o -MF CMakeFiles/vxf.dir/undelta.c.o.d -o CMakeFiles/vxf.dir/undelta.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/undelta.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/add-row-id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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CMakeFiles/vxf.dir/subtract-row-id.c.o.d -o CMakeFiles/vxf.dir/subtract-row-id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/subtract-row-id.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/irzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/irzip.c.o -MF CMakeFiles/vxf.dir/irzip.c.o.d -o CMakeFiles/vxf.dir/irzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/irzip.c [ 92%] Building C object libs/vxf/CMakeFiles/vxf.dir/rand_4na_2na.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/outlier-decoder.c.o -MF CMakeFiles/vxf.dir/outlier-decoder.c.o.d -o CMakeFiles/vxf.dir/outlier-decoder.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/outlier-decoder.c [ 92%] Building C object libs/vxf/CMakeFiles/vxf.dir/bunzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY 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92%] Building C object libs/vxf/CMakeFiles/vxf.dir/simple-sub-select.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/simple-sub-select.c.o -MF CMakeFiles/vxf.dir/simple-sub-select.c.o.d -o CMakeFiles/vxf.dir/simple-sub-select.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/simple-sub-select.c [ 92%] Building C object libs/vxf/CMakeFiles/vxf.dir/extract_token.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/extract_token.c.o -MF CMakeFiles/vxf.dir/extract_token.c.o.d -o CMakeFiles/vxf.dir/extract_token.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/extract_token.c [ 92%] Building C object libs/vxf/CMakeFiles/vxf.dir/strtonum.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG 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CMakeFiles/vxf.dir/strtonum.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/strtonum.c [ 93%] Building C object libs/vxf/CMakeFiles/vxf.dir/sprintf.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/sprintf.c.o -MF CMakeFiles/vxf.dir/sprintf.c.o.d -o CMakeFiles/vxf.dir/sprintf.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c: In function 'sprintf_func': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:340:34: warning: 'ext_start_index' may be used uninitialized [-Wmaybe-uninitialized] 340 | start_idx = args [ ext_start_index ] . u = row_len - 1; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:207:18: note: 'ext_start_index' was declared here 207 | uint32_t ext_start_index, ext_stop_index; | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:344:35: warning: 'ext_stop_index' may be used uninitialized [-Wmaybe-uninitialized] 344 | select_len = args [ ext_stop_index ] . u = row_len - 1; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:207:35: note: 'ext_stop_index' was declared here 207 | uint32_t ext_start_index, ext_stop_index; | ^~~~~~~~~~~~~~ [ 93%] Building C object libs/vxf/CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o -MF CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o.d -o CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/wgs-tokenize-accession.c [ 93%] Building C object libs/vxf/CMakeFiles/vxf.dir/lower-case-tech-reads.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/lower-case-tech-reads.c.o -MF CMakeFiles/vxf.dir/lower-case-tech-reads.c.o.d -o CMakeFiles/vxf.dir/lower-case-tech-reads.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/lower-case-tech-reads.c [ 93%] Building C object libs/vxf/CMakeFiles/vxf.dir/unzstd.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/vxf.dir/unzstd.c.o -MF CMakeFiles/vxf.dir/unzstd.c.o.d -o CMakeFiles/vxf.dir/unzstd.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/unzstd.c [ 93%] Linking C static library ../../ilib/libvxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cmake -P CMakeFiles/vxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cmake -E cmake_link_script CMakeFiles/vxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvxf.a CMakeFiles/vxf.dir/ceil.c.o CMakeFiles/vxf.dir/clip.c.o CMakeFiles/vxf.dir/cut.c.o CMakeFiles/vxf.dir/echo.c.o CMakeFiles/vxf.dir/exists.c.o CMakeFiles/vxf.dir/floor.c.o CMakeFiles/vxf.dir/paste.c.o CMakeFiles/vxf.dir/round.c.o CMakeFiles/vxf.dir/trunc.c.o CMakeFiles/vxf.dir/unzip.c.o CMakeFiles/vxf.dir/map.c.o CMakeFiles/vxf.dir/funzip.c.o "CMakeFiles/vxf.dir/vec-sum.c.o" CMakeFiles/vxf.dir/min.c.o CMakeFiles/vxf.dir/max.c.o CMakeFiles/vxf.dir/rldecode.c.o CMakeFiles/vxf.dir/pack.c.o CMakeFiles/vxf.dir/unpack.c.o CMakeFiles/vxf.dir/izip.c.o CMakeFiles/vxf.dir/iunzip.c.o CMakeFiles/vxf.dir/diff.c.o CMakeFiles/vxf.dir/sum.c.o CMakeFiles/vxf.dir/bit_or.c.o CMakeFiles/vxf.dir/trim.c.o CMakeFiles/vxf.dir/deriv.c.o CMakeFiles/vxf.dir/integral.c.o CMakeFiles/vxf.dir/integral_0.c.o CMakeFiles/vxf.dir/delta.c.o CMakeFiles/vxf.dir/undelta.c.o "CMakeFiles/vxf.dir/add-row-id.c.o" "CMakeFiles/vxf.dir/subtract-row-id.c.o" CMakeFiles/vxf.dir/irzip.c.o CMakeFiles/vxf.dir/rand_4na_2na.c.o "CMakeFiles/vxf.dir/outlier-encoder.c.o" "CMakeFiles/vxf.dir/outlier-decoder.c.o" CMakeFiles/vxf.dir/bunzip.c.o "CMakeFiles/vxf.dir/simple-sub-select.c.o" CMakeFiles/vxf.dir/extract_token.c.o CMakeFiles/vxf.dir/strtonum.c.o CMakeFiles/vxf.dir/sprintf.c.o "CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o" "CMakeFiles/vxf.dir/lower-case-tech-reads.c.o" CMakeFiles/vxf.dir/unzstd.c.o /usr/bin/ranlib ../../ilib/libvxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target vxf make -f libs/vxf/CMakeFiles/wvxf.dir/build.make libs/vxf/CMakeFiles/wvxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf/CMakeFiles/wvxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/vxf/CMakeFiles/wvxf.dir/build.make libs/vxf/CMakeFiles/wvxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/ceil.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/ceil.c.o -MF CMakeFiles/wvxf.dir/ceil.c.o.d -o CMakeFiles/wvxf.dir/ceil.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/ceil.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/clip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/clip.c.o -MF CMakeFiles/wvxf.dir/clip.c.o.d -o CMakeFiles/wvxf.dir/clip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/clip.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/cut.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/cut.c.o -MF CMakeFiles/wvxf.dir/cut.c.o.d -o CMakeFiles/wvxf.dir/cut.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/cut.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/echo.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/echo.c.o -MF CMakeFiles/wvxf.dir/echo.c.o.d -o CMakeFiles/wvxf.dir/echo.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/echo.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/exists.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/exists.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/floor.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/round.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/trunc.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/trunc.c.o -MF CMakeFiles/wvxf.dir/trunc.c.o.d -o CMakeFiles/wvxf.dir/trunc.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/trunc.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/unzip.c.o -MF CMakeFiles/wvxf.dir/unzip.c.o.d -o CMakeFiles/wvxf.dir/unzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/unzip.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/map.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/map.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/funzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/funzip.c.o -MF CMakeFiles/wvxf.dir/funzip.c.o.d -o CMakeFiles/wvxf.dir/funzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/funzip.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/vec-sum.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/vec-sum.c.o -MF CMakeFiles/wvxf.dir/vec-sum.c.o.d -o CMakeFiles/wvxf.dir/vec-sum.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/vec-sum.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/min.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/min.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/max.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/rldecode.c.o -MF CMakeFiles/wvxf.dir/rldecode.c.o.d -o CMakeFiles/wvxf.dir/rldecode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/rldecode.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/pack.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/pack.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unpack.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/unpack.c.o -MF CMakeFiles/wvxf.dir/unpack.c.o.d -o CMakeFiles/wvxf.dir/unpack.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/unpack.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/izip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/izip.c.o -MF CMakeFiles/wvxf.dir/izip.c.o.d -o CMakeFiles/wvxf.dir/izip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/izip.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/iunzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/iunzip.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/diff.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/diff.c.o -MF CMakeFiles/wvxf.dir/diff.c.o.d -o CMakeFiles/wvxf.dir/diff.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/diff.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/sum.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/sum.c.o -MF CMakeFiles/wvxf.dir/sum.c.o.d -o CMakeFiles/wvxf.dir/sum.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sum.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bit_or.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/bit_or.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/trim.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/trim.c.o -MF CMakeFiles/wvxf.dir/trim.c.o.d -o CMakeFiles/wvxf.dir/trim.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/trim.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/deriv.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/deriv.c.o -MF CMakeFiles/wvxf.dir/deriv.c.o.d -o CMakeFiles/wvxf.dir/deriv.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/deriv.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/integral.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX 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CMakeFiles/wvxf.dir/undelta.c.o.d -o CMakeFiles/wvxf.dir/undelta.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/undelta.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/add-row-id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/add-row-id.c.o -MF CMakeFiles/wvxf.dir/add-row-id.c.o.d -o CMakeFiles/wvxf.dir/add-row-id.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/add-row-id.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/subtract-row-id.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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CMakeFiles/wvxf.dir/irzip.c.o.d -o CMakeFiles/wvxf.dir/irzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/irzip.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rand_4na_2na.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/rand_4na_2na.c.o -MF CMakeFiles/wvxf.dir/rand_4na_2na.c.o.d -o CMakeFiles/wvxf.dir/rand_4na_2na.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/rand_4na_2na.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/outlier-encoder.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/outlier-decoder.c.o -MF CMakeFiles/wvxf.dir/outlier-decoder.c.o.d -o CMakeFiles/wvxf.dir/outlier-decoder.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/outlier-decoder.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bunzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/bunzip.c.o -MF CMakeFiles/wvxf.dir/bunzip.c.o.d -o CMakeFiles/wvxf.dir/bunzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/bunzip.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/simple-sub-select.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/simple-sub-select.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/extract_token.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/extract_token.c.o -MF CMakeFiles/wvxf.dir/extract_token.c.o.d -o CMakeFiles/wvxf.dir/extract_token.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/extract_token.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/strtonum.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/strtonum.c.o -MF CMakeFiles/wvxf.dir/strtonum.c.o.d -o CMakeFiles/wvxf.dir/strtonum.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/strtonum.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/sprintf.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/sprintf.c.o -MF CMakeFiles/wvxf.dir/sprintf.c.o.d -o CMakeFiles/wvxf.dir/sprintf.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c: In function 'sprintf_func': /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:340:34: warning: 'ext_start_index' may be used uninitialized [-Wmaybe-uninitialized] 340 | start_idx = args [ ext_start_index ] . u = row_len - 1; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:207:18: note: 'ext_start_index' was declared here 207 | uint32_t ext_start_index, ext_stop_index; | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:344:35: warning: 'ext_stop_index' may be used uninitialized [-Wmaybe-uninitialized] 344 | select_len = args [ ext_stop_index ] . u = row_len - 1; | ^ /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/sprintf.c:207:35: note: 'ext_stop_index' was declared here 207 | uint32_t ext_start_index, ext_stop_index; | ^~~~~~~~~~~~~~ [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o -MF CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o.d -o CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/wgs-tokenize-accession.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext 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libs/vxf/CMakeFiles/wvxf.dir/unzstd.c.o -MF CMakeFiles/wvxf.dir/unzstd.c.o.d -o CMakeFiles/wvxf.dir/unzstd.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/unzstd.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/zip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/zip.c.o -MF CMakeFiles/wvxf.dir/zip.c.o.d -o CMakeFiles/wvxf.dir/zip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/zip.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bzip.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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libs/vxf/CMakeFiles/wvxf.dir/fzip.c.o -MF CMakeFiles/wvxf.dir/fzip.c.o.d -o CMakeFiles/wvxf.dir/fzip.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/fzip.c [ 99%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rlencode.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/rlencode.c.o -MF CMakeFiles/wvxf.dir/rlencode.c.o.d -o CMakeFiles/wvxf.dir/rlencode.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/rlencode.c [ 99%] Building C object libs/vxf/CMakeFiles/wvxf.dir/checksum.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os 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&& /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/vxf/CMakeFiles/wvxf.dir/zstd.c.o -MF CMakeFiles/wvxf.dir/zstd.c.o.d -o CMakeFiles/wvxf.dir/zstd.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/vxf/zstd.c [ 99%] Linking C static library ../../ilib/libwvxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cmake -P CMakeFiles/wvxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/vxf && /usr/bin/cmake -E cmake_link_script CMakeFiles/wvxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwvxf.a CMakeFiles/wvxf.dir/ceil.c.o CMakeFiles/wvxf.dir/clip.c.o CMakeFiles/wvxf.dir/cut.c.o CMakeFiles/wvxf.dir/echo.c.o CMakeFiles/wvxf.dir/exists.c.o CMakeFiles/wvxf.dir/floor.c.o CMakeFiles/wvxf.dir/paste.c.o CMakeFiles/wvxf.dir/round.c.o CMakeFiles/wvxf.dir/trunc.c.o CMakeFiles/wvxf.dir/unzip.c.o CMakeFiles/wvxf.dir/map.c.o CMakeFiles/wvxf.dir/funzip.c.o "CMakeFiles/wvxf.dir/vec-sum.c.o" CMakeFiles/wvxf.dir/min.c.o CMakeFiles/wvxf.dir/max.c.o CMakeFiles/wvxf.dir/rldecode.c.o CMakeFiles/wvxf.dir/pack.c.o CMakeFiles/wvxf.dir/unpack.c.o CMakeFiles/wvxf.dir/izip.c.o CMakeFiles/wvxf.dir/iunzip.c.o CMakeFiles/wvxf.dir/diff.c.o CMakeFiles/wvxf.dir/sum.c.o CMakeFiles/wvxf.dir/bit_or.c.o CMakeFiles/wvxf.dir/trim.c.o CMakeFiles/wvxf.dir/deriv.c.o CMakeFiles/wvxf.dir/integral.c.o CMakeFiles/wvxf.dir/integral_0.c.o CMakeFiles/wvxf.dir/delta.c.o CMakeFiles/wvxf.dir/undelta.c.o "CMakeFiles/wvxf.dir/add-row-id.c.o" "CMakeFiles/wvxf.dir/subtract-row-id.c.o" CMakeFiles/wvxf.dir/irzip.c.o CMakeFiles/wvxf.dir/rand_4na_2na.c.o "CMakeFiles/wvxf.dir/outlier-encoder.c.o" "CMakeFiles/wvxf.dir/outlier-decoder.c.o" CMakeFiles/wvxf.dir/bunzip.c.o "CMakeFiles/wvxf.dir/simple-sub-select.c.o" CMakeFiles/wvxf.dir/extract_token.c.o CMakeFiles/wvxf.dir/strtonum.c.o CMakeFiles/wvxf.dir/sprintf.c.o "CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o" "CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o" CMakeFiles/wvxf.dir/unzstd.c.o CMakeFiles/wvxf.dir/zip.c.o CMakeFiles/wvxf.dir/bzip.c.o CMakeFiles/wvxf.dir/fzip.c.o CMakeFiles/wvxf.dir/rlencode.c.o CMakeFiles/wvxf.dir/checksum.c.o CMakeFiles/wvxf.dir/zstd.c.o /usr/bin/ranlib ../../ilib/libwvxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target wvxf make -f libs/wgsxf/CMakeFiles/wgsxf.dir/build.make libs/wgsxf/CMakeFiles/wgsxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/wgsxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf/CMakeFiles/wgsxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/wgsxf/CMakeFiles/wgsxf.dir/build.make libs/wgsxf/CMakeFiles/wgsxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 99%] Building C object libs/wgsxf/CMakeFiles/wgsxf.dir/build_scaffold.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/wgsxf/CMakeFiles/wgsxf.dir/build_scaffold.c.o -MF CMakeFiles/wgsxf.dir/build_scaffold.c.o.d -o CMakeFiles/wgsxf.dir/build_scaffold.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/wgsxf/build_scaffold.c [ 99%] Building C object libs/wgsxf/CMakeFiles/wgsxf.dir/build_read_type.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/wgsxf/CMakeFiles/wgsxf.dir/build_read_type.c.o -MF CMakeFiles/wgsxf.dir/build_read_type.c.o.d -o CMakeFiles/wgsxf.dir/build_read_type.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/wgsxf/build_read_type.c [ 99%] Linking C static library ../../ilib/libwgsxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cmake -P CMakeFiles/wgsxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cmake -E cmake_link_script CMakeFiles/wgsxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwgsxf.a CMakeFiles/wgsxf.dir/build_scaffold.c.o CMakeFiles/wgsxf.dir/build_read_type.c.o /usr/bin/ranlib ../../ilib/libwgsxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target wgsxf make -f libs/wgsxf/CMakeFiles/wwgsxf.dir/build.make libs/wgsxf/CMakeFiles/wwgsxf.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/wgsxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf/CMakeFiles/wwgsxf.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make -f libs/wgsxf/CMakeFiles/wwgsxf.dir/build.make libs/wgsxf/CMakeFiles/wwgsxf.dir/build make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [ 99%] Building C object libs/wgsxf/CMakeFiles/wwgsxf.dir/build_scaffold.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/wgsxf/CMakeFiles/wwgsxf.dir/build_scaffold.c.o -MF CMakeFiles/wwgsxf.dir/build_scaffold.c.o.d -o CMakeFiles/wwgsxf.dir/build_scaffold.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/wgsxf/build_scaffold.c [ 99%] Building C object libs/wgsxf/CMakeFiles/wwgsxf.dir/build_read_type.c.o cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cc -DHAVE_QUADMATH -DHAVE_R128 -DHAVE_Z128 -DLINUX -DLONG_DOUBLE_IS_NOT_R128 -DNDEBUG -DPKGNAME=linux64 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/ext -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/cc/gcc/x86_64 -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/linux -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/os/unix -I/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/../ngs/ngs-sdk -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-vdb-3.0.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -rdynamic -Wall -MD -MT libs/wgsxf/CMakeFiles/wwgsxf.dir/build_read_type.c.o -MF CMakeFiles/wwgsxf.dir/build_read_type.c.o.d -o CMakeFiles/wwgsxf.dir/build_read_type.c.o -c /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/wgsxf/build_read_type.c [100%] Linking C static library ../../ilib/libwwgsxf.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cmake -P CMakeFiles/wwgsxf.dir/cmake_clean_target.cmake cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/wgsxf && /usr/bin/cmake -E cmake_link_script CMakeFiles/wwgsxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwwgsxf.a CMakeFiles/wwgsxf.dir/build_scaffold.c.o CMakeFiles/wwgsxf.dir/build_read_type.c.o /usr/bin/ranlib ../../ilib/libwwgsxf.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target wwgsxf make -f libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/build.make libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ncbi-vdb-3.0.2+dfsg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/libs/ncbi-vdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/DependInfo.cmake "--color=" make[4]: Leaving 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-f libncbi-vdb.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-vdb.a libncbi-vdb.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-vdb.a.3.0.2 libncbi-vdb.a.3 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-vdb.a.3 libncbi-vdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-vdb.a libncbi-vdb-static.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb && /usr/bin/cmake -E copy /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfg/ncbi/default.kfg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/bin/ncbi/default.kfg cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb && /usr/bin/cmake -E copy /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfg/ncbi/default.kfg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib/ncbi/default.kfg cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb && /usr/bin/cmake -E copy /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfg/ncbi/certs.kfg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/bin/ncbi/certs.kfg cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb && /usr/bin/cmake -E copy /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/interfaces/kfg/ncbi/certs.kfg /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib/ncbi/certs.kfg make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target ncbi-vdb make -f libs/ncbi-vdb/CMakeFiles/ncbi-vdb-shared.dir/build.make libs/ncbi-vdb/CMakeFiles/ncbi-vdb-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd 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../../lib/libncbi-wvdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-wvdb.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-wvdb.a libncbi-wvdb.a.3.0.2 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-wvdb.a.3.0.2 libncbi-wvdb.a.3 cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-wvdb.a.3 libncbi-wvdb.a cd /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-wvdb.a libncbi-wvdb-static.a make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target ncbi-wvdb make -f libs/ncbi-vdb/CMakeFiles/ncbi-wvdb-shared.dir/build.make libs/ncbi-vdb/CMakeFiles/ncbi-wvdb-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' cd 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/libs/ncbi-vdb && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-wvdb.so.3.0.2 ../../lib/libncbi-wvdb.so.3 ../../lib/libncbi-wvdb.so make[4]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target ncbi-wvdb-shared make[3]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' # we need to make really sure that no 'vdb_'-prefixed functions will remain ... if find . \( -name "*.so" -o -name "*.a" \) -exec strings \{\} \; | tee | grep -q vdb_mbedtls ; then \ find . \( -name "*.so" -o -name "*.a" \) -exec strings \{\} \; | tee | grep vdb_mbedtls ; \ grep -Rl vdb_mbedtls debian/tmp/* ; \ exit 1 ; \ false ; \ fi make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' make[1]: 'override_dh_auto_build-indep' is up to date. make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' # FIXME: some tests keep on failing despite debian/patches/skip_failing_test.patch - needs to be sorted out later dh_auto_test -- NO_VDB3=1 || true cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 NO_VDB3=1 make[2]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! make[2]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' make[1]: 'override_dh_auto_test-indep' is up to date. make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' dh_prep -Xdebian/tmp make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' mkdir -p debian/libncbi-vdb-dev/usr/include/ncbi-vdb cp -a interfaces/* debian/libncbi-vdb-dev/usr/include/ncbi-vdb # move schemata from development packages to library packages since these are used in executables mkdir -p debian/ncbi-vdb-data/usr/lib/ncbi-vdb for schema in `find debian/libncbi-vdb-dev/usr/include/ncbi-vdb -name "*.vschema"` ; do \ schemafile=`basename ${schema}` ; \ schemadir=`basename $(dirname ${schema})` ; \ mkdir -p debian/ncbi-vdb-data/usr/lib/ncbi-vdb/${schemadir} ; \ sed -i "s:^include ':&/usr/lib/ncbi-vdb/:" ${schema} ; \ mv ${schema} debian/ncbi-vdb-data/usr/lib/ncbi-vdb/${schemadir} ; \ done # Move around kfg files to the place where it used to be in version 2.x mv debian/libncbi-vdb-dev/usr/include/ncbi-vdb/kfg/ncbi debian/ncbi-vdb-data/usr/lib/ncbi-vdb/kfg touch debian/common-install-stamp dh_auto_install -- NO_VDB3=1 cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/ncbi-vdb-3.0.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" NO_VDB3=1 make[2]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ncbi-vdb-3.0.2+dfsg -B/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libktst.a.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libktst.a.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libktst.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libktst-static.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.a.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.a.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract-static.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libkapp.a.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libkapp.a.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libkapp.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libkapp-static.a mkdir: cannot create directory '/usr/lib64/ncbi': Permission denied mkdir: cannot create directory '/usr/lib64/ncbi': Permission denied cp: cannot create regular file '/usr/lib64/ncbi/default.kfg': No such file or directory mkdir: cannot create directory '/usr/lib64/ncbi': Permission denied cp: cannot create regular file '/usr/lib64/ncbi/certs.kfg': No such file or directory -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.a.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.a.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb-static.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.a.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.a.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb-static.a -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so.3.0.2 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so.3 -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/writer-sequence.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/writer-alignment.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/manager.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/pileup-stats.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/alignsrc.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/qstat.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/seq.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/refseq-mgr.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/unsupported_pileup_estimator.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/reader-refseq.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/samextract-lib.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/align.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/mate-cache.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/refseq.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/bam.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/samextract-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/align.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/writer-reference.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/iterator.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/reference.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/iterator_examples.txt -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/quality-quantizer.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/writer-refseq.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/dna-reverse-cmpl.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/align-access.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/writer-cmn.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/align/samextract-pool-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/manager.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/cloud-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/aws.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/cloud.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/impl.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/cloud/gcp.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/insdc -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/insdc/seq.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/insdc/sra.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/insdc/insdc.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/insdc/sra.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/insdc/insdc.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/manager.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/index.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/column.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/rowset-impl.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/database.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/meta.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/btree.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/rowset.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/consistency-check.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/namelist.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/table.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/kdb-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kdb/meta.hpp -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/properties.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/ncbi -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/ncbi/kfgsums -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/ncbi/certs.kfg -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/ncbi/default.kfg -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/repository.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/ngc.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/kfg-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/kart-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/keystore-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/keystore.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/config.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfg/kart.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/ptrie.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/base64.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/klib-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/progressbar.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/ncbi-vdb-version.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/defs.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/guid.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/container.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/data-buffer.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/checksum.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/rc.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/logfmt.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/log.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/pack.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/pbstree.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/sort.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/klib/misc.h -- Installing: 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kapp -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kapp/main.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kapp/args-conv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kapp/log-xml.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kapp/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kapp/args.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfc -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfc/refcount-impl.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfc/defs.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/kfc/except.h -- Installing: 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Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/seq.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/ksra-cgi.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/pnbrdb.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/seq-graph.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/stats.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/wgs-contig.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/spotname.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/varloc.vschema -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/ncbi/ncbi.h -- Installing: 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/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/blob.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/database.hpp -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/manager.hpp -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/schema.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/blob-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/extern.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/dependencies.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/page-map-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/types.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/quality.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/table.hpp -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/types.hpp -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/vdb.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/report.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/vdb-priv.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/table.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/cursor.h -- Installing: /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/include/vdb/xform.h make[2]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg/obj-x86_64-linux-gnu' find debian/tmp/usr/lib/x86_64-linux-gnu -name "*-static.a" -delete # upstream installs versioned *.a libs - we only want a single version for slib in debian/tmp/usr/lib/x86_64-linux-gnu/*.a ; do \ mv debian/tmp/usr/lib/x86_64-linux-gnu/`readlink $slib` $slib ; \ mv debian/tmp/usr/lib/x86_64-linux-gnu/`readlink $slib` $slib ; \ done d-shlibmove --commit --multiarch --devunversioned --exclude-la \ --movedev debian/tmp/usr/lib/x86_64-linux-gnu/libkapp.a usr/lib/x86_64-linux-gnu \ --movedev debian/tmp/usr/lib/x86_64-linux-gnu/libktst.a usr/lib/x86_64-linux-gnu \ --movedev obj-*/ilib/libkapp-norsrc.a usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so Library package automatic movement utility --> libbz2-dev package exists. --> libmbedtls-dev package exists. --> libzstd-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncbi-vdb3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.a debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so.3 debian/libncbi-vdb3/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so.3.0.2 debian/libncbi-vdb3/usr/lib/x86_64-linux-gnu PKGDEV=libncbi-vdb-dev PKGSHL=libncbi-vdb3 install -d -m 755 debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libkapp.a debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libktst.a debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu mv obj-x86_64-linux-gnu/ilib/libkapp-norsrc.a debian/libncbi-vdb-dev/usr/lib/x86_64-linux-gnu # json-response.h and services-priv.h are needed by sra-sdk, but # the latter shouldn't replace interfaces/vfs/services-priv.h. dh_install -plibncbi-vdb-dev libs/vfs/json-response.h usr/include/ncbi-vdb/vfs cp libs/vfs/services-priv.h debian/libncbi-vdb-dev/usr/include/ncbi-vdb/vfs/services-priv-internal.h d-shlibmove --commit --multiarch --devunversioned --exclude-la \ debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so Library package automatic movement utility --> libbz2-dev package exists. --> libmbedtls-dev package exists. --> libzstd-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libncbi-wvdb-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncbi-wvdb3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.a debian/libncbi-wvdb-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so debian/libncbi-wvdb-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so.3 debian/libncbi-wvdb3/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so.3.0.2 debian/libncbi-wvdb3/usr/lib/x86_64-linux-gnu PKGDEV=libncbi-wvdb-dev PKGSHL=libncbi-wvdb3 d-shlibmove --commit --multiarch --devunversioned --exclude-la \ debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so Library package automatic movement utility set -e install -d -m 755 debian/libsam-extract-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libsam-extract3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.a debian/libsam-extract-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so debian/libsam-extract-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so.3 debian/libsam-extract3/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/ncbi-vdb-3.0.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 debian/libsam-extract3/usr/lib/x86_64-linux-gnu PKGDEV=libsam-extract-dev PKGSHL=libsam-extract3 find debian/lib* -name .gitignore -delete make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' dh override_dh_auto_install-indep --buildsystem=cmake make[1]: Leaving directory '/build/reproducible-path/ncbi-vdb-3.0.2+dfsg' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: symbol KQueuePush used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol KThreadMakeStackSize used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateGetHeader used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol VectorAppend used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol KQueueRelease used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol VectorInit used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol zlibVersion used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol KLockAcquire used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol KThreadRelease used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: symbol VectorWhack used by debian/libsam-extract3/usr/lib/x86_64-linux-gnu/libsam-extract.so.3.0.2 found in none of the libraries dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libncbi-vdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libncbi-wvdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libsam-extract-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libncbi-wvdb-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libncbi-vdb-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libncbi-vdb3' in '../libncbi-vdb3_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libncbi-vdb3-dbgsym' in '../libncbi-vdb3-dbgsym_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'ncbi-vdb-data' in '../ncbi-vdb-data_3.0.2+dfsg-2_all.deb'. dpkg-deb: building package 'libncbi-vdb-dev' in '../libncbi-vdb-dev_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libncbi-wvdb3' in '../libncbi-wvdb3_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libncbi-wvdb3-dbgsym' in '../libncbi-wvdb3-dbgsym_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libncbi-wvdb-dev' in '../libncbi-wvdb-dev_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libsam-extract3' in '../libsam-extract3_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libsam-extract3-dbgsym' in '../libsam-extract3-dbgsym_3.0.2+dfsg-2_amd64.deb'. dpkg-deb: building package 'libsam-extract-dev' in '../libsam-extract-dev_3.0.2+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-vdb_3.0.2+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../ncbi-vdb_3.0.2+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1533399/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1533399 and its subdirectories I: Current time: Tue Jun 10 11:36:58 +14 2025 I: pbuilder-time-stamp: 1749505018