I: pbuilder: network access will be disabled during build I: Current time: Mon May 6 02:11:55 +14 2024 I: pbuilder-time-stamp: 1714911115 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nanosv_1.2.4+git20190409.c1ae30c-6.dsc] I: copying [./nanosv_1.2.4+git20190409.c1ae30c.orig.tar.xz] I: copying [./nanosv_1.2.4+git20190409.c1ae30c-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 24 22:09:09 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./nanosv_1.2.4+git20190409.c1ae30c-6.dsc: no acceptable signature found dpkg-source: info: extracting nanosv in nanosv-1.2.4+git20190409.c1ae30c dpkg-source: info: unpacking nanosv_1.2.4+git20190409.c1ae30c.orig.tar.xz dpkg-source: info: unpacking nanosv_1.2.4+git20190409.c1ae30c-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_setup.patch dpkg-source: info: applying python3_has_buildin_configparser.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/285696/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 5 12:12 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/285696/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/285696/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=4fb39cb20d2448f08485182993ae767c LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=285696 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WQ2N3wpS/pbuilderrc_px6h --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WQ2N3wpS/b2 --logfile b2/build.log nanosv_1.2.4+git20190409.c1ae30c-6.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 5 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/285696/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, help2man, python3-vcf dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3-vcf; however: Package python3-vcf is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3-vcf{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 38.9 MB of archives. After unpacking 175 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.3-1 [809 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.3-1 [2139 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 help2man amd64 1.49.3 [198 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 58 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.7.1-3 [432 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 74 http://deb.debian.org/debian trixie/main amd64 python3-pysam amd64 0.22.0+ds-1+b2 [4646 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 python3-vcf amd64 0.6.8+git20170215.476169c-10 [56.4 kB] Fetched 38.9 MB in 6s (6554 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20025 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21017 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. 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Setting up libcom-err2:amd64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 5 12:15:16 UTC 2024. Universal Time is now: Sun May 5 12:15:16 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up autopoint (0.21-14) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-pysam (0.22.0+ds-1+b2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up python3-vcf (0.6.8+git20170215.476169c-10) ... /usr/lib/python3/dist-packages/vcf/parser.py:278: SyntaxWarning: invalid escape sequence '\[' self._alt_pattern = re.compile('[\[\]]') /usr/lib/python3/dist-packages/vcf/parser.py:536: SyntaxWarning: invalid escape sequence '\[' remoteOrientation = (re.search('\[', str) is not None) Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.37-19) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/285696/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/285696/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nanosv_1.2.4+git20190409.c1ae30c-6_source.changes dpkg-buildpackage: info: source package nanosv dpkg-buildpackage: info: source version 1.2.4+git20190409.c1ae30c-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from nanosv-1.2.4+git20190409.c1ae30c/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_auto_clean pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running clean removing '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running clean removing '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -rf /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/python3-nanosv* rm -f /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/NanoSV.1 make[1]: Leaving directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/nanosv.substvars debian/files rm -fr -- debian/nanosv/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running build running build_py creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv copying nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv copying nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv copying nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils copying nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes copying nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/bedfiles copying nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/bedfiles I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running build running build_py creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv copying nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv copying nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv copying nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils copying nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes copying nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/bedfiles copying nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/bedfiles debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' echo "I: Do nothing" I: Do nothing make[1]: Leaving directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/nanosv.substvars rm -fr -- debian/.debhelper/generated/nanosv/ debian/nanosv/ debian/tmp/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_auto_install install -m0755 -d /build/reproducible-path/nanosv-1.2.4\+git20190409.c1ae30c/debian/nanosv pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/nanosv-1.2.4\+git20190409.c1ae30c/debian/nanosv I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12 creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/bedfiles copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/bedfiles copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.12_nanosv/build/nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/create_vcf.py to create_vcf.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/phasing.py to phasing.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_breakpoints.py to parse_breakpoints.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py to parse_bam.cpython-312.pyc /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:43: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:206: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:210: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:392: SyntaxWarning: invalid escape sequence '\^' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:416: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/nanosv/utils/parse_bam.py:418: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_svs.py to parse_svs.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/parse_reads.py to parse_reads.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/utils/coverage.py to coverage.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/read.py to read.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/variant.py to variant.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/segment.py to segment.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/breakpoint.py to breakpoint.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/classes/sv.py to sv.cpython-312.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/nanosv/NanoSV.py to NanoSV.cpython-312.pyc running install_egg_info running egg_info creating NanoSV.egg-info writing NanoSV.egg-info/PKG-INFO writing dependency_links to NanoSV.egg-info/dependency_links.txt writing entry points to NanoSV.egg-info/entry_points.txt writing requirements to NanoSV.egg-info/requires.txt writing top-level names to NanoSV.egg-info/top_level.txt writing manifest file 'NanoSV.egg-info/SOURCES.txt' reading manifest file 'NanoSV.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' adding license file 'LICENSE' writing manifest file 'NanoSV.egg-info/SOURCES.txt' Copying NanoSV.egg-info to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.12/dist-packages/NanoSV-1.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing NanoSV script to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'including_package_data' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11 creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/create_vcf.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/phasing.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_breakpoints.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_bam.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_svs.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/parse_reads.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/utils/coverage.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/config.ini -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/bedfiles copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/bedfiles/human_hg19.bed -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/bedfiles copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/version.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv creating /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/read.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/variant.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/segment.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/__init__.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/breakpoint.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/classes/sv.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes copying /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/.pybuild/cpython3_3.11_nanosv/build/nanosv/NanoSV.py -> /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/create_vcf.py to create_vcf.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/phasing.py to phasing.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_breakpoints.py to parse_breakpoints.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_bam.py to parse_bam.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_svs.py to parse_svs.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/parse_reads.py to parse_reads.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/utils/coverage.py to coverage.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/version.py to version.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/read.py to read.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/variant.py to variant.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/segment.py to segment.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/breakpoint.py to breakpoint.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/classes/sv.py to sv.cpython-311.pyc byte-compiling /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/nanosv/NanoSV.py to NanoSV.cpython-311.pyc running install_egg_info running egg_info writing NanoSV.egg-info/PKG-INFO writing dependency_links to NanoSV.egg-info/dependency_links.txt writing entry points to NanoSV.egg-info/entry_points.txt writing requirements to NanoSV.egg-info/requires.txt writing top-level names to NanoSV.egg-info/top_level.txt reading manifest file 'NanoSV.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' adding license file 'LICENSE' writing manifest file 'NanoSV.egg-info/SOURCES.txt' Copying NanoSV.egg-info to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/lib/python3.11/dist-packages/NanoSV-1.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing NanoSV script to /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/nanosv/usr/bin find /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian -name "*.bed" -o -name "*.ini" | xargs -r chmod -x PYTHONPATH=./debian/nanosv/usr/lib/python3.11/dist-packages/ help2man --include=debian/NanoSV.h2m ./debian/nanosv/usr/bin/NanoSV > /build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c/debian/NanoSV.1 make[1]: Leaving directory '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/nanosv/usr/share/doc/nanosv install -m0755 -d debian/nanosv/usr/share/doc/nanosv cp --reflink=auto -a ./README.md debian/nanosv/usr/share/doc/nanosv cp --reflink=auto -a ./debian/README.test debian/nanosv/usr/share/doc/nanosv cp --reflink=auto -a ./debian/tests/run-unit-test debian/nanosv/usr/share/doc/nanosv chmod -R u\+rw,go=rX debian/nanosv/usr/share/doc install -p -m0644 debian/copyright debian/nanosv/usr/share/doc/nanosv/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/nanosv/usr/share/doc/nanosv install -p -m0644 debian/.debhelper/generated/nanosv/dh_installchangelogs.dch.trimmed debian/nanosv/usr/share/doc/nanosv/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/nanosv/usr/share/man/man1/ install -p -m0644 ./debian/NanoSV.1 debian/nanosv/usr/share/man/man1/NanoSV.1 man-recode --to-code UTF-8 --suffix .dh-new debian/nanosv/usr/share/man/man1/NanoSV.1 mv debian/nanosv/usr/share/man/man1/NanoSV.1.dh-new debian/nanosv/usr/share/man/man1/NanoSV.1 chmod 0644 -- debian/nanosv/usr/share/man/man1/NanoSV.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:174: source=nanosv, binary packages=['nanosv'] D: dh_python3 dh_python3:204: processing package nanosv... D: dh_python3 fs:50: moving files from debian/nanosv/usr/lib/python3.11/dist-packages to debian/nanosv/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/nanosv/usr/lib/python3.12/dist-packages to debian/nanosv/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package nanosv details = {'requires.txt': {'debian/nanosv/usr/lib/python3/dist-packages/NanoSV-1.2.4.egg-info/requires.txt'}, 'egg-info': {'debian/nanosv/usr/lib/python3/dist-packages/NanoSV-1.2.4.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package nanosv D: dh_python3 pydist:173: trying to find dependency for pysam>=0.11 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pyvcf (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3:any', 'python3-vcf', 'python3-pysam'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/nanosv chmod a-x usr/share/doc/nanosv/README.md usr/share/doc/nanosv/changelog.Debian usr/share/man/man1/NanoSV.1 gzip -9nf usr/share/doc/nanosv/README.md usr/share/doc/nanosv/changelog.Debian usr/share/man/man1/NanoSV.1 cd '/build/reproducible-path/nanosv-1.2.4+git20190409.c1ae30c' dh_fixperms -O--buildsystem=pybuild find debian/nanosv ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/nanosv/usr/share/doc -type f -a -true -a ! -regex 'debian/nanosv/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nanosv/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/nanosv/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nanosv -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/nanosv/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/nanosv/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/nanosv/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/nanosv/DEBIAN/postinst cat debian/nanosv.postinst.debhelper >> debian/nanosv/DEBIAN/postinst chmod 0755 -- debian/nanosv/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/nanosv/DEBIAN/prerm cat debian/nanosv.prerm.debhelper >> debian/nanosv/DEBIAN/prerm chmod 0755 -- debian/nanosv/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/nanosv/DEBIAN echo misc:Depends= >> debian/nanosv.substvars echo misc:Pre-Depends= >> debian/nanosv.substvars dpkg-gencontrol -pnanosv -ldebian/changelog -Tdebian/nanosv.substvars -cdebian/control -Pdebian/nanosv chmod 0644 -- debian/nanosv/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/nanosv/DEBIAN cd debian/nanosv >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/nanosv/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/nanosv .. dpkg-deb: building package 'nanosv' in '../nanosv_1.2.4+git20190409.c1ae30c-6_all.deb'. dpkg-genbuildinfo --build=binary -O../nanosv_1.2.4+git20190409.c1ae30c-6_amd64.buildinfo dpkg-genchanges --build=binary -O../nanosv_1.2.4+git20190409.c1ae30c-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from nanosv-1.2.4+git20190409.c1ae30c/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/285696/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/285696/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/285696 and its subdirectories I: Current time: Mon May 6 02:18:59 +14 2024 I: pbuilder-time-stamp: 1714911539