I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 17 04:45:01 +14 2026 I: pbuilder-time-stamp: 1768574701 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libwfa2_2.3.3-4.dsc] I: copying [./libwfa2_2.3.3.orig.tar.gz] I: copying [./libwfa2_2.3.3-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Mar 23 11:54:56 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libwfa2_2.3.3-4.dsc: no acceptable signature found dpkg-source: info: extracting libwfa2 in libwfa2-2.3.3 dpkg-source: info: unpacking libwfa2_2.3.3.orig.tar.gz dpkg-source: info: unpacking libwfa2_2.3.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/800524/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 16 14:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/800524/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/800524/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=64645865a0984bfbb5166e8ed849c076 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=800524 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QNEnzhvV/pbuilderrc_cU9A --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QNEnzhvV/b2 --logfile b2/build.log libwfa2_2.3.3-4.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/800524/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, d-shlibs, cmake, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 37.3 MB of archives. After unpacking 138 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 28 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get: 43 http://deb.debian.org/debian trixie/main amd64 d-shlibs all 0.108 [11.0 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Fetched 37.3 MB in 3s (10.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-6_amd64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-12_amd64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../12-architecture-properties_0.2.3_amd64.deb ... Unpacking architecture-properties:amd64 (0.2.3) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_3.30.5-1_all.deb ... Unpacking cmake-data (3.30.5-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../19-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../20-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../21-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../23-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../24-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../25-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../26-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../27-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../29-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../30-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../31-libldap-2.5-0_2.5.18+dfsg-3+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../32-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../33-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../34-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../35-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../36-libcurl4t64_8.11.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.11.0-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../37-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.108) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.30.5-1) ... Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/800524/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/800524/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libwfa2-2.3.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libwfa2_2.3.3-4_source.changes dpkg-buildpackage: info: source package libwfa2 dpkg-buildpackage: info: source version 2.3.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libwfa2-2.3.3 -B/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make -f CMakeFiles/wfa2_static.dir/build.make CMakeFiles/wfa2_static.dir/depend make -f CMakeFiles/wfa2.dir/build.make CMakeFiles/wfa2.dir/depend make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/CMakeFiles/wfa2_static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/CMakeFiles/wfa2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make -f CMakeFiles/wfa2_static.dir/build.make CMakeFiles/wfa2_static.dir/build make -f CMakeFiles/wfa2.dir/build.make CMakeFiles/wfa2.dir/build make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' [ 1%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o [ 2%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o [ 3%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o [ 4%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o [ 5%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o [ 7%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -c /build/reproducible-path/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c [ 8%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o -c /build/reproducible-path/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c [ 10%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o [ 13%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o [ 13%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. 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-I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -c /build/reproducible-path/libwfa2-2.3.3/wavefront/wavefront_compute_edit.c [ 22%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o [ 21%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o [ 25%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o [ 26%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o [ 27%] Building C object 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-I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o -c /build/reproducible-path/libwfa2-2.3.3/wavefront/wavefront_compute_edit.c [ 48%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_allocator.c.o -MF CMakeFiles/wfa2.dir/system/mm_allocator.c.o.d -o CMakeFiles/wfa2.dir/system/mm_allocator.c.o -c /build/reproducible-path/libwfa2-2.3.3/system/mm_allocator.c [ 63%] Building C object CMakeFiles/wfa2.dir/utils/bitmap.c.o /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong 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-I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/heatmap.c.o -MF CMakeFiles/wfa2.dir/utils/heatmap.c.o.d -o CMakeFiles/wfa2.dir/utils/heatmap.c.o -c /build/reproducible-path/libwfa2-2.3.3/utils/heatmap.c [ 75%] Building C object CMakeFiles/wfa2.dir/utils/commons.c.o /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/commons.c.o -MF CMakeFiles/wfa2_static.dir/utils/commons.c.o.d -o CMakeFiles/wfa2_static.dir/utils/commons.c.o -c /build/reproducible-path/libwfa2-2.3.3/utils/commons.c /usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-DWFA2LIB_VERSION=\"v2.3\" -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o -MF CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o.d -o CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o -c /build/reproducible-path/libwfa2-2.3.3/alignment/score_matrix.c [ 94%] Linking C shared library libwfa2.so /usr/bin/cmake -E cmake_link_script CMakeFiles/wfa2.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libwfa2.so.0 -o libwfa2.so.0 CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o 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CMakeFiles/wfa2.dir/alignment/cigar.c.o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o [ 95%] Linking C static library libwfa2.a /usr/bin/cmake -E cmake_symlink_library libwfa2.so.0 libwfa2.so.0 libwfa2.so /usr/bin/cmake -P CMakeFiles/wfa2_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/wfa2_static.dir/link.txt --verbose=1 /usr/bin/ar qc libwfa2.a CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o CMakeFiles/wfa2_static.dir/system/mm_stack.c.o CMakeFiles/wfa2_static.dir/system/mm_allocator.c.o CMakeFiles/wfa2_static.dir/system/profiler_counter.c.o CMakeFiles/wfa2_static.dir/system/profiler_timer.c.o CMakeFiles/wfa2_static.dir/utils/bitmap.c.o CMakeFiles/wfa2_static.dir/utils/dna_text.c.o CMakeFiles/wfa2_static.dir/utils/sequence_buffer.c.o CMakeFiles/wfa2_static.dir/utils/vector.c.o CMakeFiles/wfa2_static.dir/utils/commons.c.o CMakeFiles/wfa2_static.dir/utils/heatmap.c.o CMakeFiles/wfa2_static.dir/utils/string_padded.c.o CMakeFiles/wfa2_static.dir/alignment/affine2p_penalties.c.o CMakeFiles/wfa2_static.dir/alignment/affine_penalties.c.o CMakeFiles/wfa2_static.dir/alignment/cigar.c.o CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' [ 95%] Built target wfa2 make -f CMakeFiles/wfa2cpp_static.dir/build.make CMakeFiles/wfa2cpp_static.dir/depend make -f CMakeFiles/wfa2cpp.dir/build.make CMakeFiles/wfa2cpp.dir/depend make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/CMakeFiles/wfa2cpp_static.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' cd /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3 /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/CMakeFiles/wfa2cpp.dir/DependInfo.cmake "--color=" /usr/bin/ranlib libwfa2.a make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make -f CMakeFiles/wfa2cpp.dir/build.make CMakeFiles/wfa2cpp.dir/build make -f CMakeFiles/wfa2cpp_static.dir/build.make CMakeFiles/wfa2cpp_static.dir/build make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' [ 96%] Building CXX object CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o /usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -c /build/reproducible-path/libwfa2-2.3.3/bindings/cpp/WFAligner.cpp [ 97%] Building CXX object CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o /usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2cpp_EXPORTS -I/build/reproducible-path/libwfa2-2.3.3/. -I/build/reproducible-path/libwfa2-2.3.3/wavefront -I/build/reproducible-path/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -c /build/reproducible-path/libwfa2-2.3.3/bindings/cpp/WFAligner.cpp make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' [ 97%] Built target wfa2_static [ 98%] Linking CXX static library libwfa2cpp.a /usr/bin/cmake -P CMakeFiles/wfa2cpp_static.dir/cmake_clean_target.cmake [100%] Linking CXX shared library libwfa2cpp.so /usr/bin/cmake -E cmake_link_script CMakeFiles/wfa2cpp.dir/link.txt --verbose=1 /usr/bin/cmake -E cmake_link_script CMakeFiles/wfa2cpp_static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libwfa2-2.3.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libwfa2cpp.so.0 -o libwfa2cpp.so.0 CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -Wl,-rpath,/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu: libwfa2.so.0 /usr/bin/ar qc libwfa2cpp.a CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o /usr/bin/ranlib libwfa2cpp.a make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' [100%] Built target wfa2cpp_static /usr/bin/cmake -E cmake_symlink_library libwfa2cpp.so.0 libwfa2cpp.so.0 libwfa2cpp.so make[3]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' [100%] Built target wfa2cpp make[2]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' dh_auto_test -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: wfa2lib 1: Test command: /build/reproducible-path/libwfa2-2.3.3/tests/wfa.utest.sh 1: Working Directory: /build/reproducible-path/libwfa2-2.3.3 1: Test timeout computed to be: 10000000 1: + BIN=./bin/align_benchmark 1: + INPUT=./tests/wfa.utest.seq 1: + OUTPUT=./tests 1: + LOG=./tests/wfa.utest.log 1: + rm './tests/*.alg' './tests/*.log*' 1: rm: cannot remove './tests/*.alg': No such file or directory 1: rm: cannot remove './tests/*.log*': No such file or directory 1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score" 1: + IFS=, 1: + set -- --check=correct test 1: + IFS=' ' 1: + MODE=--check=correct 1: + PREFIX=test 1: + echo '>>> Testing '\''test'\'' (--check=correct)' 1: >>> Testing 'test' (--check=correct) 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.indel.alg -a indel-wfa --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.edit.alg -a edit-wfa --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.alg -a gap-affine-wfa --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine2p.alg -a gap-affine2p-wfa --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p0.alg -a gap-affine-wfa --check=correct --affine-penalties=0,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p1.alg -a gap-affine-wfa --check=correct --affine-penalties=0,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p2.alg -a gap-affine-wfa --check=correct --affine-penalties=0,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p3.alg -a gap-affine-wfa --check=correct --affine-penalties=-5,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p4.alg -a gap-affine-wfa --check=correct --affine-penalties=-2,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p5.alg -a gap-affine-wfa --check=correct --affine-penalties=-3,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.wfapt0.alg -a gap-affine-wfa --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.wfapt1.alg -a gap-affine-wfa --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10 1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score" 1: + IFS=, 1: + set -- --wfa-score-only test.score 1: + IFS=' ' 1: + MODE=--wfa-score-only 1: + PREFIX=test.score 1: + echo '>>> Testing '\''test.score'\'' (--wfa-score-only)' 1: >>> Testing 'test.score' (--wfa-score-only) 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.indel.alg -a indel-wfa --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.edit.alg -a edit-wfa --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.alg -a gap-affine-wfa --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine2p.alg -a gap-affine2p-wfa --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p0.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p1.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p2.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p3.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-5,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p4.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-2,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p5.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-3,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.wfapt0.alg -a gap-affine-wfa --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.wfapt1.alg -a gap-affine-wfa --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10 1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score" 1: + IFS=, 1: + set -- '--wfa-memory-mode=med --check=correct' test.pb 1: + IFS=' ' 1: + MODE='--wfa-memory-mode=med --check=correct' 1: + PREFIX=test.pb 1: + echo '>>> Testing '\''test.pb'\'' (--wfa-memory-mode=med --check=correct)' 1: >>> Testing 'test.pb' (--wfa-memory-mode=med --check=correct) 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.indel.alg -a indel-wfa --wfa-memory-mode=med --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.edit.alg -a edit-wfa --wfa-memory-mode=med --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=med --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-5,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-2,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-3,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10 1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score" 1: + IFS=, 1: + set -- '--wfa-memory-mode=ultralow --check=correct' test.biwfa 1: + IFS=' ' 1: + MODE='--wfa-memory-mode=ultralow --check=correct' 1: + PREFIX=test.biwfa 1: + echo '>>> Testing '\''test.biwfa'\'' (--wfa-memory-mode=ultralow --check=correct)' 1: >>> Testing 'test.biwfa' (--wfa-memory-mode=ultralow --check=correct) 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.indel.alg -a indel-wfa --wfa-memory-mode=ultralow --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.edit.alg -a edit-wfa --wfa-memory-mode=ultralow --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=ultralow --check=correct 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-5,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-2,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-3,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10 1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score" 1: + IFS=, 1: + set -- '--wfa-memory-mode=ultralow --wfa-score-only' test.biwfa.score 1: + IFS=' ' 1: + MODE='--wfa-memory-mode=ultralow --wfa-score-only' 1: + PREFIX=test.biwfa.score 1: + echo '>>> Testing '\''test.biwfa.score'\'' (--wfa-memory-mode=ultralow --wfa-score-only)' 1: >>> Testing 'test.biwfa.score' (--wfa-memory-mode=ultralow --wfa-score-only) 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.indel.alg -a indel-wfa --wfa-memory-mode=ultralow --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.edit.alg -a edit-wfa --wfa-memory-mode=ultralow --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=ultralow --wfa-score-only 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-5,1,2,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-2,3,1,4 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-3,5,3,2 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1 1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10 1: + diff tests/wfa.utest.check/test.edit.alg tests/wfa.utest.check/test.pb.edit.alg 1: + diff tests/wfa.utest.check/test.indel.alg tests/wfa.utest.check/test.pb.indel.alg 1: + diff tests/wfa.utest.check/test.affine.alg tests/wfa.utest.check/test.pb.affine.alg 1: + diff tests/wfa.utest.check/test.affine2p.alg tests/wfa.utest.check/test.pb.affine2p.alg 1: + diff tests/wfa.utest.check/test.affine.p0.alg tests/wfa.utest.check/test.pb.affine.p0.alg 1: + diff tests/wfa.utest.check/test.affine.p1.alg tests/wfa.utest.check/test.pb.affine.p1.alg 1: + diff tests/wfa.utest.check/test.affine.p2.alg tests/wfa.utest.check/test.pb.affine.p2.alg 1: + diff tests/wfa.utest.check/test.affine.p3.alg tests/wfa.utest.check/test.pb.affine.p3.alg 1: + diff tests/wfa.utest.check/test.affine.p4.alg tests/wfa.utest.check/test.pb.affine.p4.alg 1: + diff tests/wfa.utest.check/test.affine.p5.alg tests/wfa.utest.check/test.pb.affine.p5.alg 1: + diff tests/wfa.utest.check/test.affine.wfapt0.alg tests/wfa.utest.check/test.pb.affine.wfapt0.alg 1: + diff tests/wfa.utest.check/test.affine.wfapt1.alg tests/wfa.utest.check/test.pb.affine.wfapt1.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.edit.alg tests/wfa.utest.check/test.biwfa.edit.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.indel.alg tests/wfa.utest.check/test.biwfa.indel.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.alg tests/wfa.utest.check/test.biwfa.affine.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine2p.alg tests/wfa.utest.check/test.biwfa.affine2p.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p0.alg tests/wfa.utest.check/test.biwfa.affine.p0.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p1.alg tests/wfa.utest.check/test.biwfa.affine.p1.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p2.alg tests/wfa.utest.check/test.biwfa.affine.p2.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p3.alg tests/wfa.utest.check/test.biwfa.affine.p3.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p4.alg tests/wfa.utest.check/test.biwfa.affine.p4.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p5.alg tests/wfa.utest.check/test.biwfa.affine.p5.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.wfapt0.alg tests/wfa.utest.check/test.biwfa.affine.wfapt0.alg 1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.wfapt1.alg tests/wfa.utest.check/test.biwfa.affine.wfapt1.alg 1: + grep Alignments.Correct ./tests/wfa.utest.log 1: + grep Time.Alignment ./tests/wfa.utest.log 1: + awk '{if ($4 != "ms") print $3" "$4}' 1: + sort -n 1: + grep 'Maximum resident set size' ./tests/wfa.utest.log 1: + awk '{print $6}' 1: + sort -n 1: + echo -n '>>> Correct: ' 1: >>> Correct: + tail -n 4 ./tests/wfa.utest.log.time ./tests/wfa.utest.check/wfa.utest.log.time 1: ==> ./tests/wfa.utest.log.time <== 1: 1: ==> ./tests/wfa.utest.check/wfa.utest.log.time <== 1: 4.01 s 1: 5.01 s 1: 7.65 s 1: 13.33 s 1: + tail -n 4 ./tests/wfa.utest.log.mem ./tests/wfa.utest.check/wfa.utest.log.mem 1: ==> ./tests/wfa.utest.log.mem <== 1: 1: ==> ./tests/wfa.utest.check/wfa.utest.log.mem <== 1: 414740 1: 566220 1: 827568 1: 1783148 1: + ./tests/wfa.utest.cmp.sh ./tests ./tests/wfa.utest.check 1: > Comparing ./tests vs ./tests/wfa.utest.check 1: [UTest::*] ./tests/wfa.utest.check/*.alg doesn't exist. 1: + grep 'Exit status:' ./tests/wfa.utest.log 1: + sort 1: + uniq -c 1: + grep 'Command terminated by signal' ./tests/wfa.utest.log 1: + sort 1: + uniq -c 1: + cat ./tests/wfa.utest.log.correct 1: + awk '{print $5$6}' 1: + sort 1: + uniq -c 1/1 Test #1: wfa2lib .......................... Passed 0.15 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.25 sec make[1]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libwfa2-2.3.3/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libwfa2-2.3.3 -B/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2.a -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2.so.0 -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2.so -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_align.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_aligner.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_attributes.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_backtrace.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_backtrace_buffer.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_backtrace_offload.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_bialign.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_bialigner.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_components.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_affine.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_affine2p.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_edit.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_linear.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_debug.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_display.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_extend.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_heuristic.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_offset.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_pcigar.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_penalties.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_plot.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_slab.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_unialign.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wfa.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wfa.hpp -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/bitmap.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/commons.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/dna_text.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/heatmap.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/sequence_buffer.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/string_padded.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/vector.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/affine2p_penalties.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/affine_penalties.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/cigar.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/linear_penalties.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/score_matrix.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/mm_allocator.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/mm_stack.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/profiler_counter.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/profiler_timer.h -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2cpp.so.0 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2cpp.so.0" to "" -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2cpp.so -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2cpp.a -- Installing: /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/bindings/cpp/WFAligner.hpp make[1]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libwfa2-2.3.3' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libwfa2-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libwfa2-0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2.a debian/libwfa2-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2.so debian/libwfa2-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libwfa2-2.3.3/debian/tmp/usr/lib/x86_64-linux-gnu/libwfa2.so.0 debian/libwfa2-0/usr/lib/x86_64-linux-gnu PKGDEV=libwfa2-dev PKGSHL=libwfa2-0 install -d -m 755 debian/libwfa2-dev/usr mv debian/tmp/usr/include debian/libwfa2-dev/usr make[1]: Leaving directory '/build/reproducible-path/libwfa2-2.3.3' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: symbol sqrt used by debian/libwfa2-0/usr/lib/x86_64-linux-gnu/libwfa2.so.0 found in none of the libraries dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libwfa2-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libwfa2-0-dbgsym' in '../libwfa2-0-dbgsym_2.3.3-4_amd64.deb'. dpkg-deb: building package 'libwfa2-0' in '../libwfa2-0_2.3.3-4_amd64.deb'. dpkg-deb: building package 'libwfa2-dev' in '../libwfa2-dev_2.3.3-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libwfa2_2.3.3-4_amd64.buildinfo dpkg-genchanges --build=binary -O../libwfa2_2.3.3-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/800524/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/800524/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/800524 and its subdirectories I: Current time: Sat Jan 17 04:46:17 +14 2026 I: pbuilder-time-stamp: 1768574777