I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 20 06:53:56 +14 2024 I: pbuilder-time-stamp: 1729356836 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-db-gff-perl_1.7.4-1.dsc] I: copying [./libbio-db-gff-perl_1.7.4.orig.tar.gz] I: copying [./libbio-db-gff-perl_1.7.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 13 15:19:19 2020 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-gff-perl_1.7.4-1.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-gff-perl in libbio-db-gff-perl-1.7.4 dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 19 16:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=14491909f8154eafa5259a253f0d7219 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3052969 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rUmrlHHu/pbuilderrc_TzJZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rUmrlHHu/b2 --logfile b2/build.log libbio-db-gff-perl_1.7.4-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libapache-dbi-perl; however: Package libapache-dbi-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-biofetch-perl; however: Package libbio-db-biofetch-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however: Package libcgi-pm-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: apache2-bin{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1t64{a} libaprutil1-dbd-sqlite3{a} libaprutil1-ldap{a} libaprutil1t64{a} libarchive-zip-perl{a} libbio-db-biofetch-perl{a} libbio-perl-perl{a} libbrotli1{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl4t64{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-build-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbsd-resource-perl libcgi-fast-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libmodule-signature-perl libpod-readme-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk publicsuffix wget 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 32.2 MB of archives. After unpacking 113 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libapr1t64 amd64 1.7.5-1 [104 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libaprutil1t64 amd64 1.6.3-3 [89.3 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-3 [13.9 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libaprutil1-ldap amd64 1.6.3-3 [12.1 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 27 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 apache2-bin amd64 2.4.62-3 [1394 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1 [99.4 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1 [13.5 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libapache2-mod-perl2 amd64 2.0.13-2 [808 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libdbi-perl amd64 1.645-1 [860 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libcgi-pm-perl all 4.66-1 [217 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 89 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libmodule-build-perl all 0.423400-2 [252 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Fetched 32.2 MB in 3s (12.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19799 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../91-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../92-libtest-deep-perl_1.204-1_all.deb ... Unpacking libtest-deep-perl (1.204-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../93-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../94-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... 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Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.63.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libapr1t64:amd64 (1.7.5-1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up liblua5.4-0:amd64 (5.4.6-3+b1) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up openssl (3.3.2-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:amd64 (1.645-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libaprutil1t64:amd64 (1.6.3-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.3-3) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libaprutil1-ldap:amd64 (1.6.3-3) ... Setting up apache2-bin (2.4.62-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libapache2-mod-perl2 (2.0.13-2) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libapache-dbi-perl (1.12-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-db-gff-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-gff-perl_1.7.4-1_source.changes dpkg-buildpackage: info: source package libbio-db-gff-perl dpkg-buildpackage: info: source version 1.7.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-gff-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-gff-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::GFF Writing MYMETA.yml and MYMETA.json dh_auto_build make -j20 make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' cp lib/Bio/DB/GFF/Aggregator/transcript.pm blib/lib/Bio/DB/GFF/Aggregator/transcript.pm cp lib/Bio/DB/GFF/Adaptor/dbi/pg.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm cp lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm cp lib/Bio/DB/GFF/Aggregator/alignment.pm blib/lib/Bio/DB/GFF/Aggregator/alignment.pm cp lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm cp lib/Bio/DB/GFF/Adaptor/berkeleydb.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm cp lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm cp lib/Bio/DB/GFF/Aggregator/match.pm blib/lib/Bio/DB/GFF/Aggregator/match.pm cp lib/Bio/DB/GFF/Adaptor/memory/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm cp lib/Bio/DB/GFF/Aggregator/coding.pm blib/lib/Bio/DB/GFF/Aggregator/coding.pm cp lib/Bio/DB/GFF/Adaptor/biofetch.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm cp lib/Bio/DB/GFF/Aggregator/processed_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm cp lib/Bio/DB/GFF/Aggregator/orf.pm blib/lib/Bio/DB/GFF/Aggregator/orf.pm cp lib/Bio/DB/GFF/Aggregator/clone.pm blib/lib/Bio/DB/GFF/Aggregator/clone.pm cp lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm cp lib/Bio/DB/GFF/Aggregator.pm blib/lib/Bio/DB/GFF/Aggregator.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm cp lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm cp lib/Bio/DB/GFF/Adaptor/dbi.pm blib/lib/Bio/DB/GFF/Adaptor/dbi.pm cp lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm cp lib/Bio/DB/GFF/Aggregator/so_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm cp lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm cp lib/Bio/DB/GFF.pm blib/lib/Bio/DB/GFF.pm cp lib/Bio/DB/GFF/Adaptor/memory.pm blib/lib/Bio/DB/GFF/Adaptor/memory.pm cp lib/Bio/DB/GFF/Aggregator/none.pm blib/lib/Bio/DB/GFF/Aggregator/none.pm cp lib/Bio/DB/GFF/Aggregator/gene.pm blib/lib/Bio/DB/GFF/Aggregator/gene.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm cp lib/Bio/DB/GFF/Typename.pm blib/lib/Bio/DB/GFF/Typename.pm cp lib/Bio/DB/GFF/Feature.pm blib/lib/Bio/DB/GFF/Feature.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm cp lib/Bio/DB/GFF/Homol.pm blib/lib/Bio/DB/GFF/Homol.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm cp lib/Bio/DB/GFF/Featname.pm blib/lib/Bio/DB/GFF/Featname.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm cp lib/Bio/DB/GFF/Segment.pm blib/lib/Bio/DB/GFF/Segment.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm cp lib/Bio/DB/GFF/RelSegment.pm blib/lib/Bio/DB/GFF/RelSegment.pm cp bin/bp_bulk_load_gff blib/script/bp_bulk_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_bulk_load_gff cp bin/bp_das_server blib/script/bp_das_server cp bin/bp_fast_load_gff blib/script/bp_fast_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_das_server "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fast_load_gff cp bin/bp_genbank2gff blib/script/bp_genbank2gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff cp bin/bp_generate_histogram blib/script/bp_generate_histogram "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_generate_histogram cp bin/bp_load_gff blib/script/bp_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_load_gff cp bin/bp_meta_gff blib/script/bp_meta_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_meta_gff Manifying 6 pod documents Manifying 27 pod documents Manifying 16 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' dh_auto_test make -j20 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..50 ok 1 - Bio/DB/GFF.pm loaded ok ok 2 - Bio/DB/GFF/Adaptor/berkeleydb.pm loaded ok ok 3 - Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm loaded ok ok 4 - Bio/DB/GFF/Adaptor/biofetch.pm loaded ok ok 5 - Bio/DB/GFF/Adaptor/biofetch_oracle.pm loaded ok ok 6 - Bio/DB/GFF/Adaptor/dbi.pm loaded ok ok 7 - Bio/DB/GFF/Adaptor/dbi/caching_handle.pm loaded ok ok 8 - Bio/DB/GFF/Adaptor/dbi/iterator.pm loaded ok ok 9 - Bio/DB/GFF/Adaptor/dbi/mysql.pm loaded ok ok 10 - Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm loaded ok ok 11 - Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm loaded ok ok 12 - Bio/DB/GFF/Adaptor/dbi/oracle.pm loaded ok ok 13 - Bio/DB/GFF/Adaptor/dbi/pg.pm loaded ok ok 14 - Bio/DB/GFF/Adaptor/dbi/pg_fts.pm loaded ok ok 15 - Bio/DB/GFF/Adaptor/memory.pm loaded ok ok 16 - Bio/DB/GFF/Adaptor/memory/feature_serializer.pm loaded ok ok 17 - Bio/DB/GFF/Adaptor/memory/iterator.pm loaded ok ok 18 - Bio/DB/GFF/Aggregator.pm loaded ok ok 19 - Bio/DB/GFF/Aggregator/alignment.pm loaded ok ok 20 - Bio/DB/GFF/Aggregator/clone.pm loaded ok ok 21 - Bio/DB/GFF/Aggregator/coding.pm loaded ok ok 22 - Bio/DB/GFF/Aggregator/gene.pm loaded ok ok 23 - Bio/DB/GFF/Aggregator/match.pm loaded ok ok 24 - Bio/DB/GFF/Aggregator/none.pm loaded ok ok 25 - Bio/DB/GFF/Aggregator/orf.pm loaded ok ok 26 - Bio/DB/GFF/Aggregator/processed_transcript.pm loaded ok ok 27 - Bio/DB/GFF/Aggregator/so_transcript.pm loaded ok ok 28 - Bio/DB/GFF/Aggregator/transcript.pm loaded ok ok 29 - Bio/DB/GFF/Aggregator/ucsc_acembly.pm loaded ok ok 30 - Bio/DB/GFF/Aggregator/ucsc_ensgene.pm loaded ok ok 31 - Bio/DB/GFF/Aggregator/ucsc_genscan.pm loaded ok ok 32 - Bio/DB/GFF/Aggregator/ucsc_refgene.pm loaded ok ok 33 - Bio/DB/GFF/Aggregator/ucsc_sanger22.pm loaded ok ok 34 - Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm loaded ok ok 35 - Bio/DB/GFF/Aggregator/ucsc_softberry.pm loaded ok ok 36 - Bio/DB/GFF/Aggregator/ucsc_twinscan.pm loaded ok ok 37 - Bio/DB/GFF/Aggregator/ucsc_unigene.pm loaded ok ok 38 - Bio/DB/GFF/Featname.pm loaded ok ok 39 - Bio/DB/GFF/Feature.pm loaded ok ok 40 - Bio/DB/GFF/Homol.pm loaded ok ok 41 - Bio/DB/GFF/RelSegment.pm loaded ok ok 42 - Bio/DB/GFF/Segment.pm loaded ok ok 43 - Bio/DB/GFF/Typename.pm loaded ok ok 44 - bin/bp_bulk_load_gff compiled ok ok 45 - bin/bp_das_server compiled ok ok 46 - bin/bp_fast_load_gff compiled ok ok 47 - bin/bp_genbank2gff compiled ok ok 48 - bin/bp_generate_histogram compiled ok ok 49 - bin/bp_load_gff compiled ok ok 50 - bin/bp_meta_gff compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author You are loading a Bio::DB::GFF database with GFF3 formatted data. While this will likely work fine, the Bio::DB::GFF schema does not always faithfully capture the complexity represented in GFF3 files. Unless you have a specific reason for using Bio::DB::GFF, we suggest that you use a Bio::DB::SeqFeature::Store database and its corresponding loader, bp_seqfeature_load.pl. t/BioDBGFF.t ........... 1..275 ok 1 - use Bio::DB::GFF; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 # skip fetch_feature_by_gid() not implemented by this adaptor ok 102 # skip fetch_feature_by_gid() not implemented by this adaptor ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 # skip delete_groups() not implemented by this adaptor ok 133 # skip delete_groups() not implemented by this adaptor ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 # skip fetch_feature_by_gid() not implemented by this adaptor ok 239 # skip fetch_feature_by_gid() not implemented by this adaptor ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 # skip preferred groups are not supported by gff3 ok 247 # skip preferred groups are not supported by gff3 ok 248 # skip preferred groups are not supported by gff3 ok 249 ok 250 ok 251 ok 252 ok 253 ok 254 ok 255 ok 256 ok 257 ok 258 ok 259 ok 260 ok 261 ok 262 ok 263 ok 264 ok 265 ok 266 ok 267 ok 268 ok 269 # skip delete_groups() not implemented by this adaptor ok 270 # skip delete_groups() not implemented by this adaptor ok 271 ok 272 ok 273 ok 274 ok 275 ok All tests successful. Files=4, Tests=325, 20 wallclock secs ( 0.09 usr 0.02 sys + 8.07 cusr 1.43 csys = 9.61 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install --destdir=debian/libbio-db-gff-perl/ make -j20 install DESTDIR=/build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' Manifying 6 pod documents Manifying 27 pod documents Manifying 16 pod documents Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Feature.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/RelSegment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Segment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Typename.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Featname.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Homol.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch_oracle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/oracle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysql.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/transcript.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/orf.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/match.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/processed_transcript.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_refgene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/alignment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/so_transcript.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_softberry.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/coding.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_genscan.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/none.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/gene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_acembly.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_unigene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/clone.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_generate_histogram.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_bulk_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_genbank2gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_fast_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_meta_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_genscan.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_refgene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::processed_transcript.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Featname.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::so_transcript.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::transcript.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_softberry.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Segment.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Homol.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::none.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_acembly.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::orf.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::alignment.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_twinscan.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::gene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::match.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::coding.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Typename.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::oracle.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::RelSegment.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_handle.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Feature.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_ensgene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_unigene.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg_fts.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::clone.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_bulk_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_das_server Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_generate_histogram Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_fast_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_genbank2gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_meta_gff make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-gff-perl' in '../libbio-db-gff-perl_1.7.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-gff-perl_1.7.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-db-gff-perl_1.7.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3052969/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3052969 and its subdirectories I: Current time: Sun Oct 20 06:58:11 +14 2024 I: pbuilder-time-stamp: 1729357091