I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 9 14:38:38 +14 2025 I: pbuilder-time-stamp: 1749429518 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align2_2.0.1-1.dsc] I: copying [./lambda-align2_2.0.1.orig.tar.gz] I: copying [./lambda-align2_2.0.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jul 21 10:29:22 2023 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-1.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align2 in lambda-align2-2.0.1 dpkg-source: info: unpacking lambda-align2_2.0.1.orig.tar.gz dpkg-source: info: unpacking lambda-align2_2.0.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_tests dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 9 00:38 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=a4ec3de0cc554ce78ee713da8721613b LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2837001 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.S4b5QIML/pbuilderrc_Qs95 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.S4b5QIML/b2 --logfile b2/build.log lambda-align2_2.0.1-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 7 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Fetched 39.2 MB in 0s (109 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../17-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../19-libarchive13t64_3.7.2-2_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.2-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../21-libkrb5support0_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../22-libcom-err2_1.47.1~rc2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../23-libk5crypto3_1.20.1-6+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../24-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../25-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../26-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/lambda-align2-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align2_2.0.1-1_source.changes dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' if ls tests/*~ 1> /dev/null 2>&1; then \ for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \ fi dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lambda-align2.substvars debian/files rm -fr -- debian/lambda-align2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_configure -- \ -DLAMBDA_NATIVE_BUILD=OFF \ -DLAMBDA_MMAPPED_DB=OFF \ -DCMAKE_BUILD_TYPE=Release \ "-DLAMBDA_MULTIOPT_BUILD=1" cd build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=1 .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. Compiler Detection -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): src/CMakeLists.txt:34 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- These dependencies were found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements were met. Build configuration -- LAMBDA version is: 2.0.1 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF LAMBDA_MMAPPED_DB OFF LAMBDA_NATIVE_BUILD OFF LAMBDA_MULTIOPT_BUILD 1 LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align2-2.0.1/build make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_auto_build -O--builddirectory=build cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles /build/reproducible-path/lambda-align2-2.0.1/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/lambda2-sse4.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make -f src/CMakeFiles/lambda2-sse4.dir/build.make src/CMakeFiles/lambda2-sse4.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 11%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -MD -MT src/CMakeFiles/lambda2.dir/lambda.cpp.o -MF CMakeFiles/lambda2.dir/lambda.cpp.o.d -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp [ 22%] Building CXX object src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.1\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt -MD -MT src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -MF CMakeFiles/lambda2-sse4.dir/lambda.cpp.o.d -o CMakeFiles/lambda2-sse4.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:32, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:22: /build/reproducible-path/lambda-align2-2.0.1/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:39: /build/reproducible-path/lambda-align2-2.0.1/src/search_algo.hpp:75:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /build/reproducible-path/lambda-align2-2.0.1/src/search.hpp:22: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:38, from /build/reproducible-path/lambda-align2-2.0.1/src/lambda.cpp:23: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_saca.hpp:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align2-2.0.1/src/mkindex.hpp:36: /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align2-2.0.1/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/lambda2 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'assign.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 44%] Linking CXX executable ../bin/lambda2-sse4 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2-sse4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align2-2.0.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=42 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic "CMakeFiles/lambda2-sse4.dir/lambda.cpp.o" -o ../bin/lambda2-sse4 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 44%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' cd /build/reproducible-path/lambda-align2-2.0.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align2-2.0.1 /build/reproducible-path/lambda-align2-2.0.1/src /build/reproducible-path/lambda-align2-2.0.1/build /build/reproducible-path/lambda-align2-2.0.1/build/src /build/reproducible-path/lambda-align2-2.0.1/build/src/CMakeFiles/manual.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' [ 88%] Generating lambda2-mkindexn.1 [ 88%] Generating lambda2-searchn.1 [ 88%] Generating lambda2-mkindexp.1 [100%] Generating lambda2.1 [100%] Generating lambda2-searchp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 --export-help=man > lambda2.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 cd /build/reproducible-path/lambda-align2-2.0.1/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target manual In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'assign.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' [100%] Built target lambda2-sse4 make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' #for md5 in debian/*.md5sums; do gzip --keep ${md5}; done #cp --backup debian/*md5sums.gz tests/ #cd build/tests && ctest . -I 1,10 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build rm -f -- debian/lambda-align2.substvars rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install --destdir=debian/lambda-align2/ -O--builddirectory=build install -m0755 -d /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align2-2.0.1 -B/build/reproducible-path/lambda-align2-2.0.1/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/libexec/lambda2-sse4 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/bin/lambda2 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-AGPL3.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/doc/lambda2/README.rst -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 -- Installing: /build/reproducible-path/lambda-align2-2.0.1/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installdocs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/copyright debian/lambda-align2/usr/share/doc/lambda-align2/copyright dh_installchangelogs -O--builddirectory=build install -m0755 -d debian/lambda-align2/usr/share/doc/lambda-align2 install -p -m0644 debian/.debhelper/generated/lambda-align2/dh_installchangelogs.dch.trimmed debian/lambda-align2/usr/share/doc/lambda-align2/changelog.Debian rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' sed -i -e 's@\(defaults to working directory\.\).*@\1@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i -e 's@\(number of threads to run concurrently\).*@\1. Default: autodetected.@g' ./debian/lambda-align2/usr/share/man/man1/*.1 sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/^lambda2 mkindexp /lambda2_mkindexp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 sed -i 's/LAMBDA2 SEARCHN/LAMBDA2_SEARCHN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/^lambda2 searchn /lambda2_searchn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build cd debian/lambda-align2 chmod a-x usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 gzip -9nf usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1 cd '/build/reproducible-path/lambda-align2-2.0.1' dh_fixperms -O--builddirectory=build find debian/lambda-align2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lambda-align2/usr/share/doc -type f -a -true -a ! -regex 'debian/lambda-align2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lambda-align2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lambda-align2/usr/bin debian/lambda-align2/usr/libexec -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--builddirectory=build rm -f debian/lambda-align2.debhelper.log debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1' # pass make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1' dh_strip -a -O--builddirectory=build strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2 strip --remove-section=.comment --remove-section=.note debian/lambda-align2/usr/libexec/lambda2-sse4 dh_makeshlibs -a -O--builddirectory=build rm -f debian/lambda-align2/DEBIAN/shlibs dh_shlibdeps -a -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dpkg-shlibdeps -Tdebian/lambda-align2.substvars debian/lambda-align2/usr/libexec/lambda2 debian/lambda-align2/usr/libexec/lambda2-sse4 dh_installdeb -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN dh_gencontrol -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN echo misc:Depends= >> debian/lambda-align2.substvars echo misc:Pre-Depends= >> debian/lambda-align2.substvars dpkg-gencontrol -plambda-align2 -ldebian/changelog -Tdebian/lambda-align2.substvars -cdebian/control -Pdebian/lambda-align2 chmod 0644 -- debian/lambda-align2/DEBIAN/control dh_md5sums -O--builddirectory=build install -m0755 -d debian/lambda-align2/DEBIAN cd debian/lambda-align2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lambda-align2/DEBIAN/md5sums dh_builddeb -O--builddirectory=build dpkg-deb --root-owner-group --build debian/lambda-align2 .. dpkg-deb: building package 'lambda-align2' in '../lambda-align2_2.0.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align2_2.0.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align2_2.0.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2837001/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2837001 and its subdirectories I: Current time: Mon Jun 9 14:42:17 +14 2025 I: pbuilder-time-stamp: 1749429737