I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 7 10:20:41 +14 2026 I: pbuilder-time-stamp: 1767730841 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hdmf_3.14.5-1.dsc] I: copying [./hdmf_3.14.5.orig.tar.gz] I: copying [./hdmf_3.14.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 2 15:04:50 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found dpkg-source: info: extracting hdmf in hdmf-3.14.5 dpkg-source: info: unpacking hdmf_3.14.5.orig.tar.gz dpkg-source: info: unpacking hdmf_3.14.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying auto-gitignore I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/525128/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 6 20:20 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/525128/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/525128/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=c690dabba08e48079432dbaa9fc200d0 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=525128 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rG1HaWeA/pbuilderrc_ZVhc --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rG1HaWeA/b2 --logfile b2/build.log hdmf_3.14.5-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/525128/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dh-sequence-python3, pybuild-plugin-pyproject, python3-setuptools, python3-all, python3-hatchling, python3-hatch-vcs, debhelper-compat (= 13), python3-h5py, python3-jsonschema, python3-numpy, python3-scipy, python3-dateutil, python3-ruamel.yaml, python3-pandas dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-hatchling; however: Package python3-hatchling is not installed. pbuilder-satisfydepends-dummy depends on python3-hatch-vcs; however: Package python3-hatch-vcs is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-dateutil; however: Package python3-dateutil is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsz2{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-build{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hatch-vcs{a} python3-hatchling{a} python3-inflect{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pathspec{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-referencing{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-trove-classifiers{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-idna python3-jinja2 python3-json-pointer python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-rfc3987 python3-tables python3-uritemplate python3-webcolors wget 0 packages upgraded, 110 newly installed, 0 to remove and 0 not upgraded. Need to get 72.0 MB of archives. After unpacking 363 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 76 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b2 [10.1 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20241024 [11.4 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 89 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-trove-classifiers all 2024.9.12-1 [10.2 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-hatchling all 1.26.3-1 [47.0 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-referencing all 0.35.1-1 [23.5 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2+b1 [179 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-6 [20.2 MB] Fetched 72.0 MB in 2s (29.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20288 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21350 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. 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Unpacking pybuild-plugin-pyproject (6.20241024) ... Selecting previously unselected package python3-all. Preparing to unpack .../66-python3-all_3.12.6-1_amd64.deb ... Unpacking python3-all (3.12.6-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../67-python3-attr_23.2.0-2_all.deb ... Unpacking python3-attr (23.2.0-2) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../68-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../69-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../70-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../71-python3-h5py-serial_3.11.0-5_amd64.deb ... 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Preparing to unpack .../77-python3-setuptools-scm_8.1.0-1_all.deb ... Unpacking python3-setuptools-scm (8.1.0-1) ... Selecting previously unselected package python3-hatch-vcs. Preparing to unpack .../78-python3-hatch-vcs_0.4.0-1_all.deb ... Unpacking python3-hatch-vcs (0.4.0-1) ... Selecting previously unselected package python3-rpds-py. Preparing to unpack .../79-python3-rpds-py_0.21.0-2_amd64.deb ... Unpacking python3-rpds-py (0.21.0-2) ... Selecting previously unselected package python3-referencing. Preparing to unpack .../80-python3-referencing_0.35.1-1_all.deb ... Unpacking python3-referencing (0.35.1-1) ... Selecting previously unselected package python3-jsonschema-specifications. Preparing to unpack .../81-python3-jsonschema-specifications_2023.12.1-2_all.deb ... Unpacking python3-jsonschema-specifications (2023.12.1-2) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../82-python3-jsonschema_4.19.2-5_all.deb ... Unpacking python3-jsonschema (4.19.2-5) ... Selecting previously unselected package python3-tz. Preparing to unpack .../83-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../84-python3-pandas-lib_2.2.3+dfsg-5+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../85-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-ruamel.yaml.clib:amd64. Preparing to unpack .../86-python3-ruamel.yaml.clib_0.2.8+ds-2+b1_amd64.deb ... Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2+b1) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../87-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../88-python3-scipy_1.13.1-6_amd64.deb ... Unpacking python3-scipy (1.13.1-6) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 6 20:21:09 UTC 2026. Universal Time is now: Tue Jan 6 20:21:09 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up liblzf1:amd64 (3.6-4+b2) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rpds-py (0.21.0-2) ... Setting up python3-trove-classifiers (2024.9.12-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-build (1.2.2-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2+b1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-hatchling (1.26.3-1) ... Setting up python3-referencing (0.35.1-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-6) ... Setting up pybuild-plugin-pyproject (6.20241024) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-h5py-serial (3.11.0-5) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-h5py (3.11.0-5) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/525128/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/525128/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/hdmf-3.14.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hdmf_3.14.5-1_source.changes dpkg-buildpackage: info: source package hdmf dpkg-buildpackage: info: source version 3.14.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from hdmf-3.14.5/debian/source/options: --extend-diff-ignore=^src/[^/]+\.egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf * Building wheel... Successfully built hdmf-3.14.5-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build; python3.12 -m unittest discover -v test_append_1_0_5 (tests.unit.back_compat_tests.test_1_1_0.Test1_1_0.test_append_1_0_5) Test whether we can append to files made by hdmf version 1.0.5 ... ok test_read_1_0_5 (tests.unit.back_compat_tests.test_1_1_0.Test1_1_0.test_read_1_0_5) Test whether we can read files made by hdmf version 1.0.5 ... ok test_build_added_attr (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetAddedAttrs.test_build_added_attr) Test build of BarHolder which can contain multiple extended BarData objects, which have a new attribute. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetDimensionLabelsOneOption.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetDimensionLabelsOneOptionRefined.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetDimensionLabelsTwoOptionsOneMatch.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetDimensionLabelsTwoOptionsTwoMatches.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetDimensionLabelsUnspecified.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build_correct_dtype (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetNotRefinedDtype.test_build_correct_dtype) Test build of BarDataHolder which contains a BarData. ... ok test_build_incorrect_dtype (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetNotRefinedDtype.test_build_incorrect_dtype) Test build of BarDataHolder which contains a BarData ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetOneOptionBadShapeUnspecified1.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetOneOptionBadShapeUnspecified2.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build_refined_dtype_convert (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetRefinedDtype.test_build_refined_dtype_convert) Test build of BarDataHolder which contains a BarData with data that needs to be converted to the refined dtype. ... ok test_build (tests.unit.build_tests.mapper_tests.test_build.TestBuildDatasetTwoOptionsBadShapeUnspecified.test_build) Test build of BarDataHolder which contains a BarData. ... ok test_build_added_attr (tests.unit.build_tests.mapper_tests.test_build.TestBuildGroupAddedAttr.test_build_added_attr) Test build of BarHolder which can contain multiple extended Bar objects, which have a new attribute. ... ok test_build_refined_attr (tests.unit.build_tests.mapper_tests.test_build.TestBuildGroupRefinedAttr.test_build_refined_attr) Test build of BarHolder which can contain multiple extended Bar objects, which have a modified attr2. ... ok test_unwrap (tests.unit.build_tests.mapper_tests.test_build.TestUnwrapTermSetWrapperBuild.test_unwrap) ... skipped 'optional LinkML module is not installed' test_date_array (tests.unit.build_tests.mapper_tests.test_build_datetime.TestBuildDatasetDateTime.test_date_array) ... ok test_date_scalar (tests.unit.build_tests.mapper_tests.test_build_datetime.TestBuildDatasetDateTime.test_date_scalar) ... ok test_datetime_array (tests.unit.build_tests.mapper_tests.test_build_datetime.TestBuildDatasetDateTime.test_datetime_array) ... ok test_datetime_scalar (tests.unit.build_tests.mapper_tests.test_build_datetime.TestBuildDatasetDateTime.test_datetime_scalar) ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildMultiTypeInc.test_build_two) Test building a container which contains multiple containers of different types as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeDef.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeInc.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneOrManyTypeIncUntypedGroup.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeDef.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeInc.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneTypeIncUntypedGroup.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneUntyped.test_build_data) Test building a container which contains an untyped empty subgroup and an untyped non-empty dataset. ... ok test_build_empty_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildOneUntyped.test_build_empty_data) Test building a container which contains an untyped empty subgroup and an untyped empty dataset. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeDef.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeInc.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildTwoTypeIncUntypedGroup.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeDef.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeInc.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrManyTypeIncUntypedGroup.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeDef.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeInc.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_mismatch (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup.test_build_mismatch) Test building a container which contains no containers that match the spec as the spec allows. ... ok test_build_one (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup.test_build_one) Test building a container which contains one container as the spec allows. ... ok test_build_two (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup.test_build_two) Test building a container which contains multiple containers as the spec allows. ... ok test_build_zero (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneTypeIncUntypedGroup.test_build_zero) Test building a container which contains no containers as the spec allows. ... ok test_build_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneUntyped.test_build_data) Test building a container which contains an untyped empty subgroup and an untyped non-empty dataset. ... ok test_build_empty_data (tests.unit.build_tests.mapper_tests.test_build_quantity.TestBuildZeroOrOneUntyped.test_build_empty_data) Test building a container which contains an untyped empty subgroup and an untyped empty dataset. ... ok test_constructor (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_constructor) ... ok test_constructor_data_builder_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_constructor_data_builder_dtype) ... ok test_constructor_data_builder_no_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_constructor_data_builder_no_dtype) ... ok test_overwrite_data (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_overwrite_data) ... ok test_overwrite_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_overwrite_dtype) ... ok test_overwrite_parent (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_overwrite_parent) ... ok test_overwrite_source (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_overwrite_source) ... ok test_repr (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_repr) ... ok test_set_data (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_set_data) ... ok test_set_dtype (tests.unit.build_tests.test_builder.TestDatasetBuilder.test_set_dtype) ... ok test_constructor (tests.unit.build_tests.test_builder.TestGroupBuilder.test_constructor) ... ok test_constructor_dset_none (tests.unit.build_tests.test_builder.TestGroupBuilder.test_constructor_dset_none) ... ok test_overwrite_location (tests.unit.build_tests.test_builder.TestGroupBuilder.test_overwrite_location) ... ok test_repr (tests.unit.build_tests.test_builder.TestGroupBuilder.test_repr) ... ok test_set_location (tests.unit.build_tests.test_builder.TestGroupBuilder.test_set_location) ... ok test_set_source (tests.unit.build_tests.test_builder.TestGroupBuilder.test_set_source) Test that setting source sets the children builder source. ... ok test_set_source_no_reset (tests.unit.build_tests.test_builder.TestGroupBuilder.test_set_source_no_reset) Test that setting source does not set the children builder source if children already have a source. ... ok test_get_attr (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_get_attr) Test get() for attributes ... ok test_get_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_get_dataset) Test get() for datasets ... ok test_get_group (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_get_group) Test get() for groups ... ok test_get_group_deeper (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_get_group_deeper) Test get() for groups deeper in hierarchy ... ok test_get_invalid_key (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_get_invalid_key) Test get() for invalid key ... ok test_get_link (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_get_link) Test get() for links ... ok test_getitem_attr (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_attr) Test __getitem__ for attributes ... ok test_getitem_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_dataset) Test __getitem__ for datasets ... ok test_getitem_group (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_group) Test __getitem__ for groups ... ok test_getitem_group_deeper (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_group_deeper) Test __getitem__ for groups deeper in hierarchy ... ok test_getitem_invalid_key (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_invalid_key) Test __getitem__ for invalid key ... ok test_getitem_invalid_key_deeper (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_invalid_key_deeper) Test __getitem__ for invalid key ... ok test_getitem_link (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_getitem_link) Test __getitem__ for links ... ok test_items (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_items) Test items() ... ok test_keys (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_keys) Test keys() ... ok test_path (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_path) ... ok test_values (tests.unit.build_tests.test_builder.TestGroupBuilderGetters.test_values) Test values() ... ok test_is_empty_false_attribute (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_false_attribute) Test is_empty() when group has an attribute ... ok test_is_empty_false_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_false_dataset) Test is_empty() when group has a dataset ... ok test_is_empty_false_group_attribute (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_false_group_attribute) Test is_empty() when group has subgroup with an attribute ... ok test_is_empty_false_group_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_false_group_dataset) Test is_empty() when group has a subgroup with a dataset ... ok test_is_empty_false_group_link (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_false_group_link) Test is_empty() when group has subgroup with a link ... ok test_is_empty_false_link (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_false_link) Test is_empty() when group has a link ... ok test_is_empty_true (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_true) Test empty when group has nothing in it ... ok test_is_empty_true_group_empty (tests.unit.build_tests.test_builder.TestGroupBuilderIsEmpty.test_is_empty_true_group_empty) Test is_empty() when group has an empty subgroup ... ok test_set_attribute (tests.unit.build_tests.test_builder.TestGroupBuilderSetters.test_set_attribute) ... ok test_set_dataset (tests.unit.build_tests.test_builder.TestGroupBuilderSetters.test_set_dataset) ... ok test_set_exists_wrong_type (tests.unit.build_tests.test_builder.TestGroupBuilderSetters.test_set_exists_wrong_type) ... ok test_set_group (tests.unit.build_tests.test_builder.TestGroupBuilderSetters.test_set_group) ... ok test_set_link (tests.unit.build_tests.test_builder.TestGroupBuilderSetters.test_set_link) ... ok test_setitem_disabled (tests.unit.build_tests.test_builder.TestGroupBuilderSetters.test_setitem_disabled) Test __setitem__ is disabled ... ok test_constructor (tests.unit.build_tests.test_builder.TestLinkBuilder.test_constructor) ... ok test_constructor_no_name (tests.unit.build_tests.test_builder.TestLinkBuilder.test_constructor_no_name) ... ok test_constructor (tests.unit.build_tests.test_builder.TestReferenceBuilder.test_constructor) ... ok test_constructor (tests.unit.build_tests.test_builder.TestRegionBuilder.test_constructor) ... ok test_post_process_default_name (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_post_process_default_name) Test that docval generation for a class with a default name has the default value for name set. ... ok test_post_process_fixed_name (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_post_process_fixed_name) Test that docval generation for a class with a fixed name does not contain a docval arg for name. ... ok test_process_field_spec_link (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_process_field_spec_link) Test that processing a link spec does not set child=True in __fields__. ... ok test_process_field_spec_overwrite (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_process_field_spec_overwrite) Test that docval generation overwrites previous docval args. ... ok test_update_docval (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval) Test update_docval_args for a variety of data types and mapping configurations. ... ok test_update_docval_attr_shape (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval_attr_shape) Test that update_docval_args for an attribute with shape sets the type and shape keys. ... ok test_update_docval_default_value (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval_default_value) Test that update_docval_args for an optional field with default value sets the default key. ... ok test_update_docval_default_value_none (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval_default_value_none) Test that update_docval_args for an optional field sets default: None. ... ok test_update_docval_default_value_none_required_parent (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval_default_value_none_required_parent) Test that update_docval_args for an optional field with a required parent sets default: None. ... ok test_update_docval_dset_shape (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval_dset_shape) Test that update_docval_args for a dataset with shape sets the type and shape keys. ... ok test_update_docval_required_field_optional_parent (tests.unit.build_tests.test_classgenerator.TestBaseProcessFieldSpec.test_update_docval_required_field_optional_parent) Test that update_docval_args for a required field with an optional parent sets default: None. ... ok test_bad_generator (tests.unit.build_tests.test_classgenerator.TestClassGenerator.test_bad_generator) Test that register_generator raises an error if the generator is not an instance of CustomClassGenerator. ... ok test_no_generators (tests.unit.build_tests.test_classgenerator.TestClassGenerator.test_no_generators) Test that a ClassGenerator without registered generators does nothing. ... ok test_register_generator (tests.unit.build_tests.test_classgenerator.TestClassGenerator.test_register_generator) Test TypeMap.register_generator and ClassGenerator.register_generator. ... ok test_dynamic_container_composition (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_composition) ... ok test_dynamic_container_composition_missing_type (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_composition_missing_type) ... ok test_dynamic_container_composition_reverse_order (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_composition_reverse_order) ... ok test_dynamic_container_constructor (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_constructor) ... ok test_dynamic_container_constructor_name (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_constructor_name) ... ok test_dynamic_container_constructor_name_default_name (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_constructor_name_default_name) ... ok test_dynamic_container_creation (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_creation) ... ok test_dynamic_container_creation_defaults (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_creation_defaults) ... ok test_dynamic_container_default_name (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_default_name) ... ok test_dynamic_container_fixed_name (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_fixed_name) Test that dynamic class generation for an extended type with a fixed name works. ... ok test_dynamic_container_super_init_fixed_value (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_dynamic_container_super_init_fixed_value) Test that dynamic class generation when the superclass init does not include all fields works ... ok test_multi_container_spec (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_multi_container_spec) ... ok test_multi_container_spec_one_or_more_missing (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_multi_container_spec_one_or_more_missing) ... ok test_multi_container_spec_one_or_more_ok (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_multi_container_spec_one_or_more_ok) ... ok test_multi_container_spec_with_inc (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_multi_container_spec_with_inc) ... ok test_multi_container_spec_zero_or_more (tests.unit.build_tests.test_classgenerator.TestDynamicContainer.test_multi_container_spec_zero_or_more) ... ok test_init_docval (tests.unit.build_tests.test_classgenerator.TestDynamicContainerFixedValue.test_init_docval) ... ok test_init_fields (tests.unit.build_tests.test_classgenerator.TestDynamicContainerFixedValue.test_init_fields) ... ok test_init_object (tests.unit.build_tests.test_classgenerator.TestDynamicContainerFixedValue.test_init_object) ... ok test_set_value (tests.unit.build_tests.test_classgenerator.TestDynamicContainerFixedValue.test_set_value) ... ok test_gen_parent_class (tests.unit.build_tests.test_classgenerator.TestDynamicContainerIncludingFixedName.test_gen_parent_class) ... ok test_init_fields (tests.unit.build_tests.test_classgenerator.TestDynamicContainerIncludingFixedName.test_init_fields) ... ok test_set_field (tests.unit.build_tests.test_classgenerator.TestDynamicContainerIncludingFixedName.test_set_field) ... ok test_set_field_bad (tests.unit.build_tests.test_classgenerator.TestDynamicContainerIncludingFixedName.test_set_field_bad) ... ok test_get_class_include_attribute_object_reference (tests.unit.build_tests.test_classgenerator.TestGetClassObjectReferences.test_get_class_include_attribute_object_reference) Test that get_class resolves data types with an attribute that is an object reference. ... ok test_get_class_include_dataset_of_references (tests.unit.build_tests.test_classgenerator.TestGetClassObjectReferences.test_get_class_include_dataset_of_references) Test that get_class resolves datasets of object references. ... ok test_get_class_include_nested_attribute_object_reference (tests.unit.build_tests.test_classgenerator.TestGetClassObjectReferences.test_get_class_include_nested_attribute_object_reference) Test that get_class resolves nested datasets that have an attribute that is an object reference. ... ok test_get_class_include_nested_object_reference (tests.unit.build_tests.test_classgenerator.TestGetClassObjectReferences.test_get_class_include_nested_object_reference) Test that get_class resolves nested datasets that are object references. ... ok test_get_class_include_from_separate_ns_1 (tests.unit.build_tests.test_classgenerator.TestGetClassSeparateNamespace.test_get_class_include_from_separate_ns_1) Test that get_class correctly sets the name and includes types correctly across namespaces. ... ok test_get_class_include_from_separate_ns_2 (tests.unit.build_tests.test_classgenerator.TestGetClassSeparateNamespace.test_get_class_include_from_separate_ns_2) Test that get_class correctly sets the name and includes types correctly across namespaces. ... ok test_get_class_include_from_separate_ns_3 (tests.unit.build_tests.test_classgenerator.TestGetClassSeparateNamespace.test_get_class_include_from_separate_ns_3) Test that get_class correctly sets the name and includes types correctly across namespaces. ... ok test_get_class_include_from_separate_ns_4 (tests.unit.build_tests.test_classgenerator.TestGetClassSeparateNamespace.test_get_class_include_from_separate_ns_4) Test that get_class correctly sets the name and includes types correctly across namespaces. ... ok test_get_class_separate_ns (tests.unit.build_tests.test_classgenerator.TestGetClassSeparateNamespace.test_get_class_separate_ns) Test that get_class correctly sets the name and type hierarchy across namespaces. ... ok test_post_process (tests.unit.build_tests.test_classgenerator.TestMCIProcessFieldSpec.test_post_process) ... ok test_post_process_already_multi (tests.unit.build_tests.test_classgenerator.TestMCIProcessFieldSpec.test_post_process_already_multi) ... ok test_post_process_container (tests.unit.build_tests.test_classgenerator.TestMCIProcessFieldSpec.test_post_process_container) ... ok test_update_docval (tests.unit.build_tests.test_classgenerator.TestMCIProcessFieldSpec.test_update_docval) ... ok test_update_init_one_or_more (tests.unit.build_tests.test_classgenerator.TestMCIProcessFieldSpec.test_update_init_one_or_more) ... ok test_update_init_zero_or_more (tests.unit.build_tests.test_classgenerator.TestMCIProcessFieldSpec.test_update_init_zero_or_more) ... ok test_multi_container_post_init (tests.unit.build_tests.test_classgenerator.TestPostInitGetClass.test_multi_container_post_init) ... ok test_post_init (tests.unit.build_tests.test_classgenerator.TestPostInitGetClass.test_post_init) ... ok test_ascii_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_ascii_spec) ... ok test_bool_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_bool_spec) ... ok test_compound_type (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_compound_type) Test that convert_dtype passes through arguments if spec dtype is a list without any validation. ... ok test_convert_to_64bit_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_64bit_spec) Test that if given any value for a spec with a 64-bit dtype, convert_dtype will convert to the spec type. ... ok test_convert_to_bool_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_bool_spec) Test conversion of various types to bool. ... ok test_convert_to_float32_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_float32_spec) Test conversion of various types to float32. ... ok test_convert_to_int16_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_int16_spec) Test conversion of various types to int16. ... ok test_convert_to_int32_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_int32_spec) Test conversion of various types to int32. ... ok test_convert_to_uint16_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_uint16_spec) Test conversion of various types to uint16. ... ok test_convert_to_uint32_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_convert_to_uint32_spec) Test conversion of various types to uint32. ... ok test_dci_input (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_dci_input) ... ok test_isodate_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_isodate_spec) ... ok test_isodatetime_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_isodatetime_spec) ... ok test_no_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_no_spec) ... ok test_numeric_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_numeric_spec) ... ok test_override_type_int_restrict_precision (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_override_type_int_restrict_precision) ... ok test_override_type_none_to_bool (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_override_type_none_to_bool) ... ok test_override_type_numeric_to_uint (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_override_type_numeric_to_uint) ... ok test_override_type_numeric_to_uint_list (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_override_type_numeric_to_uint_list) ... ok test_text_spec (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_text_spec) ... ok test_value_none (tests.unit.build_tests.test_convert_dtype.TestConvertDtype.test_value_none) ... ok test_build (tests.unit.build_tests.test_io_manager.TestBuildManager.test_build) ... ok test_build_memoization (tests.unit.build_tests.test_io_manager.TestBuildManager.test_build_memoization) ... ok test_clear_cache (tests.unit.build_tests.test_io_manager.TestBuildManager.test_clear_cache) ... ok test_construct (tests.unit.build_tests.test_io_manager.TestBuildManager.test_construct) ... ok test_construct_memoization (tests.unit.build_tests.test_io_manager.TestBuildManager.test_construct_memoization) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNestedContainersNoSubgroups.test_build) Test default mapping for an Container that has an Container as an attribute value ... ok test_construct (tests.unit.build_tests.test_io_manager.TestNestedContainersNoSubgroups.test_construct) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroup.test_build) Test default mapping for an Container that has an Container as an attribute value ... ok test_construct (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroup.test_construct) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroupSubgroup.test_build) Test default mapping for an Container that has an Container as an attribute value ... ok test_construct (tests.unit.build_tests.test_io_manager.TestNestedContainersSubgroupSubgroup.test_construct) ... ok test_build (tests.unit.build_tests.test_io_manager.TestNoAttribute.test_build) Test that an error is raised when a spec is mapped to a non-existent container attribute. ... ok test_get_dt_container_cls (tests.unit.build_tests.test_io_manager.TestRetrieveContainerClass.test_get_dt_container_cls) ... ok test_get_dt_container_cls_no_namespace (tests.unit.build_tests.test_io_manager.TestRetrieveContainerClass.test_get_dt_container_cls_no_namespace) ... ok test_get_ns_dt (tests.unit.build_tests.test_io_manager.TestTypeMap.test_get_ns_dt) ... ok test_get_ns_dt_missing (tests.unit.build_tests.test_io_manager.TestTypeMap.test_get_ns_dt_missing) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestFixedAttributeValue.test_default_mapping) ... ok test_required_attr_missing (tests.unit.build_tests.test_io_map.TestFixedAttributeValue.test_required_attr_missing) Test mapping when one container has a required attribute with a fixed value. ... ok test_bad_name (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_bad_name) Test get_subspec on a builder that doesn't map to the spec. ... ok test_bad_name_no_data_type (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_bad_name_no_data_type) Test get_subspec on a builder without a data type that doesn't map to the spec. ... ok test_named_dataset (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_named_dataset) Test get_subspec on a builder that maps to a named dataset of the given spec. ... ok test_named_group (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_named_group) Test get_subspec on a builder that maps to a named subgroup of the given spec. ... ok test_named_link_data_type_inc (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_named_link_data_type_inc) Test get_subspec on a builder that maps to an named link. ... ok test_named_link_hierarchy_data_type_inc (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_named_link_hierarchy_data_type_inc) Test get_subspec on a builder that maps to an named link. ... ok test_unnamed_group_data_type_def (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_unnamed_group_data_type_def) Test get_subspec on a builder that maps to an unnamed subgroup of the given spec using data_type_def. ... ok test_unnamed_group_data_type_inc (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_unnamed_group_data_type_inc) Test get_subspec on a builder that maps to an unnamed subgroup of the given spec using data_type_inc. ... ok test_unnamed_link_data_type_inc (tests.unit.build_tests.test_io_map.TestGetSubSpec.test_unnamed_link_data_type_inc) Test get_subspec on a builder that maps to an unnamed link. ... ok test_build_broken_link_no_parent (tests.unit.build_tests.test_io_map.TestLinkedContainer.test_build_broken_link_no_parent) Test that building a container with a broken link that has no parent raises an error. ... ok test_build_broken_link_parent (tests.unit.build_tests.test_io_map.TestLinkedContainer.test_build_broken_link_parent) Test that building a container with a broken link that has a parent raises an error. ... expected failure test_build_child_link (tests.unit.build_tests.test_io_map.TestLinkedContainer.test_build_child_link) Test default mapping functionality when one container contains a child link to another container ... ok test_build_1d (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_1d) ... ok test_build_1d_h5py_2_dataset (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_1d_h5py_2_dataset) ... skipped 'Create dataset differently for h5py < 3' test_build_1d_h5py_3_dataset (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_1d_h5py_3_dataset) ... ok test_build_2d_lol (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_2d_lol) ... ok test_build_2d_ndarray (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_2d_ndarray) ... ok test_build_3d_h5py_2_dataset (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_3d_h5py_2_dataset) ... skipped 'Create dataset differently for h5py < 3' test_build_3d_h5py_3_dataset (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_3d_h5py_3_dataset) ... ok test_build_3d_lol (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_3d_lol) ... ok test_build_3d_ndarray (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_3d_ndarray) ... ok test_build_dataio (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_dataio) ... ok test_build_scalar (tests.unit.build_tests.test_io_map.TestMapStrings.test_build_scalar) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredAttribute.test_default_mapping) ... ok test_required_attr_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredAttribute.test_required_attr_missing) Test mapping when one container is missing a required attribute. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredAttributeRef.test_default_mapping) ... ok test_required_attr_ref_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredAttributeRef.test_required_attr_ref_missing) Test mapping when one container is missing a required attribute reference. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredDataset.test_default_mapping) ... ok test_required_dataset_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredDataset.test_required_dataset_missing) Test mapping when one container is missing a required dataset. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestMissingRequiredGroup.test_default_mapping) ... ok test_required_group_missing (tests.unit.build_tests.test_io_map.TestMissingRequiredGroup.test_required_group_missing) Test mapping when one container is missing a required group. ... ok test_bad_value (tests.unit.build_tests.test_io_map.TestObjectMapperBadValue.test_bad_value) Test that an error is raised if the container attribute value for a spec with a data type is not a container ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestObjectMapperContainer.test_default_mapping) ... ok test_default_mapping_keys (tests.unit.build_tests.test_io_map.TestObjectMapperContainer.test_default_mapping_keys) ... ok test_build (tests.unit.build_tests.test_io_map.TestObjectMapperNested.test_build) Test default mapping functionality when object attributes map to an attribute deeper ... ok test_construct (tests.unit.build_tests.test_io_map.TestObjectMapperNested.test_construct) Test default mapping functionality when object attributes map to an attribute ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestObjectMapperNested.test_default_mapping) ... ok test_default_mapping_keys (tests.unit.build_tests.test_io_map.TestObjectMapperNested.test_default_mapping_keys) ... ok test_remap_keys (tests.unit.build_tests.test_io_map.TestObjectMapperNested.test_remap_keys) ... ok test_build (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting.test_build) Test default mapping functionality when no attributes are nested ... ok test_build_empty (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting.test_build_empty) Test default mapping functionality when no attributes are nested ... ok test_construct (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting.test_construct) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting.test_default_mapping) ... ok test_default_mapping_keys (tests.unit.build_tests.test_io_map.TestObjectMapperNoNesting.test_default_mapping_keys) ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestOptionalEmptyGroup.test_default_mapping) ... ok test_optional_group_empty (tests.unit.build_tests.test_io_map.TestOptionalEmptyGroup.test_optional_group_empty) Test mapping when one container has an optional empty group. ... ok test_optional_group_not_empty (tests.unit.build_tests.test_io_map.TestOptionalEmptyGroup.test_optional_group_not_empty) Test mapping when one container has an optional not empty group. ... ok test_build_attr_ref (tests.unit.build_tests.test_io_map.TestReference.test_build_attr_ref) Test default mapping functionality when one container contains an attribute reference to another container. ... ok test_build_attr_ref_invalid (tests.unit.build_tests.test_io_map.TestReference.test_build_attr_ref_invalid) Test default mapping functionality when one container contains an attribute reference to another container. ... ok test_default_mapping (tests.unit.build_tests.test_io_map.TestRequiredEmptyGroup.test_default_mapping) ... ok test_required_group_empty (tests.unit.build_tests.test_io_map.TestRequiredEmptyGroup.test_required_group_empty) Test mapping when one container has a required empty group. ... ok test_get_map (tests.unit.build_tests.test_io_map.TestTypeMap.test_get_map) ... ok test_get_map_register (tests.unit.build_tests.test_io_map.TestTypeMap.test_get_map_register) ... ok test_get_map_unique_mappers (tests.unit.build_tests.test_io_map.TestTypeMap.test_get_map_unique_mappers) ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildCompoundDatasetOfReferences.test_build) Test default mapping functionality when no attributes are nested ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildDatasetOfReferencesUnbuiltTarget.test_build) Test default mapping functionality when no attributes are nested ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildTypedDatasetOfReferences.test_build) Test default mapping functionality when no attributes are nested ... ok test_build (tests.unit.build_tests.test_io_map_data.TestBuildUntypedDatasetOfReferences.test_build) Test default mapping functionality when no attributes are nested ... ok test_build_datachunkiterator (tests.unit.build_tests.test_io_map_data.TestDataIOEdgeCases.test_build_datachunkiterator) Test building of a dataset with data_type and no dtype with value DataChunkIterator. ... ok test_build_dataio (tests.unit.build_tests.test_io_map_data.TestDataIOEdgeCases.test_build_dataio) Test building of a dataset with data_type and no dtype with value DataIO. ... ok test_build_dataio_datachunkiterator (tests.unit.build_tests.test_io_map_data.TestDataIOEdgeCases.test_build_dataio_datachunkiterator) Test building of a dataset with no dtype and no data_type with value DataIO wrapping a DCI. ... ok test_append (tests.unit.build_tests.test_io_map_data.TestDataMap.test_append) ... ok test_build (tests.unit.build_tests.test_io_map_data.TestDataMap.test_build) Test default mapping functionality when no attributes are nested ... ok test_build_empty_data (tests.unit.build_tests.test_io_map_data.TestDataMap.test_build_empty_data) Test building of a Data object with empty data. ... ok test_extend (tests.unit.build_tests.test_io_map_data.TestDataMap.test_extend) ... ok test_construct_scalar_dataset (tests.unit.build_tests.test_io_map_data.TestDataMapScalar.test_construct_scalar_dataset) Test constructing a Data object with an h5py.Dataset with shape (1, ) for scalar spec. ... ok test_construct_scalar_compound_dataset (tests.unit.build_tests.test_io_map_data.TestDataMapScalarCompound.test_construct_scalar_compound_dataset) Test construct on a compound h5py.Dataset with shape (1, ) for scalar spec does not resolve the data. ... ok test_add_category (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_category) Test that we can correct a non-empty category to an existing table ... ok test_add_category_already_in_table (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_category_already_in_table) ... ok test_add_category_misaligned_rows (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_category_misaligned_rows) Test that we can correct a non-empty category to an existing table ... ok test_add_column (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_column) ... ok test_add_column_bad_category (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_column_bad_category) Test add column with bad category ... ok test_add_column_bad_length (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_column_bad_length) Test add column that is too short ... ok test_add_column_to_subcategory (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_column_to_subcategory) Test adding a column to a subcategory ... ok test_add_row (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_add_row) Test adding a row to a non_empty table ... ok test_dynamictable_region_to_aligneddynamictable (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_dynamictable_region_to_aligneddynamictable) Test to ensure data is being retrieved correctly when pointing to an AlignedDynamicTable. ... ok test_get_colnames (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_get_colnames) Test the AlignedDynamicTable.get_colnames function ... ok test_get_item (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_get_item) Test getting elements from the table ... ok test_init (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init) Test that just checks that populating the tables with data works correctly ... ok test_init_categories_without_category_tables_error (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_categories_without_category_tables_error) ... ok test_init_category_table_names_do_not_match_categories (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_category_table_names_do_not_match_categories) ... ok test_init_duplicate_category_table_name (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_duplicate_category_table_name) ... ok test_init_length_mismatch_between_categories_and_category_tables (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_length_mismatch_between_categories_and_category_tables) ... ok test_init_misaligned_category_tables (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_misaligned_category_tables) Test misaligned category tables ... ok test_init_with_bad_custom_categories (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_with_bad_custom_categories) Test that we cannot provide a category that is not a DynamicTable ... ok test_init_with_custom_empty_categories (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_with_custom_empty_categories) Test that we can create an empty table with custom categories ... ok test_init_with_custom_misaligned_categories (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_with_custom_misaligned_categories) Test that we cannot create an empty table with custom categories ... ok test_init_with_custom_nonempty_categories (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_with_custom_nonempty_categories) Test that we can create an empty table with custom categories ... ok test_init_with_custom_nonempty_categories_and_main (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_with_custom_nonempty_categories_and_main) Test that we can create a non-empty table with custom non-empty categories ... ok test_init_with_duplicate_custom_categories (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_init_with_duplicate_custom_categories) Test that we can create an empty table with custom categories ... ok test_nested_aligned_dynamic_table_not_allowed (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_nested_aligned_dynamic_table_not_allowed) Test that using and AlignedDynamicTable as category for an AlignedDynamicTable is not allowed ... ok test_round_trip_container (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_round_trip_container) Test read and write the container by itself ... ok test_to_dataframe (tests.unit.common.test_alignedtable.TestAlignedDynamicTableContainer.test_to_dataframe) Test that the to_dataframe method works ... ok test_base_types (tests.unit.common.test_common.TestCommonTypeMap.test_base_types) ... ok test_copy_ts_config (tests.unit.common.test_common.TestCommonTypeMap.test_copy_ts_config) ... ok test_write_cache_spec (tests.unit.common.test_common_io.TestCacheSpec.test_write_cache_spec) Roundtrip test for writing spec and reading it back in. ... ok test_write_cache_spec_injected (tests.unit.common.test_common_io.TestCacheSpec.test_write_cache_spec_injected) Roundtrip test for writing spec and reading it back in when HDF5IO is passed an open h5py.File. ... ok test_write_no_cache_spec (tests.unit.common.test_common_io.TestCacheSpec.test_write_no_cache_spec) Roundtrip test for not writing spec. ... ok test_gethdf5io (tests.unit.common.test_common_io.TestGetHdf5IO.test_gethdf5io) Test the get_hdf5io convenience method with manager=None. ... ok test_gethdf5io_manager (tests.unit.common.test_common_io.TestGetHdf5IO.test_gethdf5io_manager) Test the get_hdf5io convenience method with manager set. ... ok test_attribute (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_attribute) ... ok test_dynamic_column (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_dynamic_column) ... ok test_dynamic_table (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_dynamic_table) ... ok test_dynamic_table_region (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_dynamic_table_region) ... ok test_dynamic_table_region_bad_target_col (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_dynamic_table_region_bad_target_col) ... ok test_dynamic_table_region_non_dtr_target (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_dynamic_table_region_non_dtr_target) ... ok test_dynamic_table_region_optional (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_dynamic_table_region_optional) ... ok test_forbids_incorrect_col (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_forbids_incorrect_col) ... ok test_optional_col (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_optional_col) ... ok test_roundtrip (tests.unit.common.test_generate_table.TestDynamicDynamicTable.test_roundtrip) ... ok test_drop_id_columns (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_drop_id_columns) ... ok test_flatten_column_index (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_flatten_column_index) ... ok test_flatten_column_index_already_flat_index (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_flatten_column_index_already_flat_index) ... ok test_flatten_column_index_bad_maxlevels (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_flatten_column_index_bad_maxlevels) ... ok test_to_hierarchical_dataframe (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe) ... ok test_to_hierarchical_dataframe_empty_tables (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_empty_tables) ... ok test_to_hierarchical_dataframe_flat_table (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_flat_table) ... ok test_to_hierarchical_dataframe_indexed_data_list (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_indexed_data_list) ... ok test_to_hierarchical_dataframe_indexed_data_nparray (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_indexed_data_nparray) ... ok test_to_hierarchical_dataframe_indexed_dtr_on_last_level (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_indexed_dtr_on_last_level) ... ok test_to_hierarchical_dataframe_multilevel (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_multilevel) ... ok test_to_hierarchical_dataframe_no_dtr_on_top_level (tests.unit.common.test_linkedtables.TestHierarchicalTable.test_to_hierarchical_dataframe_no_dtr_on_top_level) ... ok test_get_foreign_column_in_main_and_category_table (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_foreign_column_in_main_and_category_table) ... ok test_get_foreign_columns (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_foreign_columns) ... ok test_get_foreign_columns_none (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_foreign_columns_none) Test false if there are no DynamicTableRegionColumns ... ok test_get_linked_tables (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_linked_tables) ... ok test_get_linked_tables_complex_link (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_linked_tables_complex_link) ... ok test_get_linked_tables_none (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_linked_tables_none) Test false if there are no DynamicTableRegionColumns ... ok test_get_linked_tables_simple_link (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_get_linked_tables_simple_link) ... ok test_has_foreign_column_in_main_table (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_has_foreign_column_in_main_table) ... ok test_has_foreign_columns_false (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_has_foreign_columns_false) Test false if there are no DynamicTableRegionColumns ... ok test_has_foreign_columns_in_category_tables (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_has_foreign_columns_in_category_tables) Test confirming working order for DynamicTableRegions in subtables ... ok test_to_hierarchical_dataframe (tests.unit.common.test_linkedtables.TestLinkedAlignedDynamicTables.test_to_hierarchical_dataframe) Test that converting an AlignedDynamicTable with links works ... ok test_get_foreign_columns (tests.unit.common.test_linkedtables.TestLinkedDynamicTables.test_get_foreign_columns) Test DynamicTable.get_foreign_columns ... ok test_get_linked_tables (tests.unit.common.test_linkedtables.TestLinkedDynamicTables.test_get_linked_tables) Test DynamicTable.get_linked_tables ... ok test_has_foreign_columns (tests.unit.common.test_linkedtables.TestLinkedDynamicTables.test_has_foreign_columns) Test DynamicTable.get_foreign_columns ... ok test_populate_table_hierarchy (tests.unit.common.test_linkedtables.TestLinkedDynamicTables.test_populate_table_hierarchy) Test that just checks that populating the tables with data works correctly ... ok test_roundtrip (tests.unit.common.test_multi.SimpleMultiContainerRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_multi.SimpleMultiContainerRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_ref (tests.unit.common.test_resources.TestHERD.test_add_ref) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_attribute (tests.unit.common.test_resources.TestHERD.test_add_ref_attribute) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_column_as_attribute (tests.unit.common.test_resources.TestHERD.test_add_ref_column_as_attribute) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_compound_data (tests.unit.common.test_resources.TestHERD.test_add_ref_compound_data) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_container_attr (tests.unit.common.test_resources.TestHERD.test_add_ref_container_attr) ... skipped 'optional LinkML module is not installed' test_add_ref_container_data (tests.unit.common.test_resources.TestHERD.test_add_ref_container_data) ... skipped 'optional LinkML module is not installed' test_add_ref_same_key_diff_objfield (tests.unit.common.test_resources.TestHERD.test_add_ref_same_key_diff_objfield) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_same_keyname (tests.unit.common.test_resources.TestHERD.test_add_ref_same_keyname) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_search_for_file (tests.unit.common.test_resources.TestHERD.test_add_ref_search_for_file) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_search_for_file_error (tests.unit.common.test_resources.TestHERD.test_add_ref_search_for_file_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_search_for_file_nested_parent (tests.unit.common.test_resources.TestHERD.test_add_ref_search_for_file_nested_parent) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_search_for_file_parent (tests.unit.common.test_resources.TestHERD.test_add_ref_search_for_file_parent) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_termset (tests.unit.common.test_resources.TestHERD.test_add_ref_termset) ... skipped 'optional LinkML module is not installed' test_add_ref_termset_attribute_none (tests.unit.common.test_resources.TestHERD.test_add_ref_termset_attribute_none) ... skipped 'optional LinkML module is not installed' test_add_ref_termset_bulk (tests.unit.common.test_resources.TestHERD.test_add_ref_termset_bulk) ... skipped 'optional LinkML module is not installed' test_add_ref_termset_data_object_error (tests.unit.common.test_resources.TestHERD.test_add_ref_termset_data_object_error) ... skipped 'optional LinkML module is not installed' test_add_ref_termset_data_object_list (tests.unit.common.test_resources.TestHERD.test_add_ref_termset_data_object_list) ... skipped 'optional LinkML module is not installed' test_add_ref_termset_missing_file_error (tests.unit.common.test_resources.TestHERD.test_add_ref_termset_missing_file_error) ... skipped 'optional LinkML module is not installed' test_add_ref_termset_missing_terms (tests.unit.common.test_resources.TestHERD.test_add_ref_termset_missing_terms) ... skipped 'optional LinkML module is not installed' test_add_ref_two_keys (tests.unit.common.test_resources.TestHERD.test_add_ref_two_keys) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_assert_external_resources_equal (tests.unit.common.test_resources.TestHERD.test_assert_external_resources_equal) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_check_object_field_add (tests.unit.common.test_resources.TestHERD.test_check_object_field_add) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_check_object_field_multi_error (tests.unit.common.test_resources.TestHERD.test_check_object_field_multi_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_check_object_field_multi_files (tests.unit.common.test_resources.TestHERD.test_check_object_field_multi_files) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_check_object_field_not_in_obj_table (tests.unit.common.test_resources.TestHERD.test_check_object_field_not_in_obj_table) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_check_termset_wrapper (tests.unit.common.test_resources.TestHERD.test_check_termset_wrapper) ... skipped 'optional LinkML module is not installed' test_entity_uri_error (tests.unit.common.test_resources.TestHERD.test_entity_uri_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_entity_uri_warning (tests.unit.common.test_resources.TestHERD.test_entity_uri_warning) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_entity (tests.unit.common.test_resources.TestHERD.test_get_entity) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_file_from_container (tests.unit.common.test_resources.TestHERD.test_get_file_from_container) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_file_from_container_error (tests.unit.common.test_resources.TestHERD.test_get_file_from_container_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_file_from_container_file_is_container (tests.unit.common.test_resources.TestHERD.test_get_file_from_container_file_is_container) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_obj_entities (tests.unit.common.test_resources.TestHERD.test_get_obj_entities) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_obj_entities_attribute (tests.unit.common.test_resources.TestHERD.test_get_obj_entities_attribute) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_obj_entities_file_none_container (tests.unit.common.test_resources.TestHERD.test_get_obj_entities_file_none_container) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_obj_entities_file_none_error (tests.unit.common.test_resources.TestHERD.test_get_obj_entities_file_none_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_obj_entities_file_none_not_container_deep_nested (tests.unit.common.test_resources.TestHERD.test_get_obj_entities_file_none_not_container_deep_nested) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_obj_entities_file_none_not_container_nested (tests.unit.common.test_resources.TestHERD.test_get_obj_entities_file_none_not_container_nested) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_object_type (tests.unit.common.test_resources.TestHERD.test_get_object_type) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_object_type_all_instances (tests.unit.common.test_resources.TestHERD.test_get_object_type_all_instances) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_zip_directory (tests.unit.common.test_resources.TestHERD.test_get_zip_directory) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_invalid_entity_assert_external_resources_equal (tests.unit.common.test_resources.TestHERD.test_invalid_entity_assert_external_resources_equal) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_invalid_keys_assert_external_resources_equal (tests.unit.common.test_resources.TestHERD.test_invalid_keys_assert_external_resources_equal) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_invalid_object_keys_assert_external_resources_equal (tests.unit.common.test_resources.TestHERD.test_invalid_object_keys_assert_external_resources_equal) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_invalid_objects_assert_external_resources_equal (tests.unit.common.test_resources.TestHERD.test_invalid_objects_assert_external_resources_equal) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_key_without_entity_error (tests.unit.common.test_resources.TestHERD.test_key_without_entity_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_object_key_existing_key_new_object (tests.unit.common.test_resources.TestHERD.test_object_key_existing_key_new_object) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_object_key_unqiueness (tests.unit.common.test_resources.TestHERD.test_object_key_unqiueness) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_resuse_entity_different_key (tests.unit.common.test_resources.TestHERD.test_resuse_entity_different_key) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_reuse_key_reuse_entity_new (tests.unit.common.test_resources.TestHERD.test_reuse_key_reuse_entity_new) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_reuse_key_string (tests.unit.common.test_resources.TestHERD.test_reuse_key_string) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip_entity_key_value_error_entity (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip_entity_key_value_error_entity) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip_entity_key_value_error_key (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip_entity_key_value_error_key) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip_entity_value_error (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip_entity_value_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip_object_keys_key_idx_value_error (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip_object_keys_key_idx_value_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip_object_keys_object_idx_value_error (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip_object_keys_object_idx_value_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_and_from_zip_object_value_error (tests.unit.common.test_resources.TestHERD.test_to_and_from_zip_object_value_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_to_dataframe (tests.unit.common.test_resources.TestHERD.test_to_dataframe) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key (tests.unit.common.test_resources.TestHERDGetKey.test_get_key) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_bad_arg (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_bad_arg) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_file_container_provided (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_file_container_provided) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_multiple (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_multiple) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_no_file_container_provided (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_no_file_container_provided) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_no_file_deep_nested_container_provided (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_no_file_deep_nested_container_provided) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_no_file_error (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_no_file_error) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_no_file_nested_container_provided (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_no_file_nested_container_provided) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_key_no_key_found (tests.unit.common.test_resources.TestHERDGetKey.test_get_key_no_key_found) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_deep_nested (tests.unit.common.test_resources.TestHERDNestedAttributes.test_add_ref_deep_nested) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_ref_nested (tests.unit.common.test_resources.TestHERDNestedAttributes.test_add_ref_nested) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_2d_data (tests.unit.common.test_sparse.TestCSRMatrix.test_2d_data) ... ok test_array_bad_dim (tests.unit.common.test_sparse.TestCSRMatrix.test_array_bad_dim) ... ok test_constructor_bad_indices (tests.unit.common.test_sparse.TestCSRMatrix.test_constructor_bad_indices) ... ok test_constructor_bad_indices_dim (tests.unit.common.test_sparse.TestCSRMatrix.test_constructor_bad_indices_dim) ... ok test_constructor_bad_shape (tests.unit.common.test_sparse.TestCSRMatrix.test_constructor_bad_shape) ... ok test_constructor_indices_missing (tests.unit.common.test_sparse.TestCSRMatrix.test_constructor_indices_missing) ... ok test_from_dense_2D_array (tests.unit.common.test_sparse.TestCSRMatrix.test_from_dense_2D_array) ... ok test_from_sparse_matrix (tests.unit.common.test_sparse.TestCSRMatrix.test_from_sparse_matrix) ... ok test_getattrs (tests.unit.common.test_sparse.TestCSRMatrix.test_getattrs) ... ok test_to_spmat (tests.unit.common.test_sparse.TestCSRMatrix.test_to_spmat) ... ok test_valueerror_from_ndarray (tests.unit.common.test_sparse.TestCSRMatrix.test_valueerror_from_ndarray) ... ok test_valueerror_missing_indptr_indices_or_shape (tests.unit.common.test_sparse.TestCSRMatrix.test_valueerror_missing_indptr_indices_or_shape) ... ok test_valueerror_non_1d_indptr_or_indicies (tests.unit.common.test_sparse.TestCSRMatrix.test_valueerror_non_1d_indptr_or_indicies) ... ok test_valueerror_non_2D_shape (tests.unit.common.test_sparse.TestCSRMatrix.test_valueerror_non_2D_shape) ... ok test_valueerror_non_int_indptr_or_indicies (tests.unit.common.test_sparse.TestCSRMatrix.test_valueerror_non_int_indptr_or_indicies) ... ok test_roundtrip (tests.unit.common.test_sparse.TestCSRMatrixRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_sparse.TestCSRMatrixRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_roundtrip (tests.unit.common.test_sparse.TestCSRMatrixRoundTripFromLists.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_sparse.TestCSRMatrixRoundTripFromLists.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_get_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_int) ... ok test_get_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_list) ... ok test_get_list_single (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_list_single) ... ok test_get_nested_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nested_int) ... ok test_get_nested_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nested_list) ... ok test_get_nested_list_single (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nested_list_single) ... ok test_get_nested_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nested_slice) ... ok test_get_nodf_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nodf_int) ... ok test_get_nodf_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nodf_list) ... ok test_get_nodf_list_single (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nodf_list_single) ... ok test_get_nodf_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_nodf_slice) ... ok test_get_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_get_slice) ... ok test_getitem_badcol (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_badcol) ... ok test_getitem_int (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_int) ... ok test_getitem_int_str (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_int_str) Test DynamicTableRegion.__getitem__ with (int, str). ... ok test_getitem_list (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_list) ... ok test_getitem_list_single (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_list_single) ... ok test_getitem_oor (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_oor) ... ok test_getitem_slice (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_slice) ... ok test_getitem_str (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_getitem_str) Test DynamicTableRegion.__getitem__ with str. ... ok test_roundtrip (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.DynamicTableRegionRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_bad_dtype (tests.unit.common.test_table.TestBadElementIdentifiers.test_bad_dtype) ... ok test_dataio_dci_ok (tests.unit.common.test_table.TestBadElementIdentifiers.test_dataio_dci_ok) ... ok test_dci_float_bad (tests.unit.common.test_table.TestBadElementIdentifiers.test_dci_float_bad) ... ok test_dci_int_ok (tests.unit.common.test_table.TestBadElementIdentifiers.test_dci_int_ok) ... ok test_double_index (tests.unit.common.test_table.TestDTDoubleIndex.test_double_index) ... ok test_double_index_colnames (tests.unit.common.test_table.TestDTDoubleIndex.test_double_index_colnames) ... ok test_double_index_reverse (tests.unit.common.test_table.TestDTDoubleIndex.test_double_index_reverse) ... ok test_double_index_reverse_colnames (tests.unit.common.test_table.TestDTDoubleIndex.test_double_index_reverse_colnames) ... ok test_index (tests.unit.common.test_table.TestDTDoubleIndexSkipMiddle.test_index) ... ok test_dtr_references (tests.unit.common.test_table.TestDTRReferences.test_dtr_references) Test roundtrip of a table with a ragged DTR to another table containing a column of references. ... ok test_roundtrip (tests.unit.common.test_table.TestDataIOColumns.test_roundtrip) ... ok test_roundtrip_export (tests.unit.common.test_table.TestDataIOColumns.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_append (tests.unit.common.test_table.TestDataIOIndex.test_append) Write the container to an HDF5 file, read the container from the file, and append to it. ... ok test_roundtrip (tests.unit.common.test_table.TestDataIOIndex.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDataIOIndex.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_roundtrip (tests.unit.common.test_table.TestDataIOIndexedColumns.test_roundtrip) ... ok test_roundtrip_export (tests.unit.common.test_table.TestDataIOIndexedColumns.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_vector (tests.unit.common.test_table.TestDoubleIndex.test_add_vector) ... ok test_index (tests.unit.common.test_table.TestDoubleIndex.test_index) ... ok test_roundtrip (tests.unit.common.test_table.TestDoubleIndexRoundtrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDoubleIndexRoundtrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_col_validate (tests.unit.common.test_table.TestDynamicTable.test_add_col_validate) ... skipped 'optional LinkML module is not installed' test_add_col_validate_bad_data (tests.unit.common.test_table.TestDynamicTable.test_add_col_validate_bad_data) ... skipped 'optional LinkML module is not installed' test_add_column (tests.unit.common.test_table.TestDynamicTable.test_add_column) ... ok test_add_column_auto_index_bool (tests.unit.common.test_table.TestDynamicTable.test_add_column_auto_index_bool) Add a column as a list of lists after we have already added data so that we need to create a single VectorIndex ... ok test_add_column_auto_index_int (tests.unit.common.test_table.TestDynamicTable.test_add_column_auto_index_int) Add a column as a list of lists after we have already added data so that we need to create a single VectorIndex ... ok test_add_column_auto_multi_index_int (tests.unit.common.test_table.TestDynamicTable.test_add_column_auto_multi_index_int) Add a column as a list of lists of lists after we have already added data so that we need to create a ... ok test_add_column_auto_multi_index_int_bad_index_levels (tests.unit.common.test_table.TestDynamicTable.test_add_column_auto_multi_index_int_bad_index_levels) Add a column as a list of lists if lists after we have already added data so that we need to create a ... ok test_add_column_auto_multi_index_int_with_empty_slots (tests.unit.common.test_table.TestDynamicTable.test_add_column_auto_multi_index_int_with_empty_slots) Add a column as a list of lists of lists after we have already added data so that we need to create 2 ... ok test_add_column_existing_attr (tests.unit.common.test_table.TestDynamicTable.test_add_column_existing_attr) ... ok test_add_column_multi_index (tests.unit.common.test_table.TestDynamicTable.test_add_column_multi_index) ... ok test_add_column_twice (tests.unit.common.test_table.TestDynamicTable.test_add_column_twice) ... ok test_add_column_vectorindex (tests.unit.common.test_table.TestDynamicTable.test_add_column_vectorindex) ... ok test_add_column_without_required_index (tests.unit.common.test_table.TestDynamicTable.test_add_column_without_required_index) Add a column with different element lengths without specifying an index parameter ... ok test_add_column_without_required_index_and_no_ragged_check (tests.unit.common.test_table.TestDynamicTable.test_add_column_without_required_index_and_no_ragged_check) Add a column with different element lengths without checking for raggedness ... ok test_add_ref_wrapped_array_append (tests.unit.common.test_table.TestDynamicTable.test_add_ref_wrapped_array_append) ... skipped 'optional LinkML module is not installed' test_add_ref_wrapped_array_extend (tests.unit.common.test_table.TestDynamicTable.test_add_ref_wrapped_array_extend) ... skipped 'optional LinkML module is not installed' test_add_ref_wrapped_compound_data_append (tests.unit.common.test_table.TestDynamicTable.test_add_ref_wrapped_compound_data_append) ... skipped 'optional LinkML module is not installed' test_add_ref_wrapped_compound_data_extend (tests.unit.common.test_table.TestDynamicTable.test_add_ref_wrapped_compound_data_extend) ... skipped 'optional LinkML module is not installed' test_add_row (tests.unit.common.test_table.TestDynamicTable.test_add_row) ... ok test_add_row_validate (tests.unit.common.test_table.TestDynamicTable.test_add_row_validate) ... skipped 'optional LinkML module is not installed' test_add_row_validate_bad_data_all_col (tests.unit.common.test_table.TestDynamicTable.test_add_row_validate_bad_data_all_col) ... skipped 'optional LinkML module is not installed' test_add_row_validate_bad_data_one_col (tests.unit.common.test_table.TestDynamicTable.test_add_row_validate_bad_data_one_col) ... skipped 'optional LinkML module is not installed' test_add_row_without_required_index (tests.unit.common.test_table.TestDynamicTable.test_add_row_without_required_index) Add rows with different element lengths without specifying an index parameter ... ok test_add_row_without_required_index_and_no_ragged_check (tests.unit.common.test_table.TestDynamicTable.test_add_row_without_required_index_and_no_ragged_check) Add rows with different element lengths without checking for raggedness ... ok test_array_append_error (tests.unit.common.test_table.TestDynamicTable.test_array_append_error) ... skipped 'optional LinkML module is not installed' test_auto_multi_index (tests.unit.common.test_table.TestDynamicTable.test_auto_multi_index) ... ok test_auto_multi_index_required (tests.unit.common.test_table.TestDynamicTable.test_auto_multi_index_required) ... ok test_bad_id_type_error (tests.unit.common.test_table.TestDynamicTable.test_bad_id_type_error) ... ok test_colnames_none (tests.unit.common.test_table.TestDynamicTable.test_colnames_none) ... ok test_compound_data_append (tests.unit.common.test_table.TestDynamicTable.test_compound_data_append) ... ok test_compound_data_extend (tests.unit.common.test_table.TestDynamicTable.test_compound_data_extend) ... ok test_constructor_ElementIdentifier_ids (tests.unit.common.test_table.TestDynamicTable.test_constructor_ElementIdentifier_ids) ... ok test_constructor_all_columns_are_iterators (tests.unit.common.test_table.TestDynamicTable.test_constructor_all_columns_are_iterators) All columns are specified via AbstractDataChunkIterator but no id's are given. ... ok test_constructor_bad_columns (tests.unit.common.test_table.TestDynamicTable.test_constructor_bad_columns) ... ok test_constructor_colnames (tests.unit.common.test_table.TestDynamicTable.test_constructor_colnames) Test that passing colnames correctly sets the order of the columns. ... ok test_constructor_colnames_no_columns (tests.unit.common.test_table.TestDynamicTable.test_constructor_colnames_no_columns) Test that passing colnames without columns raises an error. ... ok test_constructor_colnames_vectorindex (tests.unit.common.test_table.TestDynamicTable.test_constructor_colnames_vectorindex) Test that passing colnames with a VectorIndex column puts the index in the right location in columns. ... ok test_constructor_colnames_vectorindex_rev (tests.unit.common.test_table.TestDynamicTable.test_constructor_colnames_vectorindex_rev) Test that passing colnames with a VectorIndex column puts the index in the right location in columns. ... ok test_constructor_dup_index (tests.unit.common.test_table.TestDynamicTable.test_constructor_dup_index) Test that passing two indices for the same column raises an error. ... ok test_constructor_ids (tests.unit.common.test_table.TestDynamicTable.test_constructor_ids) ... ok test_constructor_ids_bad_ids (tests.unit.common.test_table.TestDynamicTable.test_constructor_ids_bad_ids) ... ok test_constructor_ids_default (tests.unit.common.test_table.TestDynamicTable.test_constructor_ids_default) ... ok test_constructor_index_missing_target (tests.unit.common.test_table.TestDynamicTable.test_constructor_index_missing_target) Test that passing an index without its target raises an error. ... ok test_constructor_spec (tests.unit.common.test_table.TestDynamicTable.test_constructor_spec) ... ok test_constructor_table_columns (tests.unit.common.test_table.TestDynamicTable.test_constructor_table_columns) ... ok test_constructor_unequal_length_columns (tests.unit.common.test_table.TestDynamicTable.test_constructor_unequal_length_columns) ... ok test_enforce_unique_id_error (tests.unit.common.test_table.TestDynamicTable.test_enforce_unique_id_error) ... ok test_eq (tests.unit.common.test_table.TestDynamicTable.test_eq) ... ok test_eq_bad_type (tests.unit.common.test_table.TestDynamicTable.test_eq_bad_type) ... ok test_eq_diff_desc (tests.unit.common.test_table.TestDynamicTable.test_eq_diff_desc) ... ok test_eq_diff_missing_col (tests.unit.common.test_table.TestDynamicTable.test_eq_diff_missing_col) ... ok test_eq_diff_name (tests.unit.common.test_table.TestDynamicTable.test_eq_diff_name) ... ok test_eq_from_df (tests.unit.common.test_table.TestDynamicTable.test_eq_from_df) ... ok test_extra_columns (tests.unit.common.test_table.TestDynamicTable.test_extra_columns) ... ok test_from_dataframe (tests.unit.common.test_table.TestDynamicTable.test_from_dataframe) ... ok test_from_dataframe_dup_attr (tests.unit.common.test_table.TestDynamicTable.test_from_dataframe_dup_attr) Test that when a DynamicTable is generated from a dataframe where one of the column names is an existing ... ok test_from_dataframe_eq (tests.unit.common.test_table.TestDynamicTable.test_from_dataframe_eq) ... ok test_get (tests.unit.common.test_table.TestDynamicTable.test_get) ... ok test_get_item (tests.unit.common.test_table.TestDynamicTable.test_get_item) ... ok test_get_not_found (tests.unit.common.test_table.TestDynamicTable.test_get_not_found) ... ok test_get_not_found_default (tests.unit.common.test_table.TestDynamicTable.test_get_not_found_default) ... ok test_getitem_col_select_and_row_slice (tests.unit.common.test_table.TestDynamicTable.test_getitem_col_select_and_row_slice) ... ok test_getitem_column (tests.unit.common.test_table.TestDynamicTable.test_getitem_column) ... ok test_getitem_invalid_keytype (tests.unit.common.test_table.TestDynamicTable.test_getitem_invalid_keytype) ... ok test_getitem_list_idx (tests.unit.common.test_table.TestDynamicTable.test_getitem_list_idx) ... ok test_getitem_point_idx (tests.unit.common.test_table.TestDynamicTable.test_getitem_point_idx) ... ok test_getitem_point_idx_colidx (tests.unit.common.test_table.TestDynamicTable.test_getitem_point_idx_colidx) ... ok test_getitem_point_idx_colname (tests.unit.common.test_table.TestDynamicTable.test_getitem_point_idx_colname) ... ok test_getitem_row_num (tests.unit.common.test_table.TestDynamicTable.test_getitem_row_num) ... ok test_getitem_row_slice (tests.unit.common.test_table.TestDynamicTable.test_getitem_row_slice) ... ok test_getitem_row_slice_with_step (tests.unit.common.test_table.TestDynamicTable.test_getitem_row_slice_with_step) ... ok test_id_search (tests.unit.common.test_table.TestDynamicTable.test_id_search) ... ok test_index_out_of_bounds (tests.unit.common.test_table.TestDynamicTable.test_index_out_of_bounds) ... ok test_init_columns_existing_attr (tests.unit.common.test_table.TestDynamicTable.test_init_columns_existing_attr) ... ok test_missing_columns (tests.unit.common.test_table.TestDynamicTable.test_missing_columns) ... ok test_multidim_col (tests.unit.common.test_table.TestDynamicTable.test_multidim_col) ... ok test_multidim_col_one_elt_list (tests.unit.common.test_table.TestDynamicTable.test_multidim_col_one_elt_list) ... ok test_multidim_col_one_elt_tuple (tests.unit.common.test_table.TestDynamicTable.test_multidim_col_one_elt_tuple) ... ok test_nd_array_to_df (tests.unit.common.test_table.TestDynamicTable.test_nd_array_to_df) ... ok test_no_df_nested (tests.unit.common.test_table.TestDynamicTable.test_no_df_nested) ... ok test_not_enforce_unique_id_error (tests.unit.common.test_table.TestDynamicTable.test_not_enforce_unique_id_error) ... ok test_pandas_roundtrip (tests.unit.common.test_table.TestDynamicTable.test_pandas_roundtrip) ... ok test_repr (tests.unit.common.test_table.TestDynamicTable.test_repr) ... ok test_repr_html (tests.unit.common.test_table.TestDynamicTable.test_repr_html) ... ok test_to_dataframe (tests.unit.common.test_table.TestDynamicTable.test_to_dataframe) ... ok test_enum (tests.unit.common.test_table.TestDynamicTableAddEnum.test_enum) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_enum_index (tests.unit.common.test_table.TestDynamicTableAddEnum.test_enum_index) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableAddEnumRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableAddEnumRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableAddIndexRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableAddIndexRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_opt_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column) Test that adding an optional column from __columns__ with matching specs except for description works. ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_opt_column_after_data (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_after_data) Test that adding an optional column from __columns__ with data works. ... ok test_add_opt_column_mismatched_col_cls (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_mismatched_col_cls) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_index_data (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_mismatched_index_data) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_index_true (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_mismatched_index_true) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_table_table (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_mismatched_table_table) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_mismatched_table_true (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_mismatched_table_true) Test that adding an optional column from __columns__ with non-matched table raises a warning. ... ok test_add_opt_column_twice (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_column_twice) Test that adding an optional column from __columns__ twice fails the second time. ... ok test_add_opt_ind_column_after_data (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_opt_ind_column_after_data) Test that adding an optional, indexed column from __columns__ with data works. ... ok test_add_req_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_req_column) Test that adding a required column from __columns__ raises an error. ... ok test_add_req_ind_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_req_ind_column) Test that adding a required, indexed column from __columns__ raises an error. ... ok test_add_row_opt_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_row_opt_column) Test that adding a row with an optional column works. ... ok test_add_row_opt_column_after_data (tests.unit.common.test_table.TestDynamicTableClassColumns.test_add_row_opt_column_after_data) Test that adding a row with an optional column after adding a row without the column raises an error. ... ok test_bad_predefined_columns (tests.unit.common.test_table.TestDynamicTableClassColumns.test_bad_predefined_columns) Test that gathering columns across a type hierarchy works. ... ok test_gather_columns_inheritance (tests.unit.common.test_table.TestDynamicTableClassColumns.test_gather_columns_inheritance) Test that gathering columns across a type hierarchy works. ... ok test_init (tests.unit.common.test_table.TestDynamicTableClassColumns.test_init) Test that required columns, and not optional columns, in __columns__ are created on init. ... ok test_init_columns_add_dup_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_init_columns_add_dup_column) Test that passing two columns with the same name raises an error. ... ok test_init_columns_add_opt_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_init_columns_add_opt_column) Test that passing an optional column to init works. ... ok test_init_columns_add_req_column (tests.unit.common.test_table.TestDynamicTableClassColumns.test_init_columns_add_req_column) Test that passing a required column to init works. ... ok test_init_columns_add_req_column_mismatch_index (tests.unit.common.test_table.TestDynamicTableClassColumns.test_init_columns_add_req_column_mismatch_index) Test that passing a required column that does not match the predefined column specs raises an error. ... ok test_init_columns_add_req_column_mismatch_table (tests.unit.common.test_table.TestDynamicTableClassColumns.test_init_columns_add_req_column_mismatch_table) Test that passing a required column that does not match the predefined column specs raises an error. ... ok test_no_set_target_tables (tests.unit.common.test_table.TestDynamicTableClassColumns.test_no_set_target_tables) Test that the target table of a predefined DTR column is None. ... ok test_set_target_tables (tests.unit.common.test_table.TestDynamicTableClassColumns.test_set_target_tables) Test setting target tables for predefined DTR columns. ... ok test_set_target_tables_bad_init_col (tests.unit.common.test_table.TestDynamicTableClassColumns.test_set_target_tables_bad_init_col) Test setting target tables for predefined, required non-DTR columns. ... ok test_set_target_tables_bad_opt_col (tests.unit.common.test_table.TestDynamicTableClassColumns.test_set_target_tables_bad_opt_col) Test setting target tables for predefined, optional non-DTR columns. ... ok test_set_target_tables_existing_col_match (tests.unit.common.test_table.TestDynamicTableClassColumns.test_set_target_tables_existing_col_match) Test setting target tables for an existing DTR column with a matching, existing target table. ... ok test_set_target_tables_existing_col_mismatch (tests.unit.common.test_table.TestDynamicTableClassColumns.test_set_target_tables_existing_col_mismatch) Test setting target tables for an existing DTR column with a mismatched, existing target table. ... ok test_set_target_tables_unknown_col (tests.unit.common.test_table.TestDynamicTableClassColumns.test_set_target_tables_unknown_col) Test setting target tables for unknown columns. ... ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableInitIndexRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableInitIndexRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_dynamic_table_region_getitem_bad_index (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_getitem_bad_index) ... ok test_dynamic_table_region_getitem_single_cell (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_getitem_single_cell) ... ok test_dynamic_table_region_getitem_single_row_by_index (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_getitem_single_row_by_index) ... ok test_dynamic_table_region_getitem_slice (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_getitem_slice) ... ok test_dynamic_table_region_getitem_slice_of_column (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_getitem_slice_of_column) ... ok test_dynamic_table_region_iteration (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_iteration) ... ok test_dynamic_table_region_set_table_prop (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_set_table_prop) ... ok test_dynamic_table_region_set_table_prop_to_none (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_set_table_prop_to_none) ... ok test_dynamic_table_region_set_with_bad_data (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_set_with_bad_data) ... skipped 'we no longer check data contents for performance reasons' test_dynamic_table_region_shape (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_shape) ... ok test_dynamic_table_region_table_prop (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_table_prop) ... ok test_dynamic_table_region_to_dataframe (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_to_dataframe) ... ok test_dynamic_table_region_to_dataframe_exclude_cols (tests.unit.common.test_table.TestDynamicTableRegion.test_dynamic_table_region_to_dataframe_exclude_cols) ... ok test_indexed_dynamic_table_region (tests.unit.common.test_table.TestDynamicTableRegion.test_indexed_dynamic_table_region) ... ok test_no_df_nested (tests.unit.common.test_table.TestDynamicTableRegion.test_no_df_nested) ... ok test_repr (tests.unit.common.test_table.TestDynamicTableRegion.test_repr) ... ok test_index_out_of_bounds (tests.unit.common.test_table.TestDynamicTableRoundTrip.test_index_out_of_bounds) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_roundtrip (tests.unit.common.test_table.TestDynamicTableRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_roundtrip_export (tests.unit.common.test_table.TestDynamicTableRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_columns (tests.unit.common.test_table.TestDynamicTableSubclassColumns.test_columns) ... ok test_identifier_search_single_int (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_single_int) ... ok test_identifier_search_single_int_not_found (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_single_int_not_found) ... ok test_identifier_search_single_list (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_single_list) ... ok test_identifier_search_single_list_all_match (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_single_list_all_match) ... ok test_identifier_search_single_list_not_found (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_single_list_not_found) ... ok test_identifier_search_single_list_partial_match (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_single_list_partial_match) ... ok test_identifier_search_with_bad_ids (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_with_bad_ids) ... ok test_identifier_search_with_element_identifier (tests.unit.common.test_table.TestElementIdentifiers.test_identifier_search_with_element_identifier) ... ok test_roundtrip (tests.unit.common.test_table.TestEmptyDynamicTableRoundTrip.test_roundtrip) Test whether the container read from a written file is the same as the original file. ... ok test_roundtrip_export (tests.unit.common.test_table.TestEmptyDynamicTableRoundTrip.test_roundtrip_export) Test whether the container read from a written and then exported file is the same as the original file. ... ok test_add_row (tests.unit.common.test_table.TestEnumData.test_add_row) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_row_index (tests.unit.common.test_table.TestEnumData.test_add_row_index) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get (tests.unit.common.test_table.TestEnumData.test_get) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_2d (tests.unit.common.test_table.TestEnumData.test_get_2d) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_2d_w_2d (tests.unit.common.test_table.TestEnumData.test_get_2d_w_2d) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_list (tests.unit.common.test_table.TestEnumData.test_get_list) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_list_indices (tests.unit.common.test_table.TestEnumData.test_get_list_indices) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_get_list_join (tests.unit.common.test_table.TestEnumData.test_get_list_join) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_init (tests.unit.common.test_table.TestEnumData.test_init) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_2d_row_index (tests.unit.common.test_table.TestIndexedEnumData.test_add_2d_row_index) ... skipped 'feature is not yet supported' test_add_row (tests.unit.common.test_table.TestIndexedEnumData.test_add_row) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_add_row_index (tests.unit.common.test_table.TestIndexedEnumData.test_add_row_index) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_init (tests.unit.common.test_table.TestIndexedEnumData.test_init) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_array (tests.unit.common.test_table.TestSelectionArray.test_array) ... ok test_array_nested (tests.unit.common.test_table.TestSelectionArray.test_array_nested) ... ok test_array_no_df (tests.unit.common.test_table.TestSelectionArray.test_array_no_df) ... ok test_array_single (tests.unit.common.test_table.TestSelectionArray.test_array_single) ... ok test_array_single_nested (tests.unit.common.test_table.TestSelectionArray.test_array_single_nested) ... ok test_array_single_no_df (tests.unit.common.test_table.TestSelectionArray.test_array_single_no_df) ... ok test_list (tests.unit.common.test_table.TestSelectionArray.test_list) ... ok test_list_nested (tests.unit.common.test_table.TestSelectionArray.test_list_nested) ... ok test_list_no_df (tests.unit.common.test_table.TestSelectionArray.test_list_no_df) ... ok test_list_single (tests.unit.common.test_table.TestSelectionArray.test_list_single) ... ok test_list_single_nested (tests.unit.common.test_table.TestSelectionArray.test_list_single_nested) ... ok test_list_single_no_df (tests.unit.common.test_table.TestSelectionArray.test_list_single_no_df) ... ok test_single_item (tests.unit.common.test_table.TestSelectionArray.test_single_item) ... ok test_single_item_nested (tests.unit.common.test_table.TestSelectionArray.test_single_item_nested) ... ok test_single_item_no_df (tests.unit.common.test_table.TestSelectionArray.test_single_item_no_df) ... ok test_slice (tests.unit.common.test_table.TestSelectionArray.test_slice) ... ok test_slice_nested (tests.unit.common.test_table.TestSelectionArray.test_slice_nested) ... ok test_slice_no_df (tests.unit.common.test_table.TestSelectionArray.test_slice_no_df) ... ok test_slice_single (tests.unit.common.test_table.TestSelectionArray.test_slice_single) ... ok test_slice_single_nested (tests.unit.common.test_table.TestSelectionArray.test_slice_single_nested) ... ok test_slice_single_no_df (tests.unit.common.test_table.TestSelectionArray.test_slice_single_no_df) ... ok test_to_dataframe (tests.unit.common.test_table.TestSelectionArray.test_to_dataframe) ... ok test_to_dataframe_nested (tests.unit.common.test_table.TestSelectionArray.test_to_dataframe_nested) ... ok test_array (tests.unit.common.test_table.TestSelectionH5Dataset.test_array) ... ok test_array_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_array_nested) ... ok test_array_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_array_no_df) ... ok test_array_single (tests.unit.common.test_table.TestSelectionH5Dataset.test_array_single) ... ok test_array_single_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_array_single_nested) ... ok test_array_single_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_array_single_no_df) ... ok test_list (tests.unit.common.test_table.TestSelectionH5Dataset.test_list) ... ok test_list_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_list_nested) ... ok test_list_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_list_no_df) ... ok test_list_single (tests.unit.common.test_table.TestSelectionH5Dataset.test_list_single) ... ok test_list_single_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_list_single_nested) ... ok test_list_single_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_list_single_no_df) ... ok test_single_item (tests.unit.common.test_table.TestSelectionH5Dataset.test_single_item) ... ok test_single_item_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_single_item_nested) ... ok test_single_item_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_single_item_no_df) ... ok test_slice (tests.unit.common.test_table.TestSelectionH5Dataset.test_slice) ... ok test_slice_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_slice_nested) ... ok test_slice_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_slice_no_df) ... ok test_slice_single (tests.unit.common.test_table.TestSelectionH5Dataset.test_slice_single) ... ok test_slice_single_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_slice_single_nested) ... ok test_slice_single_no_df (tests.unit.common.test_table.TestSelectionH5Dataset.test_slice_single_no_df) ... ok test_to_dataframe (tests.unit.common.test_table.TestSelectionH5Dataset.test_to_dataframe) ... ok test_to_dataframe_nested (tests.unit.common.test_table.TestSelectionH5Dataset.test_to_dataframe_nested) ... ok test_array (tests.unit.common.test_table.TestSelectionList.test_array) ... ok test_array_nested (tests.unit.common.test_table.TestSelectionList.test_array_nested) ... ok test_array_no_df (tests.unit.common.test_table.TestSelectionList.test_array_no_df) ... ok test_array_single (tests.unit.common.test_table.TestSelectionList.test_array_single) ... ok test_array_single_nested (tests.unit.common.test_table.TestSelectionList.test_array_single_nested) ... ok test_array_single_no_df (tests.unit.common.test_table.TestSelectionList.test_array_single_no_df) ... ok test_list (tests.unit.common.test_table.TestSelectionList.test_list) ... ok test_list_nested (tests.unit.common.test_table.TestSelectionList.test_list_nested) ... ok test_list_no_df (tests.unit.common.test_table.TestSelectionList.test_list_no_df) ... ok test_list_single (tests.unit.common.test_table.TestSelectionList.test_list_single) ... ok test_list_single_nested (tests.unit.common.test_table.TestSelectionList.test_list_single_nested) ... ok test_list_single_no_df (tests.unit.common.test_table.TestSelectionList.test_list_single_no_df) ... ok test_single_item (tests.unit.common.test_table.TestSelectionList.test_single_item) ... ok test_single_item_nested (tests.unit.common.test_table.TestSelectionList.test_single_item_nested) ... ok test_single_item_no_df (tests.unit.common.test_table.TestSelectionList.test_single_item_no_df) ... ok test_slice (tests.unit.common.test_table.TestSelectionList.test_slice) ... ok test_slice_nested (tests.unit.common.test_table.TestSelectionList.test_slice_nested) ... ok test_slice_no_df (tests.unit.common.test_table.TestSelectionList.test_slice_no_df) ... ok test_slice_single (tests.unit.common.test_table.TestSelectionList.test_slice_single) ... ok test_slice_single_nested (tests.unit.common.test_table.TestSelectionList.test_slice_single_nested) ... ok test_slice_single_no_df (tests.unit.common.test_table.TestSelectionList.test_slice_single_no_df) ... ok test_to_dataframe (tests.unit.common.test_table.TestSelectionList.test_to_dataframe) ... ok test_to_dataframe_nested (tests.unit.common.test_table.TestSelectionList.test_to_dataframe_nested) ... ok test_init_data (tests.unit.common.test_table.TestVectorIndex.test_init_data) ... ok test_init_empty (tests.unit.common.test_table.TestVectorIndex.test_init_empty) ... ok test_array_inc_precision (tests.unit.common.test_table.TestVectorIndexDtype.test_array_inc_precision) ... ok test_array_inc_precision_1step (tests.unit.common.test_table.TestVectorIndexDtype.test_array_inc_precision_1step) ... ok test_array_inc_precision_2steps (tests.unit.common.test_table.TestVectorIndexDtype.test_array_inc_precision_2steps) ... ok test_array_prev_data_inc_precision_2steps (tests.unit.common.test_table.TestVectorIndexDtype.test_array_prev_data_inc_precision_2steps) ... ok test_list_inc_precision (tests.unit.common.test_table.TestVectorIndexDtype.test_list_inc_precision) ... ok test_list_inc_precision_1step (tests.unit.common.test_table.TestVectorIndexDtype.test_list_inc_precision_1step) ... ok test_list_inc_precision_2steps (tests.unit.common.test_table.TestVectorIndexDtype.test_list_inc_precision_2steps) ... ok test_list_prev_data_inc_precision_2steps (tests.unit.common.test_table.TestVectorIndexDtype.test_list_prev_data_inc_precision_2steps) ... ok test_both_value_and_default_value_set (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_both_value_and_default_value_set) ... ok test_build_spec (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_build_spec) ... ok test_build_spec_no_doc (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_build_spec_no_doc) ... ok test_build_spec_reftype (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_build_spec_reftype) ... ok test_build_warn_extra_args (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_build_warn_extra_args) ... ok test_colliding_shape_and_dims (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_colliding_shape_and_dims) ... ok test_constructor (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_constructor) ... ok test_default_value (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_default_value) ... ok test_dims_without_shape (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_dims_without_shape) ... ok test_invalid_dtype (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_invalid_dtype) ... ok test_shape (tests.unit.spec_tests.test_attribute_spec.AttributeSpecTests.test_shape) ... ok test_build_warn_extra_args (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_build_warn_extra_args) ... ok test_constructor (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor) ... ok test_constructor_datatype (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_datatype) ... ok test_constructor_default_value (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_default_value) ... ok test_constructor_invalid_table (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_invalid_table) ... ok test_constructor_invalidate_dtype (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_invalidate_dtype) ... ok test_constructor_ref_spec (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_ref_spec) ... ok test_constructor_shape (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_shape) ... ok test_constructor_table (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_table) ... ok test_constructor_value (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_constructor_value) ... ok test_data_type_property_value (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_data_type_property_value) Test that the property data_type has the expected value ... ok test_datatype_extension (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_datatype_extension) ... ok test_datatype_extension_groupspec (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_datatype_extension_groupspec) Test to make sure DatasetSpec catches when a GroupSpec used as data_type_inc ... ok test_datatype_table_extension (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_datatype_table_extension) ... ok test_datatype_table_extension_diff_format (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_datatype_table_extension_diff_format) ... ok test_datatype_table_extension_higher_precision (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_datatype_table_extension_higher_precision) ... ok test_datatype_table_extension_lower_precision (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_datatype_table_extension_lower_precision) ... ok test_name_with_compatible_quantity (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_name_with_compatible_quantity) ... ok test_name_with_incompatible_quantity (tests.unit.spec_tests.test_dataset_spec.DatasetSpecTests.test_name_with_incompatible_quantity) ... ok test_check_dtype_bad (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_check_dtype_bad) ... ok test_check_dtype_ok (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_check_dtype_ok) ... ok test_check_dtype_ref (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_check_dtype_ref) ... ok test_recommended_dtypes (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_recommended_dtypes) ... ok test_simplify_cpd_type (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_simplify_cpd_type) ... ok test_simplify_cpd_type_ref (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_simplify_cpd_type_ref) ... ok test_valid_primary_dtypes (tests.unit.spec_tests.test_dtype_spec.DtypeSpecHelper.test_valid_primary_dtypes) ... ok test_build_spec (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests.test_build_spec) ... ok test_constructor (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests.test_constructor) ... ok test_invalid_dtype (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests.test_invalid_dtype) ... ok test_invalid_refspec_dict (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests.test_invalid_refspec_dict) Test missing or bad target key for RefSpec. ... ok test_is_ref (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests.test_is_ref) ... ok test_refspec_dtype (tests.unit.spec_tests.test_dtype_spec.DtypeSpecTests.test_refspec_dtype) ... ok test_add_attribute (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_add_attribute) ... ok test_add_group (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_add_group) ... ok test_add_link (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_add_link) ... ok test_build_warn_extra_args (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_build_warn_extra_args) ... ok test_constructor (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_constructor) ... ok test_constructor_datatype (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_constructor_datatype) ... ok test_data_type_property_value (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_data_type_property_value) Test that the property data_type has the expected value ... ok test_get_data_type_spec (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_get_data_type_spec) ... ok test_get_namespace_spec (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_get_namespace_spec) ... ok test_path (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_path) ... ok test_path_complicated (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_path_complicated) ... ok test_path_no_name (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_path_no_name) ... ok test_set_dataset (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_set_dataset) ... ok test_set_group (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_set_group) ... ok test_set_link (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_set_link) ... ok test_set_parent_exists (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_set_parent_exists) ... ok test_type_extension (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_type_extension) ... ok test_update_attribute_spec (tests.unit.spec_tests.test_group_spec.GroupSpecTests.test_update_attribute_spec) ... ok test_constructor (tests.unit.spec_tests.test_group_spec.GroupSpecWithLinksTest.test_constructor) ... ok test_extension_no_overwrite (tests.unit.spec_tests.test_group_spec.GroupSpecWithLinksTest.test_extension_no_overwrite) ... ok test_extension_overwrite (tests.unit.spec_tests.test_group_spec.GroupSpecWithLinksTest.test_extension_overwrite) ... ok test_named_unnamed_dataset_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_named_unnamed_dataset_same_type) Test get_data_type when a group contains both a named and unnamed dataset with type X. ... ok test_named_unnamed_dataset_with_def_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_named_unnamed_dataset_with_def_same_type) Test get_data_type when a group contains both a named and unnamed dataset with type X. ... ok test_named_unnamed_group_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_named_unnamed_group_same_type) Test get_data_type when a group contains both a named and unnamed group with type X. ... ok test_named_unnamed_group_with_def_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_named_unnamed_group_with_def_same_type) Test get_data_type when a group contains both a named and unnamed group with type X. ... ok test_named_unnamed_link_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_named_unnamed_link_same_type) Test get_target_type when a group contains both a named and unnamed link with type X. ... ok test_three_named_datasets_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_three_named_datasets_same_type) Test get_target_type when a group contains three named links with type X. ... ok test_three_named_links_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_three_named_links_same_type) Test get_target_type when a group contains three named links with type X. ... ok test_two_named_datasets_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_named_datasets_same_type) Test get_data_type when a group contains multiple named datasets with type X. ... ok test_two_named_group_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_named_group_same_type) Test get_data_type when a group contains multiple named groups with type X. ... ok test_two_named_links_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_named_links_same_type) Test get_target_type when a group contains multiple named links with type X. ... ok test_two_named_unnamed_dataset_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_named_unnamed_dataset_same_type) Test get_data_type when a group contains two named and one unnamed dataset with type X. ... ok test_two_named_unnamed_link_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_named_unnamed_link_same_type) Test get_target_type when a group contains two named and one unnamed link with type X. ... ok test_two_unnamed_datasets_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_unnamed_datasets_same_type) Test creating a group contains multiple unnamed datasets with type X. ... ok test_two_unnamed_group_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_unnamed_group_same_type) Test creating a group contains multiple unnamed groups with type X. ... ok test_two_unnamed_links_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_two_unnamed_links_same_type) Test creating a group contains multiple unnamed links with type X. ... ok test_unnamed_named_dataset_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_unnamed_named_dataset_same_type) Test get_data_type when a group contains both an unnamed and named dataset with type X. ... ok test_unnamed_named_group_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_unnamed_named_group_same_type) Test get_data_type when a group contains both an unnamed and named group with type X. ... ok test_unnamed_named_link_same_type (tests.unit.spec_tests.test_group_spec.SpecWithDupsTest.test_unnamed_named_link_same_type) Test get_target_type when a group contains both an unnamed and named link with type X. ... ok test_unnamed_dataset_link_same_type (tests.unit.spec_tests.test_group_spec.SpecWithGroupsLinksTest.test_unnamed_dataset_link_same_type) ... ok test_unnamed_group_link_same_type (tests.unit.spec_tests.test_group_spec.SpecWithGroupsLinksTest.test_unnamed_group_link_same_type) ... ok test_name_with_multiple (tests.unit.spec_tests.test_group_spec.TestNotAllowedConfig.test_name_with_multiple) ... ok test_no_name_no_def_no_inc (tests.unit.spec_tests.test_group_spec.TestNotAllowedConfig.test_no_name_no_def_no_inc) ... ok test_is_inherited_attribute (tests.unit.spec_tests.test_group_spec.TestResolveAttrs.test_is_inherited_attribute) ... ok test_is_inherited_spec (tests.unit.spec_tests.test_group_spec.TestResolveAttrs.test_is_inherited_spec) ... ok test_is_overridden_attribute (tests.unit.spec_tests.test_group_spec.TestResolveAttrs.test_is_overridden_attribute) ... ok test_is_overridden_spec (tests.unit.spec_tests.test_group_spec.TestResolveAttrs.test_is_overridden_spec) ... ok test_resolved (tests.unit.spec_tests.test_group_spec.TestResolveAttrs.test_resolved) ... ok test_is_inherited_different_groups_and_datasets (tests.unit.spec_tests.test_group_spec.TestResolveGroupSameAttributeName.test_is_inherited_different_groups_and_datasets) ... ok test_is_inherited_two_different_datasets (tests.unit.spec_tests.test_group_spec.TestResolveGroupSameAttributeName.test_is_inherited_two_different_datasets) ... ok test_build_warn_extra_args (tests.unit.spec_tests.test_link_spec.LinkSpecTests.test_build_warn_extra_args) ... ok test_constructor (tests.unit.spec_tests.test_link_spec.LinkSpecTests.test_constructor) ... ok test_constructor_defaults (tests.unit.spec_tests.test_link_spec.LinkSpecTests.test_constructor_defaults) ... ok test_constructor_target_spec_def (tests.unit.spec_tests.test_link_spec.LinkSpecTests.test_constructor_target_spec_def) ... ok test_constructor_target_spec_inc (tests.unit.spec_tests.test_link_spec.LinkSpecTests.test_constructor_target_spec_inc) ... ok test_required_is_many (tests.unit.spec_tests.test_link_spec.LinkSpecTests.test_required_is_many) ... ok test_catch_dup_name (tests.unit.spec_tests.test_load_namespace.TestCatchDupNS.test_catch_dup_name) ... ok test_catch_dup_name_same_version (tests.unit.spec_tests.test_load_namespace.TestCatchDupNS.test_catch_dup_name_same_version) ... ok test_constructor_getters (tests.unit.spec_tests.test_load_namespace.TestCustomSpecClasses.test_constructor_getters) ... ok test_load_namespaces (tests.unit.spec_tests.test_load_namespace.TestCustomSpecClasses.test_load_namespaces) ... ok test_load_namespaces_bad_path (tests.unit.spec_tests.test_load_namespace.TestCustomSpecClasses.test_load_namespaces_bad_path) ... ok test_load_namespaces_ext (tests.unit.spec_tests.test_load_namespace.TestCustomSpecClasses.test_load_namespaces_ext) ... ok test_load_namespaces_twice (tests.unit.spec_tests.test_load_namespace.TestCustomSpecClasses.test_load_namespaces_twice) ... ok test_inherited_attributes (tests.unit.spec_tests.test_load_namespace.TestSpecLoad.test_inherited_attributes) ... ok test_inherited_attributes_not_resolved (tests.unit.spec_tests.test_load_namespace.TestSpecLoad.test_inherited_attributes_not_resolved) ... ok test_build_namespace_missing_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase.test_build_namespace_missing_version) Test that building/creating a SpecNamespace without a version works but raises a warning. ... ok test_get_namespace_missing_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase.test_get_namespace_missing_version) Test that SpecNamespace.version returns the constant for a missing version if version gets removed. ... ok test_load_namespace_none_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase.test_load_namespace_none_version) Test that reading a namespace file without a version works but raises a warning. ... ok test_load_namespace_unversioned_version (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase.test_load_namespace_unversioned_version) Test that reading a namespace file with version=unversioned string works but raises a warning. ... ok test_missing_version_string (tests.unit.spec_tests.test_load_namespace.TestSpecLoadEdgeCase.test_missing_version_string) Test that the constant variable representing a missing version has not changed. ... ok test_constructor (tests.unit.spec_tests.test_ref_spec.RefSpecTests.test_constructor) ... ok test_isregion (tests.unit.spec_tests.test_ref_spec.RefSpecTests.test_isregion) ... ok test_wrong_reference_type (tests.unit.spec_tests.test_ref_spec.RefSpecTests.test_wrong_reference_type) ... ok test_catch_duplicate_spec_different (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_catch_duplicate_spec_different) ... ok test_catch_duplicate_spec_different_source (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_catch_duplicate_spec_different_source) ... ok test_catch_duplicate_spec_nested (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_catch_duplicate_spec_nested) ... ok test_copy_spec_catalog (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_copy_spec_catalog) ... ok test_deepcopy_spec_catalog (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_deepcopy_spec_catalog) ... ok test_get_full_hierarchy (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_get_full_hierarchy) BaseContainer--+-->AContainer--->ADContainer ... ok test_get_spec_source_file (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_get_spec_source_file) ... ok test_hierarchy (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_hierarchy) ... ok test_register_spec (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_register_spec) ... ok test_subtypes (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_subtypes) -BaseContainer--+-->AContainer--->ADContainer ... ok test_subtypes_norecursion (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_subtypes_norecursion) -BaseContainer--+-->AContainer--->ADContainer ... ok test_subtypes_unknown_type (tests.unit.spec_tests.test_spec_catalog.SpecCatalogTest.test_subtypes_unknown_type) ... ok test_export (tests.unit.spec_tests.test_spec_write.TestExportSpec.test_export) Test that export_spec writes the correct files. ... ok test_missing_data_types (tests.unit.spec_tests.test_spec_write.TestExportSpec.test_missing_data_types) Test that calling export_spec on a namespace builder without data types raises a warning. ... ok test_export_namespace (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder.test_export_namespace) ... ok test_get_source_description (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder.test_get_source_description) ... ok test_get_source_files (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder.test_get_source_files) ... ok test_missing_version (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder.test_missing_version) Test that creating a namespace builder without a version raises an error. ... ok test_read_namespace (tests.unit.spec_tests.test_spec_write.TestNamespaceBuilder.test_read_namespace) ... ok test_get_name (tests.unit.spec_tests.test_spec_write.TestYAMLSpecWrite.test_get_name) ... ok test_init (tests.unit.spec_tests.test_spec_write.TestYAMLSpecWrite.test_init) ... ok test_write_namespace (tests.unit.spec_tests.test_spec_write.TestYAMLSpecWrite.test_write_namespace) ... ok test_bad_field_conf_key (tests.unit.test_container.TestAbstractContainerFieldsConf.test_bad_field_conf_key) ... ok test_bad_field_missing_name (tests.unit.test_container.TestAbstractContainerFieldsConf.test_bad_field_missing_name) ... ok test_bad_fields_type (tests.unit.test_container.TestAbstractContainerFieldsConf.test_bad_fields_type) ... ok test_empty_fields (tests.unit.test_container.TestAbstractContainerFieldsConf.test_empty_fields) ... ok test_inheritance (tests.unit.test_container.TestAbstractContainerFieldsConf.test_inheritance) ... ok test_inheritance_override (tests.unit.test_container.TestAbstractContainerFieldsConf.test_inheritance_override) ... ok test_mult_inheritance_base_container (tests.unit.test_container.TestAbstractContainerFieldsConf.test_mult_inheritance_base_container) ... ok test_mult_inheritance_base_mixin (tests.unit.test_container.TestAbstractContainerFieldsConf.test_mult_inheritance_base_mixin) ... ok test_named_fields (tests.unit.test_container.TestAbstractContainerFieldsConf.test_named_fields) ... ok test_not_settable (tests.unit.test_container.TestAbstractContainerFieldsConf.test_not_settable) Test that __fields__ related attributes are set correctly. ... ok test_with_doc (tests.unit.test_container.TestAbstractContainerFieldsConf.test_with_doc) Test that __fields__ related attributes are set correctly. ... ok test_fields (tests.unit.test_container.TestChangeFieldsName.test_fields) ... ok test_fields_inheritance (tests.unit.test_container.TestChangeFieldsName.test_fields_inheritance) ... ok test_add_child (tests.unit.test_container.TestContainer.test_add_child) Test that add child creates deprecation warning and also properly sets child's parent and modified ... ok test_all_children (tests.unit.test_container.TestContainer.test_all_children) ... ok test_del_read_io (tests.unit.test_container.TestContainer.test_del_read_io) ... ok test_generate_new_id_child (tests.unit.test_container.TestContainer.test_generate_new_id_child) Test that generate_new_id sets a new ID on the container and not its parent and sets modified on both. ... ok test_generate_new_id_parent (tests.unit.test_container.TestContainer.test_generate_new_id_parent) Test that generate_new_id sets a new ID on the container and its children and sets modified on all. ... ok test_generate_new_id_parent_no_recurse (tests.unit.test_container.TestContainer.test_generate_new_id_parent_no_recurse) Test that generate_new_id(recurse=False) sets a new ID on the container and not its children. ... ok test_get_ancestors (tests.unit.test_container.TestContainer.test_get_ancestors) Test that get_ancestors returns the correct ancestors. ... ok test_get_data_type (tests.unit.test_container.TestContainer.test_get_data_type) ... ok test_get_read_io_on_parent (tests.unit.test_container.TestContainer.test_get_read_io_on_parent) Test that get_read_io works when the container is set on the parent ... ok test_get_read_io_on_self (tests.unit.test_container.TestContainer.test_get_read_io_on_self) Test that get_read_io works when the container is set on the container ... ok test_init (tests.unit.test_container.TestContainer.test_init) Test that __init__ properly sets object ID and other fields. ... ok test_new (tests.unit.test_container.TestContainer.test_new) Test that __new__ properly sets parent and other fields. ... ok test_new_construct_mode (tests.unit.test_container.TestContainer.test_new_construct_mode) Test that passing in_construct_mode to __new__ sets _in_construct_mode and _in_construct_mode can be reset. ... ok test_new_object_id_none (tests.unit.test_container.TestContainer.test_new_object_id_none) Test that passing object_id=None to __new__ is OK and results in a non-None object ID being assigned. ... ok test_parent_set_link_warning (tests.unit.test_container.TestContainer.test_parent_set_link_warning) ... ok test_read_io_none (tests.unit.test_container.TestContainer.test_read_io_none) Test that __init__ properly sets read_io to None ... ok test_read_io_setter (tests.unit.test_container.TestContainer.test_read_io_setter) Test setting the read IO property ... ok test_reassign_container_source (tests.unit.test_container.TestContainer.test_reassign_container_source) Test that reassign container source throws error ... ok test_remove_child (tests.unit.test_container.TestContainer.test_remove_child) Test that removing a child removes only the child. ... ok test_remove_child_nonchild (tests.unit.test_container.TestContainer.test_remove_child_nonchild) Test that removing a non-Container child raises an error. ... ok test_remove_child_noncontainer (tests.unit.test_container.TestContainer.test_remove_child_noncontainer) Test that removing a non-Container child raises an error. ... ok test_repr (tests.unit.test_container.TestContainer.test_repr) ... ok test_reset_parent (tests.unit.test_container.TestContainer.test_reset_parent) Test that removing a child removes only the child. ... ok test_reset_parent_no_parent (tests.unit.test_container.TestContainer.test_reset_parent_no_parent) Test that resetting a non-existent parent has no effect. ... ok test_reset_parent_parent_noncontainer (tests.unit.test_container.TestContainer.test_reset_parent_parent_noncontainer) Test that resetting a parent that is not a container raises an error. ... ok test_set_modified_parent (tests.unit.test_container.TestContainer.test_set_modified_parent) Test that set modified properly sets parent modified ... ok test_set_parent (tests.unit.test_container.TestContainer.test_set_parent) Test that parent setter properly sets parent ... ok test_set_parent_exists (tests.unit.test_container.TestContainer.test_set_parent_exists) Test that setting a parent a second time does nothing ... ok test_set_parent_overwrite (tests.unit.test_container.TestContainer.test_set_parent_overwrite) Test that parent setter properly blocks overwriting ... ok test_set_parent_overwrite_proxy (tests.unit.test_container.TestContainer.test_set_parent_overwrite_proxy) Test that parent setter properly blocks overwriting with proxy/object ... ok test_slash_restriction (tests.unit.test_container.TestContainer.test_slash_restriction) ... ok test_type_hierarchy (tests.unit.test_container.TestContainer.test_type_hierarchy) ... ok test_child (tests.unit.test_container.TestContainerFieldsConf.test_child) ... ok test_required_name (tests.unit.test_container.TestContainerFieldsConf.test_required_name) ... ok test_setter_set_modified (tests.unit.test_container.TestContainerFieldsConf.test_setter_set_modified) ... ok test_bool_false (tests.unit.test_container.TestData.test_bool_false) Test that __bool__ method works correctly on empty data ... ok test_bool_true (tests.unit.test_container.TestData.test_bool_true) Test that __bool__ method works correctly on data with len ... ok test_constructor_scalar (tests.unit.test_container.TestData.test_constructor_scalar) Test that constructor works correctly on scalar data ... ok test_shape_list (tests.unit.test_container.TestData.test_shape_list) Test that shape works for np.array ... ok test_shape_nparray (tests.unit.test_container.TestData.test_shape_nparray) Test that shape works for np.array ... ok test_link_and_get_resources (tests.unit.test_container.TestHERDManager.test_link_and_get_resources) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_repr_html_ (tests.unit.test_container.TestHTMLRepr.test_repr_html_) ... ok test_dataset_shape (tests.unit.test_io_hdf5.TestHDF5Writer.test_dataset_shape) ... ok test_read_builder (tests.unit.test_io_hdf5.TestHDF5Writer.test_read_builder) ... ok test_write_attribute_reference_builder (tests.unit.test_io_hdf5.TestHDF5Writer.test_write_attribute_reference_builder) ... ok test_write_attribute_reference_container (tests.unit.test_io_hdf5.TestHDF5Writer.test_write_attribute_reference_container) ... ok test_write_builder (tests.unit.test_io_hdf5.TestHDF5Writer.test_write_builder) ... ok test_write_context_manager (tests.unit.test_io_hdf5.TestHDF5Writer.test_write_context_manager) ... ok test_dataio_bad_args (tests.unit.test_io_hdf5_h5tools.H5DataIOTests.test_dataio_bad_args) ... ok test_dataio_len (tests.unit.test_io_hdf5_h5tools.H5DataIOTests.test_dataio_len) ... ok test_dataio_maxshape (tests.unit.test_io_hdf5_h5tools.H5DataIOTests.test_dataio_maxshape) ... ok test_dataio_maxshape_from_data (tests.unit.test_io_hdf5_h5tools.H5DataIOTests.test_dataio_maxshape_from_data) ... ok test_dataio_shape_then_data (tests.unit.test_io_hdf5_h5tools.H5DataIOTests.test_dataio_shape_then_data) ... ok test_link (tests.unit.test_io_hdf5_h5tools.H5DataIOValid.test_link) Test that wrapping of linked data within H5DataIO ... ok test_read_valid (tests.unit.test_io_hdf5_h5tools.H5DataIOValid.test_read_valid) Test that h5py.H5Dataset.id.valid works as expected ... ok test_valid (tests.unit.test_io_hdf5_h5tools.H5DataIOValid.test_valid) ... ok test__chunked_iter_fill (tests.unit.test_io_hdf5_h5tools.H5IOTest.test__chunked_iter_fill) Matrix test of HDF5IO.__chunked_iter_fill__ using a DataChunkIterator with different parameters ... ok test_chunk_shape_override_through_wrapper (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_chunk_shape_override_through_wrapper) ... ok test_copy_h5py_dataset_h5dataio_input (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_copy_h5py_dataset_h5dataio_input) ... ok test_copy_h5py_dataset_input (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_copy_h5py_dataset_input) ... ok test_dci_h5dataset (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_dci_h5dataset) ... ok test_dci_h5dataset_scalar (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_dci_h5dataset_scalar) ... ok test_dci_h5dataset_sparse_matched (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_dci_h5dataset_sparse_matched) ... ok test_dci_h5dataset_sparse_unmatched (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_dci_h5dataset_sparse_unmatched) ... ok test_error_on_unsupported_compression_filter (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_error_on_unsupported_compression_filter) ... ok test_h5dataio_array_conversion_datachunkiterator (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_h5dataio_array_conversion_datachunkiterator) ... ok test_h5dataio_array_conversion_list (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_h5dataio_array_conversion_list) ... ok test_h5dataio_array_conversion_numpy (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_h5dataio_array_conversion_numpy) ... ok test_link_h5py_dataset_h5dataio_input (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_link_h5py_dataset_h5dataio_input) ... ok test_link_h5py_dataset_input (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_link_h5py_dataset_input) ... ok test_list_fill_empty (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_list_fill_empty) ... ok test_list_fill_empty_no_dtype (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_list_fill_empty_no_dtype) ... ok test_pass_through_of_chunk_shape_generic_data_chunk_iterator (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_pass_through_of_chunk_shape_generic_data_chunk_iterator) ... ok test_pass_through_of_maxshape_on_h5dataset (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_pass_through_of_maxshape_on_h5dataset) ... ok test_pass_through_of_recommended_chunks (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_pass_through_of_recommended_chunks) ... ok test_read_scalar_compound (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_read_scalar_compound) ... ok test_read_str (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_read_str) ... ok test_value_error_on_incompatible_compression_opts (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_value_error_on_incompatible_compression_opts) ... ok test_warning_on_linking_of_regular_array (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_warning_on_linking_of_regular_array) ... ok test_warning_on_non_gzip_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_warning_on_non_gzip_compression) ... ok test_warning_on_setting_io_options_on_h5dataset_input (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_warning_on_setting_io_options_on_h5dataset_input) ... ok test_write_dataset_TermSetWrapper (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_TermSetWrapper) ... skipped 'optional LinkML module is not installed' test_write_dataset_data_chunk_iterator (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_data_chunk_iterator) ... ok test_write_dataset_data_chunk_iterator_with_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_data_chunk_iterator_with_compression) ... ok test_write_dataset_generic_data_chunk_iterator (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_generic_data_chunk_iterator) ... ok test_write_dataset_generic_data_chunk_iterator_with_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_generic_data_chunk_iterator_with_compression) ... ok test_write_dataset_iterable (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_iterable) ... ok test_write_dataset_iterable_multidimensional_array (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_iterable_multidimensional_array) ... ok test_write_dataset_iterable_multidimensional_array_compression (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_iterable_multidimensional_array_compression) ... ok test_write_dataset_list (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list) ... ok test_write_dataset_list_chunked (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_chunked) ... ok test_write_dataset_list_compound_datatype (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_compound_datatype) ... ok test_write_dataset_list_compress_available_int_filters (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_compress_available_int_filters) ... ok test_write_dataset_list_compress_gzip (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_compress_gzip) ... ok test_write_dataset_list_compress_lzf (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_compress_lzf) ... ok test_write_dataset_list_compress_szip (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_compress_szip) ... ok test_write_dataset_list_disable_default_compress (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_disable_default_compress) ... ok test_write_dataset_list_enable_default_compress (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_enable_default_compress) ... ok test_write_dataset_list_fillvalue (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_list_fillvalue) ... ok test_write_dataset_lol_strings (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_lol_strings) ... ok test_write_dataset_scalar (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_scalar) ... ok test_write_dataset_scalar_compound (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_scalar_compound) ... ok test_write_dataset_string (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_dataset_string) ... ok test_write_multi_dci_conc (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_multi_dci_conc) Test writing multiple DataChunkIterators, concurrently ... ok test_write_multi_dci_oaat (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_multi_dci_oaat) Test writing multiple DataChunkIterators, one at a time ... ok test_write_table (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_table) ... ok test_write_table_nested (tests.unit.test_io_hdf5_h5tools.H5IOTest.test_write_table_nested) ... ok test_setup_empty_dset (tests.unit.test_io_hdf5_h5tools.HDF5IOClassmethodTests.test_setup_empty_dset) ... ok test_setup_empty_dset_create_exception (tests.unit.test_io_hdf5_h5tools.HDF5IOClassmethodTests.test_setup_empty_dset_create_exception) ... ok test_setup_empty_dset_req_args (tests.unit.test_io_hdf5_h5tools.HDF5IOClassmethodTests.test_setup_empty_dset_req_args) ... ok test_overwrite_dataset (tests.unit.test_io_hdf5_h5tools.HDF5IOEmptyDataset.test_overwrite_dataset) ... ok test_write_empty_dataset (tests.unit.test_io_hdf5_h5tools.HDF5IOEmptyDataset.test_write_empty_dataset) ... ok test_init_file_exists_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOInitFileExistsTest.test_init_file_exists_ok) ... ok test_init_wminus_file_exists (tests.unit.test_io_hdf5_h5tools.HDF5IOInitFileExistsTest.test_init_wminus_file_exists) ... ok test_init_x_file_exists (tests.unit.test_io_hdf5_h5tools.HDF5IOInitFileExistsTest.test_init_x_file_exists) ... ok test_init_no_file_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOInitNoFileTest.test_init_no_file_ok) ... ok test_init_no_file_r (tests.unit.test_io_hdf5_h5tools.HDF5IOInitNoFileTest.test_init_no_file_r) ... ok test_init_no_file_rplus (tests.unit.test_io_hdf5_h5tools.HDF5IOInitNoFileTest.test_init_no_file_rplus) ... ok test_copy_file_with_external_links (tests.unit.test_io_hdf5_h5tools.HDF5IOMultiFileTest.test_copy_file_with_external_links) ... ok test_read_closed (tests.unit.test_io_hdf5_h5tools.HDF5IOReadBuilderClosed.test_read_closed) ... ok test_read_file_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOReadData.test_read_file_ok) ... ok test_read_file_w (tests.unit.test_io_hdf5_h5tools.HDF5IOReadData.test_read_file_w) ... ok test_read_no_data_a (tests.unit.test_io_hdf5_h5tools.HDF5IOReadNoDataTest.test_read_no_data_a) ... ok test_read_no_data_r (tests.unit.test_io_hdf5_h5tools.HDF5IOReadNoDataTest.test_read_no_data_r) ... ok test_read_no_data_rplus (tests.unit.test_io_hdf5_h5tools.HDF5IOReadNoDataTest.test_read_no_data_rplus) ... ok test_write_a (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists.test_write_a) ... ok test_write_r (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists.test_write_r) ... ok test_write_rplus (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists.test_write_rplus) ... ok test_write_w (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteFileExists.test_write_w) ... ok test_write_no_file_a_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile.test_write_no_file_a_ok) ... ok test_write_no_file_w_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile.test_write_no_file_w_ok) ... ok test_write_no_file_wminus_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile.test_write_no_file_wminus_ok) ... ok test_write_no_file_x_ok (tests.unit.test_io_hdf5_h5tools.HDF5IOWriteNoFile.test_write_no_file_x_ok) ... ok test_external_link_to_external_link (tests.unit.test_io_hdf5_h5tools.TestBuildWriteLinkToLink.test_external_link_to_external_link) Test writing a file with external links to external links. ... ok test_external_link_to_soft_link (tests.unit.test_io_hdf5_h5tools.TestBuildWriteLinkToLink.test_external_link_to_soft_link) Test writing a file with external links to external links. ... ok test_cache_spec (tests.unit.test_io_hdf5_h5tools.TestCacheSpec.test_cache_spec) ... ok test_close_linked_files_auto (tests.unit.test_io_hdf5_h5tools.TestCloseLinks.test_close_linked_files_auto) Test closing a file with close_links=True (default). ... ok test_close_linked_files_explicit (tests.unit.test_io_hdf5_h5tools.TestCloseLinks.test_close_linked_files_explicit) Test closing a file with close_links=False and calling close_linked_files(). ... ok test_close_linked_files_not_disruptive (tests.unit.test_io_hdf5_h5tools.TestCloseLinks.test_close_linked_files_not_disruptive) Test closing a file with close_links=True (default) does not interfere with other open file handles. ... ok test_close_links_manually_and_close (tests.unit.test_io_hdf5_h5tools.TestCloseLinks.test_close_links_manually_and_close) Test closing a file with close_links=False, manually closing open links, and calling close_linked_files(). ... ok test_fail_set_data_io (tests.unit.test_io_hdf5_h5tools.TestContainerSetDataIO.test_fail_set_data_io) Attempt to set a DataIO for a dataset that is missing. ... ok test_set_data_io (tests.unit.test_io_hdf5_h5tools.TestContainerSetDataIO.test_set_data_io) ... ok test_set_data_io_h5py_dataset (tests.unit.test_io_hdf5_h5tools.TestContainerSetDataIO.test_set_data_io_h5py_dataset) ... ok test_set_data_io_old_api (tests.unit.test_io_hdf5_h5tools.TestContainerSetDataIO.test_set_data_io_old_api) Test that using the kwargs still works but throws a warning. ... ok test_roundtrip (tests.unit.test_io_hdf5_h5tools.TestCpdDatasetRefs.test_roundtrip) ... ok test_set_data_io (tests.unit.test_io_hdf5_h5tools.TestDataSetDataIO.test_set_data_io) ... ok test_set_data_io_h5py_dataset (tests.unit.test_io_hdf5_h5tools.TestDataSetDataIO.test_set_data_io_h5py_dataset) ... ok test_roundtrip (tests.unit.test_io_hdf5_h5tools.TestDatasetRefs.test_roundtrip) ... ok test_append_data (tests.unit.test_io_hdf5_h5tools.TestExport.test_append_data) Test that exporting a written container after adding groups, links, and references to it works. ... ok test_append_dataset_of_references (tests.unit.test_io_hdf5_h5tools.TestExport.test_append_dataset_of_references) Test that exporting a written container with a dataset of references works. ... ok test_append_dataset_of_references_orphaned_target (tests.unit.test_io_hdf5_h5tools.TestExport.test_append_dataset_of_references_orphaned_target) ... ok test_append_external_link_copy_data (tests.unit.test_io_hdf5_h5tools.TestExport.test_append_external_link_copy_data) Test that exporting a written container after adding a link with link_data=False copies the data. ... ok test_append_external_link_data (tests.unit.test_io_hdf5_h5tools.TestExport.test_append_external_link_data) Test that exporting a written container after adding a link with link_data=True creates external links. ... ok test_attr_reference (tests.unit.test_io_hdf5_h5tools.TestExport.test_attr_reference) Test that exporting a written file with attribute references maintains the references. ... ok test_basic (tests.unit.test_io_hdf5_h5tools.TestExport.test_basic) Test that exporting a written container works. ... ok test_basic_container (tests.unit.test_io_hdf5_h5tools.TestExport.test_basic_container) Test that exporting a written container, passing in the container arg, works. ... ok test_cache_spec_false (tests.unit.test_io_hdf5_h5tools.TestExport.test_cache_spec_false) Test that exporting with cache_spec works. ... ok test_cache_spec_true (tests.unit.test_io_hdf5_h5tools.TestExport.test_cache_spec_true) Test that exporting with cache_spec works. ... ok test_container_part (tests.unit.test_io_hdf5_h5tools.TestExport.test_container_part) Test that exporting a part of a written container raises an error. ... ok test_container_unknown (tests.unit.test_io_hdf5_h5tools.TestExport.test_container_unknown) Test that exporting a container that did not come from the src_io object raises an error. ... ok test_export_cpd_dset_refs (tests.unit.test_io_hdf5_h5tools.TestExport.test_export_cpd_dset_refs) Test that exporting a written container with a compound dataset with references works. ... ok test_export_dset_refs (tests.unit.test_io_hdf5_h5tools.TestExport.test_export_dset_refs) Test that exporting a written container with a dataset of references works. ... ok test_export_io (tests.unit.test_io_hdf5_h5tools.TestExport.test_export_io) Test that exporting a written container using HDF5IO.export_io works. ... ok test_export_simple_link_data (tests.unit.test_io_hdf5_h5tools.TestExport.test_export_simple_link_data) Test simple exporting of data with a link with link_data=True links the data. ... ok test_export_simple_link_data_false (tests.unit.test_io_hdf5_h5tools.TestExport.test_export_simple_link_data_false) Test simple exporting of data with a link with link_data=False copies the data. ... ok test_export_simple_with_container_link_data_false (tests.unit.test_io_hdf5_h5tools.TestExport.test_export_simple_with_container_link_data_false) Test simple exporting of data with a link with link_data=False copies the data. ... ok test_external_link_dataset (tests.unit.test_io_hdf5_h5tools.TestExport.test_external_link_dataset) Test that exporting a written file with external linked datasets maintains the links. ... ok test_external_link_group (tests.unit.test_io_hdf5_h5tools.TestExport.test_external_link_group) Test that exporting a written file with external linked groups maintains the links. ... ok test_external_link_group_rel_path (tests.unit.test_io_hdf5_h5tools.TestExport.test_external_link_group_rel_path) Test that exporting a written file from a relative filepath works. ... ok test_external_link_link (tests.unit.test_io_hdf5_h5tools.TestExport.test_external_link_link) Test that exporting a written file with external links to external links maintains the links. ... ok test_new_soft_link (tests.unit.test_io_hdf5_h5tools.TestExport.test_new_soft_link) Test that exporting a file with a newly created soft link makes the link internally. ... ok test_non_HDF5_src_link_data_true (tests.unit.test_io_hdf5_h5tools.TestExport.test_non_HDF5_src_link_data_true) Test that exporting with a src_io without a manager raises an error. ... ok test_non_manager_container (tests.unit.test_io_hdf5_h5tools.TestExport.test_non_manager_container) Test that exporting with a src_io without a manager raises an error. ... ok test_pop_data (tests.unit.test_io_hdf5_h5tools.TestExport.test_pop_data) Test that exporting a written container after removing an element from it works. ... ok test_pop_linked_group (tests.unit.test_io_hdf5_h5tools.TestExport.test_pop_linked_group) Test that exporting a written container after removing a linked element from it works. ... ok test_soft_link_dataset (tests.unit.test_io_hdf5_h5tools.TestExport.test_soft_link_dataset) Test that exporting a written file with soft linked datasets keeps links within the file. ... ok test_soft_link_group (tests.unit.test_io_hdf5_h5tools.TestExport.test_soft_link_group) Test that exporting a written file with soft linked groups keeps links within the file. ... ok test_soft_link_group_modified (tests.unit.test_io_hdf5_h5tools.TestExport.test_soft_link_group_modified) Test that exporting a written file with soft linked groups keeps links within the file. ... ok test_soft_link_group_modified_rel_path (tests.unit.test_io_hdf5_h5tools.TestExport.test_soft_link_group_modified_rel_path) Test that exporting a written file with soft linked groups keeps links within the file. ... ok test_with_new_id (tests.unit.test_io_hdf5_h5tools.TestExport.test_with_new_id) Test that exporting with a src_io without a manager raises an error. ... ok test_wrong_mode (tests.unit.test_io_hdf5_h5tools.TestExport.test_wrong_mode) Test that exporting with a src_io without a manager raises an error. ... ok test_get_namespaces_different_versions (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_different_versions) Test getting namespaces with multiple versions given a path. ... ok test_get_namespaces_multiple_namespaces (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_multiple_namespaces) Test getting multiple namespaces given a path. ... ok test_get_namespaces_no_specloc (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_no_specloc) Test getting namespaces where the file does not contain a SPEC_LOC_ATTR. ... ok test_get_namespaces_none_and_other_version (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_none_and_other_version) Test getting namespaces file has a namespace with a normal version and an 'None" version. ... ok test_get_namespaces_none_version (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_none_version) Test getting namespaces where file has one None-versioned namespace. ... ok test_get_namespaces_unversioned (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_unversioned) Test getting namespaces where file has one unversioned namespace. ... ok test_get_namespaces_unversioned_and_other (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_unversioned_and_other) Test getting namespaces file has a namespace with a normal version and an 'unversioned" version. ... ok test_get_namespaces_with_file (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_with_file) Test getting namespaces given a file object. ... ok test_get_namespaces_with_path (tests.unit.test_io_hdf5_h5tools.TestGetNamespaces.test_get_namespaces_with_path) Test getting namespaces given a path. ... ok test_constructor (tests.unit.test_io_hdf5_h5tools.TestHDF5IO.test_constructor) ... ok test_delete_with_incomplete_construction_missing_file (tests.unit.test_io_hdf5_h5tools.TestHDF5IO.test_delete_with_incomplete_construction_missing_file) Here we test what happens when `close` is called before `HDF5IO.__init__` has ... ok test_delete_with_incomplete_construction_missing_open_files (tests.unit.test_io_hdf5_h5tools.TestHDF5IO.test_delete_with_incomplete_construction_missing_open_files) Here we test what happens when `close` is called before `HDF5IO.__init__` has ... ok test_path_or_file (tests.unit.test_io_hdf5_h5tools.TestHDF5IO.test_path_or_file) ... ok test_pathlib_path (tests.unit.test_io_hdf5_h5tools.TestHDF5IO.test_pathlib_path) ... ok test_set_file_mismatch (tests.unit.test_io_hdf5_h5tools.TestHDF5IO.test_set_file_mismatch) ... ok test_io_read_herd (tests.unit.test_io_hdf5_h5tools.TestHERDIO.test_io_read_herd) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_io_read_herd_file_warn (tests.unit.test_io_hdf5_h5tools.TestHERDIO.test_io_read_herd_file_warn) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_io_read_herd_value_warn (tests.unit.test_io_hdf5_h5tools.TestHERDIO.test_io_read_herd_value_warn) ... /build/reproducible-path/hdmf-3.14.5/.pybuild/cpython3_3.12_hdmf/build/hdmf/container.py:290: UserWarning: HERD is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) ok test_io_write_extend_herd (tests.unit.test_io_hdf5_h5tools.TestHERDIO.test_io_write_extend_herd) Test the optional write of HERD with extending an existing HERD instance. ... skipped 'optional LinkML module is not installed' test_link_data_false (tests.unit.test_io_hdf5_h5tools.TestLinkData.test_link_data_false) Test that the argument link_data=False for write_builder copies the data. ... ok test_link_data_true (tests.unit.test_io_hdf5_h5tools.TestLinkData.test_link_data_true) Test that the argument link_data=True for write_builder creates an external link. ... ok test_load_namespaces_file_no_path (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_file_no_path) Test that loading namespaces from an h5py.File not backed by a file on disk is OK and does not close the file. ... ok test_load_namespaces_file_path_matched (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_file_path_matched) Test that loading namespaces given an h5py.File and path is OK and does not close the file. ... ok test_load_namespaces_file_path_mismatched (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_file_path_mismatched) Test that loading namespaces given an h5py.File and path that are mismatched raises an error. ... ok test_load_namespaces_no_path_no_file (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_no_path_no_file) Test that loading namespaces without a path or file raises an error. ... ok test_load_namespaces_no_specloc (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_no_specloc) Test loading namespaces where the file does not contain a SPEC_LOC_ATTR. ... ok test_load_namespaces_none_version (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_none_version) Test that reading a file with a cached namespace and None version works but raises a warning. ... ok test_load_namespaces_path (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_path) Test that loading namespaces given a path is OK and returns the correct dictionary. ... ok test_load_namespaces_resolve_custom_deps (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_resolve_custom_deps) Test that reading a file with a cached namespace and different def/inc keys works. ... ok test_load_namespaces_unversioned (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_unversioned) Test that reading a file with a cached, unversioned version works but raises a warning. ... ok test_load_namespaces_with_dependencies (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_with_dependencies) Test loading namespaces where one includes another. ... ok test_load_namespaces_with_pathlib_path (tests.unit.test_io_hdf5_h5tools.TestLoadNamespaces.test_load_namespaces_with_pathlib_path) Test that loading a namespace using a valid pathlib Path is OK and returns the correct dictionary. ... ok test_double_append_new_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_double_append_new_manager) Test writing to a container in append mode twice using a new manager without changing the container. ... skipped 'Functionality not yet supported' test_double_append_same_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_double_append_same_manager) Test writing to a container in append mode twice using the same manager without changing the container. ... skipped 'Functionality not yet supported' test_double_write_new_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_double_write_new_manager) Test writing to a container in write mode twice using a new manager without changing the container. ... ok test_double_write_same_manager (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_double_write_same_manager) Test writing to a container in write mode twice using the same manager without changing the container. ... ok test_write_add_append_bucket (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_write_add_append_bucket) Test appending a container to a file. ... ok test_write_add_append_double_write (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_write_add_append_double_write) Test using the same IO object to append a container to a file twice. ... ok test_write_add_write (tests.unit.test_io_hdf5_h5tools.TestMultiWrite.test_write_add_write) Test writing a container, adding to the in-memory container, then overwriting the same file. ... ok test_no_cache_spec (tests.unit.test_io_hdf5_h5tools.TestNoCacheSpec.test_no_cache_spec) ... ok test_broken_link (tests.unit.test_io_hdf5_h5tools.TestReadLink.test_broken_link) Test that opening a file with a broken link raises a warning but is still readable. ... ok test_broken_linked_data (tests.unit.test_io_hdf5_h5tools.TestReadLink.test_broken_linked_data) Test that opening a file with a broken link raises a warning but is still readable. ... ok test_link_to_link (tests.unit.test_io_hdf5_h5tools.TestReadLink.test_link_to_link) Test that link to link gets written and read properly ... ok test_set_link_loc (tests.unit.test_io_hdf5_h5tools.TestReadLink.test_set_link_loc) Test that Builder location is set when it is read as a link ... ok test_roundtrip_TermSetWrapper_attribute (tests.unit.test_io_hdf5_h5tools.TestRoundTrip.test_roundtrip_TermSetWrapper_attribute) ... skipped 'optional LinkML module is not installed' test_roundtrip_TermSetWrapper_dataset (tests.unit.test_io_hdf5_h5tools.TestRoundTrip.test_roundtrip_TermSetWrapper_dataset) ... skipped 'optional LinkML module is not installed' test_roundtrip_basic (tests.unit.test_io_hdf5_h5tools.TestRoundTrip.test_roundtrip_basic) ... ok test_roundtrip_empty_dataset (tests.unit.test_io_hdf5_h5tools.TestRoundTrip.test_roundtrip_empty_dataset) ... ok test_roundtrip_empty_group (tests.unit.test_io_hdf5_h5tools.TestRoundTrip.test_roundtrip_empty_group) ... ok test_roundtrip_pathlib_path (tests.unit.test_io_hdf5_h5tools.TestRoundTrip.test_roundtrip_pathlib_path) ... ok test_roundtrip_basic (tests.unit.test_io_hdf5_h5tools.TestWriteHDF5withZarrInput.test_roundtrip_basic) ... skipped 'Skipping TestRoundTripHDF5withZarrInput because Zarr is not installed' test_roundtrip_empty_dataset (tests.unit.test_io_hdf5_h5tools.TestWriteHDF5withZarrInput.test_roundtrip_empty_dataset) ... skipped 'Skipping TestRoundTripHDF5withZarrInput because Zarr is not installed' test_write_zarr_dataset_compress_gzip (tests.unit.test_io_hdf5_h5tools.TestWriteHDF5withZarrInput.test_write_zarr_dataset_compress_gzip) ... skipped 'Skipping TestRoundTripHDF5withZarrInput because Zarr is not installed' test_write_zarr_float32_dataset (tests.unit.test_io_hdf5_h5tools.TestWriteHDF5withZarrInput.test_write_zarr_float32_dataset) ... skipped 'Skipping TestRoundTripHDF5withZarrInput because Zarr is not installed' test_write_zarr_int32_dataset (tests.unit.test_io_hdf5_h5tools.TestWriteHDF5withZarrInput.test_write_zarr_int32_dataset) ... skipped 'Skipping TestRoundTripHDF5withZarrInput because Zarr is not installed' test_write_zarr_string_dataset (tests.unit.test_io_hdf5_h5tools.TestWriteHDF5withZarrInput.test_write_zarr_string_dataset) ... skipped 'Skipping TestRoundTripHDF5withZarrInput because Zarr is not installed' test_set_written_on_write (tests.unit.test_io_hdf5_h5tools.TestWritten.test_set_written_on_write) Test that write_builder changes the written flag of the builder and its children from False to True. ... ok test_basic_read (tests.unit.test_io_hdf5_streaming.TestRos3.test_basic_read) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_basic_read_s3_with_aws_region (tests.unit.test_io_hdf5_streaming.TestRos3.test_basic_read_s3_with_aws_region) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_basic_read_with_aws_region (tests.unit.test_io_hdf5_streaming.TestRos3.test_basic_read_with_aws_region) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_get_namespaces (tests.unit.test_io_hdf5_streaming.TestRos3.test_get_namespaces) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_get_namespaces_s3_with_aws_region (tests.unit.test_io_hdf5_streaming.TestRos3.test_get_namespaces_s3_with_aws_region) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_get_namespaces_with_aws_region (tests.unit.test_io_hdf5_streaming.TestRos3.test_get_namespaces_with_aws_region) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_load_namespaces (tests.unit.test_io_hdf5_streaming.TestRos3.test_load_namespaces) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_load_namespaces_s3_with_aws_region (tests.unit.test_io_hdf5_streaming.TestRos3.test_load_namespaces_s3_with_aws_region) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_load_namespaces_with_aws_region (tests.unit.test_io_hdf5_streaming.TestRos3.test_load_namespaces_with_aws_region) ... skipped 'Internet access to DANDI failed. Skipping all Ros3 streaming tests.' test_create_multiple_types (tests.unit.test_multicontainerinterface.TestBadClsConf.test_create_multiple_types) Test that an error is raised if __clsconf__ specifies 'create' key with multiple types. ... ok test_create_multiple_types_multi (tests.unit.test_multicontainerinterface.TestBadClsConf.test_create_multiple_types_multi) Test that an error is raised if one item of a __clsconf__ list specifies 'create' key with multiple types. ... ok test_missing_add (tests.unit.test_multicontainerinterface.TestBadClsConf.test_missing_add) Test that an error is raised if __clsconf__ is missing the add key. ... ok test_missing_add_multi (tests.unit.test_multicontainerinterface.TestBadClsConf.test_missing_add_multi) Test that an error is raised if one item of a __clsconf__ list is missing the add key. ... ok test_missing_attr (tests.unit.test_multicontainerinterface.TestBadClsConf.test_missing_attr) Test that an error is raised if __clsconf__ is missing the attr key. ... ok test_missing_attr_multi (tests.unit.test_multicontainerinterface.TestBadClsConf.test_missing_attr_multi) Test that an error is raised if one item of a __clsconf__ list is missing the attr key. ... ok test_missing_type (tests.unit.test_multicontainerinterface.TestBadClsConf.test_missing_type) Test that an error is raised if __clsconf__ is missing the type key. ... ok test_missing_type_multi (tests.unit.test_multicontainerinterface.TestBadClsConf.test_missing_type_multi) Test that an error is raised if one item of a __clsconf__ list is missing the type key. ... ok test_wrong_type (tests.unit.test_multicontainerinterface.TestBadClsConf.test_wrong_type) Test that an error is raised if __clsconf__ is missing the add key. ... ok test_add_dict (tests.unit.test_multicontainerinterface.TestBasic.test_add_dict) Test that adding a dict to the attribute dict correctly adds the input dict values. ... ok test_add_docval (tests.unit.test_multicontainerinterface.TestBasic.test_add_docval) Test that the docval for the add method is set correctly. ... ok test_add_list (tests.unit.test_multicontainerinterface.TestBasic.test_add_list) Test that adding a list to the attribute dict correctly adds the items. ... ok test_add_single (tests.unit.test_multicontainerinterface.TestBasic.test_add_single) Test that adding a container to the attribute dict correctly adds the container. ... ok test_add_single_dup (tests.unit.test_multicontainerinterface.TestBasic.test_add_single_dup) Test that adding a container to the attribute dict correctly adds the container. ... ok test_add_single_modified (tests.unit.test_multicontainerinterface.TestBasic.test_add_single_modified) Test that adding a container to the attribute dict correctly makes the MCI as modified. ... ok test_add_single_not_parent (tests.unit.test_multicontainerinterface.TestBasic.test_add_single_not_parent) Test that adding a container with a parent to the attribute dict correctly adds the container. ... ok test_add_single_not_parent_modified (tests.unit.test_multicontainerinterface.TestBasic.test_add_single_not_parent_modified) Test that adding a container with a parent to the attribute dict correctly marks the MCI as modified. ... ok test_attr_getter (tests.unit.test_multicontainerinterface.TestBasic.test_attr_getter) Test that the getter for the attribute dict returns a LabelledDict. ... ok test_attr_property (tests.unit.test_multicontainerinterface.TestBasic.test_attr_property) Test that a property is created for the attribute. ... ok test_attr_setter_none (tests.unit.test_multicontainerinterface.TestBasic.test_attr_setter_none) Test that setting the attribute dict to None does not alter the dict. ... ok test_create_docval (tests.unit.test_multicontainerinterface.TestBasic.test_create_docval) Test that the docval for the create method is set correctly. ... ok test_getitem (tests.unit.test_multicontainerinterface.TestBasic.test_getitem) Test that getitem works. ... ok test_getitem_docval (tests.unit.test_multicontainerinterface.TestBasic.test_getitem_docval) Test that the docval for __getitem__ is set correctly. ... ok test_getitem_empty (tests.unit.test_multicontainerinterface.TestBasic.test_getitem_empty) Test that an error is raised if the attribute dict is empty and no name is given to getitem. ... ok test_getitem_multiconf (tests.unit.test_multicontainerinterface.TestBasic.test_getitem_multiconf) Test that classes with multiple attribute configurations cannot use getitem. ... ok test_getitem_multiple (tests.unit.test_multicontainerinterface.TestBasic.test_getitem_multiple) Test that an error is raised if the attribute dict has multiple values and no name is given to getitem. ... ok test_getitem_not_found (tests.unit.test_multicontainerinterface.TestBasic.test_getitem_not_found) Test that a KeyError is raised if the key is not found using getitem. ... ok test_getitem_single_none (tests.unit.test_multicontainerinterface.TestBasic.test_getitem_single_none) Test that getitem works wwhen there is a single item and no name is given to getitem. ... ok test_getter_docval (tests.unit.test_multicontainerinterface.TestBasic.test_getter_docval) Test that the docval for the get method is set correctly. ... ok test_getter_empty (tests.unit.test_multicontainerinterface.TestBasic.test_getter_empty) Test that calling the getter with no args and no items in the attribute dict raises an error. ... ok test_getter_name (tests.unit.test_multicontainerinterface.TestBasic.test_getter_name) Test that calling the getter with a correct key works. ... ok test_getter_name_not_found (tests.unit.test_multicontainerinterface.TestBasic.test_getter_name_not_found) Test that calling the getter with a key not in the attribute dict raises a KeyError. ... ok test_getter_none (tests.unit.test_multicontainerinterface.TestBasic.test_getter_none) Test that calling the getter with no args and one item in the attribute returns the item. ... ok test_getter_none_multiple (tests.unit.test_multicontainerinterface.TestBasic.test_getter_none_multiple) Test that calling the getter with no args and multiple items in the attribute dict raises an error. ... ok test_init_custom_name (tests.unit.test_multicontainerinterface.TestBasic.test_init_custom_name) Test that initializing the MCI with a custom name works. ... ok test_init_docval (tests.unit.test_multicontainerinterface.TestBasic.test_init_docval) Test that the docval for the __init__ method is set correctly. ... ok test_init_empty (tests.unit.test_multicontainerinterface.TestBasic.test_init_empty) Test that initializing the MCI with no arguments initializes the attribute dict empty. ... ok test_init_multi (tests.unit.test_multicontainerinterface.TestBasic.test_init_multi) Test that initializing the MCI with no arguments initializes the attribute dict empty. ... ok test_remove_child (tests.unit.test_multicontainerinterface.TestBasic.test_remove_child) Test that removing a child container from the attribute dict resets the parent to None. ... ok test_remove_non_child (tests.unit.test_multicontainerinterface.TestBasic.test_remove_non_child) Test that removing a non-child container from the attribute dict resets the parent to None. ... ok test_repr_html_ (tests.unit.test_multicontainerinterface.TestBasic.test_repr_html_) ... ok test_init_no_cls_conf (tests.unit.test_multicontainerinterface.TestNoClsConf.test_init_no_cls_conf) Test that defining an MCI subclass without __clsconf__ raises an error. ... ok test_init_superclass_no_cls_conf (tests.unit.test_multicontainerinterface.TestNoClsConf.test_init_superclass_no_cls_conf) Test that a subclass of an MCI class without a __clsconf__ can be initialized. ... ok test_mci_init (tests.unit.test_multicontainerinterface.TestNoClsConf.test_mci_init) Test that MultiContainerInterface cannot be instantiated. ... ok test_override_init (tests.unit.test_multicontainerinterface.TestOverrideInit.test_override_init) Test that overriding __init__ works. ... ok test_override_property (tests.unit.test_multicontainerinterface.TestOverrideInit.test_override_property) Test that overriding the attribute property works. ... ok test___eq__ (tests.unit.test_query.LinspaceQueryTest.test___eq__) Test wrapper equals magic method ... ok test___ge__ (tests.unit.test_query.LinspaceQueryTest.test___ge__) Test wrapper greater than or equal magic method ... ok test___getitem__ (tests.unit.test_query.LinspaceQueryTest.test___getitem__) Test wrapper getitem using slice ... ok test___getitem__query (tests.unit.test_query.LinspaceQueryTest.test___getitem__query) Test wrapper getitem using query ... ok test___gt__ (tests.unit.test_query.LinspaceQueryTest.test___gt__) Test wrapper greater than magic method ... ok test___le__ (tests.unit.test_query.LinspaceQueryTest.test___le__) Test wrapper less than or equal magic method ... ok test___lt__ (tests.unit.test_query.LinspaceQueryTest.test___lt__) Test wrapper less than magic method ... ok test___ne__ (tests.unit.test_query.LinspaceQueryTest.test___ne__) Test wrapper not equal magic method ... ok test_get_dataset (tests.unit.test_query.LinspaceQueryTest.test_get_dataset) ... ok test___eq__ (tests.unit.test_query.SortedQueryTest.test___eq__) Test wrapper equals magic method ... ok test___ge__ (tests.unit.test_query.SortedQueryTest.test___ge__) Test wrapper greater than or equal magic method ... ok test___getitem__ (tests.unit.test_query.SortedQueryTest.test___getitem__) Test wrapper getitem using slice ... ok test___getitem__query (tests.unit.test_query.SortedQueryTest.test___getitem__query) Test wrapper getitem using query ... ok test___gt__ (tests.unit.test_query.SortedQueryTest.test___gt__) Test wrapper greater than magic method ... ok test___le__ (tests.unit.test_query.SortedQueryTest.test___le__) Test wrapper less than or equal magic method ... ok test___lt__ (tests.unit.test_query.SortedQueryTest.test___lt__) Test wrapper less than magic method ... ok test___ne__ (tests.unit.test_query.SortedQueryTest.test___ne__) Test wrapper not equal magic method ... ok test_get_dataset (tests.unit.test_query.SortedQueryTest.test_get_dataset) ... ok test___str__ (tests.unit.test_table.TestRow.test___str__) ... ok test_add_row_getitem (tests.unit.test_table.TestRow.test_add_row_getitem) ... ok test_init (tests.unit.test_table.TestRow.test_init) ... ok test_row_no_table (tests.unit.test_table.TestRow.test_row_no_table) ... ok test_table_init (tests.unit.test_table.TestRow.test_table_init) ... ok test_todict (tests.unit.test_table.TestRow.test_todict) ... ok test_add_row_getitem (tests.unit.test_table.TestTable.test_add_row_getitem) ... ok test_from_dataframe (tests.unit.test_table.TestTable.test_from_dataframe) ... ok test_init (tests.unit.test_table.TestTable.test_init) ... ok test_to_dataframe (tests.unit.test_table.TestTable.test_to_dataframe) ... ok test_already_wrapped_warn (tests.unit.test_term_set.TestGlobalTypeConfig.test_already_wrapped_warn) ... skipped 'optional LinkML module is not installed' test_container_type_warn (tests.unit.test_term_set.TestGlobalTypeConfig.test_container_type_warn) ... skipped 'optional LinkML module is not installed' test_field_not_in_config (tests.unit.test_term_set.TestGlobalTypeConfig.test_field_not_in_config) ... skipped 'optional LinkML module is not installed' test_load_config (tests.unit.test_term_set.TestGlobalTypeConfig.test_load_config) ... skipped 'optional LinkML module is not installed' test_namespace_warn (tests.unit.test_term_set.TestGlobalTypeConfig.test_namespace_warn) ... skipped 'optional LinkML module is not installed' test_spec_none (tests.unit.test_term_set.TestGlobalTypeConfig.test_spec_none) ... skipped 'optional LinkML module is not installed' test_validate_with_config (tests.unit.test_term_set.TestGlobalTypeConfig.test_validate_with_config) ... skipped 'optional LinkML module is not installed' test_enum_expander (tests.unit.test_term_set.TestTermSet.test_enum_expander) ... skipped 'optional LinkML module is not installed' test_enum_expander_output (tests.unit.test_term_set.TestTermSet.test_enum_expander_output) ... skipped 'optional LinkML module is not installed' test_folder_output (tests.unit.test_term_set.TestTermSet.test_folder_output) ... skipped 'optional LinkML module is not installed' test_get_item (tests.unit.test_term_set.TestTermSet.test_get_item) ... skipped 'optional LinkML module is not installed' test_get_item_key_error (tests.unit.test_term_set.TestTermSet.test_get_item_key_error) ... skipped 'optional LinkML module is not installed' test_repr_html_long (tests.unit.test_term_set.TestTermSet.test_repr_html_long) ... skipped 'optional LinkML module is not installed' test_repr_html_short (tests.unit.test_term_set.TestTermSet.test_repr_html_short) ... skipped 'optional LinkML module is not installed' test_repr_long (tests.unit.test_term_set.TestTermSet.test_repr_long) ... skipped 'optional LinkML module is not installed' test_repr_short (tests.unit.test_term_set.TestTermSet.test_repr_short) ... skipped 'optional LinkML module is not installed' test_schema_sheets_and_path_provided_error (tests.unit.test_term_set.TestTermSet.test_schema_sheets_and_path_provided_error) ... skipped 'optional LinkML module is not installed' test_termset_setup (tests.unit.test_term_set.TestTermSet.test_termset_setup) ... skipped 'optional LinkML module is not installed' test_termset_validate (tests.unit.test_term_set.TestTermSet.test_termset_validate) ... skipped 'optional LinkML module is not installed' test_termset_validate_false (tests.unit.test_term_set.TestTermSet.test_termset_validate_false) ... skipped 'optional LinkML module is not installed' test_view_set (tests.unit.test_term_set.TestTermSet.test_view_set) ... skipped 'optional LinkML module is not installed' test_view_set_sheets (tests.unit.test_term_set.TestTermSet.test_view_set_sheets) ... skipped 'optional LinkML module is not installed' test_get_item (tests.unit.test_term_set.TestTermSetWrapper.test_get_item) ... skipped 'optional LinkML module is not installed' test_properties (tests.unit.test_term_set.TestTermSetWrapper.test_properties) ... skipped 'optional LinkML module is not installed' test_validate_error (tests.unit.test_term_set.TestTermSetWrapper.test_validate_error) ... skipped 'optional LinkML module is not installed' test_wrapper_append (tests.unit.test_term_set.TestTermSetWrapper.test_wrapper_append) ... skipped 'optional LinkML module is not installed' test_wrapper_append_error (tests.unit.test_term_set.TestTermSetWrapper.test_wrapper_append_error) ... skipped 'optional LinkML module is not installed' test_wrapper_extend (tests.unit.test_term_set.TestTermSetWrapper.test_wrapper_extend) ... skipped 'optional LinkML module is not installed' test_wrapper_extend_error (tests.unit.test_term_set.TestTermSetWrapper.test_wrapper_extend_error) ... skipped 'optional LinkML module is not installed' test_wrapper_validate_attribute (tests.unit.test_term_set.TestTermSetWrapper.test_wrapper_validate_attribute) ... skipped 'optional LinkML module is not installed' test_wrapper_validate_dataset (tests.unit.test_term_set.TestTermSetWrapper.test_wrapper_validate_dataset) ... skipped 'optional LinkML module is not installed' test_already_loaded_path_error (tests.unit.test_term_set.TestTypeConfig.test_already_loaded_path_error) ... skipped 'optional LinkML module is not installed' test_config_path (tests.unit.test_term_set.TestTypeConfig.test_config_path) ... skipped 'optional LinkML module is not installed' test_get_config (tests.unit.test_term_set.TestTypeConfig.test_get_config) ... skipped 'optional LinkML module is not installed' test_get_config_container_error (tests.unit.test_term_set.TestTypeConfig.test_get_config_container_error) ... skipped 'optional LinkML module is not installed' test_get_config_namespace_error (tests.unit.test_term_set.TestTypeConfig.test_get_config_namespace_error) ... skipped 'optional LinkML module is not installed' test_get_loaded_type_config_error (tests.unit.test_term_set.TestTypeConfig.test_get_loaded_type_config_error) ... skipped 'optional LinkML module is not installed' test_load_two_unique_configs (tests.unit.test_term_set.TestTypeConfig.test_load_two_unique_configs) ... skipped 'optional LinkML module is not installed' test_datachunk_astype (tests.unit.utils_test.test_core_DataChunk.DataChunkTests.test_datachunk_astype) ... ok test_datachunk_copy (tests.unit.utils_test.test_core_DataChunk.DataChunkTests.test_datachunk_copy) ... ok test_datachunk_deepcopy (tests.unit.utils_test.test_core_DataChunk.DataChunkTests.test_datachunk_deepcopy) ... ok test_custom_iter_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_custom_iter_first_axis) ... ok test_custom_iter_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_custom_iter_last_axis) ... ok test_custom_iter_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_custom_iter_middle_axis) ... ok test_custom_iter_mismatched_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_custom_iter_mismatched_axis) ... ok test_dtype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_dtype) ... ok test_list_none (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_list_none) Test that DataChunkIterator has no dtype or chunks when given a list of None. ... ok test_list_none_dtype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_list_none_dtype) Test that DataChunkIterator has the passed-in dtype and no chunks when given a list of None. ... ok test_list_numpy_scalar (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_list_numpy_scalar) ... ok test_list_scalar (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_list_scalar) ... ok test_maxshape (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_maxshape) ... ok test_multidimensional_list_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_multidimensional_list_first_axis) Test DataChunkIterator with multidimensional list data, no buffering, and iterating on the first dimension. ... ok test_multidimensional_list_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_multidimensional_list_last_axis) Test DataChunkIterator with multidimensional list data, no buffering, and iterating on the last dimension. ... ok test_multidimensional_list_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_multidimensional_list_middle_axis) Test DataChunkIterator with multidimensional list data, no buffering, and iterating on a middle dimension. ... ok test_none_iter (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_none_iter) Test that DataChunkIterator __init__ sets defaults correctly and all chunks and recommended shapes are None. ... ok test_numpy_iter_buffered_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_buffered_first_axis) Test DataChunkIterator with numpy data, buffering, and iterating on the first dimension. ... ok test_numpy_iter_buffered_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_buffered_last_axis) Test DataChunkIterator with numpy data, buffering, and iterating on the last dimension. ... ok test_numpy_iter_buffered_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_buffered_middle_axis) Test DataChunkIterator with numpy data, buffering, and iterating on a middle dimension. ... ok test_numpy_iter_unbuffered_first_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_unbuffered_first_axis) Test DataChunkIterator with numpy data, no buffering, and iterating on the first dimension. ... ok test_numpy_iter_unbuffered_last_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_unbuffered_last_axis) Test DataChunkIterator with numpy data, no buffering, and iterating on the last dimension. ... ok test_numpy_iter_unbuffered_middle_axis (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_unbuffered_middle_axis) Test DataChunkIterator with numpy data, no buffering, and iterating on a middle dimension. ... ok test_numpy_iter_unmatched_buffer_size (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_numpy_iter_unmatched_buffer_size) ... ok test_set_maxshape (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_set_maxshape) ... ok test_sparse_data_buffer_aligned (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_sparse_data_buffer_aligned) ... ok test_sparse_data_buffer_notaligned (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_sparse_data_buffer_notaligned) ... ok test_standard_iterator_unbuffered (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_standard_iterator_unbuffered) ... ok test_standard_iterator_unmatched_buffersized (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_standard_iterator_unmatched_buffersized) ... ok test_start_with_none (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkIteratorTests.test_start_with_none) ... ok test_astype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests.test_astype) ... ok test_dtype (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests.test_dtype) ... ok test_len_operator_no_data (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests.test_len_operator_no_data) ... ok test_len_operator_with_data (tests.unit.utils_test.test_core_DataChunkIterator.DataChunkTests.test_len_operator_with_data) ... ok test_copy (tests.unit.utils_test.test_core_DataIO.DataIOTests.test_copy) ... ok test_dataio_options (tests.unit.utils_test.test_core_DataIO.DataIOTests.test_dataio_options) Test that either data or dtype+shape are specified exclusively ... ok test_dataio_slice_delegation (tests.unit.utils_test.test_core_DataIO.DataIOTests.test_dataio_slice_delegation) ... ok test_deepcopy (tests.unit.utils_test.test_core_DataIO.DataIOTests.test_deepcopy) ... ok test_set_dataio (tests.unit.utils_test.test_core_DataIO.DataIOTests.test_set_dataio) Test that Data.set_dataio works as intended ... ok test_set_dataio_data_already_set (tests.unit.utils_test.test_core_DataIO.DataIOTests.test_set_dataio_data_already_set) Test that Data.set_dataio works as intended ... ok test_abstract_assertions (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_abstract_assertions) ... ok test_automated_buffer_shape_attribute_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_automated_buffer_shape_attribute_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_automated_chunk_shape_attribute_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_automated_chunk_shape_attribute_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_buffer_gb_option (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_buffer_gb_option) ... ok test_buffer_option_assertion_exceed_maxshape (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_buffer_option_assertion_exceed_maxshape) ... ok test_buffer_option_assertion_negative_buffer_gb (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_buffer_option_assertion_negative_buffer_gb) ... ok test_buffer_option_assertion_negative_shape (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_buffer_option_assertion_negative_shape) ... ok test_buffer_shape_option (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_buffer_shape_option) ... ok test_chunk_mb_option (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_mb_option) ... ok test_chunk_mb_option_larger_than_total_size (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_mb_option_larger_than_total_size) Chunk is larger than total data size; should collapse to maxshape. ... ok test_chunk_mb_option_while_condition (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_mb_option_while_condition) Test to evoke while condition of default shaping method. ... ok test_chunk_mb_option_while_condition_unit_maxshape_axis (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_mb_option_while_condition_unit_maxshape_axis) Test to evoke while condition of default shaping method. ... ok test_chunk_option_assertion_negative_chunk_mb (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_option_assertion_negative_chunk_mb) ... ok test_chunk_option_assertion_negative_shape (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_option_assertion_negative_shape) ... ok test_chunk_shape_option (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_chunk_shape_option) ... ok test_direct_pickle_assertion (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_direct_pickle_assertion) ... ok test_joint_option_assertions (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_joint_option_assertions) ... ok test_manual_buffer_shape_attribute_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_manual_buffer_shape_attribute_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_manual_chunk_shape_attribute_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_manual_chunk_shape_attribute_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_maxshape_attribute_contains_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_maxshape_attribute_contains_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_np_dtype_maxshape_attribute_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_np_dtype_maxshape_attribute_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_num_buffers (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_num_buffers) ... ok test_numpy_array_chunk_iterator (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_numpy_array_chunk_iterator) ... ok test_pickle (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_pickle) ... ok test_private_from_dict_assertion (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_private_from_dict_assertion) ... ok test_private_to_dict_assertion (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_private_to_dict_assertion) ... ok test_progress_bar (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_progress_bar) ... skipped 'optional tqdm module is not installed' test_progress_bar_assertion (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_progress_bar_assertion) ... skipped 'optional tqdm module is not installed' test_progress_bar_class (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_progress_bar_class) ... skipped 'optional tqdm module is not installed' test_progress_bar_no_options (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_progress_bar_no_options) ... skipped 'optional tqdm module is installed' test_selection_slices_int_type (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_selection_slices_int_type) Motivated by issues described in https://github.com/hdmf-dev/hdmf/pull/780 & 781 regarding return types. ... ok test_tqdm_not_installed (tests.unit.utils_test.test_core_GenericDataChunkIterator.GenericDataChunkIteratorTests.test_tqdm_not_installed) ... ok test_default_message (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorResultTests.test_default_message) ... ok test_ensure_use_of_tuples_during_asignment (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorResultTests.test_ensure_use_of_tuples_during_asignment) ... ok test_set_error_to_illegal_type (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorResultTests.test_set_error_to_illegal_type) ... ok test_DataChunkIterator_error_on_undetermined_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_DataChunkIterator_error_on_undetermined_axis) ... ok test_DataChunkIterator_ignore_undetermined_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_DataChunkIterator_ignore_undetermined_axis) ... ok test_DataChunkIterators_match (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_DataChunkIterators_match) ... ok test_DynamicTableRegion_shape_validation (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_DynamicTableRegion_shape_validation) ... ok test_array_all_dimensions_match (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_all_dimensions_match) ... ok test_array_axis_index_out_of_bounds_mutilple_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_axis_index_out_of_bounds_mutilple_axis) ... ok test_array_axis_index_out_of_bounds_single_axis (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_axis_index_out_of_bounds_single_axis) ... ok test_array_dimensions_mismatch (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_dimensions_mismatch) ... ok test_array_unequal_number_of_axes_for_comparison (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_unequal_number_of_axes_for_comparison) ... ok test_array_unequal_number_of_dimensions (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_unequal_number_of_dimensions) ... ok test_array_unequal_number_of_dimensions_check_multiple_axesy (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_unequal_number_of_dimensions_check_multiple_axesy) ... ok test_array_unequal_number_of_dimensions_check_one_axis_only (tests.unit.utils_test.test_core_ShapeValidator.ShapeValidatorTests.test_array_unequal_number_of_dimensions_check_one_axis_only) ... ok test_append_exception (tests.unit.utils_test.test_data_utils.TestAppendData.test_append_exception) ... ok test_append_data_zarr (tests.unit.utils_test.test_data_utils.TestZarrAppendData.test_append_data_zarr) ... skipped 'optional Zarr package is not installed' test_allow_none (tests.unit.utils_test.test_docval.TestDocValidator.test_allow_none) Test that docval with allow_none=True and non-None default value works ... ok test_allow_none_false (tests.unit.utils_test.test_docval.TestDocValidator.test_allow_none_false) Test that docval with allow_none=True and non-None default value works ... ok test_allow_none_no_default (tests.unit.utils_test.test_docval.TestDocValidator.test_allow_none_no_default) Test that docval with allow_none=True and no default raises an error ... ok test_allow_none_redundant (tests.unit.utils_test.test_docval.TestDocValidator.test_allow_none_redundant) Test that docval with allow_none=True and default=None works ... ok test_allow_positional_error (tests.unit.utils_test.test_docval.TestDocValidator.test_allow_positional_error) ... ok test_allow_positional_warn (tests.unit.utils_test.test_docval.TestDocValidator.test_allow_positional_warn) ... ok test_bad_shape (tests.unit.utils_test.test_docval.TestDocValidator.test_bad_shape) ... ok test_bad_type (tests.unit.utils_test.test_docval.TestDocValidator.test_bad_type) ... ok test_bool_string_type (tests.unit.utils_test.test_docval.TestDocValidator.test_bool_string_type) ... ok test_bool_type (tests.unit.utils_test.test_docval.TestDocValidator.test_bool_type) ... ok test_call_docval_func (tests.unit.utils_test.test_docval.TestDocValidator.test_call_docval_func) Test that call_docval_func strips extra args and calls the function. ... ok test_catch_dup_names (tests.unit.utils_test.test_docval.TestDocValidator.test_catch_dup_names) Test that docval does not allow duplicate argument names ... ok test_docval_add (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add) Test that docval works with a single positional ... ok test_docval_add2 (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2) Test that docval works with two positional ... ok test_docval_add2_kw_all_kw_syntax (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_all_kw_syntax) Test that docval works with two positional ... ok test_docval_add2_kw_default (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_default) Test that docval works with two positional ... ok test_docval_add2_kw_default_sub (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_default_sub) Test that docval works with a four positional arguments and ... ok test_docval_add2_kw_default_sub_missing_args (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_default_sub_missing_args) Test that docval catches missing arguments with a four positional arguments ... ok test_docval_add2_kw_kw_syntax (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_kw_syntax) Test that docval works with two positional ... ok test_docval_add2_kw_kwsyntax_sub (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_kwsyntax_sub) Test that docval works when called with a four positional ... ok test_docval_add2_kw_kwsyntax_sub_missing_args (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_kwsyntax_sub_missing_args) Test that docval catches missing arguments when called with a four positional ... ok test_docval_add2_kw_kwsyntax_sub_nonetype_arg (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_kwsyntax_sub_nonetype_arg) Test that docval catches NoneType when called with a four positional ... ok test_docval_add2_kw_pos_syntax (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_pos_syntax) Test that docval works with two positional ... ok test_docval_add2_kw_pos_syntax_missing_args (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_kw_pos_syntax_missing_args) Test that docval catches incorrect type with two positional ... ok test_docval_add2_pos_as_kw (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_pos_as_kw) Test that docval works with two positional ... ok test_docval_add2_w_unicode (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add2_w_unicode) Test that docval works with two positional ... ok test_docval_add_kw (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add_kw) Test that docval works with a single positional ... ok test_docval_add_missing_args (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add_missing_args) Test that docval catches missing argument ... ok test_docval_add_sub (tests.unit.utils_test.test_docval.TestDocValidator.test_docval_add_sub) Test that docval works with a two positional arguments, ... ok test_dup_kw (tests.unit.utils_test.test_docval.TestDocValidator.test_dup_kw) Test that docval raises an error if a keyword argument ... ok test_enum_bad_type (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_bad_type) Test that docval with an enum check where the arg type includes an invalid enum type fails ... ok test_enum_bool_mixed (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_bool_mixed) Test that the basic usage of an enum check on a tuple of bool, int, float, and string works ... ok test_enum_float (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_float) Test that the basic usage of an enum check on floats works ... ok test_enum_forbidden_values (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_forbidden_values) Test that docval with enum values that include a forbidden type fails ... ok test_enum_int (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_int) Test that the basic usage of an enum check on ints works ... ok test_enum_none_type (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_none_type) Test that the basic usage of an enum check on None works ... ok test_enum_single_allowed (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_single_allowed) Test that docval with an enum check on a single value fails ... ok test_enum_str (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_str) Test that the basic usage of an enum check on strings works ... ok test_enum_str_default (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_str_default) Test that docval with an enum check on strings and a default value works ... ok test_enum_str_none_default (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_str_none_default) Test that docval with an enum check on strings and a None default value works ... ok test_enum_uint (tests.unit.utils_test.test_docval.TestDocValidator.test_enum_uint) Test that the basic usage of an enum check on uints works ... ok test_extra_args_dup_kw (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_args_dup_kw) Test that docval raises an error if a keyword argument ... ok test_extra_args_pos_kw (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_args_pos_kw) Test that docval raises an error if too many positional ... ok test_extra_args_pos_kw_ok (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_args_pos_kw_ok) Test that docval does not raise an error if too many ... ok test_extra_args_pos_only (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_args_pos_only) Test that docval raises an error if too many positional ... ok test_extra_args_pos_only_ok (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_args_pos_only_ok) Test that docval raises an error if too many positional ... ok test_extra_kwarg (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_kwarg) Test that docval parses arguments when only keyword ... ok test_extra_kwargs_pos_kw (tests.unit.utils_test.test_docval.TestDocValidator.test_extra_kwargs_pos_kw) Test that docval raises an error if extra keyword ... ok test_fmt_docval_args (tests.unit.utils_test.test_docval.TestDocValidator.test_fmt_docval_args) Test that fmt_docval_args parses the args and strips extra args ... ok test_fmt_docval_args_allow_extra (tests.unit.utils_test.test_docval.TestDocValidator.test_fmt_docval_args_allow_extra) Test that fmt_docval_args works ... ok test_fmt_docval_args_no_docval (tests.unit.utils_test.test_docval.TestDocValidator.test_fmt_docval_args_no_docval) Test that fmt_docval_args raises an error when run on function without docval ... ok test_get_docval_all (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_all) Test that get_docval returns a tuple of the docval arguments ... ok test_get_docval_missing_arg (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_missing_arg) Test that get_docval throws error if the matching docval argument is not found ... ok test_get_docval_missing_arg_of_many_ok (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_missing_arg_of_many_ok) Test that get_docval throws error if the matching docval arguments is not found ... ok test_get_docval_missing_args (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_missing_args) Test that get_docval throws error if the matching docval arguments is not found ... ok test_get_docval_none (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_none) Test that get_docval returns an empty tuple if there is no docval ... ok test_get_docval_none_arg (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_none_arg) Test that get_docval throws error if there is no docval and an argument name is passed ... ok test_get_docval_one_arg (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_one_arg) Test that get_docval returns the matching docval argument ... ok test_get_docval_two_args (tests.unit.utils_test.test_docval.TestDocValidator.test_get_docval_two_args) Test that get_docval returns the matching docval arguments in order ... ok test_multi_shape (tests.unit.utils_test.test_docval.TestDocValidator.test_multi_shape) ... ok test_nested_return_types (tests.unit.utils_test.test_docval.TestDocValidator.test_nested_return_types) Test that having nested tuple rtype creates valid sphinx references ... ok test_only_kw_arg1_arg2 (tests.unit.utils_test.test_docval.TestDocValidator.test_only_kw_arg1_arg2) Test that docval parses arguments when only keyword ... ok test_only_kw_arg1_arg2_pos (tests.unit.utils_test.test_docval.TestDocValidator.test_only_kw_arg1_arg2_pos) Test that docval parses arguments when only keyword ... ok test_only_kw_arg1_no_arg2 (tests.unit.utils_test.test_docval.TestDocValidator.test_only_kw_arg1_no_arg2) Test that docval parses arguments when only keyword ... ok test_only_kw_arg1_pos_no_arg2 (tests.unit.utils_test.test_docval.TestDocValidator.test_only_kw_arg1_pos_no_arg2) Test that docval parses arguments when only keyword ... ok test_only_kw_arg2_no_arg1 (tests.unit.utils_test.test_docval.TestDocValidator.test_only_kw_arg2_no_arg1) Test that docval parses arguments when only keyword ... ok test_only_kw_no_args (tests.unit.utils_test.test_docval.TestDocValidator.test_only_kw_no_args) Test that docval parses arguments when only keyword ... ok test_uint_string_type (tests.unit.utils_test.test_docval.TestDocValidator.test_uint_string_type) Test that docval type specification of string 'uint' matches np.uint of all available precisions. ... ok test_uint_type (tests.unit.utils_test.test_docval.TestDocValidator.test_uint_type) Test that docval type specification of np.uint32 works as expected. ... ok test_unsupported_docval_term (tests.unit.utils_test.test_docval.TestDocValidator.test_unsupported_docval_term) Test that docval does not allow setting of arguments ... ok test_shape_invalid_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_invalid_unpack) Test that passing an object for an argument with required shape and object.argument has an invalid shape ... ok test_shape_invalid_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_invalid_unpack_default) Test that passing an object for an argument with required shape and a default value and object.argument has ... ok test_shape_none_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_none_unpack) Test that passing an object for an argument with required shape and object.argument is None is OK ... ok test_shape_none_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_none_unpack_default) Test that passing an object for an argument with required shape and a default value and object.argument is ... ok test_shape_other_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_other_unpack) Test that passing an object for an argument with required shape and object.argument is an object without ... ok test_shape_other_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_other_unpack_default) Test that passing an object for an argument with required shape and a default value and object.argument is ... ok test_shape_valid_unpack (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_valid_unpack) Test that passing an object for an argument with required shape tests the shape of object.argument ... ok test_shape_valid_unpack_default (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_shape_valid_unpack_default) Test that passing an object for an argument with required shape and a default value tests the shape of ... ok test_type_arg (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_type_arg) Test that passing an object for an argument that allows a specific type works ... ok test_type_arg_wrong_type (tests.unit.utils_test.test_docval.TestDocValidatorChain.test_type_arg_wrong_type) Test that passing an object for an argument that does not match a specific type raises an error ... ok test_arg_not_found_many_args (tests.unit.utils_test.test_docval.TestGetargs.test_arg_not_found_many_args) ... ok test_arg_not_found_one_arg (tests.unit.utils_test.test_docval.TestGetargs.test_arg_not_found_one_arg) ... ok test_last_arg_not_dict (tests.unit.utils_test.test_docval.TestGetargs.test_last_arg_not_dict) ... ok test_many_args_get_all (tests.unit.utils_test.test_docval.TestGetargs.test_many_args_get_all) ... ok test_many_args_get_some (tests.unit.utils_test.test_docval.TestGetargs.test_many_args_get_some) ... ok test_many_args_reverse (tests.unit.utils_test.test_docval.TestGetargs.test_many_args_reverse) ... ok test_many_args_unpack (tests.unit.utils_test.test_docval.TestGetargs.test_many_args_unpack) ... ok test_one_arg_first (tests.unit.utils_test.test_docval.TestGetargs.test_one_arg_first) ... ok test_one_arg_second (tests.unit.utils_test.test_docval.TestGetargs.test_one_arg_second) ... ok test_too_few_args (tests.unit.utils_test.test_docval.TestGetargs.test_too_few_args) ... ok test_macro (tests.unit.utils_test.test_docval.TestMacro.test_macro) ... ok test_arg_not_found_many_args (tests.unit.utils_test.test_docval.TestPopargs.test_arg_not_found_many_args) ... ok test_arg_not_found_one_arg (tests.unit.utils_test.test_docval.TestPopargs.test_arg_not_found_one_arg) ... ok test_last_arg_not_dict (tests.unit.utils_test.test_docval.TestPopargs.test_last_arg_not_dict) ... ok test_many_args_pop_all (tests.unit.utils_test.test_docval.TestPopargs.test_many_args_pop_all) ... ok test_many_args_pop_some (tests.unit.utils_test.test_docval.TestPopargs.test_many_args_pop_some) ... ok test_many_args_reverse (tests.unit.utils_test.test_docval.TestPopargs.test_many_args_reverse) ... ok test_many_args_unpack (tests.unit.utils_test.test_docval.TestPopargs.test_many_args_unpack) ... ok test_one_arg_first (tests.unit.utils_test.test_docval.TestPopargs.test_one_arg_first) ... ok test_one_arg_second (tests.unit.utils_test.test_docval.TestPopargs.test_one_arg_second) ... ok test_too_few_args (tests.unit.utils_test.test_docval.TestPopargs.test_too_few_args) ... ok test_arg_not_found_one_arg (tests.unit.utils_test.test_docval.TestPopargsToDict.test_arg_not_found_one_arg) ... ok test_many_args_pop_all (tests.unit.utils_test.test_docval.TestPopargsToDict.test_many_args_pop_all) ... ok test_many_args_pop_some (tests.unit.utils_test.test_docval.TestPopargsToDict.test_many_args_pop_some) ... ok test_one_arg_first (tests.unit.utils_test.test_docval.TestPopargsToDict.test_one_arg_first) ... ok test_one_arg_second (tests.unit.utils_test.test_docval.TestPopargsToDict.test_one_arg_second) ... ok test_check_type (tests.unit.utils_test.test_docval.TestStringType.test_check_type) ... ok test_docstring (tests.unit.utils_test.test_docval.TestStringType.test_docstring) ... ok test_add_basic (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_add_basic) Test add method on object with correct key_attr. ... ok test_add_callable (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_add_callable) Test that add properly adds the object and calls the add_callable function. ... ok test_add_value_missing_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_add_value_missing_key) Test that add raises an error if the value being set does not have the attribute key_attr. ... ok test_clear_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_clear_callback) ... ok test_clear_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_clear_nocallback) ... ok test_constructor (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_constructor) Test that constructor sets arguments properly. ... ok test_constructor_default (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_constructor_default) Test that constructor sets default key attribute. ... ok test_delitem_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_delitem_callback) ... ok test_delitem_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_delitem_nocallback) ... ok test_getitem_eqeq_no_key_attr (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_no_key_attr) Test that dict[key_attr == val] raises an error if key_attr is not given. ... ok test_getitem_eqeq_no_key_attr_no_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_no_key_attr_no_val) Test that dict[key_attr == val] raises an error if key_attr is not given and val is not given. ... ok test_getitem_eqeq_no_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_no_val) Test that dict[key_attr == val] raises an error if val is not given. ... ok test_getitem_eqeq_nonempty (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_nonempty) Test that dict[key_attr == val] returns the single matching object. ... ok test_getitem_eqeq_nonempty_key_attr_no_match (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_nonempty_key_attr_no_match) Test that dict[key_attr == unknown_val] where a matching value is not found raises a KeyError. ... ok test_getitem_eqeq_nonempty_unknown_attr (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_nonempty_unknown_attr) Test that dict[unknown_attr == val] where unknown_attr is not a field on the values raises an error. ... ok test_getitem_eqeq_other_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_other_key) Test that dict[other_attr == val] where there are no query matches returns an empty set. ... ok test_getitem_eqeq_unknown_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_eqeq_unknown_val) Test that dict[unknown_attr == val] where there are no query matches returns an empty set. ... ok test_getitem_nonempty_other_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_nonempty_other_key) Test that dict[other_key == val] returns a set of matching objects. ... ok test_getitem_unknown_val (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_getitem_unknown_val) Test that dict[unknown_key] where the key unknown_key is not in the dict raises an error. ... ok test_pop_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_pop_callback) ... ok test_pop_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_pop_nocallback) ... ok test_popitem_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_popitem_callback) ... ok test_popitem_nocallback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_popitem_nocallback) ... ok test_set_key_attr (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_set_key_attr) Test that the key attribute cannot be set after initialization. ... ok test_setdefault_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_setdefault_callback) ... ok test_setitem_callable (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_setitem_callable) Test that setitem properly sets the object and calls the add_callable function. ... ok test_setitem_getitem_basic (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_setitem_getitem_basic) Test that setitem and getitem properly set and get the object. ... ok test_setitem_value_duplicate_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_setitem_value_duplicate_key) Test that setitem raises an error if the key already exists in the dict. ... ok test_setitem_value_inconsistent_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_setitem_value_inconsistent_key) Test that setitem raises an error if the value being set has an inconsistent key. ... ok test_setitem_value_missing_key (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_setitem_value_missing_key) Test that setitem raises an error if the value being set does not have the attribute key_attr. ... ok test_update_callback (tests.unit.utils_test.test_labelleddict.TestLabelledDict.test_update_callback) ... ok test_arbitrary_iterable_with_len (tests.unit.utils_test.test_utils.TestGetDataShape.test_arbitrary_iterable_with_len) Test get_data_shape with strict_no_data_load=True on an arbitrary iterable object with __len__. ... ok test_dataio (tests.unit.utils_test.test_utils.TestGetDataShape.test_dataio) Test get_data_shape on DataIO of various shapes and maxshape. ... ok test_dci (tests.unit.utils_test.test_utils.TestGetDataShape.test_dci) Test get_data_shape on DataChunkIterators of various shapes and maxshape. ... ok test_h5dataset (tests.unit.utils_test.test_utils.TestGetDataShape.test_h5dataset) Test get_data_shape on h5py.Datasets of various shapes and maxshape. ... ok test_list (tests.unit.utils_test.test_utils.TestGetDataShape.test_list) Test get_data_shape on lists of various shapes. ... ok test_nparray (tests.unit.utils_test.test_utils.TestGetDataShape.test_nparray) Test get_data_shape on numpy arrays of various shapes. ... ok test_other (tests.unit.utils_test.test_utils.TestGetDataShape.test_other) Test get_data_shape on miscellaneous edge cases. ... ok test_set (tests.unit.utils_test.test_utils.TestGetDataShape.test_set) Test get_data_shape on sets, which have __len__ but are not subscriptable. ... ok test_strict_no_data_load (tests.unit.utils_test.test_utils.TestGetDataShape.test_strict_no_data_load) Test get_data_shape with strict_no_data_load=True on nested lists/tuples is the same as when it is False. ... ok test_string (tests.unit.utils_test.test_utils.TestGetDataShape.test_string) Test get_data_shape on strings and collections of strings. ... ok test_tuple (tests.unit.utils_test.test_utils.TestGetDataShape.test_tuple) Test get_data_shape on tuples of various shapes. ... ok test_list_float (tests.unit.utils_test.test_utils.TestToUintArray.test_list_float) ... ok test_list_int (tests.unit.utils_test.test_utils.TestToUintArray.test_list_int) ... ok test_list_int_neg (tests.unit.utils_test.test_utils.TestToUintArray.test_list_int_neg) ... ok test_ndarray_float (tests.unit.utils_test.test_utils.TestToUintArray.test_ndarray_float) ... ok test_ndarray_int (tests.unit.utils_test.test_utils.TestToUintArray.test_ndarray_int) ... ok test_ndarray_int_neg (tests.unit.utils_test.test_utils.TestToUintArray.test_ndarray_int_neg) ... ok test_ndarray_uint (tests.unit.utils_test.test_utils.TestToUintArray.test_ndarray_uint) ... ok test_equal_with_no_location (tests.unit.validator_tests.test_errors.TestErrorEquality.test_equal_with_no_location) Verify that two errors with no location but the same name are equal ... ok test_equal_with_overlapping_name_when_location_present (tests.unit.validator_tests.test_errors.TestErrorEquality.test_equal_with_overlapping_name_when_location_present) Verify that two errors with an overlapping name and a location are equal ... ok test_equality_with_same_field_values (tests.unit.validator_tests.test_errors.TestErrorEquality.test_equality_with_same_field_values) Verify that two errors with the same field values are equal ... ok test_not_equal_with_different_location (tests.unit.validator_tests.test_errors.TestErrorEquality.test_not_equal_with_different_location) Verify that two errors with a different location are not equal ... ok test_not_equal_with_different_name (tests.unit.validator_tests.test_errors.TestErrorEquality.test_not_equal_with_different_name) Verify that two errors with a different name are not equal ... ok test_not_equal_with_different_reason (tests.unit.validator_tests.test_errors.TestErrorEquality.test_not_equal_with_different_reason) Verify that two errors with a different reason are not equal ... ok test_not_equal_with_overlapping_name_when_no_location (tests.unit.validator_tests.test_errors.TestErrorEquality.test_not_equal_with_overlapping_name_when_no_location) Verify that two errors with an overlapping name but no location are ... ok test_self_equality (tests.unit.validator_tests.test_errors.TestErrorEquality.test_self_equality) Verify that one error equals itself ... ok test_empty_list (tests.unit.validator_tests.test_validate.Test1DArrayValidation.test_empty_list) Test that validator allows an empty list where an array is specified. ... ok test_empty_nparray (tests.unit.validator_tests.test_validate.Test1DArrayValidation.test_empty_nparray) Test that validator allows an empty numpy array where an array is specified. ... ok test_scalar (tests.unit.validator_tests.test_validate.Test1DArrayValidation.test_scalar) Test that validator does not allow a scalar where an array is specified. ... ok test_invalid_incorrect_type_get_validator (tests.unit.validator_tests.test_validate.TestBasicSpec.test_invalid_incorrect_type_get_validator) ... ok test_invalid_incorrect_type_validate (tests.unit.validator_tests.test_validate.TestBasicSpec.test_invalid_incorrect_type_validate) ... ok test_invalid_missing (tests.unit.validator_tests.test_validate.TestBasicSpec.test_invalid_missing) ... ok test_valid (tests.unit.validator_tests.test_validate.TestBasicSpec.test_valid) ... ok test_invalid_cpd_isodatetime_array (tests.unit.validator_tests.test_validate.TestDateTimeInSpec.test_invalid_cpd_isodatetime_array) ... ok test_invalid_isodatetime (tests.unit.validator_tests.test_validate.TestDateTimeInSpec.test_invalid_isodatetime) ... ok test_invalid_isodatetime_array (tests.unit.validator_tests.test_validate.TestDateTimeInSpec.test_invalid_isodatetime_array) ... ok test_valid_isodatetime (tests.unit.validator_tests.test_validate.TestDateTimeInSpec.test_valid_isodatetime) ... ok test_ascii_for_utf8 (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_ascii_for_utf8) Test that validator allows ASCII data where UTF8 is specified. ... ok test_bool_for_numeric (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_bool_for_numeric) Test that validator does not allow bool data where numeric is specified. ... ok test_int64_for_int8 (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_int64_for_int8) Test that validator allows int64 data where int8 is specified. ... ok test_int64_for_numeric (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_int64_for_numeric) Test that validator allows int64 data where numeric is specified. ... ok test_int8_for_int64 (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_int8_for_int64) Test that validator does not allow int8 data where int64 is specified. ... ok test_np_bool_for_bool (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_np_bool_for_bool) Test that validator allows np.bool_ data where bool is specified. ... ok test_scalar_compound_dtype (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_scalar_compound_dtype) Test that validator allows scalar compound dtype data where a compound dtype is specified. ... ok test_utf8_for_ascii (tests.unit.validator_tests.test_validate.TestDtypeValidation.test_utf8_for_ascii) Test that validator does not allow UTF8 where ASCII is specified. ... ok test_empty_int_attribute (tests.unit.validator_tests.test_validate.TestEmptyDataRoundTrip.test_empty_int_attribute) Verify that we can determine dtype for empty integer attribute during validation ... ok test_empty_int_dataset (tests.unit.validator_tests.test_validate.TestEmptyDataRoundTrip.test_empty_int_dataset) Verify that a dataset builder containing an array of references passes ... ok test_empty_string_attribute (tests.unit.validator_tests.test_validate.TestEmptyDataRoundTrip.test_empty_string_attribute) Verify that we can determine dtype for empty string attribute during validation ... ok test_empty_string_dataset (tests.unit.validator_tests.test_validate.TestEmptyDataRoundTrip.test_empty_string_dataset) Verify that we can determine dtype for empty string dataset during validation ... ok test_invalid_missing_req_type (tests.unit.validator_tests.test_validate.TestEmptySpec.test_invalid_missing_req_type) ... ok test_valid (tests.unit.validator_tests.test_validate.TestEmptySpec.test_valid) ... ok test_missing_additional_attribute_on_anonymous_data_type_extension (tests.unit.validator_tests.test_validate.TestExtendedIncDataTypes.test_missing_additional_attribute_on_anonymous_data_type_extension) Verify that a MissingError is returned when a required attribute from an ... ok test_redundant_attribute_in_spec (tests.unit.validator_tests.test_validate.TestExtendedIncDataTypes.test_redundant_attribute_in_spec) Test that only one MissingError is returned when an attribute is missing ... ok test_validate_child_type_against_anonymous_data_type_extension (tests.unit.validator_tests.test_validate.TestExtendedIncDataTypes.test_validate_child_type_against_anonymous_data_type_extension) Verify that a MissingError is returned when a required attribute from an ... ok test_error_on_missing_child_dataset (tests.unit.validator_tests.test_validate.TestLinkAndChildMatchingDataType.test_error_on_missing_child_dataset) Test that a MissingDataType is returned when the child dataset is missing ... ok test_error_on_missing_group (tests.unit.validator_tests.test_validate.TestLinkAndChildMatchingDataType.test_error_on_missing_group) Test that a MissingDataType is returned when the child group is missing ... ok test_error_on_missing_linked_dataset (tests.unit.validator_tests.test_validate.TestLinkAndChildMatchingDataType.test_error_on_missing_linked_dataset) Test that a MissingDataType is returned when the linked dataset is missing ... ok test_error_on_missing_linked_group (tests.unit.validator_tests.test_validate.TestLinkAndChildMatchingDataType.test_error_on_missing_linked_group) Test that a MissingDataType is returned when the linked group is missing ... ok test_should_not_validate_illegally_linked_objects (tests.unit.validator_tests.test_validate.TestLinkable.test_should_not_validate_illegally_linked_objects) Test that an illegally linked child dataset is not validated ... ok test_typed_linkable_dataset_accepts_link (tests.unit.validator_tests.test_validate.TestLinkable.test_typed_linkable_dataset_accepts_link) Test that the validator accepts a link when the spec has a typed linkable dataset ... ok test_typed_linkable_group_accepts_link (tests.unit.validator_tests.test_validate.TestLinkable.test_typed_linkable_group_accepts_link) Test that the validator accepts a link when the spec has a typed linkable group ... ok test_typed_nonlinkable_dataset_does_not_accept_link (tests.unit.validator_tests.test_validate.TestLinkable.test_typed_nonlinkable_dataset_does_not_accept_link) Test that the validator returns an IllegalLinkError when the spec has a typed non-linkable dataset ... ok test_typed_nonlinkable_group_does_not_accept_link (tests.unit.validator_tests.test_validate.TestLinkable.test_typed_nonlinkable_group_does_not_accept_link) Test that the validator returns an IllegalLinkError when the spec has a typed non-linkable group ... ok test_untyped_linkable_dataset_accepts_link (tests.unit.validator_tests.test_validate.TestLinkable.test_untyped_linkable_dataset_accepts_link) Test that the validator accepts a link when the spec has an untyped linkable dataset ... ok test_untyped_linkable_group_accepts_link (tests.unit.validator_tests.test_validate.TestLinkable.test_untyped_linkable_group_accepts_link) Test that the validator accepts a link when the spec has an untyped linkable group ... ok test_untyped_nonlinkable_dataset_does_not_accept_link (tests.unit.validator_tests.test_validate.TestLinkable.test_untyped_nonlinkable_dataset_does_not_accept_link) Test that the validator returns an IllegalLinkError when the spec has an untyped non-linkable dataset ... ok test_untyped_nonlinkable_group_does_not_accept_link (tests.unit.validator_tests.test_validate.TestLinkable.test_untyped_nonlinkable_group_does_not_accept_link) Test that the validator returns an IllegalLinkError when the spec has an untyped non-linkable group ... ok test_both_levels_of_hierarchy_validated (tests.unit.validator_tests.test_validate.TestMultipleChildrenAtDifferentLevelsOfInheritance.test_both_levels_of_hierarchy_validated) Test that when both required children at separate levels of ... ok test_both_levels_of_hierarchy_validated_inverted_order (tests.unit.validator_tests.test_validate.TestMultipleChildrenAtDifferentLevelsOfInheritance.test_both_levels_of_hierarchy_validated_inverted_order) Test that when both required children at separate levels of ... skipped 'Functionality not yet supported' test_error_returned_when_child_at_highest_level_missing (tests.unit.validator_tests.test_validate.TestMultipleChildrenAtDifferentLevelsOfInheritance.test_error_returned_when_child_at_highest_level_missing) Test that a MissingDataType error is returned when the dataset at ... ok test_error_returned_when_child_at_lowest_level_missing (tests.unit.validator_tests.test_validate.TestMultipleChildrenAtDifferentLevelsOfInheritance.test_error_returned_when_child_at_lowest_level_missing) Test that a MissingDataType error is returned when the dataset at ... ok test_missing_first_dataset_should_return_error (tests.unit.validator_tests.test_validate.TestMultipleNamedChildrenOfSameType.test_missing_first_dataset_should_return_error) Test that the validator returns a MissingDataType error if the first dataset is missing ... ok test_missing_first_group_should_return_error (tests.unit.validator_tests.test_validate.TestMultipleNamedChildrenOfSameType.test_missing_first_group_should_return_error) Test that the validator returns a MissingDataType error if the first group is missing ... ok test_missing_last_dataset_should_return_error (tests.unit.validator_tests.test_validate.TestMultipleNamedChildrenOfSameType.test_missing_last_dataset_should_return_error) Test that the validator returns a MissingDataType error if the last dataset is missing ... ok test_missing_last_group_should_return_error (tests.unit.validator_tests.test_validate.TestMultipleNamedChildrenOfSameType.test_missing_last_group_should_return_error) Test that the validator returns a MissingDataType error if the last group is missing ... ok test_no_errors_when_all_children_satisfied (tests.unit.validator_tests.test_validate.TestMultipleNamedChildrenOfSameType.test_no_errors_when_all_children_satisfied) Test that the validator does not return an error if all child specs are satisfied ... ok test_invalid_missing_named_req_group (tests.unit.validator_tests.test_validate.TestNestedTypes.test_invalid_missing_named_req_group) Test that a MissingDataType is returned when a required named nested data type is missing. ... ok test_invalid_missing_unnamed_req_group (tests.unit.validator_tests.test_validate.TestNestedTypes.test_invalid_missing_unnamed_req_group) Test that a MissingDataType is returned when a required unnamed nested data type is missing. ... ok test_invalid_wrong_name_req_type (tests.unit.validator_tests.test_validate.TestNestedTypes.test_invalid_wrong_name_req_type) Test that a MissingDataType is returned when a required nested data type is given the wrong name. ... ok test_valid (tests.unit.validator_tests.test_validate.TestNestedTypes.test_valid) Test that no errors are returned when nested data types are correctly built. ... ok test_valid_wo_opt_attr (tests.unit.validator_tests.test_validate.TestNestedTypes.test_valid_wo_opt_attr) "Test that no errors are returned when an optional attribute is omitted from a group. ... ok test_incorrect_fixed_quantity_should_return_incorrect_quantity_error (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_incorrect_fixed_quantity_should_return_incorrect_quantity_error) Verify that an incorrect quantity of groups/datasets/links should return an IncorrectQuantityError ... ok test_incorrect_quantity_error_message (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_incorrect_quantity_error_message) Verify that an IncorrectQuantityError includes the expected information in the message ... ok test_incorrect_zero_or_one_quantity_should_return_incorrect_quantity_error (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_incorrect_zero_or_one_quantity_should_return_incorrect_quantity_error) Verify that an incorrect ZERO_OR_ONE quantity of groups/datasets/links should return ... ok test_missing_fixed_quantity_should_not_return_incorrect_quantity_error (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_missing_fixed_quantity_should_not_return_incorrect_quantity_error) Verify that missing groups/datasets/links should not return an IncorrectQuantityError ... ok test_missing_one_or_many_should_not_return_incorrect_quantity_error (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_missing_one_or_many_should_not_return_incorrect_quantity_error) Verify that missing ONE_OR_MANY groups/datasets/links should not return an IncorrectQuantityError ... ok test_valid_fixed_quantity (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_valid_fixed_quantity) "Verify that groups/datasets/links with a correct fixed quantity correctly pass validation ... ok test_valid_one_or_many (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_valid_one_or_many) "Verify that groups/datasets/links with ONE_OR_MANY and a valid quantity correctly pass validation ... ok test_valid_zero_or_many (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_valid_zero_or_many) "Verify that groups/datasets/links with ZERO_OR_MANY and a valid quantity correctly pass validation ... ok test_valid_zero_or_one (tests.unit.validator_tests.test_validate.TestQuantityValidation.test_valid_zero_or_one) "Verify that groups/datasets/links with ZERO_OR_ONE and a valid quantity correctly pass validation ... ok test_round_trip_validation_of_compound_dtype_with_reference (tests.unit.validator_tests.test_validate.TestReferenceDatasetsRoundTrip.test_round_trip_validation_of_compound_dtype_with_reference) Verify that a dataset builder containing data with a compound dtype ... ok test_round_trip_validation_of_reference_dataset_array (tests.unit.validator_tests.test_validate.TestReferenceDatasetsRoundTrip.test_round_trip_validation_of_reference_dataset_array) Verify that a dataset builder containing an array of references passes ... ok test_str_coincidental_isodatetime (tests.unit.validator_tests.test_validate.TestStringDatetime.test_str_coincidental_isodatetime) Test validation of a text spec allows a string that coincidentally matches the isodatetime format. ... ok test_validate_subtype (tests.unit.validator_tests.test_validate.TestValidateSubspec.test_validate_subtype) Test that when spec A contains dataset B, and C is a subtype of B, using a C builder is valid. ... ok test_validate_subtype_error (tests.unit.validator_tests.test_validate.TestValidateSubspec.test_validate_subtype_error) Test that when spec A contains dataset B, and C is a subtype of B, using a C builder validates ... ok ---------------------------------------------------------------------- Ran 1579 tests in 17.514s OK (skipped=90, expected failures=1) create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-hdmf/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_installdocs -O--buildsystem=pybuild debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/reproducible-path/hdmf-3.14.5' rm -vf /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/share/doc/python3-hdmf/hdmf-common-schema/license.txt removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/share/doc/python3-hdmf/hdmf-common-schema/license.txt' make[1]: Leaving directory '/build/reproducible-path/hdmf-3.14.5' dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides ruamel_yaml. Please add package that provides it to Build-Depends or add "ruamel_yaml python3-ruamel-yaml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:339: Ignoring complex environment marker: linkml_runtime>=1.5.5; (python_version >= '3.9') and extra == 'termset' I: dh_python3 pydist:339: Ignoring complex environment marker: oaklib>=0.5.12; (python_version >= '3.9') and extra == 'termset' I: dh_python3 pydist:339: Ignoring complex environment marker: pyyaml>=6.0.1; (python_version >= '3.9') and extra == 'termset' I: dh_python3 pydist:339: Ignoring complex environment marker: schemasheets>=0.1.23; (python_version >= '3.9') and extra == 'termset' debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/hdmf-3.14.5' # These files holds documentation handled by d/docs. rm -rvf /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/Readme.md' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/Makefile' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/make.bat' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/format_description.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/format.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/conf.py' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png' removed directory '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/figures' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css' removed directory '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/_static' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/index.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/credits.rst' removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/software_process.rst' removed directory '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source' removed directory '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs' rm -vf /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/Legal.txt removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/Legal.txt' rm -vf /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/README.md removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/README.md' rm -vf /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/license.txt removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/license.txt' rm -vf /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/requirements-doc.txt removed '/build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/requirements-doc.txt' make[1]: Leaving directory '/build/reproducible-path/hdmf-3.14.5' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hdmf-3.14.5' chmod -x /build/reproducible-path/hdmf-3.14.5/debian/python3-hdmf/usr/lib/python3/dist-packages/hdmf/testing/validate_spec.py make[1]: Leaving directory '/build/reproducible-path/hdmf-3.14.5' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-hdmf' in '../python3-hdmf_3.14.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../hdmf_3.14.5-1_amd64.buildinfo dpkg-genchanges --build=binary -O../hdmf_3.14.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from hdmf-3.14.5/debian/source/options: --extend-diff-ignore=^src/[^/]+\.egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/525128/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/525128/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/525128 and its subdirectories I: Current time: Wed Jan 7 10:21:57 +14 2026 I: pbuilder-time-stamp: 1767730917