I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 20 01:48:06 +14 2025 I: pbuilder-time-stamp: 1760874486 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.8.0-1.dsc] I: copying [./fenicsx-performance-tests_0.8.0.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.8.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat May 4 12:08:06 2024 gpgv: using RSA key 1B5D04B1E507BBF03669E2B801F35FC33E73AF8C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.8.0-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.8.0 dpkg-source: info: unpacking fenicsx-performance-tests_0.8.0.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.8.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3791/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 19 11:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3791/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3791/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=acf9eb19c7f94c79bedea46759560118 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3791 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IWqmdNxU/pbuilderrc_6aiq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IWqmdNxU/b2 --logfile b2/build.log fenicsx-performance-tests_0.8.0-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.10.6+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.6-1~bpo12+1 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3791/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 1:0.8~), libdolfinx-real-dev, mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19737 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 1:0.8~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-real-dev; however: Package libdolfinx-real-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cpp-13{a} cpp-13-x86-64-linux-gnu{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gcc-13{a} gcc-13-base{a} gcc-13-x86-64-linux-gnu{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-x86-64-linux-gnu{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-core-2{a} libadios2-mpi-core-dev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libbasix-dev{a} libbasix0.8{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.8{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-13-dev{a} libgfortran-13-dev{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.29.0{a} libhypre-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.6t64{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libp11-kit-dev{a} libparpack2-dev{a} libparpack2t64{a} libparu0{a} libpciaccess0{a} libpetsc-real3.20{a} libpetsc-real3.20-dev{a} libpetsc3.20-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash0{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.20{a} libslepc-real3.20-dev{a} libsodium23{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu6{a} libsz2{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-aztecoo-dev{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-ml-dev{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-trilinosss-dev{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtrilinos-zoltan-dev{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libz3-4{a} libzmq5{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-ffcx{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} trilinos-dev{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.20-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix wget xauth zsh 0 packages upgraded, 356 newly installed, 0 to remove and 0 not upgraded. Need to get 326 MB of archives. After unpacking 1477 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.5-1+b1 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.5-1+b1 [9884 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.5-1+b1 [27.9 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-5 [64.7 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-5 [878 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-7 [96.8 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libcbor0.10 amd64 0.10.2-1.1 [27.8 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libfido2-1 amd64 1.15.0-1 [78.5 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 openssh-client amd64 1:9.8p1-8 [965 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1 [349 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.9.1-2 [463 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.30.3-1 [2221 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.30.3-1 [11.4 MB] Get: 61 http://deb.debian.org/debian trixie/main amd64 gcc-13-base amd64 13.3.0-6 [47.0 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 cpp-13-x86-64-linux-gnu amd64 13.3.0-6 [9934 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 cpp-13 amd64 13.3.0-6 [1276 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libgcc-13-dev amd64 13.3.0-6 [2538 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 gcc-13-x86-64-linux-gnu amd64 13.3.0-6 [19.2 MB] Get: 67 http://deb.debian.org/debian trixie/main amd64 gcc-13 amd64 13.3.0-6 [496 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 73 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-3 [837 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgfortran-14-dev amd64 14.2.0-3 [880 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-3 [11.7 MB] Get: 83 http://deb.debian.org/debian trixie/main amd64 gfortran-14 amd64 14.2.0-3 [11.8 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2 [1284 B] Get: 85 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:14.1.0-2 [1436 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libgfortran-13-dev amd64 13.3.0-6 [847 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.3.0-6 [10.6 MB] Get: 88 http://deb.debian.org/debian trixie/main amd64 gfortran-13 amd64 13.3.0-6 [14.3 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 52.0-2 [61.6 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 52.0-2 [343 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-5 [207 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libadios2-common-c++11-dev all 2.9.2+dfsg1-13 [23.0 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libadios2-common-core-dev amd64 2.9.2+dfsg1-13+b2 [114 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 52.0-2 [70.2 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-2 amd64 2.9.2+dfsg1-13+b2 [422 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-dev amd64 2.9.2+dfsg1-13+b2 [21.2 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10 [131 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [53.9 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.11.0-2 [162 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.11.0-2 [17.9 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.3-2 [658 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 119 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-18 [23.6 MB] Get: 120 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get: 121 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.122-1 [7992 B] Get: 122 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.122-1 [38.7 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.122-1 [22.2 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-3 [510 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libibumad3 amd64 52.0-2 [27.7 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libibmad5 amd64 52.0-2 [43.3 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 133 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-4 [1312 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libpugixml1v5 amd64 1.14-2 [88.6 kB] Get: 136 http://deb.debian.org/debian trixie/main amd64 libsodium23 amd64 1.0.18-1+b1 [163 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b1 [132 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1 [221 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1 [161 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libzmq5 amd64 4.3.5-1+b2 [281 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-2 amd64 2.9.2+dfsg1-13+b2 [1656 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-2 amd64 2.9.2+dfsg1-13+b2 [197 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-dev amd64 2.9.2+dfsg1-13+b2 [78.2 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-dev amd64 2.9.2+dfsg1-13+b2 [9248 B] Get: 145 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.8.2+dfsg-1 [23.3 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.8.2+dfsg-1 [40.2 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-1.1+b2 [104 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libarpack2-dev amd64 3.9.1-1.1+b2 [119 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libbasix0.8 amd64 0.8.0-8 [393 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-3 [26.1 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libbasix-dev amd64 0.8.0-8 [62.6 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3.2 [10.6 MB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2 [234 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2 [235 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2 [240 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2 [245 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 166 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2 [230 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2 [333 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2 [372 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2 [239 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 171 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2 [281 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-3.2 [230 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-3.2 [231 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2 [297 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 176 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2 [329 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-5 [10.4 MB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2 [346 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2 [261 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 181 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83.0 amd64 1.83.0-3.2 [523 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83-dev amd64 1.83.0-3.2 [569 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 184 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2 [271 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libnl-3-dev amd64 3.7.0-0.3 [99.4 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-dev amd64 3.7.0-0.3 [199 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libibverbs-dev amd64 52.0-2 [647 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libnuma-dev amd64 2.0.18-1 [36.2 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libltdl-dev amd64 2.4.7-7+b1 [164 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 libhwloc-dev amd64 2.11.0-2 [251 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [181 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [107 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [60.8 kB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libevent-dev amd64 2.1.12-stable-10 [305 kB] Get: 197 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 198 http://deb.debian.org/debian trixie/main amd64 libpmix-dev amd64 5.0.3-2 [3954 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 4.1.6-13.3 [226 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libopenmpi-dev amd64 4.1.6-13.3 [972 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 mpi-default-dev amd64 1.17 [3148 B] Get: 204 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2 [290 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 206 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2 [347 kB] Get: 207 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2 [375 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 209 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 210 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2 [269 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-3.2 [276 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 213 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.2 [235 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83-dev amd64 1.83.0-3.2 [236 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 216 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b4 [313 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.8.2+dfsg-1 [24.2 kB] Get: 218 http://deb.debian.org/debian trixie/main amd64 libc6-dbg amd64 2.40-2 [6982 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.8.2+dfsg-1 [36.9 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.8.2+dfsg-1 [38.7 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.8.2+dfsg-1 [32.0 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.8.2+dfsg-1 [637 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-3.1+b2 [285 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.7-2 [123 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.63.0-1 [115 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1 [77.4 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.20.0-1+b1 [583 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.6-2 [439 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.6-2 [439 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-2 [208 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.19.0-3+b2 [98.0 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10-1 [1316 kB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.6-2 [1381 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b4 [67.7 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.3.2-1 [2742 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.0-7 [357 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [368 kB] Get: 240 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.9.1-2 [573 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.8.2+dfsg-1 [83.7 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-1+b3 [780 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-1+b3 [344 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-1+b3 [806 kB] Get: 245 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-1+b3 [64.1 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b1 [175 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.5-1 [656 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-2 [604 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libhypre-2.29.0 amd64 2.29.0-2+b1 [1648 kB] Get: 250 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.8.2+dfsg-1 [90.1 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.17 [2372 B] Get: 252 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1+b1 [1567 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libmumps-5.6t64 amd64 5.6.2-2.1+b2 [1895 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.8.2+dfsg-1 [146 kB] Get: 255 http://deb.debian.org/debian trixie/main amd64 libsuperlu6 amd64 6.0.1+dfsg1-1+b1 [170 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.5-1 [411 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-6 [107 kB] Get: 258 http://deb.debian.org/debian trixie/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-6 [1278 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-6 [441 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-6 [126 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-6 [452 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-6 [87.7 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-6 [119 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-6 [211 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-6 [94.2 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-6 [492 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-6 [386 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-6 [1009 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.8.2+dfsg-1 [274 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.20 amd64 3.20.6+dfsg1-3 [6917 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libparpack2t64 amd64 3.9.1-1.1+b2 [99.3 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.20 amd64 3.20.2+dfsg1-2 [1221 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real0.8 amd64 1:0.8.0-11 [634 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 libldl3 amd64 1:7.8.2+dfsg-1 [24.0 kB] Get: 277 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.2+dfsg-1 [46.6 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 librbio4 amd64 1:7.8.2+dfsg-1 [39.4 kB] Get: 279 http://deb.debian.org/debian trixie/main amd64 libspex3 amd64 1:7.8.2+dfsg-1 [59.2 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libparu0 amd64 1:7.8.2+dfsg-1 [63.9 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-dev amd64 1:7.8.2+dfsg-1 [1474 kB] Get: 282 http://deb.debian.org/debian trixie/main amd64 libscotch-dev amd64 7.0.5-1 [1574 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 libptscotch-dev amd64 7.0.5-1 [1375 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi-dev amd64 2.2.1-3.1+b1 [10.1 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 libscalapack-mpi-dev amd64 2.2.1-3.1+b1 [5220 B] Get: 286 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-1+b3 [607 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-1+b3 [52.4 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-1+b3 [2124 kB] Get: 289 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi-dev amd64 3.3.10-1+b3 [67.0 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 opencl-c-headers all 3.0~2024.05.08-1 [46.1 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 opencl-clhpp-headers all 3.0~2024.05.08-1 [49.8 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b1 [8676 B] Get: 293 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-4 [90.7 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-4 [40.7 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-4 [131 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-4 [21.4 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-4 [2717 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 libhdf5-mpi-dev amd64 1.10.10+repack-4 [15.6 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dev amd64 6.0.1+dfsg1-1+b1 [21.8 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-2 [910 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libyaml-dev amd64 0.2.5-1+b1 [63.2 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 libpetsc3.20-dev-common all 3.20.6+dfsg1-3 [298 kB] Get: 314 http://deb.debian.org/debian trixie/main amd64 libhypre-dev amd64 2.29.0-2+b1 [1901 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libmumps-headers-dev all 5.6.2-2.1 [34.7 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libmumps-dev amd64 5.6.2-2.1+b2 [1786 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 trilinos-dev amd64 13.2.0-6 [12.5 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 libtrilinos-aztecoo-dev amd64 13.2.0-6 [50.8 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 libtrilinos-trilinosss-dev amd64 13.2.0-6 [33.4 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ml-dev amd64 13.2.0-6 [117 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 libtrilinos-zoltan-dev amd64 13.2.0-6 [33.8 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB] Get: 323 http://deb.debian.org/debian trixie/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.20-dev amd64 3.20.6+dfsg1-3 [6650 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 libparpack2-dev amd64 3.9.1-1.1+b2 [110 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.20-dev amd64 3.20.2+dfsg1-2 [5674 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libdolfinx-real-dev amd64 1:0.8.0-11 [46.8 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libpugixml-dev amd64 1.14-2 [109 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.3+b3 [787 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.17.1-1 [87.1 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-7 [62.6 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 python3-pycparser all 2.22-2 [78.0 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 python3-cffi all 1.17.1-1 [89.3 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.6-1 [2147 kB] Get: 335 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.3-1 [157 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.6-1 [5127 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.5-1+b1 [10.1 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.6-1 [506 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.5-1+b1 [26.1 kB] Get: 342 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.4.0-1 [63.7 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-1 [42.2 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 348 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get: 351 http://deb.debian.org/debian trixie/main amd64 python3-ufl all 2024.1.0-1 [149 kB] Get: 352 http://deb.debian.org/debian trixie/main amd64 python3-basix amd64 0.8.0-8 [128 kB] Get: 353 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.1-1 [10.2 kB] Get: 354 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 355 http://deb.debian.org/debian trixie/main amd64 python3-ffcx all 1:0.8.0-1 [100 kB] Get: 356 http://deb.debian.org/debian trixie/main amd64 libdolfinx-dev amd64 1:0.8.0-11 [208 kB] Fetched 326 MB in 6s (52.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19737 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. 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Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up libboost-math1.83.0:amd64 (1.83.0-3.2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.15.0-1) ... Setting up valgrind (1:3.20.0-2.1) ... Setting up libgfortran-13-dev:amd64 (13.3.0-6) ... Setting up libtasn1-6-dev:amd64 (4.19.0-3+b2) ... Setting up libdrm-common (2.4.122-1) ... Setting up valgrind-mpi (1:3.20.0-2.1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:amd64 (72.1-5) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b4) ... Setting up libtrilinos-trilinosss-dev:amd64 (13.2.0-6) ... Setting up libp11-kit-dev:amd64 (0.25.5-2) ... 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Setting up libxau-dev:amd64 (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2) ... Setting up nettle-dev:amd64 (3.10-1) ... Setting up libyaml-dev:amd64 (0.2.5-1+b1) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-3.2) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:amd64 (1:7.8.2+dfsg-1) ... Setting up libspex3:amd64 (1:7.8.2+dfsg-1) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-1+b3) ... Setting up cpp-13-x86-64-linux-gnu (13.3.0-6) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.8.2+dfsg-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up gcc-13-x86-64-linux-gnu (13.3.0-6) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libpugixml-dev:amd64 (1.14-2) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libcxsparse4:amd64 (1:7.8.2+dfsg-1) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.2) ... Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1+b1) ... Setting up gfortran-13-x86-64-linux-gnu (13.3.0-6) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Setting up libcamd3:amd64 (1:7.8.2+dfsg-1) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-3) ... Setting up pkgconf:amd64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-7+b1) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3+b1) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.2) ... Setting up libllvm17t64:amd64 (1:17.0.6-18) ... Setting up librbio4:amd64 (1:7.8.2+dfsg-1) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2) ... Setting up opencl-clhpp-headers (3.0~2024.05.08-1) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.0-7) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b1) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libccolamd3:amd64 (1:7.8.2+dfsg-1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:amd64 (2.4.122-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3) ... Setting up groff-base (1.23.0-5) ... Setting up libbasix0.8:amd64 (0.8.0-8) ... Setting up libhwloc-dev:amd64 (2.11.0-2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up gfortran-14 (14.2.0-3) ... Setting up libsuperlu-dev:amd64 (6.0.1+dfsg1-1+b1) ... Setting up libbasix-dev:amd64 (0.8.0-8) ... Setting up libarchive13t64:amd64 (3.7.4-1) ... Setting up libfftw3-dev:amd64 (3.3.10-1+b3) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.122-1) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2) ... Setting up libgnutls28-dev:amd64 (3.8.6-2) ... Setting up libnghttp2-dev:amd64 (1.63.0-1) ... Setting up libibverbs1:amd64 (52.0-2) ... Setting up libcholmod5:amd64 (1:7.8.2+dfsg-1) ... Setting up libarpack2-dev:amd64 (3.9.1-1.1+b2) ... Setting up libxcb1-dev:amd64 (1.17.0-2) ... Setting up libzmq5:amd64 (4.3.5-1+b2) ... Setting up cpp-13 (13.3.0-6) ... Setting up libcurl4t64:amd64 (8.9.1-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up ibverbs-providers:amd64 (52.0-2) ... Setting up libspqr4:amd64 (1:7.8.2+dfsg-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2) ... Setting up openssh-client (1:9.8p1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libhwloc-plugins:amd64 (2.11.0-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2) ... Setting up gfortran (4:14.1.0-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libnl-route-3-dev:amd64 (3.7.0-0.3) ... Setting up libklu2:amd64 (1:7.8.2+dfsg-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libevent-dev (2.1.12-stable-10) ... Setting up gcc-13 (13.3.0-6) ... Setting up libpmix2t64:amd64 (5.0.3-2) ... Setting up libumfpack6:amd64 (1:7.8.2+dfsg-1) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up cmake (3.30.3-1) ... Setting up librdmacm1t64:amd64 (52.0-2) ... Setting up libpmix-dev:amd64 (5.0.3-2) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up libadios2-mpi-auxiliary-2:amd64 (2.9.2+dfsg1-13+b2) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libparu0:amd64 (1:7.8.2+dfsg-1) ... Setting up libibverbs-dev:amd64 (52.0-2) ... Setting up libpython3.12t64:amd64 (3.12.6-1) ... Setting up libadios2-mpi-auxiliary-dev:amd64 (2.9.2+dfsg1-13+b2) ... Setting up libcurl4-openssl-dev:amd64 (8.9.1-2) ... Setting up gfortran-13 (13.3.0-6) ... Setting up libhsa-runtime64-1:amd64 (5.7.1-3) ... Setting up libpython3-stdlib:amd64 (3.12.5-1+b1) ... Setting up libsuitesparse-dev:amd64 (1:7.8.2+dfsg-1) ... Setting up python3 (3.12.5-1+b1) ... /usr/share/petsc/3.20/lib/petsc/bin/petsc_tas_analysis.py:792: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', /usr/share/petsc/3.20/lib/petsc/bin/petsc_tas_analysis.py:793: SyntaxWarning: invalid escape sequence '\l' ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libpython3.12-dev:amd64 (3.12.6-1) ... Setting up python3-zipp (3.20.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up python3.12-dev (3.12.6-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-cffi-backend:amd64 (1.17.1-1) ... Setting up python3-more-itertools (10.4.0-1) ... Setting up libucx0:amd64 (1.17.0+ds-3) ... Setting up libpython3-dev:amd64 (3.12.5-1+b1) ... Setting up python3-jaraco.functools (4.0.2-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-ply (3.11-7) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-pycparser (2.22-2) ... Setting up python3-inflect (7.3.1-1) ... Setting up python3-dev (3.12.5-1+b1) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up libparpack2t64:amd64 (3.9.1-1.1+b2) ... Setting up libboost-mpi1.83.0 (1.83.0-3.2) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-pkg-resources (74.1.2-2) ... Setting up libptscotch-7.0:amd64 (7.0.5-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-cffi (1.17.1-1) ... Setting up mpi-default-bin (1.17) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-3.1+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-1+b3) ... Setting up libtrilinos-zoltan-13.2:amd64 (13.2.0-6) ... Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libtrilinos-teuchos-13.2:amd64 (13.2.0-6) ... Setting up libtrilinos-epetra-13.2:amd64 (13.2.0-6) ... Setting up libtrilinos-zoltan-dev:amd64 (13.2.0-6) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up libtrilinos-aztecoo-13.2:amd64 (13.2.0-6) ... Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-4) ... Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libtrilinos-aztecoo-dev:amd64 (13.2.0-6) ... Setting up libopenmpi-dev:amd64 (4.1.6-13.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libtrilinos-triutils-13.2:amd64 (13.2.0-6) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1+b1) ... Setting up libadios2-mpi-core-2:amd64 (2.9.2+dfsg1-13+b2) ... Setting up python3-ufl (2024.1.0-1) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-2) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-1+b3) ... Setting up libadios2-mpi-core-dev:amd64 (2.9.2+dfsg1-13+b2) ... Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-2) ... Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-4) ... Setting up libadios2-mpi-c++11-2:amd64 (2.9.2+dfsg1-13+b2) ... Setting up libmumps-5.6t64:amd64 (5.6.2-2.1+b2) ... Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-6) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-3.1+b1) ... Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-6) ... Setting up mpi-default-dev (1.17) ... Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-4) ... Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-6) ... Setting up libscalapack-mpi-dev:amd64 (2.2.1-3.1+b1) ... Setting up libhdf5-openmpi-dev (1.10.10+repack-4) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre-2.29.0:amd64 (2.29.0-2+b1) ... Setting up python3-basix (0.8.0-8) ... Setting up libmumps-dev:amd64 (5.6.2-2.1+b2) ... Setting up libscotch-dev (7.0.5-1) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.9.2+dfsg1-13+b2) ... Setting up libparpack2-dev:amd64 (3.9.1-1.1+b2) ... Setting up libhypre-dev:amd64 (2.29.0-2+b1) ... Setting up libptscotch-dev (7.0.5-1) ... Setting up python3-ffcx (1:0.8.0-1) ... Setting up libboost-mpi1.83-dev (1.83.0-3.2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-6) ... Setting up libhdf5-mpi-dev (1.10.10+repack-4) ... Setting up libtrilinos-ml-13.2:amd64 (13.2.0-6) ... Setting up libpetsc3.20-dev-common (3.20.6+dfsg1-3) ... Setting up libtrilinos-ml-dev:amd64 (13.2.0-6) ... Setting up libpetsc-real3.20:amd64 (3.20.6+dfsg1-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode Setting up libslepc-real3.20 (3.20.2+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode Setting up libdolfinx-real0.8:amd64 (1:0.8.0-11) ... Setting up libpetsc-real3.20-dev:amd64 (3.20.6+dfsg1-3) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode Setting up libslepc-real3.20-dev (3.20.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode Setting up libdolfinx-real-dev:amd64 (1:0.8.0-11) ... Setting up libdolfinx-dev:amd64 (1:0.8.0-11) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3791/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3791/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fenicsx-performance-tests-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.8.0-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") CMake Warning (dev) at /usr/share/cmake-3.30/Modules/CMakeFindDependencyMacro.cmake:76 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake:54 (find_dependency) CMakeLists.txt:16 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3 (found version "3.12.6") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX CMake Warning (dev) at CMakeLists.txt:52 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.83.0 -- [x] libboost_program_options.so.1.83.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: program_options -- -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -- Configuring done (4.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' [ 9%] Generating Poisson.c [ 18%] Generating Elasticity.c ffcx /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/Poisson.py ffcx /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/Elasticity.py cd /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenicsx-performance-tests-0.8.0/src /build/reproducible-path/fenicsx-performance-tests-0.8.0/src /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' [ 27%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 36%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/main.cpp [ 45%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 54%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o [ 63%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/elasticity_problem.cpp /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/src/poisson_problem.cpp [ 72%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu -I/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/cgpoisson_problem.cpp.o.d -o 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-ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/Poisson.c [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -Ofast -g -O2 -ffile-prefix-map=/build/reproducible-path/fenicsx-performance-tests-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wl,-z,relro "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" 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/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' debian/tests/run-dolfinx-scaling-test -p /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2025-10-20 01:49:49.228 ( 0.078s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2025-10-20 01:49:49.228 ( 0.078s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2025-10-20 01:49:49.228 ( 0.078s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:49:49.248 ( 0.098s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2025-10-20 01:49:49.248 ( 0.098s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:49.248 ( 0.099s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:49.248 ( 0.099s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2025-10-20 01:49:49.250 ( 0.100s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 66332, non-local: 962) 2025-10-20 01:49:49.250 ( 0.101s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2025-10-20 01:49:57.057 ( 7.907s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:49:57.057 ( 7.907s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:49:57.059 ( 7.909s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:49:57.078 ( 7.929s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(119) 16639-1193 2025-10-20 01:49:57.081 ( 7.931s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2025-10-20 01:49:57.081 ( 7.931s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2025-10-20 01:49:57.083 ( 7.934s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:49:57.083 ( 7.934s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:49:57.088 ( 7.938s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2025-10-20 01:49:57.088 ( 7.938s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2025-10-20 01:49:57.088 ( 7.939s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2025-10-20 01:49:57.090 ( 7.940s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:49:57.090 ( 7.940s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:49:57.095 ( 7.945s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.096 ( 7.946s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.096 ( 7.946s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.096 ( 7.946s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.097 ( 7.947s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:49:57.097 ( 7.947s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:49:57.097 ( 7.947s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2025-10-20 01:49:57.097 ( 7.948s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.097 ( 7.948s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.098 ( 7.948s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2025-10-20 01:49:57.098 ( 7.948s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:49:57.098 ( 7.948s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17142x4 2025-10-20 01:49:57.101 ( 7.951s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:49:57.101 ( 7.951s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:49:57.101 ( 7.951s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:49:57.101 ( 7.952s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.101 ( 7.952s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.103 ( 7.953s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 UnitCube (24x19x19) to be refined 0 times 2025-10-20 01:49:57.109 ( 7.959s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.109 ( 7.959s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.156 ( 8.007s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.156 ( 8.007s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.157 ( 8.007s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2025-10-20 01:49:57.157 ( 8.007s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2025-10-20 01:49:57.158 ( 8.008s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:49:57.158 ( 8.008s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17142x4 2025-10-20 01:49:57.159 ( 8.010s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:49:57.160 ( 8.010s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:49:57.160 ( 8.010s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:49:57.160 ( 8.010s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:57.160 ( 8.010s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:57.160 ( 8.010s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:49:57.160 ( 8.011s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:49:57.160 ( 8.011s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2025-10-20 01:49:57.173 ( 8.023s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 207 to 542 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-11 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2025-10-20 01:49:57.260 ( 8.111s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 MIS-k aggressive coarsening MIS-2 coarsening on aggressive levels Number smoothing steps 1 Complexity: grid = 1.0688 operator = 1.26585 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.03817 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 package used to perform factorization: petsc total: nonzeros=45036, allocated nonzeros=45036 using I-node routines: found 58 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=222, cols=222, bs=6 total: nonzeros=43380, allocated nonzeros=43380 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=222, cols=222, bs=6 total: nonzeros=43380, allocated nonzeros=43380 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.331512, max 3.64663 eigenvalues provided (min 2.48711e-06, max 3.31512) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1842, cols=1842, bs=6 total: nonzeros=289332, allocated nonzeros=289332 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 184 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.258067, max 2.83874 eigenvalues provided (min 0.0759236, max 2.58067) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3368 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3368 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 7.880000 7.880000 Build dofmap data | 2 0.010000 0.020000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.050000 0.050000 Compute graph partition (SCOTCH) | 1 7.800000 7.800000 Compute local part of mesh dual graph | 2 0.015000 0.030000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.010000 0.010000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.005000 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.070000 0.070000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.010000 0.020000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.380000 0.380000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 7.800000 7.800000 SparsityPattern::finalize | 1 0.000000 0.000000 Topology: create | 1 0.020000 0.020000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.080000 0.080000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 7.880000 7.880000 ZZZ Create RHS function | 1 0.000000 0.000000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.050000 0.050000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.010000 0.010000 ZZZ FunctionSpace | 1 0.010000 0.010000 ZZZ Solve | 1 0.380000 0.380000 *** Number of Krylov iterations: 23 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon Oct 20 01:49:57 2025 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 8.417e+00 1.000 8.417e+00 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.313e+08 1.085 2.194e+08 6.581e+08 Flops/sec: 2.748e+07 1.085 2.606e+07 7.818e+07 MPI Msg Count: 9.190e+02 1.039 8.960e+02 2.688e+03 MPI Msg Len (bytes): 6.676e+06 1.416 6.464e+03 1.738e+07 MPI Reductions: 5.440e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 8.4171e+00 100.0% 6.5809e+08 100.0% 2.688e+03 100.0% 6.464e+03 100.0% 5.260e+02 96.7% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 121 1.0 3.2441e-02 7.9 0.00e+00 0.0 2.2e+02 4.0e+00 1.2e+02 0 0 8 0 22 0 0 8 0 23 0 BuildTwoSidedF 86 1.0 3.2304e-02 8.2 0.00e+00 0.0 1.2e+02 3.5e+04 8.6e+01 0 0 4 24 16 0 0 4 24 16 0 MatMult 235 1.0 5.7262e-02 1.0 1.33e+08 1.1 1.4e+03 5.5e+03 0.0e+00 1 58 52 45 0 1 58 52 45 0 6639 MatMultAdd 48 1.0 4.9637e-03 1.1 1.11e+07 1.1 1.9e+02 1.3e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 6408 MatMultTranspose 48 1.0 7.1216e-03 1.1 1.11e+07 1.1 1.9e+02 1.3e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 4471 MatSolve 24 0.0 8.5284e-04 0.0 2.16e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2528 MatLUFactorSym 1 1.0 2.2323e-03 292.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.2914e-03 1440.2 5.39e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2354 MatConvert 1 1.0 1.4402e-04 1.0 0.00e+00 0.0 1.2e+01 7.2e+02 1.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatScale 4 1.0 3.4703e-04 1.0 4.62e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3819 MatResidual 48 1.0 1.1141e-02 1.0 2.61e+07 1.1 2.9e+02 5.2e+03 0.0e+00 0 11 11 9 0 0 11 11 9 0 6639 MatAssemblyBegin 59 1.0 4.0673e-02 2.5 0.00e+00 0.0 1.2e+02 3.5e+04 3.0e+01 0 0 4 24 6 0 0 4 24 6 0 MatAssemblyEnd 59 1.0 1.9570e-02 1.0 9.16e+04 2.0 2.1e+02 3.8e+02 1.2e+02 0 0 8 0 22 0 0 8 0 23 10 MatGetRowIJ 1 0.0 2.5847e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 3.3116e-03 1.0 0.00e+00 0.0 1.4e+01 2.6e+04 3.0e+01 0 0 1 2 6 0 0 1 2 6 0 MatGetOrdering 1 0.0 7.8802e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 7.5252e-03 1.0 1.37e+05 1.0 2.8e+02 6.4e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 54 MatZeroEntries 3 1.0 4.5624e-04 5.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 8.3476e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 5.9519e-03 1.0 1.14e+05 1.0 2.4e+01 4.0e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 57 MatTranspose 10 1.0 6.7362e-03 1.2 0.00e+00 0.0 1.3e+02 1.6e+03 3.6e+01 0 0 5 1 7 0 0 5 1 7 0 MatMatMultSym 9 1.0 3.2950e-02 1.1 0.00e+00 0.0 7.5e+01 8.0e+03 3.0e+01 0 0 3 3 6 0 0 3 3 6 0 MatMatMultNum 3 1.0 6.6961e-03 1.0 6.54e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 1 0 3 1 2 1 2764 MatPtAPSymbolic 3 1.0 1.2786e-01 1.0 0.00e+00 0.0 9.9e+01 3.3e+04 2.1e+01 2 0 4 19 4 2 0 4 19 4 0 MatPtAPNumeric 3 1.0 1.1347e-01 1.0 5.52e+07 1.3 6.6e+01 3.9e+04 1.8e+01 1 22 2 15 3 1 22 2 15 3 1289 MatGetLocalMat 9 1.0 2.5400e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.3503e-03 1.1 0.00e+00 0.0 1.1e+02 3.1e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecMDot 20 1.0 5.5633e-04 1.8 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 6295 VecTDot 48 1.0 9.7898e-04 1.4 9.70e+05 1.0 0.0e+00 0.0e+00 4.8e+01 0 0 0 0 9 0 0 0 0 9 2942 VecNorm 46 1.0 8.5988e-04 1.5 7.19e+05 1.0 0.0e+00 0.0e+00 4.6e+01 0 0 0 0 8 0 0 0 0 9 2489 VecScale 22 1.0 7.0202e-05 1.4 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4989 VecCopy 148 1.0 4.4789e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 169 1.0 1.8425e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 48 1.0 3.2811e-04 1.1 9.51e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 8606 VecAYPX 310 1.0 1.3910e-03 1.0 2.50e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 5344 VecAXPBYCZ 96 1.0 6.0124e-04 1.0 2.57e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12711 VecMAXPY 22 1.0 3.3056e-04 1.1 1.39e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12523 VecAssemblyBegin 57 1.0 7.3328e-04 3.6 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 10 0 0 0 0 11 0 VecAssemblyEnd 57 1.0 2.9430e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 214 1.0 1.1422e-03 1.1 1.15e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2983 VecScatterBegin 388 1.0 1.3318e-03 1.0 0.00e+00 0.0 2.0e+03 4.3e+03 0.0e+00 0 0 73 49 0 0 0 73 49 0 0 VecScatterEnd 388 1.0 1.0647e-02 3.0 1.37e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3 VecNormalize 22 1.0 3.2187e-04 1.1 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 4 0 0 0 0 4 3264 SFSetGraph 35 1.0 1.1210e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 35 1.0 7.0121e-04 1.0 0.00e+00 0.0 3.2e+02 3.7e+02 3.5e+01 0 0 12 1 6 0 0 12 1 7 0 SFBcastBegin 14 1.0 3.3817e-05 1.0 0.00e+00 0.0 8.4e+01 6.7e+02 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 14 1.0 3.4187e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 5.2112e-05 1.0 0.00e+00 0.0 1.8e+01 5.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 1.1220e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 406 1.0 5.9207e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 406 1.0 8.6160e-05 1.1 1.37e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 369 KSPSetUp 7 1.0 1.3877e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 7.5947e-02 1.0 1.53e+08 1.1 1.7e+03 4.6e+03 9.6e+01 1 68 62 44 18 1 68 62 44 18 5874 KSPGMRESOrthog 20 1.0 8.5336e-04 1.4 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 8209 PCSetUp_GAMG+ 1 1.0 3.0249e-01 1.0 7.62e+07 1.2 9.5e+02 8.9e+03 3.8e+02 4 31 35 49 70 4 31 35 49 72 681 PCGAMGCreateG 2 1.0 1.2613e-02 1.0 5.00e+04 1.0 1.3e+02 1.5e+03 5.0e+01 0 0 5 1 9 0 0 5 1 10 12 GAMG Coarsen 2 1.0 7.9445e-03 1.0 1.37e+05 1.0 2.8e+02 6.4e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 51 GAMG MIS/Agg 2 1.0 7.5405e-03 1.0 1.37e+05 1.0 2.8e+02 6.4e+02 1.0e+02 0 0 11 1 19 0 0 11 1 20 54 PCGAMGProl 2 1.0 7.4897e-03 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 7.6e+01 0 0 7 2 14 0 0 7 2 14 0 GAMG Prol-col 2 1.0 2.8832e-03 1.0 0.00e+00 0.0 1.7e+02 7.1e+02 5.6e+01 0 0 6 1 10 0 0 6 1 11 0 GAMG Prol-lift 2 1.0 4.4656e-03 1.0 0.00e+00 0.0 2.4e+01 9.5e+03 1.2e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 3.3603e-02 1.0 2.09e+07 1.1 1.9e+02 8.3e+03 6.6e+01 0 9 7 9 12 0 9 7 9 13 1774 GAMG smooth 2 1.0 2.5685e-02 1.0 7.06e+06 1.1 7.2e+01 1.4e+04 2.4e+01 0 3 3 6 4 0 3 3 6 5 779 PCGAMGCreateL 2 1.0 2.4023e-01 1.0 5.51e+07 1.3 1.5e+02 4.1e+04 8.1e+01 3 22 6 35 15 3 22 6 35 15 607 GAMG PtAP 2 1.0 2.3644e-01 1.0 5.51e+07 1.3 1.2e+02 4.8e+04 2.6e+01 3 22 4 33 5 3 22 4 33 5 617 GAMG Reduce 1 1.0 3.8123e-03 1.0 0.00e+00 0.0 2.9e+01 1.3e+04 5.5e+01 0 0 1 2 10 0 0 1 2 10 0 PCGAMG Gal l00 1 1.0 1.5795e-01 1.0 3.55e+07 1.1 6.0e+01 6.5e+04 1.3e+01 2 16 2 23 2 2 16 2 23 2 651 PCGAMG Opt l00 1 1.0 1.8561e-02 1.0 5.02e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 1 5 2 0 2 1 5 2 809 PCGAMG Gal l01 1 1.0 7.8534e-02 1.0 1.95e+07 2.0 6.0e+01 3.0e+04 1.3e+01 1 7 2 11 2 1 7 2 11 2 548 PCGAMG Opt l01 1 1.0 4.0111e-03 1.0 1.51e+06 1.7 3.6e+01 4.8e+03 1.1e+01 0 1 1 1 2 0 1 1 1 2 866 PCSetUp 2 1.0 3.0709e-01 1.0 7.62e+07 1.1 9.5e+02 8.9e+03 3.8e+02 4 32 35 49 70 4 32 35 49 72 688 PCSetUpOnBlocks 24 1.0 4.6838e-03 43.4 5.39e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1152 PCApply 24 1.0 6.6236e-02 1.0 1.31e+08 1.1 1.5e+03 4.2e+03 2.4e+01 1 58 57 37 4 1 58 57 37 5 5749 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 108 108 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 4.18e-08 Average time for MPI_Barrier(): 2.345e-06 Average time for zero size MPI_Send(): 9.43e-07 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-08-22 21:13:53 on reproducible Machine characteristics: Linux-6.1.0-23-amd64-x86_64-with-glibc2.39 Using PETSc directory: /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: weak source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line 2025-10-20 01:49:57.698 ( 8.548s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2025-10-20 01:49:58.180 ( 0.081s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2025-10-20 01:49:58.180 ( 0.081s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2025-10-20 01:49:58.180 ( 0.081s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:49:58.201 ( 0.103s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2025-10-20 01:49:58.201 ( 0.103s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:49:58.201 ( 0.103s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:49:58.201 ( 0.103s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2025-10-20 01:49:58.203 ( 0.105s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 66332, non-local: 962) 2025-10-20 01:49:58.204 ( 0.105s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2025-10-20 01:50:05.969 ( 7.870s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:50:05.969 ( 7.870s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:50:05.971 ( 7.872s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:50:05.991 ( 7.892s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(118) 1205-16941 2025-10-20 01:50:05.993 ( 7.895s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2025-10-20 01:50:05.993 ( 7.895s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2025-10-20 01:50:05.995 ( 7.896s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:50:05.995 ( 7.896s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:50:05.999 ( 7.901s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2025-10-20 01:50:05.999 ( 7.901s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2025-10-20 01:50:06.000 ( 7.901s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2025-10-20 01:50:06.001 ( 7.903s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:50:06.001 ( 7.903s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:50:06.006 ( 7.908s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.007 ( 7.908s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:06.007 ( 7.908s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.007 ( 7.908s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:06.008 ( 7.910s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:50:06.008 ( 7.910s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:50:06.008 ( 7.910s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2025-10-20 01:50:06.009 ( 7.910s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.009 ( 7.910s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:06.009 ( 7.910s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2025-10-20 01:50:06.009 ( 7.911s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:50:06.009 ( 7.911s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17351x4 2025-10-20 01:50:06.012 ( 7.913s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:50:06.012 ( 7.913s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:50:06.012 ( 7.913s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:50:06.012 ( 7.914s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.012 ( 7.914s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (24x19x19) to be refined 0 times 2025-10-20 01:50:06.013 ( 7.915s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2025-10-20 01:50:06.018 ( 7.919s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.018 ( 7.919s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:06.066 ( 7.967s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.066 ( 7.967s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:06.066 ( 7.968s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2025-10-20 01:50:06.066 ( 7.968s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2025-10-20 01:50:06.067 ( 7.969s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:50:06.067 ( 7.969s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:17351x4 2025-10-20 01:50:06.069 ( 7.970s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:50:06.069 ( 7.971s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:50:06.069 ( 7.971s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:50:06.069 ( 7.971s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:06.069 ( 7.971s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:06.070 ( 7.971s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:50:06.070 ( 7.972s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:50:06.070 ( 7.972s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2025-10-20 01:50:06.081 ( 7.983s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 198 to 537 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-11 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2025-10-20 01:50:06.167 ( 8.069s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels of aggressive coarsening 1 MIS-k aggressive coarsening MIS-2 coarsening on aggressive levels Number smoothing steps 1 Complexity: grid = 1.0698 operator = 1.26915 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.08277 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=210, cols=210, bs=6 package used to perform factorization: petsc total: nonzeros=40500, allocated nonzeros=40500 using I-node routines: found 57 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=210, cols=210, bs=6 total: nonzeros=37404, allocated nonzeros=37404 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 68 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=210, cols=210, bs=6 total: nonzeros=37404, allocated nonzeros=37404 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 68 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.310866, max 3.41953 eigenvalues provided (min 1.55102e-06, max 3.10866) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1884, cols=1884, bs=6 total: nonzeros=299448, allocated nonzeros=299448 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 188 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev Chebyshev polynomial of first kind eigenvalue targets used: min 0.257672, max 2.83439 eigenvalues provided (min 0.0661301, max 2.57672) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3389 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3389 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 7.840000 7.840000 Build dofmap data | 2 0.000000 0.000000 Build sparsity | 1 0.000000 0.000000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.050000 0.050000 Compute graph partition (SCOTCH) | 1 7.770000 7.770000 Compute local part of mesh dual graph | 2 0.020000 0.040000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.010000 0.010000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.010000 0.010000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 3 0.000000 0.000000 Gibbs-Poole-Stockmeyer ordering | 1 0.000000 0.000000 Init MPI | 1 0.080000 0.080000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.380000 0.380000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 7.770000 7.770000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.030000 0.030000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.000000 0.000000 ZZZ Assemble matrix | 1 0.070000 0.070000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 7.840000 7.840000 ZZZ Create RHS function | 1 0.000000 0.000000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.050000 0.050000 ZZZ Create forms | 1 0.000000 0.000000 ZZZ Create near-nullspace | 1 0.000000 0.000000 ZZZ FunctionSpace | 1 0.010000 0.010000 ZZZ Solve | 1 0.390000 0.390000 *** Number of Krylov iterations: 24 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon Oct 20 01:50:06 2025 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 8.378e+00 1.000 8.378e+00 Objects: 0.000e+00 0.000 0.000e+00 Flops: 2.411e+08 1.135 2.263e+08 6.788e+08 Flops/sec: 2.878e+07 1.135 2.701e+07 8.102e+07 MPI Msg Count: 9.410e+02 1.042 9.167e+02 2.750e+03 MPI Msg Len (bytes): 6.787e+06 1.363 6.364e+03 1.750e+07 MPI Reductions: 5.480e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 8.3777e+00 100.0% 6.7877e+08 100.0% 2.750e+03 100.0% 6.364e+03 100.0% 5.300e+02 96.7% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 121 1.0 3.3180e-02 16.2 0.00e+00 0.0 2.2e+02 4.0e+00 1.2e+02 0 0 8 0 22 0 0 8 0 23 0 BuildTwoSidedF 86 1.0 3.3069e-02 13.7 0.00e+00 0.0 1.1e+02 3.6e+04 8.6e+01 0 0 4 23 16 0 0 4 23 16 0 MatMult 244 1.0 6.2112e-02 1.0 1.40e+08 1.1 1.5e+03 5.4e+03 0.0e+00 1 58 53 46 0 1 58 53 46 0 6393 MatMultAdd 50 1.0 5.7575e-03 1.1 1.18e+07 1.1 2.0e+02 1.4e+03 0.0e+00 0 5 7 2 0 0 5 7 2 0 5807 MatMultTranspose 50 1.0 7.8790e-03 1.0 1.18e+07 1.1 2.0e+02 1.4e+03 0.0e+00 0 5 7 2 0 0 5 7 2 0 4248 MatSolve 25 0.0 1.0274e-03 0.0 2.02e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1966 MatLUFactorSym 1 1.0 1.6714e-03 176.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 2.0419e-03 1499.2 4.69e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2299 MatConvert 1 1.0 1.4270e-04 1.0 0.00e+00 0.0 1.2e+01 6.9e+02 1.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatScale 4 1.0 3.2757e-04 1.0 4.72e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4083 MatResidual 50 1.0 1.1580e-02 1.0 2.76e+07 1.1 3.0e+02 5.1e+03 0.0e+00 0 11 11 9 0 0 11 11 9 0 6697 MatAssemblyBegin 59 1.0 4.1868e-02 3.1 0.00e+00 0.0 1.1e+02 3.6e+04 3.0e+01 0 0 4 23 5 0 0 4 23 6 0 MatAssemblyEnd 59 1.0 2.0191e-02 1.0 9.59e+04 2.2 2.1e+02 3.8e+02 1.2e+02 0 0 8 0 22 0 0 8 0 23 10 MatGetRowIJ 1 0.0 4.5554e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 3.1137e-03 1.0 0.00e+00 0.0 1.4e+01 2.5e+04 3.0e+01 0 0 1 2 5 0 0 1 2 6 0 MatGetOrdering 1 0.0 1.0352e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 7.5578e-03 1.0 1.37e+05 1.0 2.8e+02 6.2e+02 1.0e+02 0 0 10 1 19 0 0 10 1 20 54 MatZeroEntries 3 1.0 3.1906e-04 2.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.1486e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 5.3556e-03 1.0 1.15e+05 1.0 2.4e+01 3.9e+02 1.4e+01 0 0 1 0 3 0 0 1 0 3 63 MatTranspose 10 1.0 5.9805e-03 1.1 0.00e+00 0.0 1.3e+02 1.6e+03 3.6e+01 0 0 5 1 7 0 0 5 1 7 0 MatMatMultSym 9 1.0 3.2275e-02 1.1 0.00e+00 0.0 7.5e+01 7.9e+03 3.0e+01 0 0 3 3 5 0 0 3 3 6 0 MatMatMultNum 3 1.0 6.3448e-03 1.0 6.64e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 1 0 3 1 2 1 2937 MatPtAPSymbolic 3 1.0 1.2598e-01 1.0 0.00e+00 0.0 9.9e+01 3.3e+04 2.1e+01 1 0 4 19 4 1 0 4 19 4 0 MatPtAPNumeric 3 1.0 1.1602e-01 1.0 5.62e+07 1.3 6.6e+01 3.9e+04 1.8e+01 1 22 2 15 3 1 22 2 15 3 1261 MatGetLocalMat 9 1.0 2.3916e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.1986e-03 1.0 0.00e+00 0.0 1.1e+02 3.1e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecMDot 20 1.0 4.8700e-04 1.7 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 7201 VecTDot 50 1.0 9.4076e-04 1.3 1.02e+06 1.0 0.0e+00 0.0e+00 5.0e+01 0 0 0 0 9 0 0 0 0 9 3189 VecNorm 47 1.0 7.7555e-04 1.3 7.44e+05 1.0 0.0e+00 0.0e+00 4.7e+01 0 0 0 0 9 0 0 0 0 9 2838 VecScale 22 1.0 6.0521e-05 1.3 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 5795 VecCopy 154 1.0 4.3139e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 176 1.0 1.9395e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 50 1.0 5.1419e-04 1.1 9.97e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 5725 VecAYPX 323 1.0 1.6189e-03 1.0 2.61e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 4791 VecAXPBYCZ 100 1.0 6.3405e-04 1.0 2.68e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 12572 VecMAXPY 22 1.0 3.0553e-04 1.1 1.40e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 13566 VecAssemblyBegin 57 1.0 3.4011e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 10 0 0 0 0 11 0 VecAssemblyEnd 57 1.0 3.4765e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 222 1.0 1.3702e-03 1.1 1.19e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2583 VecScatterBegin 401 1.0 1.3511e-03 1.1 0.00e+00 0.0 2.0e+03 4.3e+03 0.0e+00 0 0 74 49 0 0 0 74 49 0 0 VecScatterEnd 401 1.0 9.1591e-03 1.9 1.46e+04 2.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4 VecNormalize 22 1.0 3.0611e-04 1.1 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 4 0 0 0 0 4 3437 SFSetGraph 35 1.0 1.1084e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 35 1.0 7.1409e-04 1.1 0.00e+00 0.0 3.2e+02 3.7e+02 3.5e+01 0 0 12 1 6 0 0 12 1 7 0 SFBcastBegin 14 1.0 3.9317e-05 1.2 0.00e+00 0.0 8.4e+01 6.5e+02 0.0e+00 0 0 3 0 0 0 0 3 0 0 0 SFBcastEnd 14 1.0 4.1663e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 5.5353e-05 1.0 0.00e+00 0.0 1.8e+01 5.3e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 1.0950e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 419 1.0 5.6167e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 419 1.0 1.1476e-04 1.4 1.46e+04 2.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 301 KSPSetUp 7 1.0 1.8791e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 8.2587e-02 1.0 1.62e+08 1.1 1.7e+03 4.5e+03 1.0e+02 1 69 63 45 18 1 69 63 45 19 5646 KSPGMRESOrthog 20 1.0 7.5730e-04 1.3 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 4 0 1 0 0 4 9262 PCSetUp_GAMG+ 1 1.0 3.0137e-01 1.0 7.74e+07 1.2 9.5e+02 8.9e+03 3.8e+02 4 30 35 48 69 4 30 35 48 72 685 PCGAMGCreateG 2 1.0 1.2139e-02 1.0 5.03e+04 1.0 1.3e+02 1.5e+03 5.0e+01 0 0 5 1 9 0 0 5 1 9 12 GAMG Coarsen 2 1.0 7.9630e-03 1.0 1.37e+05 1.0 2.8e+02 6.2e+02 1.0e+02 0 0 10 1 19 0 0 10 1 20 51 GAMG MIS/Agg 2 1.0 7.5708e-03 1.0 1.37e+05 1.0 2.8e+02 6.2e+02 1.0e+02 0 0 10 1 19 0 0 10 1 20 54 PCGAMGProl 2 1.0 7.5377e-03 1.0 0.00e+00 0.0 1.9e+02 1.7e+03 7.6e+01 0 0 7 2 14 0 0 7 2 14 0 GAMG Prol-col 2 1.0 2.5011e-03 1.0 0.00e+00 0.0 1.7e+02 6.6e+02 5.6e+01 0 0 6 1 10 0 0 6 1 11 0 GAMG Prol-lift 2 1.0 4.8574e-03 1.0 0.00e+00 0.0 2.4e+01 8.9e+03 1.2e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 3.2400e-02 1.0 2.12e+07 1.1 1.9e+02 8.2e+03 6.6e+01 0 9 7 9 12 0 9 7 9 12 1851 GAMG smooth 2 1.0 2.4824e-02 1.0 7.17e+06 1.1 7.2e+01 1.3e+04 2.4e+01 0 3 3 5 4 0 3 3 5 5 811 PCGAMGCreateL 2 1.0 2.4067e-01 1.0 5.60e+07 1.3 1.5e+02 4.1e+04 8.1e+01 3 22 5 35 15 3 22 5 35 15 607 GAMG PtAP 2 1.0 2.3718e-01 1.0 5.60e+07 1.3 1.2e+02 4.8e+04 2.6e+01 3 22 4 33 5 3 22 4 33 5 615 GAMG Reduce 1 1.0 3.5182e-03 1.0 0.00e+00 0.0 2.9e+01 1.3e+04 5.5e+01 0 0 1 2 10 0 0 1 2 10 0 PCGAMG Gal l00 1 1.0 1.6331e-01 1.0 3.69e+07 1.1 6.0e+01 7.0e+04 1.3e+01 2 15 2 24 2 2 15 2 24 2 643 PCGAMG Opt l00 1 1.0 1.7557e-02 1.0 5.05e+06 1.0 3.6e+01 2.2e+04 1.1e+01 0 2 1 4 2 0 2 1 4 2 855 PCGAMG Gal l01 1 1.0 7.3874e-02 1.0 1.91e+07 1.8 6.0e+01 2.6e+04 1.3e+01 1 6 2 9 2 1 6 2 9 2 555 PCGAMG Opt l01 1 1.0 4.1900e-03 1.0 1.60e+06 1.6 3.6e+01 5.2e+03 1.1e+01 0 1 1 1 2 0 1 1 1 2 858 PCSetUp 2 1.0 3.0526e-01 1.0 7.74e+07 1.2 9.5e+02 8.9e+03 3.8e+02 4 31 35 48 69 4 31 35 48 72 692 PCSetUpOnBlocks 25 1.0 3.9069e-03 31.8 4.69e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1202 PCApply 25 1.0 7.2329e-02 1.0 1.39e+08 1.1 1.6e+03 4.2e+03 2.5e+01 1 59 58 38 5 1 59 58 38 5 5505 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 108 108 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 2 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 ======================================================================================================================== Average time to get PetscTime(): 4.26e-08 Average time for MPI_Barrier(): 1.5296e-06 Average time for zero size MPI_Send(): 7.70667e-07 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-08-22 21:13:53 on reproducible Machine characteristics: Linux-6.1.0-23-amd64-x86_64-with-glibc2.39 Using PETSc directory: /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type elasticity # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -matptap_via scalable # (source: command line) -mg_levels_esteig_ksp_type cg # (source: command line) -mg_levels_ksp_type chebyshev # (source: command line) -mg_levels_pc_type jacobi # (source: command line) -options_left # (source: command line) -pc_gamg_coarse_eq_limit 1000 # (source: command line) -pc_type gamg # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: elasticity source: command line Option left: name:--scaling_type value: strong source: command line Option left: name:-mg_levels_esteig_ksp_type value: cg source: command line 2025-10-20 01:50:06.736 ( 8.638s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2025-10-20 01:50:07.282 ( 0.101s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2025-10-20 01:50:07.282 ( 0.101s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2025-10-20 01:50:07.282 ( 0.101s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:50:07.326 ( 0.144s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2025-10-20 01:50:07.349 ( 0.168s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:07.349 ( 0.168s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:07.349 ( 0.168s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2025-10-20 01:50:07.353 ( 0.172s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 210000, non-local: 1800) 2025-10-20 01:50:07.353 ( 0.172s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2025-10-20 01:50:20.883 ( 13.702s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:50:20.883 ( 13.702s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:50:20.891 ( 13.710s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:50:20.941 ( 13.760s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(154) 51450-1562 2025-10-20 01:50:20.948 ( 13.766s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2025-10-20 01:50:20.948 ( 13.766s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2025-10-20 01:50:20.953 ( 13.772s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:50:20.953 ( 13.772s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:50:20.965 ( 13.784s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2025-10-20 01:50:20.965 ( 13.784s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2025-10-20 01:50:20.966 ( 13.785s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2025-10-20 01:50:20.970 ( 13.788s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:50:20.970 ( 13.788s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:50:20.983 ( 13.802s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:20.984 ( 13.803s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:20.985 ( 13.803s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:20.985 ( 13.803s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:20.990 ( 13.809s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:50:20.991 ( 13.809s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:50:20.991 ( 13.809s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2025-10-20 01:50:20.991 ( 13.810s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:20.991 ( 13.810s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:20.991 ( 13.810s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2025-10-20 01:50:20.992 ( 13.810s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:50:20.992 ( 13.811s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53236x4 2025-10-20 01:50:20.996 ( 13.815s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:50:20.996 ( 13.815s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:50:20.997 ( 13.816s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:50:20.997 ( 13.816s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:20.997 ( 13.816s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times 2025-10-20 01:50:21.000 ( 13.819s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2025-10-20 01:50:21.013 ( 13.831s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:21.013 ( 13.832s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:21.105 ( 13.924s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:21.105 ( 13.924s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:21.107 ( 13.926s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2025-10-20 01:50:21.107 ( 13.926s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2025-10-20 01:50:21.109 ( 13.927s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:50:21.109 ( 13.928s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53236x4 2025-10-20 01:50:21.113 ( 13.932s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:50:21.114 ( 13.932s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:50:21.114 ( 13.933s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:50:21.114 ( 13.933s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:21.114 ( 13.933s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:21.115 ( 13.934s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:50:21.115 ( 13.934s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:50:21.115 ( 13.934s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2025-10-20 01:50:21.134 ( 13.953s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2025-10-20 01:50:21.134 ( 13.953s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (2,0) 2025-10-20 01:50:21.153 ( 13.972s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 489 to 1285 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-11 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2025-10-20 01:50:21.199 ( 14.018s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 13.730000 13.730000 Build dofmap data | 2 0.000000 0.000000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.110000 0.110000 Compute graph partition (SCOTCH) | 1 13.530000 13.530000 Compute local part of mesh dual graph | 2 0.055000 0.110000 Compute local-to-local map | 1 0.010000 0.010000 Compute non-local part of mesh dual graph | 1 0.030000 0.030000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.020000 0.020000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 6 0.001667 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.090000 0.090000 Init PETSc | 1 0.000000 0.000000 Init dofmap from element dofmap | 2 0.000000 0.000000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.170000 0.170000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 13.530000 13.530000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.050000 0.050000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.080000 0.080000 ZZZ Assemble matrix | 1 0.040000 0.040000 ZZZ Assemble vector | 1 0.000000 0.000000 ZZZ Create Mesh | 1 13.730000 13.730000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.110000 0.110000 ZZZ FunctionSpace | 1 0.000000 0.000000 ZZZ Solve | 1 0.180000 0.180000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon Oct 20 01:50:21 2025 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 1.410e+01 1.000 1.410e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.566e+06 1.037 3.488e+06 1.047e+07 Flops/sec: 2.529e+05 1.037 2.474e+05 7.422e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.896e+05 1.186 5.958e+03 5.362e+05 MPI Reductions: 7.000e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.4101e+01 100.0% 1.0465e+07 100.0% 9.000e+01 100.0% 5.958e+03 100.0% 5.200e+01 74.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 1.5267e-03 27.6 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 10 0 BuildTwoSidedF 2 1.0 1.5187e-03 33.7 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.9324e-03 1.0 1.95e+06 1.0 4.2e+01 5.7e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 2965 MatConvert 1 1.0 6.9115e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 2.9946e-03 1.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 2.9601e-03 1.0 3.81e+03 1.3 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 10 4 MatGetRowIJ 4 1.0 5.0120e-06 4.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 3.7784e-04 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 3.9910e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.6394e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 2.5003e-04 1.2 3.24e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 23 0 9 0 0 31 3813 VecNorm 8 1.0 1.6206e-04 1.1 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 2941 VecCopy 2 1.0 4.9654e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 6.1502e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.4770e-04 1.1 2.84e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5648 VecAYPX 6 1.0 9.9292e-05 1.1 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 3600 VecScatterBegin 7 1.0 1.2647e-04 1.0 0.00e+00 0.0 4.2e+01 5.7e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 3.6116e-04 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.1882e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.2510e-04 1.1 0.00e+00 0.0 3.6e+01 8.3e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 2.9785e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.8580e-06 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 6.0429e-05 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 5.5006e-02 1.0 2.84e+06 1.0 4.2e+01 5.7e+03 2.4e+01 0 80 47 45 34 0 80 47 45 46 152 PCSetUp 1 1.0 1.2279e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 5.2248e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 5.17e-08 Average time for MPI_Barrier(): 1.5086e-06 Average time for zero size MPI_Send(): 2.11867e-06 #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-08-22 21:13:53 on reproducible Machine characteristics: Linux-6.1.0-23-amd64-x86_64-with-glibc2.39 Using PETSc directory: /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type weak # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: weak source: command line 2025-10-20 01:50:21.430 ( 14.249s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2025-10-20 01:50:21.954 ( 0.086s) [RANK: 0 ] utils.cpp:94 INFO| Compute partition of cells across ranks 2025-10-20 01:50:21.955 ( 0.086s) [RANK: 0 ] graphbuild.cpp:491 INFO| Building mesh dual graph 2025-10-20 01:50:21.955 ( 0.086s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:50:22.019 ( 0.150s) [RANK: 0 ] graphbuild.cpp:51 INFO| Build nonlocal part of mesh dual graph 2025-10-20 01:50:22.019 ( 0.151s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:22.019 ( 0.151s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:22.019 ( 0.151s) [RANK: 0 ] graphbuild.cpp:165 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2025-10-20 01:50:22.023 ( 0.155s) [RANK: 0 ] graphbuild.cpp:503 INFO| Graph edges (local: 210000, non-local: 1800) 2025-10-20 01:50:22.023 ( 0.155s) [RANK: 0 ] partitioners.cpp:315 INFO| Compute graph partition using PT-SCOTCH 2025-10-20 01:50:35.697 ( 13.829s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:50:35.698 ( 13.830s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:50:35.703 ( 13.835s) [RANK: 0 ] graphbuild.cpp:356 INFO| Build local part of mesh dual graph 2025-10-20 01:50:35.743 ( 13.875s) [RANK: 0 ] ordering.cpp:204 INFO| GPS pseudo-diameter:(165) 51345-3678 2025-10-20 01:50:35.750 ( 13.881s) [RANK: 0 ] Topology.cpp:1330 INFO| Create topology (single cell type) 2025-10-20 01:50:35.750 ( 13.882s) [RANK: 0 ] Topology.cpp:1044 INFO| Create topology (generalised) 2025-10-20 01:50:35.760 ( 13.892s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 3 2025-10-20 01:50:35.760 ( 13.892s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2025-10-20 01:50:35.772 ( 13.904s) [RANK: 0 ] partition.cpp:233 INFO| Compute ghost indices 2025-10-20 01:50:35.772 ( 13.904s) [RANK: 0 ] MPI.cpp:97 INFO| Computing communication graph edges (using PCX algorithm). Number of input edges: 0 2025-10-20 01:50:35.773 ( 13.905s) [RANK: 0 ] MPI.cpp:154 INFO| Finished graph edge discovery using PCX algorithm. Number of discovered edges 0 2025-10-20 01:50:35.777 ( 13.908s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:50:35.777 ( 13.908s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:50:35.790 ( 13.922s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.790 ( 13.922s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:35.790 ( 13.922s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.791 ( 13.922s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:35.797 ( 13.928s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 0 2025-10-20 01:50:35.797 ( 13.928s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2025-10-20 01:50:35.797 ( 13.928s) [RANK: 0 ] MPI.h:377 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2025-10-20 01:50:35.797 ( 13.929s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.797 ( 13.929s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:35.797 ( 13.929s) [RANK: 0 ] MPI.h:518 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2025-10-20 01:50:35.798 ( 13.929s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:50:35.798 ( 13.929s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53192x4 2025-10-20 01:50:35.802 ( 13.934s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:50:35.802 ( 13.934s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:50:35.803 ( 13.934s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:50:35.803 ( 13.935s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.803 ( 13.935s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 UnitCube (30x30x30) to be refined 0 times 2025-10-20 01:50:35.805 ( 13.937s) [RANK: 0 ]topologycomputation.cpp:748 INFO| Computing mesh entities of dimension 2 2025-10-20 01:50:35.818 ( 13.950s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.819 ( 13.950s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:35.912 ( 14.043s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.912 ( 14.043s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:35.914 ( 14.046s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2025-10-20 01:50:35.914 ( 14.046s) [RANK: 0 ]topologycomputation.cpp:870 INFO| Computing mesh connectivity 2 - 3 from transpose. 2025-10-20 01:50:35.916 ( 14.047s) [RANK: 0 ] dofmapbuilder.cpp:166 INFO| Checking required entities per dimension 2025-10-20 01:50:35.916 ( 14.047s) [RANK: 0 ] dofmapbuilder.cpp:264 INFO| Cell type:0, dofmap:53192x4 2025-10-20 01:50:35.920 ( 14.052s) [RANK: 0 ] dofmapbuilder.cpp:320 INFO| Global index computation 2025-10-20 01:50:35.920 ( 14.052s) [RANK: 0 ] dofmapbuilder.cpp:637 INFO| Got 1 index_maps 2025-10-20 01:50:35.921 ( 14.052s) [RANK: 0 ] dofmapbuilder.cpp:644 INFO| Get global indices 2025-10-20 01:50:35.921 ( 14.053s) [RANK: 0 ] MPI.cpp:164 INFO| Computing communication graph edges (using NBX algorithm). Number of input edges: 2 2025-10-20 01:50:35.921 ( 14.053s) [RANK: 0 ] MPI.cpp:235 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2025-10-20 01:50:35.922 ( 14.053s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:50:35.922 ( 14.054s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (0,0) 2025-10-20 01:50:35.922 ( 14.054s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (0,0) 2025-10-20 01:50:35.942 ( 14.074s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (2,0) - (3,0) 2025-10-20 01:50:35.942 ( 14.074s) [RANK: 0 ]topologycomputation.cpp:799 INFO| Requesting connectivity (3,0) - (2,0) 2025-10-20 01:50:35.960 ( 14.092s) [RANK: 0 ] SparsityPattern.cpp:385 INFO| Column ghost size increased from 436 to 1214 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.8.0 dolfinx hash: debian_1:0.8.0-11 ufl hash: ea06373d6123e47e4a3c75d92f167503ae508922 petsc version: Petsc Release Version 3.20.6, Mar 29, 2024 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2025-10-20 01:50:36.015 ( 14.147s) [RANK: 0 ] petsc.cpp:700 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Maximum size of coarsest grid 9 Minimum size of coarsest grid 1 Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type hypre linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh (tetrahedra) | 1 13.850000 13.850000 Build dofmap data | 2 0.010000 0.020000 Build sparsity | 1 0.010000 0.010000 Compute connectivity 2-0 | 1 0.000000 0.000000 Compute dof reordering map | 2 0.000000 0.000000 Compute entities of dim = 2 | 1 0.110000 0.110000 Compute graph partition (SCOTCH) | 1 13.650000 13.650000 Compute local part of mesh dual graph | 2 0.050000 0.100000 Compute local-to-local map | 1 0.000000 0.000000 Compute non-local part of mesh dual graph | 1 0.030000 0.030000 Compute-local-to-global links for global/local adjacency list | 1 0.000000 0.000000 Distribute AdjacencyList nodes to destination ranks | 1 0.030000 0.030000 Distribute row-wise data (scalable) | 1 0.000000 0.000000 GPS: create_level_structure | 2 0.003333 0.010000 Gibbs-Poole-Stockmeyer ordering | 1 0.010000 0.010000 Init MPI | 1 0.110000 0.110000 Init PETSc | 1 0.010000 0.010000 Init dofmap from element dofmap | 2 0.010000 0.020000 Init logging | 1 0.000000 0.000000 PETSc Krylov solver | 1 0.220000 0.220000 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000000 0.000000 SCOTCH: call SCOTCH_dgraphPart | 1 13.650000 13.650000 SparsityPattern::finalize | 1 0.010000 0.010000 Topology: create | 1 0.040000 0.040000 Topology: determine shared index ownership | 1 0.010000 0.010000 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.010000 0.010000 ZZZ Assemble | 1 0.090000 0.090000 ZZZ Assemble matrix | 1 0.040000 0.040000 ZZZ Assemble vector | 1 0.010000 0.010000 ZZZ Create Mesh | 1 13.850000 13.850000 ZZZ Create RHS function | 1 0.020000 0.020000 ZZZ Create boundary conditions | 1 0.000000 0.000000 ZZZ Create facets and facet->cell connectivity | 1 0.110000 0.110000 ZZZ FunctionSpace | 1 0.010000 0.010000 ZZZ Solve | 1 0.220000 0.220000 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Mon Oct 20 01:50:36 2025 Using Petsc Release Version 3.20.6, Mar 29, 2024 Max Max/Min Avg Total Time (sec): 1.429e+01 1.000 1.429e+01 Objects: 0.000e+00 0.000 0.000e+00 Flops: 3.553e+06 1.029 3.489e+06 1.047e+07 Flops/sec: 2.487e+05 1.029 2.443e+05 7.328e+05 MPI Msg Count: 3.000e+01 1.000 3.000e+01 9.000e+01 MPI Msg Len (bytes): 1.876e+05 1.235 5.713e+03 5.141e+05 MPI Reductions: 7.000e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.4286e+01 100.0% 1.0468e+07 100.0% 9.000e+01 100.0% 5.713e+03 100.0% 5.200e+01 74.3% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 5 1.0 5.5678e-03 66.8 0.00e+00 0.0 2.4e+01 4.0e+00 5.0e+00 0 0 27 0 7 0 0 27 0 10 0 BuildTwoSidedF 2 1.0 5.5395e-03 53.9 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatMult 7 1.0 1.9187e-03 1.0 1.95e+06 1.0 4.2e+01 5.5e+03 0.0e+00 0 55 47 45 0 0 55 47 45 0 2986 MatConvert 1 1.0 6.7465e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 5 1.0 6.8418e-03 3.9 0.00e+00 0.0 1.2e+01 2.1e+04 2.0e+00 0 0 13 50 3 0 0 13 50 4 0 MatAssemblyEnd 5 1.0 3.0176e-03 1.0 3.78e+03 1.2 1.2e+01 1.4e+03 5.0e+00 0 0 13 3 7 0 0 13 3 10 3 MatGetRowIJ 4 1.0 1.2410e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 4.2444e-04 4.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 MatSetPreallCOO 2 1.0 3.9683e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatSetValuesCOO 2 1.0 7.4305e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecTDot 16 1.0 2.6342e-04 1.2 3.23e+05 1.0 0.0e+00 0.0e+00 1.6e+01 0 9 0 0 23 0 9 0 0 31 3619 VecNorm 8 1.0 2.7548e-04 1.8 1.62e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 11 0 5 0 0 15 1730 VecCopy 2 1.0 5.9908e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 6.0215e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 1.4106e-04 1.6 2.83e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 5914 VecAYPX 6 1.0 8.8912e-05 1.7 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 4021 VecScatterBegin 7 1.0 1.2817e-04 1.2 0.00e+00 0.0 4.2e+01 5.5e+03 0.0e+00 0 0 47 45 0 0 0 47 45 0 0 VecScatterEnd 7 1.0 4.3975e-04 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 3.1742e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.4587e-04 1.1 0.00e+00 0.0 3.6e+01 8.0e+02 3.0e+00 0 0 40 6 4 0 0 40 6 6 0 SFPack 7 1.0 2.8821e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 7 1.0 1.9340e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 6.3823e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 6.5078e-02 1.0 2.84e+06 1.0 4.2e+01 5.5e+03 2.4e+01 0 80 47 45 34 0 80 47 45 46 128 PCSetUp 1 1.0 1.5187e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 6.2343e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 2 2 Matrix 7 7 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 1 1 ======================================================================================================================== Average time to get PetscTime(): 5.08e-08 Average time for MPI_Barrier(): 2.5072e-06 Average time for zero size MPI_Send(): 2.62367e-06 #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2024-08-22 21:13:53 on reproducible Machine characteristics: Linux-6.1.0-23-amd64-x86_64-with-glibc2.39 Using PETSc directory: /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/reproducible-path/petsc-3.20.6+dfsg1=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/14 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 # (source: command line) --problem_type poisson # (source: command line) --scaling_type strong # (source: command line) -ksp_rtol 1.0e-8 # (source: command line) -ksp_type cg # (source: command line) -ksp_view # (source: command line) -log_view # (source: command line) -options_left # (source: command line) -pc_hypre_boomeramg_strong_threshold 0.5 # (source: command line) -pc_hypre_type boomeramg # (source: command line) -pc_type hypre # (source: command line) #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 source: command line Option left: name:--problem_type value: poisson source: command line Option left: name:--scaling_type value: strong source: command line 2025-10-20 01:50:36.286 ( 14.418s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/fenicsx-performance-tests-0.8.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/fenicsx-performance-tests-0.8.0/src -B/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/fenicsx-performance-tests-0.8.0/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/reproducible-path/fenicsx-performance-tests-0.8.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.8.0-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.8.0-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.8.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.8.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.8.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3791/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3791/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3791 and its subdirectories I: Current time: Mon Oct 20 01:50:52 +14 2025 I: pbuilder-time-stamp: 1760874652