I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 11 11:16:58 +14 2024 I: pbuilder-time-stamp: 1718054218 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenics-dolfinx_0.8.0-9.dsc] I: copying [./fenics-dolfinx_0.8.0.orig.tar.gz] I: copying [./fenics-dolfinx_0.8.0-9.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 5 09:02:20 2024 gpgv: using RSA key 1B5D04B1E507BBF03669E2B801F35FC33E73AF8C gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenics-dolfinx_0.8.0-9.dsc: no acceptable signature found dpkg-source: info: extracting fenics-dolfinx in fenics-dolfinx-0.8.0 dpkg-source: info: unpacking fenics-dolfinx_0.8.0.orig.tar.gz dpkg-source: info: unpacking fenics-dolfinx_0.8.0-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying python_cmake_module_path.patch dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying python_unit_test_32bit.patch dpkg-source: info: applying docs_local_mathjax.patch dpkg-source: info: applying debian_version_id.patch dpkg-source: info: applying demo_no_vtk_adios2.patch dpkg-source: info: applying adios_config_mpi.patch dpkg-source: info: applying test_timing_precision.patch dpkg-source: info: applying big_endian_skip_adios2_tests.patch dpkg-source: info: applying python_local_license.patch dpkg-source: info: applying test_adios2_MPI.patch dpkg-source: info: applying pusimp.patch dpkg-source: info: applying Newton_KSP_ref_counter_PR3190.patch dpkg-source: info: applying 42c43485e81ada306f0b3f1dc735d95539174cbc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 10 21:17 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=2ed30be1810948f7839cdf822310c2e5 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3905412 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZhJmvlP0/pbuilderrc_EGZX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZhJmvlP0/b2 --logfile b2/build.log fenics-dolfinx_0.8.0-9.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, gfortran, catch2 (>= 3~), chrpath, libbasix-dev (>= 0.8.0~), python3-basix, libboost-chrono-dev, libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-math-dev, libboost-mpi-dev, libboost-program-options-dev, libboost-serialization-dev, libboost-thread-dev, libboost-timer-dev, libeigen3-dev, libhdf5-mpi-dev, libadios2-mpi-c++11-dev, libpugixml-dev, libsuitesparse-dev, libscotch-dev, libxml2-dev, mpi-default-dev, libpetsc-real-dev, libpetsc-complex-dev, libslepc-real-dev, libslepc-complex-dev, python3-setuptools, pybuild-plugin-pyproject, python3-petsc4py, python3-petsc4py-real, python3-petsc4py-complex, python3-slepc4py, python3-slepc4py-real, python3-slepc4py-complex, pkgconf, python3-all-dev, python3-cffi, python3-pkg-resources, python3-ffcx (>= 1:0.8.0~), python3-ffcx (<< 1:0.9.0), python3-ufl (>= 2024.1.0~), python3-mpi4py, python3-nanobind (>= 2.0.0~), python3-numpy (>= 1:1.21~), python3-pip, python3-ply, python3-pytest, python3-pusimp, python3-requests, python3-scikit-build-core, python3-scipy, python3-sphinx, python3-virtualenv, doxygen, graphviz, libjs-mathjax, libjs-modernizr, python3-jupytext, python3-matplotlib, python3-myst-parser, python3-sphinx-rtd-theme dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19687 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on catch2 (>= 3~); however: Package catch2 is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libbasix-dev (>= 0.8.0~); however: Package libbasix-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-basix; however: Package python3-basix is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-mpi-dev; however: Package libboost-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-timer-dev; however: Package libboost-timer-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libadios2-mpi-c++11-dev; however: Package libadios2-mpi-c++11-dev is not installed. pbuilder-satisfydepends-dummy depends on libpugixml-dev; however: Package libpugixml-dev is not installed. pbuilder-satisfydepends-dummy depends on libsuitesparse-dev; however: Package libsuitesparse-dev is not installed. pbuilder-satisfydepends-dummy depends on libscotch-dev; however: Package libscotch-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libpetsc-real-dev; however: Package libpetsc-real-dev is not installed. pbuilder-satisfydepends-dummy depends on libpetsc-complex-dev; however: Package libpetsc-complex-dev is not installed. pbuilder-satisfydepends-dummy depends on libslepc-real-dev; however: Package libslepc-real-dev is not installed. pbuilder-satisfydepends-dummy depends on libslepc-complex-dev; however: Package libslepc-complex-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-complex; however: Package python3-petsc4py-complex is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-complex; however: Package python3-slepc4py-complex is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx (>= 1:0.8.0~); however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx (<< 1:0.9.0); however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on python3-ufl (>= 2024.1.0~); however: Package python3-ufl is not installed. pbuilder-satisfydepends-dummy depends on python3-mpi4py; however: Package python3-mpi4py is not installed. pbuilder-satisfydepends-dummy depends on python3-nanobind (>= 2.0.0~); however: Package python3-nanobind is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1:1.21~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-ply; however: Package python3-ply is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pusimp; however: Package python3-pusimp is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-scikit-build-core; however: Package python3-scikit-build-core is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-virtualenv; however: Package python3-virtualenv is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on libjs-modernizr; however: Package libjs-modernizr is not installed. pbuilder-satisfydepends-dummy depends on python3-jupytext; however: Package python3-jupytext is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-myst-parser; however: Package python3-myst-parser is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} catch2{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} graphviz{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libabsl20230802{a} libadios2-common-c++11-dev{a} libadios2-common-core-dev{a} libadios2-mpi-auxiliary-2{a} libadios2-mpi-auxiliary-dev{a} libadios2-mpi-c++11-2{a} libadios2-mpi-c++11-dev{a} libadios2-mpi-core-2{a} libadios2-mpi-core-dev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libavif16{a} libbasix-dev{a} libbasix0.8{a} libblas-dev{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libbtf2{a} libc6-dbg{a} libcairo2{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcdt5{a} libcgraph6{a} libcholmod5{a} libclang-cpp16t64{a} libclang1-16t64{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.29.0{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-modernizr{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} libldl3{a} liblerc4{a} libllvm16t64{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmumps-5.6t64{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnuma-dev{a} libnuma1{a} libopenjp2-7{a} libopenmpi-dev{a} libopenmpi3t64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparpack2-dev{a} libparpack2t64{a} libparu0{a} libpathplan4{a} libpciaccess0{a} libpetsc-complex-dev{a} libpetsc-complex3.20{a} libpetsc-complex3.20-dev{a} libpetsc-real-dev{a} libpetsc-real3.20{a} libpetsc-real3.20-dev{a} libpetsc3.20-dev-common{a} libpgm-5.3-0t64{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} librav1e0{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libsharpyuv0{a} libslepc-complex-dev{a} libslepc-complex3.20{a} libslepc-complex3.20-dev{a} libslepc-real-dev{a} libslepc-real3.20{a} libslepc-real3.20-dev{a} libsm6{a} libsodium23{a} libspex3{a} libspqr4{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu6{a} libsvtav1enc1d1{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtk8.6{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-aztecoo-dev{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-ml-dev{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-trilinosss-dev{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtrilinos-zoltan-dev{a} libuchardet0{a} libucx0{a} libumfpack6{a} libuv1t64{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxnvctrl0{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libyaml-cpp0.8{a} libyaml-dev{a} libyuv0{a} libz3-4{a} libzmq5{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nanobind-dev{a} netbase{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-petsc4py-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-basix{a} python3-brotli{a} python3-build{a} python3-certifi{a} python3-cffi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distlib{a} python3-distutils{a} python3-docutils{a} python3-fastjsonschema{a} python3-ffcx{a} python3-filelock{a} python3-fonttools{a} python3-fs{a} python3-hatch-vcs{a} python3-hatchling{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-installer{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-jupytext{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-markupsafe{a} python3-matplotlib{a} python3-mdit-py-plugins{a} python3-mdurl{a} python3-minimal{a} python3-mpi4py{a} python3-mpmath{a} python3-myst-parser{a} python3-nanobind{a} python3-nbformat{a} python3-numpy{a} python3-packaging{a} python3-pathspec{a} python3-petsc4py{a} python3-petsc4py-complex{a} python3-petsc4py-complex3.20{a} python3-petsc4py-real{a} python3-petsc4py-real3.20{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pip-whl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-ply{a} python3-pusimp{a} python3-pycparser{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pyproject-metadata{a} python3-pytest{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scikit-build-core{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-setuptools-whl{a} python3-six{a} python3-slepc4py{a} python3-slepc4py-complex{a} python3-slepc4py-complex3.20{a} python3-slepc4py-real{a} python3-slepc4py-real3.20{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-sympy{a} python3-tk{a} python3-toml{a} python3-traitlets{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufl{a} python3-ufolib2{a} python3-urllib3{a} python3-virtualenv{a} python3-wheel{a} python3-wheel-whl{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} robin-map-dev{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} swig{a} tk8.6-blt2.5{a} trilinos-dev{a} tzdata{a} unicode-data{a} valgrind{a} valgrind-mpi{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation2 gdb gdb-minimal isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libglib2.0-data libgraphblas-dev libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libldap-common libmail-sendmail-perl libpaper-utils libpetsc3.20-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-json-pointer python3-olefile python3-rfc3987 python3-uritemplate python3-webcolors shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 529 newly installed, 0 to remove and 0 not upgraded. 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[158 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.1-8 [96.0 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 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trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 55 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libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.4-1 [2167 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.4-1 [10.7 MB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 93 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240422 [107 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.0-1 [189 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 libgfortran-13-dev amd64 13.2.0-25 [847 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-25 [10.6 MB] Get: 119 http://deb.debian.org/debian trixie/main amd64 gfortran-13 amd64 13.2.0-25 [12.8 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7 [1280 B] Get: 121 http://deb.debian.org/debian trixie/main amd64 gfortran amd64 4:13.2.0-7 [1440 B] Get: 122 http://deb.debian.org/debian trixie/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.8.2-3 [1869 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.4.2-1 [551 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 131 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 132 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0.1888.20240509-4 [170 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.0.4-3 [106 kB] Get: 135 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 136 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 137 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 138 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 139 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 141 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 142 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 143 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 144 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 145 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 146 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.80.2-2 [1485 kB] Get: 147 http://deb.debian.org/debian trixie/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get: 148 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 149 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 150 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 151 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 152 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 153 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 154 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 155 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 156 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 157 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 158 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 159 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [218 kB] Get: 160 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [48.1 kB] Get: 161 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [35.0 kB] Get: 162 http://deb.debian.org/debian trixie/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB] Get: 163 http://deb.debian.org/debian trixie/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB] Get: 164 http://deb.debian.org/debian trixie/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB] Get: 165 http://deb.debian.org/debian trixie/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB] Get: 166 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 167 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 170 http://deb.debian.org/debian trixie/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 171 http://deb.debian.org/debian trixie/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB] Get: 172 http://deb.debian.org/debian trixie/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get: 173 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get: 174 http://deb.debian.org/debian trixie/main amd64 libibverbs1 amd64 50.0-2+b1 [61.7 kB] Get: 175 http://deb.debian.org/debian trixie/main amd64 ibverbs-providers amd64 50.0-2+b1 [342 kB] Get: 176 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 177 http://deb.debian.org/debian trixie/main amd64 libadios2-common-c++11-dev all 2.9.2+dfsg1-13 [23.0 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 libadios2-common-core-dev amd64 2.9.2+dfsg1-13+b1 [114 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get: 180 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get: 181 http://deb.debian.org/debian trixie/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 182 http://deb.debian.org/debian trixie/main amd64 librdmacm1t64 amd64 50.0-2+b1 [70.2 kB] Get: 183 http://deb.debian.org/debian trixie/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get: 184 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-2 amd64 2.9.2+dfsg1-13+b1 [420 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-auxiliary-dev amd64 2.9.2+dfsg1-13+b1 [21.2 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10 [131 kB] Get: 187 http://deb.debian.org/debian trixie/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [53.9 kB] Get: 188 http://deb.debian.org/debian trixie/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get: 189 http://deb.debian.org/debian trixie/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get: 190 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 191 http://deb.debian.org/debian trixie/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get: 192 http://deb.debian.org/debian trixie/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 libpmix2t64 amd64 5.0.2-3 [652 kB] Get: 195 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 196 http://deb.debian.org/debian trixie/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get: 197 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get: 198 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get: 199 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get: 200 http://deb.debian.org/debian trixie/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get: 201 http://deb.debian.org/debian trixie/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get: 202 http://deb.debian.org/debian trixie/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get: 203 http://deb.debian.org/debian trixie/main amd64 libucx0 amd64 1.16.0+ds-5 [1109 kB] Get: 204 http://deb.debian.org/debian trixie/main amd64 libopenmpi3t64 amd64 4.1.6-13.3 [2426 kB] Get: 205 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 206 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 207 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-3.3 [1301 kB] Get: 208 http://deb.debian.org/debian trixie/main amd64 libpugixml1v5 amd64 1.14-0.1+b1 [86.6 kB] Get: 209 http://deb.debian.org/debian trixie/main amd64 libsodium23 amd64 1.0.18-1+b1 [163 kB] Get: 210 http://deb.debian.org/debian trixie/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b1 [132 kB] Get: 211 http://deb.debian.org/debian trixie/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1 [221 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1 [161 kB] Get: 213 http://deb.debian.org/debian trixie/main amd64 libzmq5 amd64 4.3.5-1+b2 [281 kB] Get: 214 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-2 amd64 2.9.2+dfsg1-13+b1 [1657 kB] Get: 215 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-2 amd64 2.9.2+dfsg1-13+b1 [198 kB] Get: 216 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-core-dev amd64 2.9.2+dfsg1-13+b1 [78.1 kB] Get: 217 http://deb.debian.org/debian trixie/main amd64 libadios2-mpi-c++11-dev amd64 2.9.2+dfsg1-13+b1 [9224 B] Get: 218 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 219 http://deb.debian.org/debian trixie/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get: 220 http://deb.debian.org/debian trixie/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get: 221 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 222 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 libarpack2t64 amd64 3.9.1-1.1+b1 [104 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 225 http://deb.debian.org/debian trixie/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 226 http://deb.debian.org/debian trixie/main amd64 libarpack2-dev amd64 3.9.1-1.1+b1 [119 kB] Get: 227 http://deb.debian.org/debian trixie/main amd64 libbasix0.8 amd64 0.8.0-7 [389 kB] Get: 228 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 229 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 230 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 231 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 233 http://deb.debian.org/debian trixie/main amd64 libbasix-dev amd64 0.8.0-7 [62.4 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3 [10.6 MB] Get: 235 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-3 [233 kB] Get: 236 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-3 [235 kB] Get: 237 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3 [239 kB] Get: 238 http://deb.debian.org/debian trixie/main amd64 libboost-chrono1.83-dev amd64 1.83.0-3 [244 kB] Get: 239 http://deb.debian.org/debian trixie/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 240 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3 [230 kB] Get: 241 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3 [332 kB] Get: 242 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3 [372 kB] Get: 243 http://deb.debian.org/debian trixie/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3 [239 kB] Get: 244 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 245 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3 [280 kB] Get: 246 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-3 [230 kB] Get: 247 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-3 [231 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-3 [295 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 250 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-3 [324 kB] Get: 251 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 252 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-3 [342 kB] Get: 253 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3 [260 kB] Get: 254 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 255 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83.0 amd64 1.83.0-3 [506 kB] Get: 256 http://deb.debian.org/debian trixie/main amd64 libboost-math1.83-dev amd64 1.83.0-3 [549 kB] Get: 257 http://deb.debian.org/debian trixie/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 258 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83.0 amd64 1.83.0-3 [271 kB] Get: 259 http://deb.debian.org/debian trixie/main amd64 openmpi-common all 4.1.6-13.3 [169 kB] Get: 260 http://deb.debian.org/debian trixie/main amd64 libnl-3-dev amd64 3.7.0-0.3 [99.4 kB] Get: 261 http://deb.debian.org/debian trixie/main amd64 libnl-route-3-dev amd64 3.7.0-0.3 [199 kB] Get: 262 http://deb.debian.org/debian trixie/main amd64 libibverbs-dev amd64 50.0-2+b1 [642 kB] Get: 263 http://deb.debian.org/debian trixie/main amd64 libnuma-dev amd64 2.0.18-1 [36.2 kB] Get: 264 http://deb.debian.org/debian trixie/main amd64 libltdl-dev amd64 2.4.7-7+b1 [164 kB] Get: 265 http://deb.debian.org/debian trixie/main amd64 libhwloc-dev amd64 2.10.0-1+b1 [250 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [181 kB] Get: 267 http://deb.debian.org/debian trixie/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [107 kB] Get: 268 http://deb.debian.org/debian trixie/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [60.8 kB] Get: 269 http://deb.debian.org/debian trixie/main amd64 libevent-dev amd64 2.1.12-stable-10 [305 kB] Get: 270 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 271 http://deb.debian.org/debian trixie/main amd64 libpmix-dev amd64 5.0.2-3 [3940 kB] Get: 272 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 273 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 274 http://deb.debian.org/debian trixie/main amd64 openmpi-bin amd64 4.1.6-13.3 [226 kB] Get: 275 http://deb.debian.org/debian trixie/main amd64 libopenmpi-dev amd64 4.1.6-13.3 [972 kB] Get: 276 http://deb.debian.org/debian trixie/main amd64 mpi-default-dev amd64 1.15 [3152 B] Get: 277 http://deb.debian.org/debian trixie/main amd64 libboost-mpi1.83-dev amd64 1.83.0-3 [289 kB] Get: 278 http://deb.debian.org/debian trixie/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 279 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3 [345 kB] Get: 280 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3 [373 kB] Get: 281 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 282 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 283 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-3 [269 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83-dev amd64 1.83.0-3 [276 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 286 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83.0 amd64 1.83.0-3 [234 kB] Get: 287 http://deb.debian.org/debian trixie/main amd64 libboost-timer1.83-dev amd64 1.83.0-3 [236 kB] Get: 288 http://deb.debian.org/debian trixie/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 289 http://deb.debian.org/debian trixie/main amd64 libbtf2 amd64 1:7.7.0+dfsg-2 [23.3 kB] Get: 290 http://deb.debian.org/debian trixie/main amd64 libc6-dbg amd64 2.38-12 [6920 kB] Get: 291 http://deb.debian.org/debian trixie/main amd64 libcamd3 amd64 1:7.7.0+dfsg-2 [36.0 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 libccolamd3 amd64 1:7.7.0+dfsg-2 [37.9 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get: 294 http://deb.debian.org/debian trixie/main amd64 libcholmod5 amd64 1:7.7.0+dfsg-2 [623 kB] Get: 295 http://deb.debian.org/debian trixie/main amd64 libcombblas2.0.0t64 amd64 2.0.0-3.1+b1 [285 kB] Get: 296 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.8.0-1 [548 kB] Get: 297 http://deb.debian.org/debian trixie/main amd64 libcxsparse4 amd64 1:7.7.0+dfsg-2 [82.3 kB] Get: 298 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 299 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-1+b2 [779 kB] Get: 300 http://deb.debian.org/debian trixie/main amd64 libfftw3-long3 amd64 3.3.10-1+b2 [344 kB] Get: 301 http://deb.debian.org/debian trixie/main amd64 libfftw3-quad3 amd64 3.3.10-1+b2 [608 kB] Get: 302 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-1+b2 [806 kB] Get: 303 http://deb.debian.org/debian trixie/main amd64 libfftw3-bin amd64 3.3.10-1+b2 [52.3 kB] Get: 304 http://deb.debian.org/debian trixie/main amd64 libfftw3-dev amd64 3.3.10-1+b2 [2125 kB] Get: 305 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi3 amd64 3.3.10-1+b2 [64.2 kB] Get: 306 http://deb.debian.org/debian trixie/main amd64 libfftw3-mpi-dev amd64 3.3.10-1+b2 [67.0 kB] Get: 307 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-3.3 [90.1 kB] Get: 308 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-3.3 [63.5 kB] Get: 309 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.6 kB] Get: 310 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 311 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 312 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 313 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 314 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 315 http://deb.debian.org/debian trixie/main amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-3.3 [2705 kB] Get: 316 http://deb.debian.org/debian trixie/main amd64 libhdf5-mpi-dev amd64 1.10.10+repack-3.3 [15.5 kB] Get: 317 http://deb.debian.org/debian trixie/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b1 [175 kB] Get: 318 http://deb.debian.org/debian trixie/main amd64 libptscotch-7.0 amd64 7.0.4-2 [681 kB] Get: 319 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-1+b2 [605 kB] Get: 320 http://deb.debian.org/debian trixie/main amd64 libhypre-2.29.0 amd64 2.29.0-2 [1648 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 libsuperlu6 amd64 6.0.1+dfsg1-1+b1 [170 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dev amd64 6.0.1+dfsg1-1+b1 [21.8 kB] Get: 323 http://deb.debian.org/debian trixie/main amd64 libhypre-dev amd64 2.29.0-2 [1901 kB] Get: 324 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get: 325 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 326 http://deb.debian.org/debian trixie/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 327 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 328 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get: 329 http://deb.debian.org/debian trixie/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 330 http://deb.debian.org/debian trixie/main amd64 libklu2 amd64 1:7.7.0+dfsg-2 [87.1 kB] Get: 331 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get: 332 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 333 http://deb.debian.org/debian trixie/main amd64 libldl3 amd64 1:7.7.0+dfsg-2 [23.0 kB] Get: 334 http://deb.debian.org/debian trixie/main amd64 mpi-default-bin amd64 1.15 [2408 B] Get: 335 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1 [1567 kB] Get: 336 http://deb.debian.org/debian trixie/main amd64 libmumps-5.6t64 amd64 5.6.2-2.1+b1 [1895 kB] Get: 337 http://deb.debian.org/debian trixie/main amd64 libmumps-headers-dev all 5.6.2-2.1 [34.7 kB] Get: 338 http://deb.debian.org/debian trixie/main amd64 libscalapack-openmpi-dev amd64 2.2.1-3.1 [9772 B] Get: 339 http://deb.debian.org/debian trixie/main amd64 libscalapack-mpi-dev amd64 2.2.1-3.1 [4916 B] Get: 340 http://deb.debian.org/debian trixie/main amd64 libmumps-dev amd64 5.6.2-2.1+b1 [1786 kB] Get: 341 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 342 http://deb.debian.org/debian trixie/main amd64 libparpack2t64 amd64 3.9.1-1.1+b1 [99.3 kB] Get: 343 http://deb.debian.org/debian trixie/main amd64 libparpack2-dev amd64 3.9.1-1.1+b1 [110 kB] Get: 344 http://deb.debian.org/debian trixie/main amd64 libumfpack6 amd64 1:7.7.0+dfsg-2 [267 kB] Get: 345 http://deb.debian.org/debian trixie/main amd64 libparu0 amd64 1:7.7.0+dfsg-2 [61.3 kB] Get: 346 http://deb.debian.org/debian trixie/main amd64 libspqr4 amd64 1:7.7.0+dfsg-2 [140 kB] Get: 347 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 libpetsc-complex3.20 amd64 3.20.6+dfsg1-1 [7124 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-mongoose3 amd64 1:7.7.0+dfsg-2 [45.1 kB] Get: 350 http://deb.debian.org/debian trixie/main amd64 librbio4 amd64 1:7.7.0+dfsg-2 [38.5 kB] Get: 351 http://deb.debian.org/debian trixie/main amd64 libspex3 amd64 1:7.7.0+dfsg-2 [55.9 kB] Get: 352 http://deb.debian.org/debian trixie/main amd64 libsuitesparse-dev amd64 1:7.7.0+dfsg-2 [1437 kB] Get: 353 http://deb.debian.org/debian trixie/main amd64 libscotch-7.0 amd64 7.0.4-2 [410 kB] Get: 354 http://deb.debian.org/debian trixie/main amd64 libscotch-dev amd64 7.0.4-2 [1564 kB] Get: 355 http://deb.debian.org/debian trixie/main amd64 libptscotch-dev amd64 7.0.4-2 [1352 kB] Get: 356 http://deb.debian.org/debian trixie/main amd64 opencl-c-headers all 3.0~2024.05.08-1 [46.1 kB] Get: 357 http://deb.debian.org/debian trixie/main amd64 opencl-clhpp-headers all 3.0~2023.12.14-1 [49.5 kB] Get: 358 http://deb.debian.org/debian trixie/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b1 [8676 B] Get: 359 http://deb.debian.org/debian trixie/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-1+b2 [911 kB] Get: 360 http://deb.debian.org/debian trixie/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 361 http://deb.debian.org/debian trixie/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 362 http://deb.debian.org/debian trixie/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get: 363 http://deb.debian.org/debian trixie/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get: 364 http://deb.debian.org/debian trixie/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 365 http://deb.debian.org/debian trixie/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB] Get: 366 http://deb.debian.org/debian trixie/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get: 367 http://deb.debian.org/debian trixie/main amd64 libyaml-dev amd64 0.2.5-1+b1 [63.2 kB] Get: 368 http://deb.debian.org/debian trixie/main amd64 libpetsc3.20-dev-common all 3.20.6+dfsg1-1 [297 kB] Get: 369 http://deb.debian.org/debian trixie/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-6 [386 kB] Get: 370 http://deb.debian.org/debian trixie/main amd64 trilinos-dev amd64 13.2.0-6 [12.5 kB] Get: 371 http://deb.debian.org/debian trixie/main amd64 libtrilinos-zoltan-dev amd64 13.2.0-6 [33.8 kB] Get: 372 http://deb.debian.org/debian trixie/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB] Get: 373 http://deb.debian.org/debian trixie/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB] Get: 374 http://deb.debian.org/debian trixie/main amd64 libpetsc-complex3.20-dev amd64 3.20.6+dfsg1-1 [6641 kB] Get: 375 http://deb.debian.org/debian trixie/main amd64 libpetsc-complex-dev all 3.20.6+dfsg1-1 [11.5 kB] Get: 376 http://deb.debian.org/debian trixie/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-6 [107 kB] Get: 377 http://deb.debian.org/debian trixie/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-6 [1278 kB] Get: 378 http://deb.debian.org/debian trixie/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-6 [441 kB] Get: 379 http://deb.debian.org/debian trixie/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-6 [126 kB] Get: 380 http://deb.debian.org/debian trixie/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-6 [452 kB] Get: 381 http://deb.debian.org/debian trixie/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-6 [87.7 kB] Get: 382 http://deb.debian.org/debian trixie/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-6 [119 kB] Get: 383 http://deb.debian.org/debian trixie/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-6 [211 kB] Get: 384 http://deb.debian.org/debian trixie/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-6 [94.2 kB] Get: 385 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-6 [492 kB] Get: 386 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-6 [1009 kB] Get: 387 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.20 amd64 3.20.6+dfsg1-1 [6914 kB] Get: 388 http://deb.debian.org/debian trixie/main amd64 libtrilinos-aztecoo-dev amd64 13.2.0-6 [50.8 kB] Get: 389 http://deb.debian.org/debian trixie/main amd64 libtrilinos-trilinosss-dev amd64 13.2.0-6 [33.4 kB] Get: 390 http://deb.debian.org/debian trixie/main amd64 libtrilinos-ml-dev amd64 13.2.0-6 [117 kB] Get: 391 http://deb.debian.org/debian trixie/main amd64 libpetsc-real3.20-dev amd64 3.20.6+dfsg1-1 [6650 kB] Get: 392 http://deb.debian.org/debian trixie/main amd64 libpetsc-real-dev all 3.20.6+dfsg1-1 [11.5 kB] Get: 393 http://deb.debian.org/debian trixie/main amd64 libpugixml-dev amd64 1.14-0.1+b1 [107 kB] Get: 394 http://deb.debian.org/debian trixie/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 395 http://deb.debian.org/debian trixie/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 396 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 397 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.3-1 [1951 kB] Get: 398 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.3-1 [2107 kB] Get: 399 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.3-1 [5069 kB] Get: 400 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.11.8-1 [1072 B] Get: 401 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get: 402 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get: 403 http://deb.debian.org/debian trixie/main amd64 libslepc-complex3.20 amd64 3.20.2+dfsg1-2 [1258 kB] Get: 404 http://deb.debian.org/debian trixie/main amd64 libslepc-complex3.20-dev amd64 3.20.2+dfsg1-2 [5688 kB] Get: 405 http://deb.debian.org/debian trixie/main amd64 libslepc-complex-dev amd64 3.20.2+dfsg1-2 [14.9 kB] Get: 406 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.20 amd64 3.20.2+dfsg1-2 [1221 kB] Get: 407 http://deb.debian.org/debian trixie/main amd64 libslepc-real3.20-dev amd64 3.20.2+dfsg1-2 [5674 kB] Get: 408 http://deb.debian.org/debian trixie/main amd64 libslepc-real-dev amd64 3.20.2+dfsg1-2 [14.9 kB] Get: 409 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 410 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 411 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.3+b3 [787 kB] Get: 412 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 413 http://deb.debian.org/debian trixie/main amd64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 414 http://deb.debian.org/debian trixie/main amd64 nanobind-dev all 2.0.0-2 [147 kB] Get: 415 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 416 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.1.0-1 [11.3 kB] Get: 417 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 418 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 419 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.1-1 [34.1 kB] Get: 420 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 421 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20240422 [11.1 kB] Get: 422 http://deb.debian.org/debian trixie/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 423 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 424 http://deb.debian.org/debian trixie/main amd64 sphinx-common all 7.2.6-8 [702 kB] Get: 425 http://deb.debian.org/debian trixie/main amd64 python-petsc4py-doc all 3.20.5-3 [1987 kB] Get: 426 http://deb.debian.org/debian trixie/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 427 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 428 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 429 http://deb.debian.org/debian trixie/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 430 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 431 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.3-1 [499 kB] Get: 432 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.11.8-1 [1072 B] Get: 433 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 434 http://deb.debian.org/debian trixie/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get: 435 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get: 436 http://deb.debian.org/debian trixie/main amd64 python3-babel all 2.14.0-1 [111 kB] Get: 437 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [5465 kB] Get: 438 http://deb.debian.org/debian trixie/main amd64 python3-ufl all 2024.1.0-1 [149 kB] Get: 439 http://deb.debian.org/debian trixie/main amd64 python3-basix amd64 0.8.0-7 [151 kB] Get: 440 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get: 441 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get: 442 http://deb.debian.org/debian trixie/main amd64 python3-cffi-backend amd64 1.16.0-2+b2 [112 kB] Get: 443 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-6 [63.7 kB] Get: 444 http://deb.debian.org/debian trixie/main amd64 python3-pycparser all 2.22-1 [78.0 kB] Get: 445 http://deb.debian.org/debian trixie/main amd64 python3-cffi all 1.16.0-2 [88.5 kB] Get: 446 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 447 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 448 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get: 449 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 450 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get: 451 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 452 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 453 http://deb.debian.org/debian trixie/main amd64 python3-distlib all 0.3.8-1 [257 kB] Get: 454 http://deb.debian.org/debian trixie/main amd64 python3-roman all 3.3-3 [9880 B] Get: 455 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 456 http://deb.debian.org/debian trixie/main amd64 python3-fastjsonschema all 2.19.1-1 [21.3 kB] Get: 457 http://deb.debian.org/debian trixie/main amd64 python3-ffcx all 1:0.8.0-1 [100 kB] Get: 458 http://deb.debian.org/debian trixie/main amd64 python3-filelock all 3.14.0-1 [10.9 kB] Get: 459 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.12.0-2 [21.0 MB] Get: 460 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.0-1 [72.1 kB] Get: 461 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 462 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 463 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.12-8 [3869 kB] Get: 464 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get: 465 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get: 466 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get: 467 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 468 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get: 469 http://deb.debian.org/debian trixie/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 470 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 471 http://deb.debian.org/debian trixie/main amd64 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get: 472 http://deb.debian.org/debian trixie/main amd64 python3-hatchling all 1.24.2-1 [53.2 kB] Get: 473 http://deb.debian.org/debian trixie/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get: 474 http://deb.debian.org/debian trixie/main amd64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 475 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get: 476 http://deb.debian.org/debian trixie/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 477 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 478 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get: 479 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 480 http://deb.debian.org/debian trixie/main amd64 python3-rpds-py amd64 0.12.0-3 [276 kB] Get: 481 http://deb.debian.org/debian trixie/main amd64 python3-referencing all 0.31.0-1 [22.2 kB] Get: 482 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get: 483 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema all 4.19.2-3 [71.3 kB] Get: 484 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.2.1-1 [16.0 kB] Get: 485 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.5.0-2 [90.7 kB] Get: 486 http://deb.debian.org/debian trixie/main amd64 python3-jupyter-core all 5.3.2-2 [31.6 kB] Get: 487 http://deb.debian.org/debian trixie/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get: 488 http://deb.debian.org/debian trixie/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 489 http://deb.debian.org/debian trixie/main amd64 python3-mdit-py-plugins all 0.4.1-1 [31.6 kB] Get: 490 http://deb.debian.org/debian trixie/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 491 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get: 492 http://deb.debian.org/debian trixie/main amd64 python3-jupytext all 1.16.1+ds1-2 [87.2 kB] Get: 493 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get: 494 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get: 495 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.12.3-3.1 [113 kB] Get: 496 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get: 497 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 498 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get: 499 http://deb.debian.org/debian trixie/main amd64 python3-mpi4py amd64 3.1.6-1 [758 kB] Get: 500 http://deb.debian.org/debian trixie/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 501 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get: 502 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get: 503 http://deb.debian.org/debian trixie/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 504 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.2.6-8 [552 kB] Get: 505 http://deb.debian.org/debian trixie/main amd64 python3-myst-parser all 3.0.1-1 [77.5 kB] Get: 506 http://deb.debian.org/debian trixie/main amd64 python3-nanobind all 2.0.0-2 [36.3 kB] Get: 507 http://deb.debian.org/debian trixie/main amd64 swig amd64 4.2.1-1 [1437 kB] Get: 508 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-real3.20 amd64 3.20.5-3 [2019 kB] Get: 509 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-real all 3.20.5-3 [9728 B] Get: 510 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-complex3.20 amd64 3.20.5-3 [2020 kB] Get: 511 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py-complex all 3.20.5-3 [9732 B] Get: 512 http://deb.debian.org/debian trixie/main amd64 python3-petsc4py all 3.20.5-3 [9896 B] Get: 513 http://deb.debian.org/debian trixie/main amd64 python3-pip all 24.0+dfsg-2 [1517 kB] Get: 514 http://deb.debian.org/debian trixie/main amd64 python3-pip-whl all 24.0+dfsg-2 [1774 kB] Get: 515 http://deb.debian.org/debian trixie/main amd64 python3-pusimp all 0.1.0-3 [9664 B] Get: 516 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-metadata all 0.8.0-1 [9648 B] Get: 517 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.1.2-1 [246 kB] Get: 518 http://deb.debian.org/debian trixie/main amd64 python3-scikit-build-core all 0.9.4-1 [104 kB] Get: 519 http://deb.debian.org/debian trixie/main amd64 python3-setuptools-whl all 68.1.2-2 [797 kB] Get: 520 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-real3.20 amd64 3.20.2-1 [501 kB] Get: 521 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-real all 3.20.2-1 [6288 B] Get: 522 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-complex3.20 amd64 3.20.2-1 [499 kB] Get: 523 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py-complex all 3.20.2-1 [6360 B] Get: 524 http://deb.debian.org/debian trixie/main amd64 python3-slepc4py all 3.20.2-1 [6480 B] Get: 525 http://deb.debian.org/debian trixie/main amd64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1021 kB] Get: 526 http://deb.debian.org/debian trixie/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 527 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 2.0.0+dfsg-1 [28.3 kB] Get: 528 http://deb.debian.org/debian trixie/main amd64 python3-wheel-whl all 0.43.0-1 [68.8 kB] Get: 529 http://deb.debian.org/debian trixie/main amd64 python3-virtualenv all 20.26.2+ds-1 [70.8 kB] Fetched 457 MB in 20s (23.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19687 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20029 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21021 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../004-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../007-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../008-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../010-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up libldl3:amd64 (1:7.7.0+dfsg-2) ... Setting up file (1:5.45-3) ... Setting up libboost-filesystem1.83.0:amd64 (1.83.0-3) ... Setting up libjs-modernizr (3.13.0-0.1) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up librav1e0:amd64 (0.7.1-2) ... Setting up libaec0:amd64 (1.1.3-1) ... Setting up libpugixml1v5:amd64 (1.14-0.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libc6-dbg:amd64 (2.38-12) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jun 10 21:23:26 UTC 2024. Universal Time is now: Mon Jun 10 21:23:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-3) ... Setting up unicode-data (15.1.0-1) ... Setting up libtrilinos-trilinosss-13.2:amd64 (13.2.0-6) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-3) ... Setting up libbtf2:amd64 (1:7.7.0+dfsg-2) ... Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up libmunge2:amd64 (0.5.15-4) ... Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3) ... Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libpathplan4:amd64 (2.42.2-9+b1) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libfftw3-quad3:amd64 (3.3.10-1+b2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:amd64 (3.2.1-3) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libhwloc15:amd64 (2.10.0-1+b1) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libltdl7:amd64 (2.4.7-7+b1) ... Setting up opencl-c-headers (3.0~2024.05.08-1) ... Setting up libfftw3-double3:amd64 (3.3.10-1+b2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libfmt9:amd64 (9.1.0+ds1-2) ... Setting up libmumps-headers-dev (5.6.2-2.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up robin-map-dev (1.3.0-1) ... Setting up libnuma1:amd64 (2.0.18-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:amd64 (1.4.2-1) ... Setting up sensible-utils (0.0.22) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up librhash0:amd64 (1.4.3-3+b1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libjson-perl (4.10000-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-13.3) ... Setting up libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.29.4-1) ... Setting up libcdt5:amd64 (2.42.2-9+b1) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libcgraph6:amd64 (2.42.2-9+b1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:amd64 (1.11.0-5) ... Setting up libboost-math1.83.0:amd64 (1.83.0-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.14.0-1+b2) ... Setting up libde265-0:amd64 (1.0.15-1+b1) ... Setting up valgrind (1:3.20.0-2.1) ... Setting up libgfortran-13-dev:amd64 (13.2.0-25) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up python3-wheel-whl (0.43.0-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libyuv0:amd64 (0.0.1888.20240509-4) ... Setting up valgrind-mpi (1:3.20.0-2.1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:amd64 (72.1-4+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Setting up libtrilinos-trilinosss-dev:amd64 (13.2.0-6) ... Setting up chrpath (0.16-2+b1) ... Setting up libblas-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.17.0-2) ... Setting up gettext (0.21-14+b1) ... Setting up libarpack2t64:amd64 (3.9.1-1.1+b1) ... Setting up libamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxau-dev:amd64 (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3) ... Setting up libyaml-dev:amd64 (0.2.5-1+b1) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-3) ... Setting up libtool (2.4.7-7) ... Setting up libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libspex3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxcb-render0:amd64 (1.17.0-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.7.0+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up libedit2:amd64 (3.1-20240517-1) ... Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libpugixml-dev:amd64 (1.14-0.1+b1) ... Setting up libaec-dev:amd64 (1.1.3-1) ... Setting up libcxsparse4:amd64 (1:7.7.0+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3) ... Setting up libxcb-shm0:amd64 (1.17.0-2) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3) ... Setting up libsuperlu6:amd64 (6.0.1+dfsg1-1+b1) ... Setting up gfortran-13-x86-64-linux-gnu (13.2.0-25) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up libcamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up pkgconf:amd64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.18-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libllvm16t64:amd64 (1:16.0.6-27) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-7+b1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.2-3+b1) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-3) ... Setting up libllvm17t64:amd64 (1:17.0.6-12) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up gfortran-13 (13.2.0-25) ... Setting up librbio4:amd64 (1:7.7.0+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3) ... Setting up opencl-clhpp-headers (3.0~2023.12.14-1) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3) ... Setting up pkg-config:amd64 (1.8.1-1+b2) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libjs-sphinxdoc (7.2.6-8) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b1) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10) ... Setting up libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:amd64 (2.42.2-9+b1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up libnl-3-dev:amd64 (3.7.0-0.3) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up libbasix0.8:amd64 (0.8.0-7) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libhwloc-dev:amd64 (2.10.0-1+b1) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libsuperlu-dev:amd64 (6.0.1+dfsg1-1+b1) ... Setting up libbasix-dev:amd64 (0.8.0-7) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up libarchive13t64:amd64 (3.7.2-2.1) ... Setting up libfftw3-dev:amd64 (3.3.10-1+b2) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-3) ... Setting up libibverbs1:amd64 (50.0-2+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.0.4-3) ... Setting up libcholmod5:amd64 (1:7.7.0+dfsg-2) ... Setting up libarpack2-dev:amd64 (3.9.1-1.1+b1) ... Setting up libxcb1-dev:amd64 (1.17.0-2) ... Setting up libzmq5:amd64 (4.3.5-1+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:amd64 (8.8.0-1) ... Setting up ibverbs-providers:amd64 (50.0-2+b1) ... Setting up libspqr4:amd64 (1:7.7.0+dfsg-2) ... Setting up python3-pip-whl (24.0+dfsg-2) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3) ... Setting up openssh-client (1:9.7p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up nanobind-dev (2.0.0-2) ... Setting up libpango-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libclang1-16t64 (1:16.0.6-27) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libclang-cpp16t64 (1:16.0.6-27) ... Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1) ... Setting up libpython3.12t64:amd64 (3.12.3-1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.3) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libcurl4-openssl-dev:amd64 (8.8.0-1) ... Setting up libklu2:amd64 (1:7.7.0+dfsg-2) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up sphinx-common (7.2.6-8) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libevent-dev (2.1.12-stable-10) ... Setting up libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Setting up cmake (3.29.4-1) ... Setting up librdmacm1t64:amd64 (50.0-2+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up libpython3-dev:amd64 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libadios2-mpi-auxiliary-2:amd64 (2.9.2+dfsg1-13+b1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up libparu0:amd64 (1:7.7.0+dfsg-2) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:amd64 (3.12.3-1) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up python3-distlib (0.3.8-1) ... Setting up python-petsc4py-doc (3.20.5-3) ... Setting up libibverbs-dev:amd64 (50.0-2+b1) ... Setting up libhwloc-plugins:amd64 (2.10.0-1+b1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyproject-hooks (1.1.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up libadios2-mpi-auxiliary-dev:amd64 (2.9.2+dfsg1-13+b1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up libpython3-all-dev:amd64 (3.11.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2.1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up python3-typing-extensions (4.12.0-1) ... Setting up libpmix2t64:amd64 (5.0.2-3) ... Setting up python3-pip (24.0+dfsg-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-fastjsonschema (2.19.1-1) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up python3-traitlets (5.5.0-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.1-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pusimp (0.1.0-3) ... Setting up python3-jupyter-core (5.3.2-2) ... Setting up libpmix-dev:amd64 (5.0.2-3) ... Setting up python3-cffi-backend:amd64 (1.16.0-2+b2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-8) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-nanobind (2.0.0-2) ... Setting up python3-filelock (3.14.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libsuitesparse-dev:amd64 (1:7.7.0+dfsg-2) ... Setting up python3-pyproject-metadata (0.8.0-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.1.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-ply (3.11-6) ... Setting up python3-mdit-py-plugins (0.4.1-1) ... Setting up python3-virtualenv (20.26.2+ds-1) ... Setting up python3-all (3.11.8-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.12.3-3.1) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-pycparser (2.22-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-2) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up libucx0:amd64 (1.16.0+ds-5) ... Setting up python3-scipy (1.12.0-2) ... Setting up python3-ufl (2024.1.0-1) ... Setting up python3-scikit-build-core (0.9.4-1) ... Setting up pybuild-plugin-pyproject (6.20240422) ... Setting up python3-cffi (1.16.0-2) ... Setting up libopenmpi3t64:amd64 (4.1.6-13.3) ... Setting up libparpack2t64:amd64 (3.9.1-1.1+b1) ... Setting up libboost-mpi1.83.0 (1.83.0-3) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up openmpi-bin (4.1.6-13.3) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-basix (0.8.0-7) ... Setting up libptscotch-7.0:amd64 (7.0.4-2) ... Setting up mpi-default-bin (1.15) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-3.1+b1) ... Setting up libfftw3-mpi3:amd64 (3.3.10-1+b2) ... Setting up python3-mpi4py (3.1.6-1) ... Setting up libtrilinos-zoltan-13.2:amd64 (13.2.0-6) ... Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up python3-ffcx (1:0.8.0-1) ... Setting up libtrilinos-teuchos-13.2:amd64 (13.2.0-6) ... Setting up python3-jsonschema (4.19.2-3) ... Setting up libtrilinos-epetra-13.2:amd64 (13.2.0-6) ... Setting up libtrilinos-zoltan-dev:amd64 (13.2.0-6) ... Setting up libtrilinos-aztecoo-13.2:amd64 (13.2.0-6) ... Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-3.3) ... Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libtrilinos-aztecoo-dev:amd64 (13.2.0-6) ... Setting up libopenmpi-dev:amd64 (4.1.6-13.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libtrilinos-triutils-13.2:amd64 (13.2.0-6) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1) ... Setting up libadios2-mpi-core-2:amd64 (2.9.2+dfsg1-13+b1) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-1+b2) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-1+b2) ... Setting up libadios2-mpi-core-dev:amd64 (2.9.2+dfsg1-13+b1) ... Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3-nbformat (5.9.1-1) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-1+b2) ... Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3-jupytext (1.16.1+ds1-2) ... Setting up libadios2-mpi-c++11-2:amd64 (2.9.2+dfsg1-13+b1) ... Setting up libmumps-5.6t64:amd64 (5.6.2-2.1+b1) ... Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-6) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-3.1) ... Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-6) ... Setting up mpi-default-dev (1.15) ... Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-6) ... Setting up libpetsc-complex3.20:amd64 (3.20.6+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode Setting up libscalapack-mpi-dev:amd64 (2.2.1-3.1) ... Setting up libhdf5-openmpi-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre-2.29.0:amd64 (2.29.0-2) ... Setting up libmumps-dev:amd64 (5.6.2-2.1+b1) ... Setting up libscotch-dev (7.0.4-2) ... Setting up libadios2-mpi-c++11-dev:amd64 (2.9.2+dfsg1-13+b1) ... Setting up libparpack2-dev:amd64 (3.9.1-1.1+b1) ... Setting up libhypre-dev:amd64 (2.29.0-2) ... Setting up libptscotch-dev (7.0.4-2) ... Setting up libboost-mpi1.83-dev (1.83.0-3) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libslepc-complex3.20 (3.20.2+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_complex.so.3.20.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-6) ... Setting up libhdf5-mpi-dev (1.10.10+repack-3.3) ... Setting up python3-petsc4py-complex3.20 (3.20.5-3) ... Setting up python3-petsc4py (3.20.5-3) ... Setting up python3-slepc4py-complex3.20 (3.20.2-1) ... Setting up libtrilinos-ml-13.2:amd64 (13.2.0-6) ... Setting up libpetsc3.20-dev-common (3.20.6+dfsg1-1) ... Setting up libtrilinos-ml-dev:amd64 (13.2.0-6) ... Setting up libpetsc-real3.20:amd64 (3.20.6+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode Setting up python3-petsc4py-complex (3.20.5-3) ... Setting up python3-slepc4py-complex (3.20.2-1) ... Setting up libpetsc-complex3.20-dev:amd64 (3.20.6+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_complex.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc_complex.so (libpetsc_complex.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode Setting up libpetsc-complex-dev (3.20.6+dfsg1-1) ... Setting up python3-slepc4py (3.20.2-1) ... Setting up libslepc-complex3.20-dev (3.20.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_complex.so.3.20.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_complex.so (libslepc_complex.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode Setting up libslepc-real3.20 (3.20.2+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode Setting up python3-petsc4py-real3.20 (3.20.5-3) ... Setting up libpetsc-real3.20-dev:amd64 (3.20.6+dfsg1-1) ... update-alternatives: using /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode Setting up libslepc-complex-dev (3.20.2+dfsg1-2) ... Setting up python3-slepc4py-real3.20 (3.20.2-1) ... Setting up libslepc-real3.20-dev (3.20.2+dfsg1-2) ... update-alternatives: using /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode Setting up libpetsc-real-dev (3.20.6+dfsg1-1) ... Setting up python3-slepc4py-real (3.20.2-1) ... Setting up libslepc-real-dev (3.20.2+dfsg1-2) ... Setting up python3-petsc4py-real (3.20.5-3) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up libgvc6 (2.42.2-9+b1) ... Setting up graphviz (2.42.2-9+b1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-12) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-8) ... Setting up python3-myst-parser (3.0.1-1) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-rtd-theme (2.0.0+dfsg-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fenics-dolfinx-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenics-dolfinx_0.8.0-9_source.changes dpkg-buildpackage: info: source package fenics-dolfinx dpkg-buildpackage: info: source version 1:0.8.0-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --with python3,sphinxdoc debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_auto_clean --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real dh_auto_clean --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex rm -rf python/build-real python/build-complex rm -rf debian/tmp-real debian/tmp-complex rm -rf python/fenics_dolfinx.egg-info rm -rf python/doc/build python/doc/source/generated rm -rf cpp/doc/latex cpp/doc/html cpp/doc/xml rm -f /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/demos make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real dh_auto_configure --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real -D/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-9 cd obj-x86_64-linux-gnu-real && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-9 ../cpp -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Checking for basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Asking Python module FFCx for location of UFC... (Python executable: /usr/bin/python3) -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.8.0", minimum required is "0.8") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'OPTIONAL;PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Found PETSc version 3.20.6, prefix: /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real -- Checking for one of the modules 'slepc>=3.15' -- Found SLEPc version 3.20.2, prefix: /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.4) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * DOLFINX_UFCX_PYTHON, Enable UFCx discovery using Python. Disable if UFCx should be found using a CMake config file. -- The following OPTIONAL packages have been found: * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., IO, including in parallel -- The following RECOMMENDED packages have been found: * PETSc, Portable, Extensible Toolkit for Scientific Computation, Linear and nonlinear solvers * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * pugixml * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix (required version >= 0.8) * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.8), Interface for form-compilers (part of FFCx), * PkgConfig * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- Configuring done (14.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS DOLFINX_EXTRA_CXX_FLAGS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex dh_auto_configure --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex -D/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFINX_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-9 cd obj-x86_64-linux-gnu-complex && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFINX_ENABLE_TRILINOS:BOOL=OFF -D DOLFINX_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFINX_ENABLE_PARMETIS:BOOL=OFF -D DOLFINX_ENABLE_SCOTCH:BOOL=ON -D DOLFINX_ENABLE_DOCS:BOOL=OFF -D DOLFINX_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFINX_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" -D DEBIAN_VERSION_ID=debian_1:0.8.0-9 ../cpp -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found suitable version "3.1", minimum required is "3") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3") -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Checking for basix hints with /usr/bin/python3 -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Asking Python module FFCx for location of UFC... (Python executable: /usr/bin/python3) -- Found UFCx: /usr/lib/python3/dist-packages/ffcx/codegeneration (found suitable version "0.8.0", minimum required is "0.8") -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'OPTIONAL;PETSc>=3.15;petsc>=3.15' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Found PETSc version 3.20.6, prefix: /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex -- Checking for one of the modules 'slepc>=3.15' -- Found SLEPc version 3.20.2, prefix: /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 7.0.4) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/x86_64-linux-gnu/libptscotch.so;/usr/lib/x86_64-linux-gnu/libscotch.so;/usr/lib/x86_64-linux-gnu/libptscotcherr.so -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFINx with shared libraries. * DOLFINX_UFCX_PYTHON, Enable UFCx discovery using Python. Disable if UFCx should be found using a CMake config file. -- The following OPTIONAL packages have been found: * ADIOS2 (required version >= 2.8.1), Adaptable Input/Output (I/O) System., IO, including in parallel -- The following RECOMMENDED packages have been found: * PETSc, Portable, Extensible Toolkit for Scientific Computation, Linear and nonlinear solvers * SLEPc, Scalable Library for Eigenvalue Problem Computations, Eigenvalue computation -- The following REQUIRED packages have been found: * MPI (required version >= 3) * pugixml * boost_headers (required version == 1.83.0) * boost_timer (required version == 1.83.0) * Boost (required version >= 1.70), Boost C++ libraries, * Basix (required version >= 0.8) * HDF5, Hierarchical Data Format 5 (HDF5), * Python3 * UFCx (required version >= 0.8), Interface for form-compilers (part of FFCx), * PkgConfig * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Parallel graph partitioning -- The following features have been disabled: * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- Configuring done (13.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY DOLFINX_ENABLE_DOCS DOLFINX_ENABLE_HDF5 DOLFINX_ENABLE_MPI DOLFINX_ENABLE_TRILINOS DOLFINX_EXTRA_CXX_FLAGS FETCHCONTENT_FULLY_DISCONNECTED MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real cd obj-x86_64-linux-gnu-real && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' [ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.cpp [ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.8.0-9\" -DUFCX_SIGNATURE=\"ea06373d6123e47e4a3c75d92f167503ae508922\" -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.cpp [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.cpp [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.cpp [ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.cpp [ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o [ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi 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-I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o -MF CMakeFiles/dolfinx.dir/common/timing.cpp.o.d -o CMakeFiles/dolfinx.dir/common/timing.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/timing.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DirichletBC.cpp [ 25%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -MF CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.cpp [ 27%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o [ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -MF CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.cpp [ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o [ 34%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS 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dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/fem/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.cpp [ 39%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.cpp [ 41%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.cpp [ 44%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.cpp [ 46%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.cpp [ 51%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -MF CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o.d -o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.cpp [ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -MF CMakeFiles/dolfinx.dir/io/cells.cpp.o.d -o CMakeFiles/dolfinx.dir/io/cells.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.cpp [ 55%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.cpp [ 60%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd 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/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o -MF CMakeFiles/dolfinx.dir/la/slepc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/slepc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.cpp [ 79%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Topology.cpp [ 81%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c 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-isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.cpp [ 93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.cpp [ 95%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.cpp [ 97%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_real.so cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libdolfinx_real.so.0.8 -o libdolfinx_real.so.0.8.0 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_real.so.0.8.0 libdolfinx_real.so.0.8 libdolfinx_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' [100%] Built target dolfinx make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex cd obj-x86_64-linux-gnu-complex && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx/CMakeFiles/dolfinx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' [ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o [ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o [ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o [ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o [ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o [ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o [ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o [ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.cpp [ 23%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o [ 27%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o [ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o [ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.8.0-9\" -DUFCX_SIGNATURE=\"ea06373d6123e47e4a3c75d92f167503ae508922\" -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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/usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -MF CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.cpp [ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o [ 34%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB 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dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o [ 39%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -MF CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.cpp [ 41%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/utils.cpp.o -MF CMakeFiles/dolfinx.dir/fem/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.cpp [ 44%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partitioners.cpp [ 46%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.cpp [ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.cpp [ 51%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -MF CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o.d -o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.cpp [ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -MF CMakeFiles/dolfinx.dir/io/cells.cpp.o.d -o CMakeFiles/dolfinx.dir/io/cells.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.cpp [ 55%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.cpp [ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.cpp [ 60%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.cpp [ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/XDMFFile.cpp [ 65%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_function.cpp [ 67%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_mesh.cpp [ 69%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_utils.cpp [ 72%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.cpp [ 74%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/petsc.cpp.o -MF CMakeFiles/dolfinx.dir/la/petsc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/petsc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.cpp [ 76%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/la/slepc.cpp.o -MF CMakeFiles/dolfinx.dir/la/slepc.cpp.o.d -o CMakeFiles/dolfinx.dir/la/slepc.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.cpp [ 79%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC 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CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.cpp [ 83%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include 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/usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/permutationcomputation.cpp [ 88%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/topologycomputation.cpp [ 90%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && 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93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.cpp [ 95%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.cpp [ 97%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.cpp [100%] Linking CXX shared library libdolfinx_complex.so cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libdolfinx_complex.so.0.8 -o libdolfinx_complex.so.0.8.0 CMakeFiles/dolfinx.dir/common/defines.cpp.o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o CMakeFiles/dolfinx.dir/common/log.cpp.o CMakeFiles/dolfinx.dir/common/MPI.cpp.o CMakeFiles/dolfinx.dir/common/Table.cpp.o CMakeFiles/dolfinx.dir/common/Timer.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o CMakeFiles/dolfinx.dir/common/timing.cpp.o CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o CMakeFiles/dolfinx.dir/fem/petsc.cpp.o CMakeFiles/dolfinx.dir/fem/sparsitybuild.cpp.o CMakeFiles/dolfinx.dir/fem/utils.cpp.o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o CMakeFiles/dolfinx.dir/graph/partitioners.cpp.o CMakeFiles/dolfinx.dir/graph/partition.cpp.o CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o CMakeFiles/dolfinx.dir/io/cells.cpp.o CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_mesh.cpp.o CMakeFiles/dolfinx.dir/io/xdmf_utils.cpp.o CMakeFiles/dolfinx.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfinx.dir/la/petsc.cpp.o CMakeFiles/dolfinx.dir/la/slepc.cpp.o CMakeFiles/dolfinx.dir/mesh/Topology.cpp.o CMakeFiles/dolfinx.dir/mesh/cell_types.cpp.o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/topologycomputation.cpp.o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o CMakeFiles/dolfinx.dir/refinement/utils.cpp.o /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libptscotch.so /usr/lib/x86_64-linux-gnu/libscotch.so /usr/lib/x86_64-linux-gnu/libptscotcherr.so /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/cmake -E cmake_symlink_library libdolfinx_complex.so.0.8.0 libdolfinx_complex.so.0.8 libdolfinx_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' [100%] Built target dolfinx make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' echo "Tests must be run after installation" Tests must be run after installation make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_auto_install --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real --destdir=debian/tmp-real cd obj-x86_64-linux-gnu-real && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8 -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/defines.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/dolfinx_common.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/dolfinx_doc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/log.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/sort.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/math.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/MPI.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/Scatterer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/Table.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/Timer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/timing.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/Constant.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/Expression.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/Form.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/Function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/assembler.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/dolfinx_fem.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/traits.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/fem/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/geometry/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/graph/dolfinx_graph.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/graph/ordering.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/graph/partition.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/dolfinx_io.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/cells.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/dolfinx_la.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/matrix_csr_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/Vector.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/la/slepc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/generation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/mesh/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/nls/dolfinx_nls.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/refinement/refine.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/refinement/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include/dolfinx/common/version.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' cp COPYING.LESSER python for build in real; do \ PATH=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ ADIOS2_ALWAYS_USE_MPI=1 \ PUSIMP_EXPECT_DOLFINX_IN_CWD=1 \ pybuild --dir=/build/reproducible-path/fenics-dolfinx-0.8.0/python --dest-dir=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build} --system=pyproject --name=dolfinx-${build} --test-pytest; \ done I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-real * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp0l3n0ugb/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter Development Development.Module Development.Embed -- Found Basix at /usr/lib/x86_64-linux-gnu/cmake/basix -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (8.7s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmp0l3n0ugb/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmp0l3n0ugb/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmp0l3n0ugb/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmp0l3n0ugb/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmp0l3n0ugb/build/CMakeFiles /tmp/tmp0l3n0ugb/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmp0l3n0ugb/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmp0l3n0ugb/build' cd /tmp/tmp0l3n0ugb/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmp0l3n0ugb/build /tmp/tmp0l3n0ugb/build /tmp/tmp0l3n0ugb/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" 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[ 44%] ........................................................................ [ 47%] ........................................................................ [ 50%] ...s............................. [ 51%] test/unit/fem/test_mixed_element.py ...................... [ 52%] test/unit/fem/test_mixed_mesh_dofmap.py .. [ 52%] test/unit/fem/test_nonlinear_assembler.py ...... [ 53%] test/unit/fem/test_petsc_discrete_operators.py ......................... [ 54%] ........................................................................ [ 57%] ................ [ 57%] test/unit/fem/test_quadrature_elements.py ................... [ 58%] test/unit/fem/test_special_functions.py ... [ 58%] test/unit/fem/test_symmetric_tensor.py ........ [ 59%] test/unit/fem/test_symmetry.py ......................................... [ 61%] ....................................................... [ 63%] test/unit/fem/test_vector_assemble.py .. [ 63%] test/unit/fem/test_vector_function.py .......... 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[ 81%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 82%] test/unit/la/test_nullspace.py ........ [ 82%] test/unit/la/test_sparsity_pattern.py . [ 83%] test/unit/la/test_vector_scatter.py ........... [ 83%] test/unit/mesh/test_cell.py ... [ 83%] test/unit/mesh/test_dual_graph.py . [ 83%] test/unit/mesh/test_face.py s. [ 83%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 84%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 85%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 88%] .................. [ 89%] test/unit/mesh/test_manifold_point_search.py . [ 89%] test/unit/mesh/test_mesh.py ....................ss....s..............x.x [ 91%] .........x.x.........x.x.........x.x.........x.x.........x.x.........x.x [ 94%] .........x.x............................................................ [ 97%] .......... [ 97%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss....... [ 98%] test/unit/mesh/test_meshtags.py ... [ 99%] test/unit/mesh/test_mixed_topology.py .... [ 99%] test/unit/mesh/test_refinement.py ............... [ 99%] test/unit/nls/test_newton.py ... [100%] =============================== warnings summary =============================== test/unit/fem/test_assembler.py: 16 warnings test/unit/fem/test_expression.py: 4 warnings test/unit/fem/test_fem_pipeline.py: 14 warnings test/unit/fem/test_interpolation.py: 8 warnings test/unit/fem/test_mixed_element.py: 24 warnings test/unit/fem/test_nonlinear_assembler.py: 16 warnings test/unit/fem/test_symmetric_tensor.py: 4 warnings test/unit/fem/test_symmetry.py: 96 warnings /usr/lib/python3/dist-packages/ufl/core/expr.py:264: DeprecationWarning: Expr.ufl_domain() is deprecated, please use extract_unique_domain(expr) instead. warnings.warn( test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:48: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-real/build/../README.md' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-real/build/COPYING.LESSER' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/sandbox.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 49.85s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ] 38.65s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] 36.91s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 32.05s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 30.20s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] 26.81s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 19.28s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge] 19.15s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 18.68s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] 18.26s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] 14.83s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] 14.74s call test/unit/fem/test_fem_pipeline.py::test_vector_S_tp[3-S-CellType.hexahedron] 14.57s call test/unit/fem/test_fem_pipeline.py::test_DPC_quad[2-DPC-CellType.quadrilateral] 14.54s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAE-CellType.hexahedron] 13.44s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] 13.36s call test/unit/fem/test_fem_pipeline.py::test_S_tp[4-S-CellType.hexahedron] 13.35s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAF-CellType.hexahedron] 13.06s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] 12.68s call test/unit/fem/test_dofmap.py::test_block_size 12.22s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] = 2178 passed, 95 skipped, 40 xfailed, 5 xpassed, 190 warnings in 3156.87s (0:52:36) = I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-real * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmp8iazdjh1/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.11 (found version "3.11.9") found components: Interpreter Development Development.Module Development.Embed -- Found Basix at /usr/lib/x86_64-linux-gnu/cmake/basix -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3.11 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (8.9s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmp8iazdjh1/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmp8iazdjh1/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmp8iazdjh1/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmp8iazdjh1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmp8iazdjh1/build/CMakeFiles /tmp/tmp8iazdjh1/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmp8iazdjh1/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmp8iazdjh1/build' cd /tmp/tmp8iazdjh1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmp8iazdjh1/build /tmp/tmp8iazdjh1/build /tmp/tmp8iazdjh1/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" 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-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.11 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared module cpp.cpython-311-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -Wl,-s -Wl,--gc-sections -Wl,-z,relro -shared -o cpp.cpython-311-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/petsc.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib: libnanobind-static.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so gmake[4]: Leaving directory '/tmp/tmp8iazdjh1/build' [100%] Built target cpp gmake[3]: Leaving directory '/tmp/tmp8iazdjh1/build' /usr/bin/cmake -E cmake_progress_start /tmp/tmp8iazdjh1/build/CMakeFiles 0 gmake[2]: Leaving directory '/tmp/tmp8iazdjh1/build' *** Installing project into wheel... -- Install configuration: "Release" -- Installing: /tmp/tmp8iazdjh1/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/tmp/tmp8iazdjh1/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib" *** Making wheel... *** Created fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl... Successfully built fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir I: pybuild base:311: cd /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-real/build; python3.11 -m pytest --durations=20 -k "" ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0 rootdir: /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-real/build configfile: pyproject.toml collected 2316 items / 2 skipped test/debian-only/test_pusimp.py .sss.. [ 0%] test/unit/common/test_index_map.py ....s [ 0%] test/unit/common/test_mpi.py .. [ 0%] test/unit/common/test_public_api.py s [ 0%] test/unit/common/test_timer.py .. [ 0%] test/unit/common/test_version.py . [ 0%] test/unit/fem/test_assemble_domains.py .......s.s. [ 1%] test/unit/fem/test_assemble_submesh.py ................................. [ 2%] ....................................... [ 4%] test/unit/fem/test_assembler.py ........................................ [ 6%] ................... [ 6%] test/unit/fem/test_bcs.py .................... [ 7%] test/unit/fem/test_complex_assembler.py .... [ 7%] test/unit/fem/test_constant.py ....... [ 8%] test/unit/fem/test_custom_basix_element.py ............................. [ 9%] x.x. [ 9%] test/unit/fem/test_discrete_operators.py ............................... [ 10%] ............................................. [ 12%] test/unit/fem/test_dof_coordinates.py ........ [ 13%] test/unit/fem/test_dof_permuting.py .................................... [ 14%] ........................................................................ [ 17%] ..................................ssssss [ 19%] test/unit/fem/test_dofmap.py ss.ss.ssss........ 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[ 44%] ........................................................................ [ 47%] ........................................................................ [ 50%] ...s............................. [ 51%] test/unit/fem/test_mixed_element.py ...................... [ 52%] test/unit/fem/test_mixed_mesh_dofmap.py .. [ 52%] test/unit/fem/test_nonlinear_assembler.py ...... [ 53%] test/unit/fem/test_petsc_discrete_operators.py ......................... [ 54%] ........................................................................ [ 57%] ................ [ 57%] test/unit/fem/test_quadrature_elements.py ................... [ 58%] test/unit/fem/test_special_functions.py ... [ 58%] test/unit/fem/test_symmetric_tensor.py ........ [ 59%] test/unit/fem/test_symmetry.py ......................................... [ 61%] ....................................................... [ 63%] test/unit/fem/test_vector_assemble.py .. [ 63%] test/unit/fem/test_vector_function.py .......... [ 63%] test/unit/geometry/test_bounding_box_tree.py ........................... [ 65%] ................................. [ 66%] test/unit/geometry/test_gjk.py ......................................... [ 68%] ...................... [ 69%] test/unit/graph/test_adjacencylist.py .. [ 69%] test/unit/io/test_adios2.py ............................................ [ 71%] .....ssssssss [ 71%] test/unit/io/test_vtk.py ....................... [ 72%] test/unit/io/test_xdmf_function.py ..................................... [ 74%] ...........................................s [ 76%] test/unit/io/test_xdmf_mesh.py ..........ss............................. [ 78%] ................................... [ 79%] test/unit/io/test_xdmf_meshdata.py .. [ 79%] test/unit/io/test_xdmf_meshtags.py .... [ 79%] test/unit/la/test_krylov_solver.py .s [ 79%] test/unit/la/test_matrix_csr.py ............................ [ 81%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 82%] test/unit/la/test_nullspace.py ........ [ 82%] test/unit/la/test_sparsity_pattern.py . [ 83%] test/unit/la/test_vector_scatter.py ........... [ 83%] test/unit/mesh/test_cell.py ... [ 83%] test/unit/mesh/test_dual_graph.py . [ 83%] test/unit/mesh/test_face.py s. [ 83%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 84%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 85%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 88%] .................. [ 89%] test/unit/mesh/test_manifold_point_search.py . [ 89%] test/unit/mesh/test_mesh.py ....................ss....s..............x.x [ 91%] .........x.x.........x.x.........x.x.........x.x.........x.x.........x.x [ 94%] .........x.x............................................................ [ 97%] .......... [ 97%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss....... [ 98%] test/unit/mesh/test_meshtags.py ... [ 99%] test/unit/mesh/test_mixed_topology.py .... [ 99%] test/unit/mesh/test_refinement.py ............... [ 99%] test/unit/nls/test_newton.py ... [100%] =============================== warnings summary =============================== test/unit/fem/test_assembler.py: 16 warnings test/unit/fem/test_expression.py: 4 warnings test/unit/fem/test_fem_pipeline.py: 14 warnings test/unit/fem/test_interpolation.py: 8 warnings test/unit/fem/test_mixed_element.py: 24 warnings test/unit/fem/test_nonlinear_assembler.py: 16 warnings test/unit/fem/test_symmetric_tensor.py: 4 warnings test/unit/fem/test_symmetry.py: 96 warnings /usr/lib/python3/dist-packages/ufl/core/expr.py:264: DeprecationWarning: Expr.ufl_domain() is deprecated, please use extract_unique_domain(expr) instead. warnings.warn( test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:48: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-real/build/../README.md' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-real/build/COPYING.LESSER' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/sandbox.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 26.06s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] 19.06s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] 14.67s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] 12.74s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] 12.52s call test/unit/fem/test_element_integrals.py::test_facet_integral[complex64-CellType.hexahedron] 12.06s call test/unit/fem/test_element_integrals.py::test_facet_normals[float64-CellType.hexahedron] 11.61s call test/unit/fem/test_dofmap.py::test_block_size 11.33s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 11.16s call test/unit/fem/test_element_integrals.py::test_facet_integral[complex128-CellType.hexahedron] 11.14s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 10.86s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.hexahedron] 8.88s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex64-CellType.hexahedron] 8.26s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.tetrahedron] 8.02s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] 7.77s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 7.71s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] 7.40s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.quadrilateral] 7.17s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAE] 6.96s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.quadrilateral] 6.92s call test/unit/fem/test_element_integrals.py::test_plus_minus[float64-CellType.hexahedron-DG] = 2178 passed, 95 skipped, 40 xfailed, 5 xpassed, 190 warnings in 2231.67s (0:37:11) = dh_auto_install -a --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8 -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_common.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_doc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfinx_fem.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/traits.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfinx_graph.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/dolfinx_io.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/dolfinx_la.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/matrix_csr_impl.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfinx_nls.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' cp COPYING.LESSER python dh_numpy3 -a for build in complex; do \ PATH=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build}/usr/bin:$PATH \ PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-${build} \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build}/usr/include" \ VERBOSE=1 \ PUSIMP_EXPECT_DOLFINX_IN_CWD=1 \ pybuild --dir=/build/reproducible-path/fenics-dolfinx-0.8.0/python --dest-dir=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build} --system=pyproject --name=dolfinx-${build} --test-pytest; \ done I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-complex * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpyc2ntrwa/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter Development Development.Module Development.Embed -- Found Basix at /usr/lib/x86_64-linux-gnu/cmake/basix -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3.12 (found version "3.12.3") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (7.1s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpyc2ntrwa/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmpyc2ntrwa/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmpyc2ntrwa/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmpyc2ntrwa/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmpyc2ntrwa/build/CMakeFiles /tmp/tmpyc2ntrwa/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmpyc2ntrwa/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmpyc2ntrwa/build' cd /tmp/tmpyc2ntrwa/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpyc2ntrwa/build /tmp/tmpyc2ntrwa/build /tmp/tmpyc2ntrwa/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" 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[ 98%] test/unit/mesh/test_meshtags.py ... [ 99%] test/unit/mesh/test_mixed_topology.py .... [ 99%] test/unit/mesh/test_refinement.py ............... [ 99%] test/unit/nls/test_newton.py ... [100%] =============================== warnings summary =============================== test/unit/fem/test_assembler.py: 16 warnings test/unit/fem/test_expression.py: 4 warnings test/unit/fem/test_interpolation.py: 8 warnings test/unit/fem/test_mixed_element.py: 24 warnings test/unit/fem/test_nonlinear_assembler.py: 16 warnings test/unit/fem/test_symmetric_tensor.py: 4 warnings test/unit/fem/test_symmetry.py: 96 warnings /usr/lib/python3/dist-packages/ufl/core/expr.py:264: DeprecationWarning: Expr.ufl_domain() is deprecated, please use extract_unique_domain(expr) instead. warnings.warn( test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:48: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-complex/build/../README.md' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-complex/build/COPYING.LESSER' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/sandbox.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) test/unit/fem/test_quadrature_elements.py::test_vector_element[shape0] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape1] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape2] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape3] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape4] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape5] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape6] /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.12_dolfinx-complex/build/test/unit/fem/test_quadrature_elements.py:134: ComplexWarning: Casting complex values to real discards the imaginary part diag[bs * row + block] = mat.data[bs**2 * i + (bs + 1) * block] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 33.96s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] 18.88s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] 15.39s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.tetrahedron] 13.96s call test/unit/la/test_nullspace.py::test_nullspace_check[2-mesh1] 13.66s call test/unit/fem/test_dofmap.py::test_block_size 13.09s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 12.30s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] 11.80s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] 10.73s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 9.78s call test/unit/la/test_nullspace.py::test_nullspace_check[1-mesh1] 9.27s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] 9.07s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] 9.05s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] 8.52s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] 8.10s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] 7.77s call test/unit/fem/test_fem_pipeline.py::test_vector_P_simplex[3-Lagrange-CellType.tetrahedron] 7.75s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] 7.36s call test/unit/fem/test_fem_pipeline.py::test_RT_N1curl_simplex[3-N1curl-CellType.tetrahedron] 7.25s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 7.22s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.triangle] = 2176 passed, 97 skipped, 40 xfailed, 5 xpassed, 183 warnings in 2444.85s (0:40:44) = I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpotna123g/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.11 (found version "3.11.9") found components: Interpreter Development Development.Module Development.Embed -- Found Basix at /usr/lib/x86_64-linux-gnu/cmake/basix -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3.11 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done (19.9s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpotna123g/build *** Building project with Unix Makefiles... Change Dir: '/tmp/tmpotna123g/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile gmake[2]: Entering directory '/tmp/tmpotna123g/build' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmpotna123g/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /tmp/tmpotna123g/build/CMakeFiles /tmp/tmpotna123g/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[3]: Entering directory '/tmp/tmpotna123g/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend gmake[4]: Entering directory '/tmp/tmpotna123g/build' cd /tmp/tmpotna123g/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpotna123g/build /tmp/tmpotna123g/build /tmp/tmpotna123g/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" 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-I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp [ 16%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp [ 25%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp [ 29%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp [ 33%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp [ 37%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 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-I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.11 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/python/dolfinx/wrappers/refinement.cpp [100%] Linking CXX shared module cpp.cpython-311-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -Wl,-s -Wl,--gc-sections -Wl,-z,relro -shared -o cpp.cpython-311-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/petsc.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib: libnanobind-static.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so gmake[4]: Leaving directory '/tmp/tmpotna123g/build' [100%] Built target cpp gmake[3]: Leaving directory '/tmp/tmpotna123g/build' /usr/bin/cmake -E cmake_progress_start /tmp/tmpotna123g/build/CMakeFiles 0 gmake[2]: Leaving directory '/tmp/tmpotna123g/build' *** Installing project into wheel... -- Install configuration: "Release" -- Installing: /tmp/tmpotna123g/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so -- Set non-toolchain portion of runtime path of "/tmp/tmpotna123g/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib" *** Making wheel... *** Created fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl... Successfully built fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir I: pybuild base:311: cd /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex/build; python3.11 -m pytest --durations=20 -k "" ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0 rootdir: /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex/build configfile: pyproject.toml collected 2316 items / 2 skipped test/debian-only/test_pusimp.py .sss.. [ 0%] test/unit/common/test_index_map.py ....s [ 0%] test/unit/common/test_mpi.py .. [ 0%] test/unit/common/test_public_api.py s [ 0%] test/unit/common/test_timer.py .. [ 0%] test/unit/common/test_version.py . [ 0%] test/unit/fem/test_assemble_domains.py .......s.s. [ 1%] test/unit/fem/test_assemble_submesh.py ................................. [ 2%] ....................................... [ 4%] test/unit/fem/test_assembler.py ........................................ [ 6%] ................... [ 6%] test/unit/fem/test_bcs.py .................... [ 7%] test/unit/fem/test_complex_assembler.py .... [ 7%] test/unit/fem/test_constant.py ....... [ 8%] test/unit/fem/test_custom_basix_element.py ............................. [ 9%] x.x. [ 9%] test/unit/fem/test_discrete_operators.py ............................... [ 10%] ............................................. [ 12%] test/unit/fem/test_dof_coordinates.py ........ [ 13%] test/unit/fem/test_dof_permuting.py .................................... [ 14%] ........................................................................ [ 17%] ..................................ssssss [ 19%] test/unit/fem/test_dofmap.py ss.ss.ssss........ [ 20%] test/unit/fem/test_element_integrals.py ................................ [ 21%] ........................................................................ [ 24%] ........................................................................ [ 28%] ........................................................................ [ 31%] ................................ssssssssssssssss........................ [ 34%] [ 34%] test/unit/fem/test_expression.py ............................ [ 35%] test/unit/fem/test_fem_pipeline.py ..ss.....s...........s............... [ 37%] ..s.s.......s.............................s......................s...... [ 40%] ........................ [ 41%] test/unit/fem/test_forms.py . [ 41%] test/unit/fem/test_function.py ............ [ 41%] test/unit/fem/test_function_space.py ............. [ 42%] test/unit/fem/test_ghost_mesh_assembly.py ..X..X [ 42%] test/unit/fem/test_interpolation.py .................................... [ 44%] ........................................................................ [ 47%] ........................................................................ [ 50%] ...s............................. [ 51%] test/unit/fem/test_mixed_element.py ...................... [ 52%] test/unit/fem/test_mixed_mesh_dofmap.py .. [ 52%] test/unit/fem/test_nonlinear_assembler.py ...... [ 53%] test/unit/fem/test_petsc_discrete_operators.py ......................... [ 54%] ........................................................................ [ 57%] ................ [ 57%] test/unit/fem/test_quadrature_elements.py ................... [ 58%] test/unit/fem/test_special_functions.py ... [ 58%] test/unit/fem/test_symmetric_tensor.py ........ [ 59%] test/unit/fem/test_symmetry.py ......................................... [ 61%] ....................................................... [ 63%] test/unit/fem/test_vector_assemble.py .. [ 63%] test/unit/fem/test_vector_function.py .......... [ 63%] test/unit/geometry/test_bounding_box_tree.py ........................... [ 65%] ................................. [ 66%] test/unit/geometry/test_gjk.py ......................................... [ 68%] ...................... [ 69%] test/unit/graph/test_adjacencylist.py .. [ 69%] test/unit/io/test_adios2.py ............................................ [ 71%] .....ssssssss [ 71%] test/unit/io/test_vtk.py ....................... [ 72%] test/unit/io/test_xdmf_function.py ..................................... [ 74%] ...........................................s [ 76%] test/unit/io/test_xdmf_mesh.py ..........ss............................. [ 78%] ................................... [ 79%] test/unit/io/test_xdmf_meshdata.py .. [ 79%] test/unit/io/test_xdmf_meshtags.py .... [ 79%] test/unit/la/test_krylov_solver.py .s [ 79%] test/unit/la/test_matrix_csr.py ............................ [ 81%] test/unit/la/test_matrix_vector.py ............xxx....xxx....xxxxxxxxxx [ 82%] test/unit/la/test_nullspace.py ........ [ 82%] test/unit/la/test_sparsity_pattern.py . [ 83%] test/unit/la/test_vector_scatter.py ........... [ 83%] test/unit/mesh/test_cell.py ... [ 83%] test/unit/mesh/test_dual_graph.py . [ 83%] test/unit/mesh/test_face.py s. [ 83%] test/unit/mesh/test_ghost_mesh.py X..X...X [ 84%] test/unit/mesh/test_higher_order_mesh.py ............................... [ 85%] ....................x...x..........xx..xx.......ssssssssssssssssssssssss [ 88%] .................. [ 89%] test/unit/mesh/test_manifold_point_search.py . [ 89%] test/unit/mesh/test_mesh.py ....................ss....s..............x.x [ 91%] .........x.x.........x.x.........x.x.........x.x.........x.x.........x.x [ 94%] .........x.x............................................................ [ 97%] .......... [ 97%] test/unit/mesh/test_mesh_partitioners.py ..ss..ss..ss..ss....... [ 98%] test/unit/mesh/test_meshtags.py ... [ 99%] test/unit/mesh/test_mixed_topology.py .... [ 99%] test/unit/mesh/test_refinement.py ............... [ 99%] test/unit/nls/test_newton.py ... [100%] =============================== warnings summary =============================== test/unit/fem/test_assembler.py: 16 warnings test/unit/fem/test_expression.py: 4 warnings test/unit/fem/test_interpolation.py: 8 warnings test/unit/fem/test_mixed_element.py: 24 warnings test/unit/fem/test_nonlinear_assembler.py: 16 warnings test/unit/fem/test_symmetric_tensor.py: 4 warnings test/unit/fem/test_symmetry.py: 96 warnings /usr/lib/python3/dist-packages/ufl/core/expr.py:264: DeprecationWarning: Expr.ufl_domain() is deprecated, please use extract_unique_domain(expr) instead. warnings.warn( test/unit/fem/test_expression.py::test_facet_expression[complex64] test/unit/fem/test_expression.py::test_facet_expression[complex128] /usr/lib/python3/dist-packages/ffcx/element_interface.py:48: ComplexWarning: Casting complex values to real discards the imaginary part return np.asarray( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex/build/../README.md' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] test/unit/fem/test_function.py::test_cffi_expression[float64-double] /usr/lib/python3/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex/build/COPYING.LESSER' cannot be found return '\n'.join( test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/setuptools/sandbox.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources test/unit/fem/test_function.py::test_cffi_expression[float32-float] /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) test/unit/fem/test_quadrature_elements.py::test_vector_element[shape0] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape1] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape2] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape3] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape4] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape5] test/unit/fem/test_quadrature_elements.py::test_vector_element[shape6] /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex/build/test/unit/fem/test_quadrature_elements.py:134: ComplexWarning: Casting complex values to real discards the imaginary part diag[bs * row + block] = mat.data[bs**2 * i + (bs + 1) * block] -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= 41.19s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] 34.83s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] 32.44s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] 30.63s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] 14.01s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] 13.47s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] 11.62s call test/unit/fem/test_fem_pipeline.py::test_S_tp[4-S-CellType.hexahedron] 11.34s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] 11.24s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[3-DQ-CellType.quadrilateral] 10.99s call test/unit/fem/test_fem_pipeline.py::test_vector_S_tp[3-S-CellType.hexahedron] 10.59s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[1-DQ-CellType.quadrilateral] 9.77s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] 9.62s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAE-CellType.hexahedron] 9.59s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] 9.47s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] 9.36s call test/unit/fem/test_dof_permuting.py::test_integral[1-hexahedron-AAE] 8.96s call test/unit/fem/test_fem_pipeline.py::test_DPC_quad[4-DPC-CellType.quadrilateral] 8.91s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] 8.89s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[2-DQ-CellType.quadrilateral] 8.64s call test/unit/fem/test_dofmap.py::test_block_size = 2176 passed, 97 skipped, 40 xfailed, 5 xpassed, 183 warnings in 2616.48s (0:43:36) = chrpath -d /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc sed -i "s|-DNDEBUG||g" /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc if [ "x" != "xno" ]; then \ case " mips64el hurd-i386 m68k sh4 " in \ *\ amd64\ *) echo "ALL tests have been disabled on amd64";; \ *) set -e; \ export CTEST_OUTPUT_ON_FAILURE=1; \ for build in real complex; do \ echo "== testing $build number build =="; \ builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-${build}; \ for mytest in test demo; do \ echo "running tests from $mytest for $build build"; \ testdir=${builddir}/run_${mytest}; \ mkdir -p $testdir; \ cd $testdir; \ if [ "x" != "x" ]; then echo "set(CTEST_CUSTOM_TESTS_IGNORE )" >> CTestCustom.cmake; fi; \ PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-${build} SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-${build} cmake -DCMAKE_MODULE_PATH=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DDOLFINX_DIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-${build}/usr/lib/x86_64-linux-gnu/cmake/dolfinx \ -DMPIEXEC_PARAMS:STRING="--oversubscribe" \ /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/${mytest}; \ make all VERBOSE=1; \ OMPI_ALLOW_RUN_AS_ROOT=1 OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 make test VERBOSE=1; \ done; \ cd /build/reproducible-path/fenics-dolfinx-0.8.0; \ done; \ esac; \ fi == testing real number build == running tests from test for real build -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Configuring done (6.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' [ 8%] Compile poisson.py using FFCx ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/poisson.py cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' [ 16%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/main.cpp [ 25%] Building CXX object CMakeFiles/unittests.dir/vector.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/vector.cpp.o -MF CMakeFiles/unittests.dir/vector.cpp.o.d -o CMakeFiles/unittests.dir/vector.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/vector.cpp [ 33%] Building CXX object CMakeFiles/unittests.dir/matrix.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/matrix.cpp.o -MF CMakeFiles/unittests.dir/matrix.cpp.o.d -o CMakeFiles/unittests.dir/matrix.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/matrix.cpp [ 41%] Building CXX object CMakeFiles/unittests.dir/io.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/io.cpp.o -MF CMakeFiles/unittests.dir/io.cpp.o.d -o CMakeFiles/unittests.dir/io.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/io.cpp [ 50%] Building CXX object CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -MF CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o.d -o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/sub_systems_manager.cpp [ 58%] Building CXX object CMakeFiles/unittests.dir/common/index_map.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/index_map.cpp.o -MF CMakeFiles/unittests.dir/common/index_map.cpp.o.d -o CMakeFiles/unittests.dir/common/index_map.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/index_map.cpp [ 66%] Building CXX object CMakeFiles/unittests.dir/common/sort.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/sort.cpp.o -MF CMakeFiles/unittests.dir/common/sort.cpp.o.d -o CMakeFiles/unittests.dir/common/sort.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/sort.cpp [ 75%] Building CXX object CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -MF CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o.d -o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/mesh/distributed_mesh.cpp [ 83%] Building CXX object CMakeFiles/unittests.dir/common/CIFailure.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/CIFailure.cpp.o -MF CMakeFiles/unittests.dir/common/CIFailure.cpp.o.d -o CMakeFiles/unittests.dir/common/CIFailure.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/CIFailure.cpp [ 91%] Building C object CMakeFiles/unittests.dir/poisson.c.o /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/poisson.c.o -MF CMakeFiles/unittests.dir/poisson.c.o.d -o CMakeFiles/unittests.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test/poisson.c [100%] Linking CXX executable unittests /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/vector.cpp.o CMakeFiles/unittests.dir/matrix.cpp.o CMakeFiles/unittests.dir/io.cpp.o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o CMakeFiles/unittests.dir/common/index_map.cpp.o CMakeFiles/unittests.dir/common/sort.cpp.o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o CMakeFiles/unittests.dir/common/CIFailure.cpp.o CMakeFiles/unittests.dir/poisson.c.o -o unittests -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /usr/lib/libCatch2Main.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' [100%] Built target unittests make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test Start 1: unittests 1/1 Test #1: unittests ........................ Passed 1.21 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 1.21 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' running tests from demo for real build -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- Configuring done (6.8s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel/CMakeFiles/demo_custom_kernel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 4%] Building CXX object custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o -MF CMakeFiles/demo_custom_kernel.dir/main.cpp.o.d -o CMakeFiles/demo_custom_kernel.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel/main.cpp [ 9%] Linking CXX executable demo_custom_kernel cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/custom_kernel && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_custom_kernel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_custom_kernel.dir/main.cpp.o -o demo_custom_kernel -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 9%] Built target demo_custom_kernel make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 13%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/poisson.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 18%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT poisson/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/main.cpp [ 22%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson/CMakeFiles/demo_poisson.dir/poisson.c.o -MF CMakeFiles/demo_poisson.dir/poisson.c.o.d -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson/poisson.c [ 27%] Linking CXX executable demo_poisson cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 27%] Built target demo_poisson make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 31%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/poisson.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 36%] Building CXX object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -MF CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/main.cpp [ 40%] Building C object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -MF CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free/poisson.c [ 45%] Linking CXX executable demo_poisson_matrix_free cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/poisson_matrix_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson_matrix_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -o demo_poisson_matrix_free -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 45%] Built target demo_poisson_matrix_free make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 50%] Compile hyperelasticity.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/hyperelasticity.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build.make hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 54%] Building CXX object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -MF CMakeFiles/demo_hyperelasticity.dir/main.cpp.o.d -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/main.cpp [ 59%] Building C object hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT hyperelasticity/CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -MF CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o.d -o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity/hyperelasticity.c [ 63%] Linking CXX executable demo_hyperelasticity cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/hyperelasticity && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_hyperelasticity.dir/main.cpp.o CMakeFiles/demo_hyperelasticity.dir/hyperelasticity.c.o -o demo_hyperelasticity -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 63%] Built target demo_hyperelasticity make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io/CMakeFiles/demo_interpolation-io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 68%] Building CXX object interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o -MF CMakeFiles/demo_interpolation-io.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation-io.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io/main.cpp [ 72%] Linking CXX executable demo_interpolation-io cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation-io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro "CMakeFiles/demo_interpolation-io.dir/main.cpp.o" -o demo_interpolation-io -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 72%] Built target demo_interpolation-io make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 77%] Building CXX object interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -MF CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes/main.cpp [ 81%] Linking CXX executable demo_interpolation_different_meshes cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/interpolation_different_meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation_different_meshes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -o demo_interpolation_different_meshes -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 81%] Built target demo_interpolation_different_meshes make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 86%] Compile biharmonic.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/biharmonic.py --scalar_type=float64 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [ 90%] Building CXX object biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/main.cpp [ 95%] Building C object biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -MF CMakeFiles/demo_biharmonic.dir/biharmonic.c.o.d -o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic/biharmonic.c [100%] Linking CXX executable demo_biharmonic cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/biharmonic && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_biharmonic.dir/main.cpp.o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -o demo_biharmonic -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' [100%] Built target demo_biharmonic make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo Start 1: demo_custom_kernel_mpi_2 1/21 Test #1: demo_custom_kernel_mpi_2 ..................... Passed 1.75 sec Start 2: demo_custom_kernel_mpi_3 2/21 Test #2: demo_custom_kernel_mpi_3 ..................... Passed 1.82 sec Start 3: demo_custom_kernel_serial 3/21 Test #3: demo_custom_kernel_serial .................... Passed 1.46 sec Start 4: demo_poisson_mpi_2 4/21 Test #4: demo_poisson_mpi_2 ........................... Passed 0.84 sec Start 5: demo_poisson_mpi_3 5/21 Test #5: demo_poisson_mpi_3 ........................... Passed 1.12 sec Start 6: demo_poisson_serial 6/21 Test #6: demo_poisson_serial .......................... Passed 0.83 sec Start 7: demo_poisson_matrix_free_mpi_2 7/21 Test #7: demo_poisson_matrix_free_mpi_2 ............... Passed 0.65 sec Start 8: demo_poisson_matrix_free_mpi_3 8/21 Test #8: demo_poisson_matrix_free_mpi_3 ............... Passed 0.72 sec Start 9: demo_poisson_matrix_free_serial 9/21 Test #9: demo_poisson_matrix_free_serial .............. Passed 0.70 sec Start 10: demo_hyperelasticity_mpi_2 10/21 Test #10: demo_hyperelasticity_mpi_2 ................... Passed 2.36 sec Start 11: demo_hyperelasticity_mpi_3 11/21 Test #11: demo_hyperelasticity_mpi_3 ................... Passed 3.81 sec Start 12: demo_hyperelasticity_serial 12/21 Test #12: demo_hyperelasticity_serial .................. Passed 1.99 sec Start 13: demo_interpolation-io_mpi_2 13/21 Test #13: demo_interpolation-io_mpi_2 .................. Passed 0.73 sec Start 14: demo_interpolation-io_mpi_3 14/21 Test #14: demo_interpolation-io_mpi_3 .................. Passed 0.78 sec Start 15: demo_interpolation-io_serial 15/21 Test #15: demo_interpolation-io_serial ................. Passed 0.76 sec Start 16: demo_interpolation_different_meshes_mpi_2 16/21 Test #16: demo_interpolation_different_meshes_mpi_2 .... Passed 1.44 sec Start 17: demo_interpolation_different_meshes_mpi_3 17/21 Test #17: demo_interpolation_different_meshes_mpi_3 .... Passed 11.32 sec Start 18: demo_interpolation_different_meshes_serial 18/21 Test #18: demo_interpolation_different_meshes_serial ... Passed 1.80 sec Start 19: demo_biharmonic_mpi_2 19/21 Test #19: demo_biharmonic_mpi_2 ........................ Passed 0.86 sec Start 20: demo_biharmonic_mpi_3 20/21 Test #20: demo_biharmonic_mpi_3 ........................ Passed 0.86 sec Start 21: demo_biharmonic_serial 21/21 Test #21: demo_biharmonic_serial ....................... Passed 0.87 sec 100% tests passed, 0 tests failed out of 21 Total Test time (real) = 37.47 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' == testing complex number build == running tests from test for complex build -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Configuring done (6.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: MPIEXEC_PARAMS -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' [ 8%] Compile poisson.py using FFCx ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/poisson.py cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' [ 16%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/main.cpp [ 25%] Building CXX object CMakeFiles/unittests.dir/vector.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/vector.cpp.o -MF CMakeFiles/unittests.dir/vector.cpp.o.d -o CMakeFiles/unittests.dir/vector.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/vector.cpp [ 33%] Building CXX object CMakeFiles/unittests.dir/matrix.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/matrix.cpp.o -MF CMakeFiles/unittests.dir/matrix.cpp.o.d -o CMakeFiles/unittests.dir/matrix.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/matrix.cpp [ 41%] Building CXX object CMakeFiles/unittests.dir/io.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/io.cpp.o -MF CMakeFiles/unittests.dir/io.cpp.o.d -o CMakeFiles/unittests.dir/io.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/io.cpp [ 50%] Building CXX object CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -MF CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o.d -o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/sub_systems_manager.cpp [ 58%] Building CXX object CMakeFiles/unittests.dir/common/index_map.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/index_map.cpp.o -MF CMakeFiles/unittests.dir/common/index_map.cpp.o.d -o CMakeFiles/unittests.dir/common/index_map.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/index_map.cpp [ 66%] Building CXX object CMakeFiles/unittests.dir/common/sort.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/sort.cpp.o -MF CMakeFiles/unittests.dir/common/sort.cpp.o.d -o CMakeFiles/unittests.dir/common/sort.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/sort.cpp [ 75%] Building CXX object CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -MF CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o.d -o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/mesh/distributed_mesh.cpp [ 83%] Building CXX object CMakeFiles/unittests.dir/common/CIFailure.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wall -Werror -Wextra -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/common/CIFailure.cpp.o -MF CMakeFiles/unittests.dir/common/CIFailure.cpp.o.d -o CMakeFiles/unittests.dir/common/CIFailure.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/test/common/CIFailure.cpp [ 91%] Building C object CMakeFiles/unittests.dir/poisson.c.o /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/unittests.dir/poisson.c.o -MF CMakeFiles/unittests.dir/poisson.c.o.d -o CMakeFiles/unittests.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test/poisson.c [100%] Linking CXX executable unittests /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/vector.cpp.o CMakeFiles/unittests.dir/matrix.cpp.o CMakeFiles/unittests.dir/io.cpp.o CMakeFiles/unittests.dir/common/sub_systems_manager.cpp.o CMakeFiles/unittests.dir/common/index_map.cpp.o CMakeFiles/unittests.dir/common/sort.cpp.o CMakeFiles/unittests.dir/mesh/distributed_mesh.cpp.o CMakeFiles/unittests.dir/common/CIFailure.cpp.o CMakeFiles/unittests.dir/poisson.c.o -o unittests -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib /usr/lib/libCatch2Main.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' [100%] Built target unittests make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test Start 1: unittests 1/1 Test #1: unittests ........................ Passed 1.63 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 1.63 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' running tests from demo for complex build -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer -- Found boost_headers 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.83.0 -- Found boost_timer 1.83.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.83.0 -- [x] libboost_timer.so.1.83.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70") found components: timer -- Found Python3: /usr/bin/python3 (found version "3.11.9") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- ** This demo does not support complex mode -- Configuring done (8.9s) -- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel/CMakeFiles/demo_custom_kernel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make -f custom_kernel/CMakeFiles/demo_custom_kernel.dir/build.make custom_kernel/CMakeFiles/demo_custom_kernel.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 5%] Building CXX object custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT custom_kernel/CMakeFiles/demo_custom_kernel.dir/main.cpp.o -MF CMakeFiles/demo_custom_kernel.dir/main.cpp.o.d -o CMakeFiles/demo_custom_kernel.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel/main.cpp [ 11%] Linking CXX executable demo_custom_kernel cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/custom_kernel && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_custom_kernel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_custom_kernel.dir/main.cpp.o -o demo_custom_kernel -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 11%] Built target demo_custom_kernel make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 16%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/poisson.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make -f poisson/CMakeFiles/demo_poisson.dir/build.make poisson/CMakeFiles/demo_poisson.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 22%] Building CXX object poisson/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT poisson/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/main.cpp [ 27%] Building C object poisson/CMakeFiles/demo_poisson.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson/CMakeFiles/demo_poisson.dir/poisson.c.o -MF CMakeFiles/demo_poisson.dir/poisson.c.o.d -o CMakeFiles/demo_poisson.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson/poisson.c [ 33%] Linking CXX executable demo_poisson cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_poisson.dir/main.cpp.o CMakeFiles/demo_poisson.dir/poisson.c.o -o demo_poisson -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 33%] Built target demo_poisson make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 38%] Compile poisson.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/poisson.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make -f poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build.make poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 44%] Building CXX object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -MF CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/main.cpp [ 50%] Building C object poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT poisson_matrix_free/CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -MF CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o.d -o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free/poisson.c [ 55%] Linking CXX executable demo_poisson_matrix_free cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/poisson_matrix_free && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson_matrix_free.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_poisson_matrix_free.dir/main.cpp.o CMakeFiles/demo_poisson_matrix_free.dir/poisson.c.o -o demo_poisson_matrix_free -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 55%] Built target demo_poisson_matrix_free make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io/CMakeFiles/demo_interpolation-io.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make -f interpolation-io/CMakeFiles/demo_interpolation-io.dir/build.make interpolation-io/CMakeFiles/demo_interpolation-io.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 61%] Building CXX object interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT interpolation-io/CMakeFiles/demo_interpolation-io.dir/main.cpp.o -MF CMakeFiles/demo_interpolation-io.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation-io.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io/main.cpp [ 66%] Linking CXX executable demo_interpolation-io cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation-io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro "CMakeFiles/demo_interpolation-io.dir/main.cpp.o" -o demo_interpolation-io -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 66%] Built target demo_interpolation-io make -f interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/build.make interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo 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-D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT interpolation_different_meshes/CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -MF CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o.d -o CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes/main.cpp [ 77%] Linking CXX executable demo_interpolation_different_meshes cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/interpolation_different_meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interpolation_different_meshes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_interpolation_different_meshes.dir/main.cpp.o -o demo_interpolation_different_meshes 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'/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 77%] Built target demo_interpolation_different_meshes make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/depend make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 83%] Compile biharmonic.py using FFCx cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && ffcx /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/biharmonic.py --scalar_type=complex128 cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make -f biharmonic/CMakeFiles/demo_biharmonic.dir/build.make biharmonic/CMakeFiles/demo_biharmonic.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [ 88%] Building CXX object biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -std=c++20 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-comment -Wall -Wextra -pedantic -Werror -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/main.cpp [ 94%] Building C object biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/cc -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -I/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT biharmonic/CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -MF CMakeFiles/demo_biharmonic.dir/biharmonic.c.o.d -o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic/biharmonic.c [100%] Linking CXX executable demo_biharmonic cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/biharmonic && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro CMakeFiles/demo_biharmonic.dir/main.cpp.o CMakeFiles/demo_biharmonic.dir/biharmonic.c.o -o demo_biharmonic -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' [100%] Built target demo_biharmonic make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' Running tests... /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo Start 1: demo_custom_kernel_mpi_2 1/18 Test #1: demo_custom_kernel_mpi_2 ..................... Passed 1.64 sec Start 2: demo_custom_kernel_mpi_3 2/18 Test #2: demo_custom_kernel_mpi_3 ..................... Passed 1.57 sec Start 3: demo_custom_kernel_serial 3/18 Test #3: demo_custom_kernel_serial .................... Passed 1.51 sec Start 4: demo_poisson_mpi_2 4/18 Test #4: demo_poisson_mpi_2 ........................... Passed 0.72 sec Start 5: demo_poisson_mpi_3 5/18 Test #5: demo_poisson_mpi_3 ........................... Passed 0.67 sec Start 6: demo_poisson_serial 6/18 Test #6: demo_poisson_serial .......................... Passed 0.64 sec Start 7: demo_poisson_matrix_free_mpi_2 7/18 Test #7: demo_poisson_matrix_free_mpi_2 ............... Passed 0.66 sec Start 8: demo_poisson_matrix_free_mpi_3 8/18 Test #8: demo_poisson_matrix_free_mpi_3 ............... Passed 0.98 sec Start 9: demo_poisson_matrix_free_serial 9/18 Test #9: demo_poisson_matrix_free_serial .............. Passed 0.64 sec Start 10: demo_interpolation-io_mpi_2 10/18 Test #10: demo_interpolation-io_mpi_2 .................. Passed 0.62 sec Start 11: demo_interpolation-io_mpi_3 11/18 Test #11: demo_interpolation-io_mpi_3 .................. Passed 0.70 sec Start 12: demo_interpolation-io_serial 12/18 Test #12: demo_interpolation-io_serial ................. Passed 0.72 sec Start 13: demo_interpolation_different_meshes_mpi_2 13/18 Test #13: demo_interpolation_different_meshes_mpi_2 .... Passed 1.40 sec Start 14: demo_interpolation_different_meshes_mpi_3 14/18 Test #14: demo_interpolation_different_meshes_mpi_3 .... Passed 10.92 sec Start 15: demo_interpolation_different_meshes_serial 15/18 Test #15: demo_interpolation_different_meshes_serial ... Passed 1.79 sec Start 16: demo_biharmonic_mpi_2 16/18 Test #16: demo_biharmonic_mpi_2 ........................ Passed 0.83 sec Start 17: demo_biharmonic_mpi_3 17/18 Test #17: demo_biharmonic_mpi_3 ........................ Passed 0.80 sec Start 18: demo_biharmonic_serial 18/18 Test #18: demo_biharmonic_serial ....................... Passed 0.90 sec 100% tests passed, 0 tests failed out of 18 Total Test time (real) = 27.73 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_auto_install -i --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8 -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/defines.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_common.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/dolfinx_doc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/IndexMap.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/log.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/loguru.hpp -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/sort.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/types.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/math.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/MPI.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/Scatterer.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/Table.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/Timer.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogger.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/TimeLogManager.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/timing.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Constant.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/CoordinateElement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/DirichletBC.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/DofMap.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/ElementDofLayout.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Expression.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/FiniteElement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Form.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/Function.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/FunctionSpace.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assembler.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_matrix_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_scalar_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/assemble_vector_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/discreteoperators.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/dofmapbuilder.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/dolfinx_fem.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/interpolate.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/petsc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/sparsitybuild.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/traits.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/fem/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/BoundingBoxTree.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/gjk.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/dolfinx_geometry.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/geometry/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/AdjacencyList.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/dolfinx_graph.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/ordering.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/partitioners.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/graph/partition.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/dolfinx_io.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/ADIOS2Writers.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/cells.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/HDF5Interface.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/vtk_utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/VTKFile.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/XDMFFile.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_function.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/io/xdmf_utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/dolfinx_la.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/MatrixCSR.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/matrix_csr_impl.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/SparsityPattern.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/Vector.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/petsc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/la/slepc.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/dolfinx_mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/Mesh.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/Geometry.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/Topology.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/MeshTags.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/cell_types.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/generation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/graphbuild.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/permutationcomputation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/topologycomputation.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/mesh/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/nls/dolfinx_nls.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/nls/NewtonSolver.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/dolfinx_refinement.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/plaza.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/refine.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/refinement/utils.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include/dolfinx/common/version.h -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfig.cmake -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXConfigVersion.cmake -- Installing: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_complex.pc -- Up-to-date: /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- DOLFINx has now been installed in /usr and demo programs have been installed in /usr/share/dolfinx/demo Don't forget to update your environment variables. This can be done easily using the helper file 'dolfinx.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/lib/x86_64-linux-gnu/dolfinx/dolfinx.conf ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' (cd cpp/doc; doxygen) warning: Tag 'HTML_TIMESTAMP' at line 1387 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 2055 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity Reading and parsing tag files Parsing files Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/dolfinx_common.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/dolfinx_common.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/dolfinx_doc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/dolfinx_doc.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/math.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/math.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Scatterer.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Scatterer.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/sort.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/sort.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogManager.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogManager.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogManager.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogManager.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/timing.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/timing.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/timing.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/timing.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/types.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/types.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/dolfinx.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/dolfinx.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_vector_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_vector_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assembler.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assembler.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Constant.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Constant.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DirichletBC.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DirichletBC.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DirichletBC.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DirichletBC.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/discreteoperators.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/discreteoperators.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dofmapbuilder.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dofmapbuilder.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dofmapbuilder.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dolfinx_fem.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dolfinx_fem.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Expression.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Expression.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FiniteElement.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FiniteElement.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FiniteElement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FiniteElement.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Form.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Form.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Function.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Function.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FunctionSpace.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FunctionSpace.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/interpolate.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/interpolate.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/traits.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/traits.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/gjk.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/gjk.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/AdjacencyList.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/AdjacencyList.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/dolfinx_graph.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/dolfinx_graph.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partitioners.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partitioners.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partitioners.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partitioners.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/dolfinx_io.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/dolfinx_io.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_function.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_function.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_function.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_function.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_mesh.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_mesh.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/XDMFFile.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/XDMFFile.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/XDMFFile.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/XDMFFile.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/dolfinx_la.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/dolfinx_la.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/matrix_csr_impl.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/matrix_csr_impl.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/MatrixCSR.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/MatrixCSR.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/Vector.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/Vector.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/generation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/generation.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Geometry.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Geometry.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/graphbuild.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/graphbuild.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/graphbuild.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/graphbuild.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Mesh.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Mesh.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/MeshTags.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/MeshTags.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/permutationcomputation.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/permutationcomputation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/permutationcomputation.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Topology.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Topology.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Topology.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Topology.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/topologycomputation.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/topologycomputation.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/topologycomputation.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/topologycomputation.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/dolfinx_nls.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/dolfinx_nls.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/refine.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/refine.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.h... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.h... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/biharmonic.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/biharmonic.py... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/hyperelasticity.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/hyperelasticity.py... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/poisson.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/poisson.py... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/main.cpp... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/main.cpp... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/poisson.py... Parsing file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/poisson.py... Reading /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/README.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/dolfinx_common.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/dolfinx_doc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/math.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Scatterer.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/sort.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogManager.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/timing.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/dolfinx.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_matrix_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_scalar_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assemble_vector_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/assembler.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Constant.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DirichletBC.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/discreteoperators.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dofmapbuilder.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/dolfinx_fem.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ElementDofLayout.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Expression.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FiniteElement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Form.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FunctionSpace.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/interpolate.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/traits.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/gjk.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/AdjacencyList.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/dolfinx_graph.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partitioners.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/cells.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/dolfinx_io.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/HDF5Interface.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/VTKFile.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/xdmf_utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/XDMFFile.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/dolfinx_la.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/matrix_csr_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/MatrixCSR.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/Vector.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/dolfinx_mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/generation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/graphbuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Mesh.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/MeshTags.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/permutationcomputation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/Topology.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/topologycomputation.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/dolfinx_nls.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/NewtonSolver.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/dolfinx_refinement.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/refine.h... Generating file documentation... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2fenics-dolfinx-0_88_80_2cpp_2demo_2README... Generating docs for page todo... Generating group documentation... Generating class documentation... Generating docs for compound HyperElasticProblem... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound basix::FiniteElement... Generating docs for namespace dolfinx Generating docs for compound dolfinx::Table... Generating docs for concept dolfinx::scalar... Generating docs for namespace dolfinx::common Generating docs for compound dolfinx::common::IndexMap... Generating docs for compound dolfinx::common::Scatterer... Generating docs for compound dolfinx::common::TimeLogger... Generating docs for compound dolfinx::common::TimeLogManager... Generating docs for compound dolfinx::common::Timer... Generating docs for namespace dolfinx::fem Generating docs for compound dolfinx::fem::Constant... Generating docs for compound dolfinx::fem::CoordinateElement... Generating docs for compound dolfinx::fem::DirichletBC... Generating docs for compound dolfinx::fem::DofMap... Generating docs for compound dolfinx::fem::ElementDofLayout... Generating docs for compound dolfinx::fem::Expression... Generating docs for compound dolfinx::fem::FiniteElement... Generating docs for compound dolfinx::fem::Form... Generating docs for compound dolfinx::fem::Function... Generating docs for compound dolfinx::fem::FunctionSpace... Generating docs for compound dolfinx::fem::integral_data... Generating docs for concept dolfinx::fem::MDSpan... Generating docs for concept dolfinx::fem::DofTransformKernel... Generating docs for concept dolfinx::fem::FEkernel... Generating docs for concept dolfinx::fem::impl::FetchCells... Generating docs for namespace dolfinx::fem::petsc Generating docs for namespace dolfinx::fem::sparsitybuild Generating docs for namespace dolfinx::geometry Generating docs for compound dolfinx::geometry::BoundingBoxTree... Generating docs for namespace dolfinx::graph Generating docs for compound dolfinx::graph::AdjacencyList... Generating docs for namespace dolfinx::graph::build Generating docs for namespace dolfinx::graph::kahip Generating docs for namespace dolfinx::io Generating docs for compound dolfinx::io::ADIOS2Writer... Generating docs for compound dolfinx::io::VTKFile... Generating docs for compound dolfinx::io::XDMFFile... Generating docs for namespace dolfinx::io::cells Generating docs for namespace dolfinx::io::xdmf_function Generating docs for namespace dolfinx::io::xdmf_mesh Generating docs for namespace dolfinx::la Generating docs for compound dolfinx::la::MatrixCSR... Generating docs for compound dolfinx::la::SLEPcEigenSolver... Generating docs for compound dolfinx::la::SparsityPattern... Generating docs for compound dolfinx::la::Vector... Generating docs for concept dolfinx::la::MatSet... Generating docs for namespace dolfinx::la::petsc Generating docs for compound dolfinx::la::petsc::KrylovSolver... Generating docs for compound dolfinx::la::petsc::Matrix... Generating docs for compound dolfinx::la::petsc::Operator... Generating docs for compound dolfinx::la::petsc::Vector... Generating docs for namespace dolfinx::la::petsc::options Generating docs for namespace dolfinx::mesh Generating docs for compound dolfinx::mesh::Geometry... Generating docs for compound dolfinx::mesh::Mesh... Generating docs for compound dolfinx::mesh::MeshTags... Generating docs for compound dolfinx::mesh::Topology... Generating docs for concept dolfinx::mesh::MarkerFn... Generating docs for namespace dolfinx::MPI Generating docs for compound dolfinx::MPI::Comm... Generating docs for compound dolfinx::MPI::dependent_false... Generating docs for namespace dolfinx::nls Generating docs for compound dolfinx::nls::petsc::NewtonSolver... Generating docs for namespace dolfinx::refinement Generating docs for namespace dolfinx::refinement::plaza Generating graph info page... Generating directory documentation... Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free Generating dependency graph for directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class dolfinx::io::ADIOS2Writer Generating XML output for class dolfinx::graph::AdjacencyList Generating XML output for class dolfinx::geometry::BoundingBoxTree Generating XML output for class dolfinx::MPI::Comm Generating XML output for class dolfinx::fem::Constant Generating XML output for class dolfinx::fem::CoordinateElement Generating XML output for class dolfinx::MPI::dependent_false Generating XML output for class dolfinx::fem::DirichletBC Generating XML output for class dolfinx::fem::DofMap Generating XML output for class dolfinx::fem::ElementDofLayout Generating XML output for class dolfinx::fem::Expression Generating XML output for class dolfinx::io::FidesWriter Generating XML output for class basix::FiniteElement Generating XML output for class dolfinx::fem::FiniteElement Generating XML output for class dolfinx::fem::Form Generating XML output for class dolfinx::fem::Function Generating XML output for class dolfinx::fem::FunctionSpace Generating XML output for class dolfinx::mesh::Geometry Generating XML output for class HyperElasticProblem Generating XML output for class dolfinx::common::IndexMap Generating XML output for class dolfinx::fem::integral_data Generating XML output for class dolfinx::la::petsc::KrylovSolver Generating XML output for class dolfinx::la::petsc::Matrix Generating XML output for class dolfinx::la::MatrixCSR Generating XML output for class dolfinx::mesh::Mesh Generating XML output for class dolfinx::mesh::MeshTags Generating XML output for class dolfinx::nls::petsc::NewtonSolver Generating XML output for class dolfinx::la::petsc::Operator Generating XML output for class dolfinx::scalar_value_type Generating XML output for class dolfinx::scalar_value_type< T, std::void_t< typename T::value_type > > Generating XML output for class dolfinx::common::Scatterer Generating XML output for class dolfinx::la::SLEPcEigenSolver Generating XML output for class dolfinx::la::SparsityPattern Generating XML output for class dolfinx::Table Generating XML output for class dolfinx::common::TimeLogger Generating XML output for class dolfinx::common::TimeLogManager Generating XML output for class dolfinx::common::Timer Generating XML output for class dolfinx::mesh::Topology Generating XML output for class dolfinx::la::petsc::Vector Generating XML output for class dolfinx::la::Vector Generating XML output for class dolfinx::io::VTKFile Generating XML output for class dolfinx::io::VTXWriter Generating XML output for class dolfinx::io::XDMFFile Generating XML output for concept dolfinx::fem::DofTransformKernel Generating XML output for concept dolfinx::fem::FEkernel Generating XML output for concept dolfinx::fem::impl::FetchCells Generating XML output for concept dolfinx::fem::MDSpan Generating XML output for concept dolfinx::la::MatSet Generating XML output for concept dolfinx::mesh::MarkerFn Generating XML output for concept dolfinx::scalar Generating XML output for namespace @104 Generating XML output for namespace @108 Generating XML output for namespace @110 Generating XML output for namespace @112 Generating XML output for namespace @117 Generating XML output for namespace @120 Generating XML output for namespace @13 Generating XML output for namespace @33 Generating XML output for namespace @36 Generating XML output for namespace @38 Generating XML output for namespace @4 Generating XML output for namespace @44 Generating XML output for namespace @63 Generating XML output for namespace @67 Generating XML output for namespace @69 Generating XML output for namespace @71 Generating XML output for namespace @74 Generating XML output for namespace @78 Generating XML output for namespace @80 Generating XML output for namespace @84 Generating XML output for namespace basix Generating XML output for namespace biharmonic Generating XML output for namespace dolfinx Generating XML output for namespace dolfinx::common Generating XML output for namespace dolfinx::fem Generating XML output for namespace dolfinx::fem::impl Generating XML output for namespace dolfinx::fem::petsc Generating XML output for namespace dolfinx::fem::sparsitybuild Generating XML output for namespace dolfinx::geometry Generating XML output for namespace dolfinx::geometry::impl Generating XML output for namespace dolfinx::geometry::impl_bb Generating XML output for namespace dolfinx::geometry::impl_gjk Generating XML output for namespace dolfinx::graph Generating XML output for namespace dolfinx::graph::build Generating XML output for namespace dolfinx::graph::kahip Generating XML output for namespace dolfinx::graph::parmetis Generating XML output for namespace dolfinx::graph::scotch Generating XML output for namespace dolfinx::io Generating XML output for namespace dolfinx::io::adios2_writer Generating XML output for namespace dolfinx::io::cells Generating XML output for namespace dolfinx::io::hdf5 Generating XML output for namespace dolfinx::io::impl Generating XML output for namespace dolfinx::io::impl_adios2 Generating XML output for namespace dolfinx::io::impl_fides Generating XML output for namespace dolfinx::io::impl_vtx Generating XML output for namespace dolfinx::io::xdmf_function Generating XML output for namespace dolfinx::io::xdmf_mesh Generating XML output for namespace dolfinx::io::xdmf_utils Generating XML output for namespace dolfinx::la Generating XML output for namespace dolfinx::la::impl Generating XML output for namespace dolfinx::la::petsc Generating XML output for namespace dolfinx::la::petsc::options Generating XML output for namespace dolfinx::math Generating XML output for namespace dolfinx::mesh Generating XML output for namespace dolfinx::mesh::impl Generating XML output for namespace dolfinx::MPI Generating XML output for namespace dolfinx::nls Generating XML output for namespace dolfinx::nls::petsc Generating XML output for namespace dolfinx::refinement Generating XML output for namespace dolfinx::refinement::impl Generating XML output for namespace dolfinx::refinement::plaza Generating XML output for namespace dolfinx::refinement::plaza::impl Generating XML output for namespace hyperelasticity Generating XML output for namespace linalg Generating XML output for namespace poisson Generating XML output for namespace pugi Generating XML output for namespace std Generating XML output for file biharmonic.py Generating XML output for file hyperelasticity.py Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file main.cpp Generating XML output for file poisson.py Generating XML output for file poisson.py Generating XML output for file README.md Generating XML output for file defines.cpp Generating XML output for file defines.h Generating XML output for file dolfinx_common.h Generating XML output for file dolfinx_doc.h Generating XML output for file IndexMap.cpp Generating XML output for file IndexMap.h Generating XML output for file log.cpp Generating XML output for file log.h Generating XML output for file math.h Generating XML output for file MPI.cpp Generating XML output for file MPI.h Generating XML output for file Scatterer.h Generating XML output for file sort.h Generating XML output for file Table.cpp Generating XML output for file Table.h Generating XML output for file TimeLogger.cpp Generating XML output for file TimeLogger.h Generating XML output for file TimeLogManager.cpp Generating XML output for file TimeLogManager.h Generating XML output for file Timer.cpp Generating XML output for file Timer.h Generating XML output for file timing.cpp Generating XML output for file timing.h Generating XML output for file types.h Generating XML output for file dolfinx.h Generating XML output for file assemble_matrix_impl.h Generating XML output for file assemble_scalar_impl.h Generating XML output for file assemble_vector_impl.h Generating XML output for file assembler.h Generating XML output for file Constant.h Generating XML output for file CoordinateElement.cpp Generating XML output for file CoordinateElement.h Generating XML output for file DirichletBC.cpp Generating XML output for file DirichletBC.h Generating XML output for file discreteoperators.h Generating XML output for file DofMap.cpp Generating XML output for file DofMap.h Generating XML output for file dofmapbuilder.cpp Generating XML output for file dofmapbuilder.h Generating XML output for file dolfinx_fem.h Generating XML output for file ElementDofLayout.cpp Generating XML output for file ElementDofLayout.h Generating XML output for file Expression.h Generating XML output for file FiniteElement.cpp Generating XML output for file FiniteElement.h Generating XML output for file Form.h Generating XML output for file Function.h Generating XML output for file FunctionSpace.h Generating XML output for file interpolate.h Generating XML output for file petsc.cpp Generating XML output for file petsc.cpp Generating XML output for file petsc.h Generating XML output for file petsc.h Generating XML output for file sparsitybuild.cpp Generating XML output for file sparsitybuild.h Generating XML output for file traits.h Generating XML output for file BoundingBoxTree.h Generating XML output for file dolfinx_geometry.h Generating XML output for file gjk.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file utils.h Generating XML output for file AdjacencyList.h Generating XML output for file dolfinx_graph.h Generating XML output for file ordering.cpp Generating XML output for file ordering.h Generating XML output for file partition.cpp Generating XML output for file partition.h Generating XML output for file partitioners.cpp Generating XML output for file partitioners.h Generating XML output for file ADIOS2Writers.cpp Generating XML output for file ADIOS2Writers.h Generating XML output for file cells.cpp Generating XML output for file cells.h Generating XML output for file dolfinx_io.h Generating XML output for file HDF5Interface.cpp Generating XML output for file HDF5Interface.h Generating XML output for file vtk_utils.cpp Generating XML output for file vtk_utils.h Generating XML output for file VTKFile.cpp Generating XML output for file VTKFile.h Generating XML output for file xdmf_function.cpp Generating XML output for file xdmf_function.h Generating XML output for file xdmf_mesh.cpp Generating XML output for file xdmf_mesh.h Generating XML output for file xdmf_utils.cpp Generating XML output for file xdmf_utils.h Generating XML output for file XDMFFile.cpp Generating XML output for file XDMFFile.h Generating XML output for file dolfinx_la.h Generating XML output for file matrix_csr_impl.h Generating XML output for file MatrixCSR.h Generating XML output for file slepc.cpp Generating XML output for file slepc.h Generating XML output for file SparsityPattern.cpp Generating XML output for file SparsityPattern.h Generating XML output for file Vector.h Generating XML output for file cell_types.cpp Generating XML output for file cell_types.h Generating XML output for file dolfinx_mesh.h Generating XML output for file generation.h Generating XML output for file Geometry.h Generating XML output for file graphbuild.cpp Generating XML output for file graphbuild.h Generating XML output for file Mesh.h Generating XML output for file MeshTags.h Generating XML output for file permutationcomputation.cpp Generating XML output for file permutationcomputation.h Generating XML output for file Topology.cpp Generating XML output for file Topology.h Generating XML output for file topologycomputation.cpp Generating XML output for file topologycomputation.h Generating XML output for file utils.cpp Generating XML output for file utils.cpp Generating XML output for file utils.cpp Generating XML output for file dolfinx_nls.h Generating XML output for file NewtonSolver.cpp Generating XML output for file NewtonSolver.h Generating XML output for file dolfinx_refinement.h Generating XML output for file plaza.cpp Generating XML output for file plaza.h Generating XML output for file refine.h Generating XML output for page md__2build_2reproducible-path_2fenics-dolfinx-0_88_80_2cpp_2demo_2README Generating XML output for page todo Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free/ Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/ Generating XML output for the main page Running plantuml with JAVA... Running dot... Generating dot graphs using 21 parallel threads... 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(cd python/doc; \ mkdir -p build/pkgconfig; \ cp /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx_real.pc build/pkgconfig; \ sed "s|prefix=/usr|prefix=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr|" -i build/pkgconfig/dolfinx_real.pc; \ PYTHONPATH=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/python3.11/dist-packages \ PKG_CONFIG_PATH=`pwd`/build/pkgconfig:${PKG_CONFIG_PATH} \ LD_LIBRARY_PATH=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/:${LD_LIBRARY_PATH} \ XDG_CACHE_HOME=`pwd`/build \ RDMAV_FORK_SAFE=1 \ python3 -m sphinx -W -b html source/ .pybuild/html/) Running Sphinx v7.2.6 Matplotlib created a temporary config/cache directory at /tmp/matplotlib-dj_fdck5 because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. TNT degree 2 error: 0.0029421918345155723 TNT degree 2 error: 0.00017118942553985523 TNT degree 3 error: 8.385106828739382e-06 TNT degree 4 error: 3.3949902024564483e-07 TNT degree 5 error: 1.252824330354652e-08 TNT degree 6 error: 4.2428270710714196e-10 TNT degree 7 error: 1.9857560036260907e-10 TNT degree 8 error: 2.9564067966901247e-10 Q degree 1 error: 0.04076382001057696 Q degree 2 error: 0.0029182213395269026 Q degree 3 error: 0.00015944660110820238 Q degree 4 error: 7.937421445106392e-06 Q degree 5 error: 3.103466862454414e-07 Q degree 6 error: 1.1356498985834765e-08 Q degree 7 error: 3.416142888358552e-10 Q degree 8 error: 6.191397828644844e-11 Computed L2 interpolation error (equispaced): 0.01588506513458592 Computed L2 interpolation error (gll_warped): 0.0015137108623519335 making output directory... done [autosummary] generating autosummary for: api.rst, contributing.rst, demos.rst, demos/demo_axis.md, demos/demo_biharmonic.md, demos/demo_cahn-hilliard.md, demos/demo_elasticity.md, demos/demo_gmsh.md, demos/demo_half_loaded_waveguide.md, demos/demo_helmholtz.md, ..., demos/demo_pyvista.md, demos/demo_scattering_boundary_conditions.md, demos/demo_static-condensation.md, demos/demo_stokes.md, demos/demo_tnt-elements.md, demos/demo_types.md, developer.rst, index.rst, installation.rst, styleguide_cpp.rst [autosummary] generating autosummary for: /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.common.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.common.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.fem.petsc.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.fem.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.geometry.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.graph.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.io.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.la.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.log.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.cpp.mesh.rst, ..., /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.geometry.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.graph.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.io.gmshio.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.io.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.jit.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.la.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.mesh.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.nls.petsc.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.pkgconfig.rst, /build/reproducible-path/fenics-dolfinx-0.8.0/python/doc/source/generated/dolfinx.plot.rst myst v3.0.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 27 source files that are out of date updating environment: [new config] 52 added, 0 changed, 0 removed reading sources... [ 2%] api reading sources... [ 4%] contributing reading sources... [ 6%] demos reading sources... [ 8%] demos/demo_axis reading sources... [ 10%] demos/demo_biharmonic reading sources... [ 12%] demos/demo_cahn-hilliard reading sources... [ 13%] demos/demo_elasticity reading sources... [ 15%] demos/demo_gmsh reading sources... [ 17%] demos/demo_half_loaded_waveguide reading sources... [ 19%] demos/demo_helmholtz reading sources... [ 21%] demos/demo_interpolation-io reading sources... [ 23%] demos/demo_lagrange_variants reading sources... [ 25%] demos/demo_mixed-poisson reading sources... [ 27%] demos/demo_navier-stokes reading sources... [ 29%] demos/demo_pml reading sources... [ 31%] demos/demo_poisson reading sources... [ 33%] demos/demo_poisson_matrix_free reading sources... [ 35%] demos/demo_pyvista reading sources... [ 37%] demos/demo_scattering_boundary_conditions reading sources... [ 38%] demos/demo_static-condensation reading sources... [ 40%] demos/demo_stokes reading sources... [ 42%] demos/demo_tnt-elements reading sources... [ 44%] demos/demo_types reading sources... [ 46%] developer reading sources... [ 48%] generated/dolfinx.common reading sources... [ 50%] generated/dolfinx.cpp.common reading sources... [ 52%] generated/dolfinx.cpp.fem reading sources... [ 54%] generated/dolfinx.cpp.fem.petsc reading sources... [ 56%] generated/dolfinx.cpp.geometry reading sources... [ 58%] generated/dolfinx.cpp.graph reading sources... [ 60%] generated/dolfinx.cpp.io reading sources... [ 62%] generated/dolfinx.cpp.la reading sources... [ 63%] generated/dolfinx.cpp.log reading sources... [ 65%] generated/dolfinx.cpp.mesh reading sources... [ 67%] generated/dolfinx.cpp.nls reading sources... [ 69%] generated/dolfinx.cpp.nls.petsc reading sources... [ 71%] generated/dolfinx.cpp.refinement reading sources... [ 73%] generated/dolfinx.fem reading sources... [ 75%] generated/dolfinx.fem.petsc reading sources... [ 77%] generated/dolfinx.geometry reading sources... [ 79%] generated/dolfinx.graph reading sources... [ 81%] generated/dolfinx.io reading sources... [ 83%] generated/dolfinx.io.gmshio reading sources... [ 85%] generated/dolfinx.jit reading sources... [ 87%] generated/dolfinx.la reading sources... [ 88%] generated/dolfinx.mesh reading sources... [ 90%] generated/dolfinx.nls.petsc reading sources... [ 92%] generated/dolfinx.pkgconfig reading sources... [ 94%] generated/dolfinx.plot reading sources... [ 96%] index reading sources... [ 98%] installation reading sources... [100%] styleguide_cpp looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying downloadable files... [ 7%] demos/demo_biharmonic.py copying downloadable files... [ 13%] demos/demo_cahn-hilliard.py copying downloadable files... [ 20%] demos/demo_elasticity.py copying downloadable files... [ 27%] demos/demo_gmsh.py copying downloadable files... [ 33%] demos/demo_interpolation-io.py copying downloadable files... [ 40%] demos/demo_lagrange_variants.py copying downloadable files... [ 47%] demos/demo_mixed-poisson.py copying downloadable files... [ 53%] demos/demo_mixed-poisson.ipynb copying downloadable files... [ 60%] demos/demo_navier-stokes.py copying downloadable files... [ 67%] demos/demo_poisson.py copying downloadable files... [ 73%] demos/demo_poisson_matrix_free.py copying downloadable files... [ 80%] demos/demo_poisson_matrix_free.ipynb copying downloadable files... [ 87%] demos/demo_stokes.py copying downloadable files... [ 93%] demos/demo_tnt-elements.py copying downloadable files... [100%] demos/demo_types.py copying static files... done copying extra files... done done writing output... [ 2%] api writing output... [ 4%] contributing writing output... [ 6%] demos writing output... [ 8%] demos/demo_axis writing output... [ 10%] demos/demo_biharmonic writing output... [ 12%] demos/demo_cahn-hilliard writing output... [ 13%] demos/demo_elasticity writing output... [ 15%] demos/demo_gmsh writing output... [ 17%] demos/demo_half_loaded_waveguide writing output... [ 19%] demos/demo_helmholtz writing output... [ 21%] demos/demo_interpolation-io writing output... [ 23%] demos/demo_lagrange_variants writing output... [ 25%] demos/demo_mixed-poisson writing output... [ 27%] demos/demo_navier-stokes writing output... [ 29%] demos/demo_pml writing output... [ 31%] demos/demo_poisson writing output... [ 33%] demos/demo_poisson_matrix_free writing output... [ 35%] demos/demo_pyvista writing output... [ 37%] demos/demo_scattering_boundary_conditions writing output... [ 38%] demos/demo_static-condensation writing output... [ 40%] demos/demo_stokes writing output... [ 42%] demos/demo_tnt-elements writing output... [ 44%] demos/demo_types writing output... [ 46%] developer writing output... [ 48%] generated/dolfinx.common writing output... [ 50%] generated/dolfinx.cpp.common writing output... [ 52%] generated/dolfinx.cpp.fem writing output... [ 54%] generated/dolfinx.cpp.fem.petsc writing output... [ 56%] generated/dolfinx.cpp.geometry writing output... [ 58%] generated/dolfinx.cpp.graph writing output... [ 60%] generated/dolfinx.cpp.io writing output... [ 62%] generated/dolfinx.cpp.la writing output... [ 63%] generated/dolfinx.cpp.log writing output... [ 65%] generated/dolfinx.cpp.mesh writing output... [ 67%] generated/dolfinx.cpp.nls writing output... [ 69%] generated/dolfinx.cpp.nls.petsc writing output... [ 71%] generated/dolfinx.cpp.refinement writing output... [ 73%] generated/dolfinx.fem writing output... [ 75%] generated/dolfinx.fem.petsc writing output... [ 77%] generated/dolfinx.geometry writing output... [ 79%] generated/dolfinx.graph writing output... [ 81%] generated/dolfinx.io writing output... [ 83%] generated/dolfinx.io.gmshio writing output... 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[100%] dolfinx.plot writing additional pages... search done copying images... [ 17%] demos/demo_lagrange_variants_equispaced_10.png copying images... [ 33%] demos/demo_lagrange_variants_gll_10.png copying images... [ 50%] demos/demo_lagrange_variants_interpolation_equispaced.png copying images... [ 67%] demos/demo_lagrange_variants_interpolation_gll_warped.png copying images... [ 83%] demos/demo_tnt-elements_degrees_vs_error.png copying images... [100%] demos/demo_tnt-elements_ndofs_vs_error.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in .pybuild/html. dh_numpy3 -i make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_install -a sed "s/set(CMAKE_IMPORT_FILE_VERSION 1)/set(CMAKE_IMPORT_FILE_VERSION 1)\n\nif(PETSC_SCALAR_COMPLEX)\n set(LIB_NAME_EXT \"_complex\")\nelse()\n set(LIB_NAME_EXT \"_real\")\nendif()/; \ s/libdolfinx_real.so/libdolfinx\${LIB_NAME_EXT}.so/g" \ -i debian/libdolfinx-dev/usr/lib/x86_64-linux-gnu/cmake/dolfinx/DOLFINXTargets-relwithdebinfo.cmake make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_install -O--buildsystem=cmake -Nlibdolfinx-dev -Nlibdolfinx-real-dev -Nlibdolfinx-complex-dev -Nlibdolfinx-real0.8 -Nlibdolfinx-complex0.8 -Npython3-dolfinx -Npython3-dolfinx-real -Npython3-dolfinx-complex dh_installdocs -O--buildsystem=cmake dh_installdocs: warning: Cannot auto-detect main package for dolfinx-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_python3 -a E: dh_python3 pydist:292: more than one package name found for petsc4py dist I: dh_python3 pydist:302: Cannot find package that provides petsc4py. Please add package that provides it to Build-Depends or add "petsc4py python3-petsc4py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. E: dh_python3 pydist:292: more than one package name found for petsc4py dist I: dh_python3 pydist:302: Cannot find package that provides petsc4py. Please add package that provides it to Build-Depends or add "petsc4py python3-petsc4py" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_numpy3 -a mkdir -p debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib mv debian/python3-dolfinx-real/usr/lib/python3 debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib rm -rf debian/python3-dolfinx-real//usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx_utils mkdir -p debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib mv debian/python3-dolfinx-complex/usr/lib/python3 debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib rm -rf debian/python3-dolfinx-complex//usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx_utils make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_python3 -O--buildsystem=cmake -Nlibdolfinx-dev -Nlibdolfinx-real-dev -Nlibdolfinx-complex-dev -Nlibdolfinx-real0.8 -Nlibdolfinx-complex0.8 -Npython3-dolfinx -Npython3-dolfinx-real -Npython3-dolfinx-complex E: dh_python3 dh_python3:197: no package to act on (python3-foo or one with ${python3:Depends} in Depends) dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_strip --package=libdolfinx-real0.8 -Xcomplex -Xpython dh_strip --package=libdolfinx-complex0.8 -Xreal -Xpython dh_strip --package=python3-dolfinx-real make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_makeshlibs -a -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so were not linked against libmpi_cxx.so.40 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfinx-complex/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so debian/python3-dolfinx-complex/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so were not linked against libmpi_cxx.so.40 (they use none of the library's symbols) make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' echo "python3-petsc4py-real:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.20), python3-petsc4py-real (<< 3.21), python3-slepc4py-real (>= 3.20), python3-slepc4py-real (<< 3.21)" >> debian/python3-dolfinx-real.substvars echo "python3-petsc4py-complex:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-complex (>= 3.20), python3-petsc4py-complex (<< 3.21), python3-slepc4py-complex (>= 3.20), python3-slepc4py-complex (<< 3.21)" >> debian/python3-dolfinx-complex.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py, python3-slepc4py, python3-petsc4py-real (>= 3.20), python3-petsc4py-real (<< 3.21), python3-slepc4py-real (>= 3.20), python3-slepc4py-real (<< 3.21)" >> debian/libdolfinx-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.20-dev, libslepc-real3.20-dev" -Vpetsc-complex:Depends="libpetsc-complex3.20-dev, libslepc-complex3.20-dev" -Vdolfinx:Next-Upstream-Version=1:0.9~ \ -Vnanobind:Upstream-Version=2.0 -Vnanobind:Next-Upstream-Version=3 dpkg-gencontrol: warning: package libdolfinx-complex-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.8: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.8: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.8: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-complex0.8: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libdolfinx-dev' in '../libdolfinx-dev_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex-dev' in '../libdolfinx-complex-dev_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.8' in '../libdolfinx-real0.8_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.8-dbgsym' in '../libdolfinx-real0.8-dbgsym_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.8-dbgsym' in '../libdolfinx-complex0.8-dbgsym_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.8' in '../libdolfinx-complex0.8_0.8.0-9_amd64.deb'. dpkg-deb: building package 'python3-dolfinx' in '../python3-dolfinx_0.8.0-9_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-real' in '../python3-dolfinx-real_0.8.0-9_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-complex' in '../python3-dolfinx-complex_0.8.0-9_amd64.deb'. dpkg-deb: building package 'dolfinx-doc' in '../dolfinx-doc_0.8.0-9_all.deb'. dpkg-genbuildinfo --build=binary -O../fenics-dolfinx_0.8.0-9_amd64.buildinfo dpkg-genchanges --build=binary -O../fenics-dolfinx_0.8.0-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3905412 and its subdirectories I: Current time: Tue Jun 11 15:35:40 +14 2024 I: pbuilder-time-stamp: 1718069740