I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 4 05:21:25 +14 2026 I: pbuilder-time-stamp: 1767453685 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dwgsim_0.1.14-3.dsc] I: copying [./dwgsim_0.1.14.orig.tar.gz] I: copying [./dwgsim_0.1.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 25 08:08:52 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dwgsim_0.1.14-3.dsc: no acceptable signature found dpkg-source: info: extracting dwgsim in dwgsim-0.1.14 dpkg-source: info: unpacking dwgsim_0.1.14.orig.tar.gz dpkg-source: info: unpacking dwgsim_0.1.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Debian-ise-makefile.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying remove-privacy-breach-links.patch dpkg-source: info: applying copy-samtools-test-properly.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 3 15:21 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=bec6e33f73f048a995f990db42ae4a7c LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3629365 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Iu8XAWTi/pbuilderrc_LxcK --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Iu8XAWTi/b2 --logfile b2/build.log dwgsim_0.1.14-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), samtools, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19962 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 24.3 MB of archives. After unpacking 86.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 35 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 24.3 MB in 3s (7504 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19962 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../29-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../30-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../31-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../32-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../33-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../34-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../35-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../36-libsasl2-modules-db_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../37-libsasl2-2_2.1.28+dfsg1-8_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:amd64. 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Not building database; man-db/auto-update is not 'true'. Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up debhelper (13.20) ... Setting up samtools (1.20-3) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/dwgsim-0.1.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dwgsim_0.1.14-3_source.changes dpkg-buildpackage: info: source package dwgsim dpkg-buildpackage: info: source version 0.1.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/dwgsim-0.1.14' rm -vfr gmon.out *.o a.out *.exe *.dSYM razip bgzip dwgsim *~ *.a *.so.* *.so *.dylib; make[1]: Leaving directory '/build/reproducible-path/dwgsim-0.1.14' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/dwgsim-0.1.14' sed -i 's/occour/occur/' src/dwgsim_opt.c sed -i 's/occour/occur/' debian/dwgsim.1 dh_auto_build make -j42 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dwgsim-0.1.14' cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/dwgsim_opt.c -o src/dwgsim_opt.o In file included from src/dwgsim_opt.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/mut.c -o src/mut.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/contigs.c -o src/contigs.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/regions_bed.c -o src/regions_bed.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/mut_txt.c -o src/mut_txt.o In file included from src/mut_txt.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/mut_bed.c -o src/mut_bed.o In file included from src/mut_bed.c:33: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/mut_vcf.c -o src/mut_vcf.o In file included from src/mut_vcf.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/mut_input.c -o src/mut_input.o In file included from src/mut_input.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.14-3\" src/dwgsim.c -o src/dwgsim.o src/dwgsim.c: In function 'dwgsim_core': src/dwgsim.c:864:35: warning: initialization of 'FILE *' from incompatible pointer type 'struct gzFile_s **' [-Wincompatible-pointer-types] 864 | FILE *fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2; | ^ src/dwgsim.c:867:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 867 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * In file included from src/dwgsim.c:44: /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:875:38: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 875 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:876:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 876 | gzprintf(fpo, "\n+\n%s\n", qstr); | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:885:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 885 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:894:38: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 894 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:895:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 895 | gzprintf(fpo, "\n+\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:897:38: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 897 | gzputc(fpo, qstr[i]); | ^~~ | | | FILE * /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:898:38: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 898 | gzprintf(fpo, "\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:904:39: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 904 | gzprintf(opt->fp_bfast, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx\n", | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:912:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 912 | gzputc(opt->fp_bfast, "ACGTN"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:913:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 913 | gzprintf(opt->fp_bfast, "\n+\n%s\n", qstr); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:916:41: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 916 | gzputc(opt->fp_bfast, 'A'); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:918:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 918 | gzputc(opt->fp_bfast, "01234"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:919:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 919 | gzprintf(opt->fp_bfast, "\n+\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:921:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 921 | gzputc(opt->fp_bfast, qstr[i]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:922:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 922 | gzprintf(opt->fp_bfast, "\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:972:35: warning: initialization of 'FILE *' from incompatible pointer type 'struct gzFile_s **' [-Wincompatible-pointer-types] 972 | FILE *fpo = (0 == j) ? opt->fp_bwa1: opt->fp_bwa2; | ^ src/dwgsim.c:975:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 975 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:983:40: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 983 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:984:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 984 | gzprintf(fpo, "\n+\n%s\n", qstr); | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:993:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 993 | gzprintf(fpo, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx/%d\n", | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:1002:40: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1002 | gzputc(fpo, "ACGTN"[(int)tmp_seq[j][i]]); | ^~~ | | | FILE * /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:1003:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1003 | gzprintf(fpo, "\n+\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:1005:40: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1005 | gzputc(fpo, qstr[i]); | ^~~ | | | FILE * /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:1006:40: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1006 | gzprintf(fpo, "\n"); | ^~~ | | | FILE * /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'FILE *' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:1012:39: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1012 | gzprintf(opt->fp_bfast, "@%s%s%s_%u_%u_%1u_%1u_%1u_%1u_%d:%d:%d_%d:%d:%d_%llx\n", | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:1020:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1020 | gzputc(opt->fp_bfast, "ACGTN"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:1021:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1021 | gzprintf(opt->fp_bfast, "\n+\n%s\n", qstr); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:1024:41: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1024 | gzputc(opt->fp_bfast, 'A'); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:1026:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1026 | gzputc(opt->fp_bfast, "01234"[(int)tmp_seq[j][i]]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:1027:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1027 | gzprintf(opt->fp_bfast, "\n+\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c:1029:43: warning: passing argument 1 of 'gzputc' from incompatible pointer type [-Wincompatible-pointer-types] 1029 | gzputc(opt->fp_bfast, qstr[i]); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1508:35: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1508 | ZEXTERN int ZEXPORT gzputc(gzFile file, int c); | ~~~~~~~^~~~ src/dwgsim.c:1030:43: warning: passing argument 1 of 'gzprintf' from incompatible pointer type [-Wincompatible-pointer-types] 1030 | gzprintf(opt->fp_bfast, "\n"); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1471:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1471 | ZEXTERN int ZEXPORTVA gzprintf(gzFile file, const char *format, ...); | ~~~~~~~^~~~ src/dwgsim.c: In function 'main': src/dwgsim.c:1088:25: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 1088 | opt->fp_bfast = gzopen(fn_tmp, "w"); | ^ src/dwgsim.c:1092:24: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 1092 | opt->fp_bwa1 = gzopen(fn_tmp, "w"); | ^ src/dwgsim.c:1094:24: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 1094 | opt->fp_bwa2 = gzopen(fn_tmp, "w"); | ^ src/dwgsim.c:1104:22: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 1104 | gzclose(opt->fp_bfast); | ~~~^~~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1634:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1634 | ZEXTERN int ZEXPORT gzclose(gzFile file); | ~~~~~~~^~~~ src/dwgsim.c:1107:22: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 1107 | gzclose(opt->fp_bwa1); gzclose(opt->fp_bwa2); | ~~~^~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1634:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1634 | ZEXTERN int ZEXPORT gzclose(gzFile file); | ~~~~~~~^~~~ src/dwgsim.c:1107:45: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 1107 | gzclose(opt->fp_bwa1); gzclose(opt->fp_bwa2); | ~~~^~~~~~~~~ | | | struct gzFile_s ** /usr/include/zlib.h:1634:39: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1634 | ZEXTERN int ZEXPORT gzclose(gzFile file); | ~~~~~~~^~~~ In file included from src/dwgsim.c:46: src/mut.h: At top level: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined 62 | mut_get_ins_long_n(uint8_t *ins, uint32_t *n); | ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined 59 | mut_get_ins_bytes(int32_t n); | ^~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dwgsim-0.1.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=incompatible-pointer-types -Wall -O3 -I. -Wl,-z,relro -Wl,-z,now -o dwgsim src/dwgsim_opt.o src/mut.o src/contigs.o src/regions_bed.o src/mut_txt.o src/mut_bed.o src/mut_vcf.o src/mut_input.o src/dwgsim.o -lm -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/dwgsim-0.1.14' make[1]: Leaving directory '/build/reproducible-path/dwgsim-0.1.14' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/dwgsim-0.1.14' ln -s /usr/share/doc/samtools/examples samtools dh_auto_test make -j42 test make[2]: Entering directory '/build/reproducible-path/dwgsim-0.1.14' if [ -d tmp ]; then rm -r tmp; fi /bin/bash testdata/test.sh /build/reproducible-path/dwgsim-0.1.14/testdata /build/reproducible-path/dwgsim-0.1.14 /build/reproducible-path/dwgsim-0.1.14 [dwgsim_core] seq1 length: 1575 [dwgsim_core] seq2 length: 1584 [dwgsim_core] 2 sequences, total length: 3159 [dwgsim_core] Currently on: 0 [dwgsim_core] 0 [dwgsim_core] 4986 [dwgsim_core] 10000 [dwgsim_core] Complete! make[2]: Leaving directory '/build/reproducible-path/dwgsim-0.1.14' make[1]: Leaving directory '/build/reproducible-path/dwgsim-0.1.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dwgsim/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dwgsim' in '../dwgsim_0.1.14-3_amd64.deb'. dpkg-deb: building package 'dwgsim-dbgsym' in '../dwgsim-dbgsym_0.1.14-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dwgsim_0.1.14-3_amd64.buildinfo dpkg-genchanges --build=binary -O../dwgsim_0.1.14-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3629365/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3629365 and its subdirectories I: Current time: Sun Jan 4 05:22:00 +14 2026 I: pbuilder-time-stamp: 1767453720