I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 26 10:43:17 +14 2024 I: pbuilder-time-stamp: 1729888997 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cwl-utils_0.35-1.dsc] I: copying [./cwl-utils_0.35.orig.tar.gz] I: copying [./cwl-utils_0.35-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Oct 23 09:54:30 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cwl-utils_0.35-1.dsc: no acceptable signature found dpkg-source: info: extracting cwl-utils in cwl-utils-0.35 dpkg-source: info: unpacking cwl-utils_0.35.orig.tar.gz dpkg-source: info: unpacking cwl-utils_0.35-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 25 20:43 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=8acee47c0cdc47a098548c7179d94343 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3500634 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2cvzSiqf/pbuilderrc_UxPs --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2cvzSiqf/b2 --logfile b2/build.log cwl-utils_0.35-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, cwl-upgrader, cwlformat, python3-all, python3-cachecontrol, python3-packaging, python3-rdflib, python3-requests, python3-schema-salad (>= 8.3), python3-filelock, python3-setuptools, python3-pytest, python3-pytest-mock, nodejs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 21880 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on cwl-upgrader; however: Package cwl-upgrader is not installed. pbuilder-satisfydepends-dummy depends on cwlformat; however: Package cwlformat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-cachecontrol; however: Package python3-cachecontrol is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-schema-salad (>= 8.3); however: Package python3-schema-salad is not installed. pbuilder-satisfydepends-dummy depends on python3-filelock; however: Package python3-filelock is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on nodejs; however: Package nodejs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cwl-upgrader{a} cwlformat{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcares2{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnode115{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} node-acorn{a} node-balanced-match{a} node-brace-expansion{a} node-cjs-module-lexer{a} node-minimatch{a} node-undici{a} node-xtend{a} nodejs{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-build{a} python3-cachecontrol{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-filelock{a} python3-html5lib{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-msgpack{a} python3-mypy-extensions{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-rdflib{a} python3-requests{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-schema-salad{a} python3-setuptools{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-webencodings{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: black curl cwltool krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx nodejs-doc python3-pygments python3-sparqlwrapper wget 0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 46.8 MB of archives. After unpacking 195 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 46 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [130 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.3.2-4 [117 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-msgpack amd64 1.0.3-3+b2 [80.4 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-cachecontrol all 0.14.0-1 [18.6 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-mistune all 3.0.2-2 [33.2 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-html5lib all 1.2-1 [92.2 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-rdflib all 7.1.0-1 [467 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 python3-filelock all 3.16.1-1 [12.6 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 python3-schema-salad amd64 8.7.20240905150001-1 [1001 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 cwl-upgrader all 1.2.11-1 [15.7 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 cwlformat all 2022.02.18-3 [7584 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 76 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20240824 [109 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libcares2 amd64 1.34.2-1 [92.7 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 node-xtend all 4.0.2-3 [3932 B] Get: 92 http://deb.debian.org/debian trixie/main amd64 nodejs amd64 20.17.0+dfsg-2 [347 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [128 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 node-cjs-module-lexer all 1.2.3+dfsg-1 [30.6 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 node-balanced-match all 2.0.0-1 [4872 B] Get: 96 http://deb.debian.org/debian trixie/main amd64 node-brace-expansion all 2.0.1+~1.1.0-1 [7912 B] Get: 97 http://deb.debian.org/debian trixie/main amd64 node-minimatch all 9.0.3-5 [76.7 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 node-undici all 5.28.4+dfsg1+~cs23.12.11-2 [314 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 libnode115 amd64 20.17.0+dfsg-2 [12.1 MB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-wheel all 0.44.0-2 [53.4 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-pytest-mock all 3.14.0-1 [18.2 kB] Fetched 46.8 MB in 6s (8465 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21880 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_amd64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23272 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. 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Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 25 20:45:44 UTC 2024. Universal Time is now: Fri Oct 25 20:45:44 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up node-balanced-match (2.0.0-1) ... Setting up node-brace-expansion (2.0.1+~1.1.0-1) ... Setting up libcares2:amd64 (1.34.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up node-minimatch (9.0.3-5) ... Setting up node-xtend (4.0.2-3) ... Setting up openssl (3.3.2-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-webencodings (0.5.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyproject-hooks (1.1.0-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-html5lib (1.2-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rdflib (7.1.0-1) ... Setting up python3-msgpack (1.0.3-3+b2) ... Setting up python3-build (1.2.2-1) ... Setting up python3-mistune (3.0.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-filelock (3.16.1-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-charset-normalizer (3.3.2-4) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pytest-mock (3.14.0-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up cwlformat (2022.02.18-3) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-cachecontrol (0.14.0-1) ... Setting up dh-python (6.20240824) ... Setting up pybuild-plugin-pyproject (6.20240824) ... Setting up python3-schema-salad (8.7.20240905150001-1) ... Setting up cwl-upgrader (1.2.11-1) ... Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... Setting up libnode115:amd64 (20.17.0+dfsg-2) ... Setting up nodejs (20.17.0+dfsg-2) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/cwl-utils-0.35/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cwl-utils_0.35-1_source.changes dpkg-buildpackage: info: source package cwl-utils dpkg-buildpackage: info: source version 0.35-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from cwl-utils-0.35/debian/source/options: --extend-diff-ignore=^[^/]+.egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cwl-utils-0.35/.pybuild/cpython3_3.12_cwl-utils * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/cwl_utils copying cwl_utils/sandboxjs.py -> build/lib/cwl_utils copying cwl_utils/file_formats.py -> build/lib/cwl_utils copying cwl_utils/cwl_v1_0_expression_refactor.py -> build/lib/cwl_utils copying cwl_utils/graph_split.py -> build/lib/cwl_utils copying cwl_utils/types.py -> build/lib/cwl_utils copying cwl_utils/pack.py -> build/lib/cwl_utils copying cwl_utils/docker_extract.py -> build/lib/cwl_utils copying cwl_utils/errors.py -> build/lib/cwl_utils copying cwl_utils/schemadef.py -> build/lib/cwl_utils copying cwl_utils/__init__.py -> build/lib/cwl_utils copying cwl_utils/cite_extract.py -> build/lib/cwl_utils copying cwl_utils/expression_refactor.py -> build/lib/cwl_utils copying cwl_utils/singularity.py -> build/lib/cwl_utils copying cwl_utils/expression.py -> build/lib/cwl_utils copying cwl_utils/image_puller.py -> build/lib/cwl_utils copying cwl_utils/cwl_v1_1_expression_refactor.py -> build/lib/cwl_utils copying cwl_utils/normalizer.py -> build/lib/cwl_utils copying cwl_utils/cwl_v1_2_expression_refactor.py -> build/lib/cwl_utils copying cwl_utils/utils.py -> build/lib/cwl_utils copying cwl_utils/__meta__.py -> build/lib/cwl_utils copying cwl_utils/loghandler.py -> build/lib/cwl_utils creating build/lib/cwl_utils/parser copying cwl_utils/parser/cwl_v1_1.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/cwl_v1_0_utils.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/cwl_v1_1_utils.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/cwl_v1_2.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/cwl_v1_0.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/cwl_v1_2_utils.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/__init__.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/latest.py -> build/lib/cwl_utils/parser copying cwl_utils/parser/utils.py -> build/lib/cwl_utils/parser creating build/lib/cwl_utils/tests copying tests/test_cite_extract.py -> build/lib/cwl_utils/tests copying tests/test_examples.py -> build/lib/cwl_utils/tests copying tests/test_parser.py -> build/lib/cwl_utils/tests copying tests/test_graph_split.py -> build/lib/cwl_utils/tests copying tests/test_parser_utils.py -> build/lib/cwl_utils/tests copying tests/test_subscope.py -> build/lib/cwl_utils/tests copying tests/__init__.py -> build/lib/cwl_utils/tests copying tests/load_cwl_by_path.py -> build/lib/cwl_utils/tests copying tests/test_format.py -> build/lib/cwl_utils/tests copying tests/test_meta.py -> build/lib/cwl_utils/tests copying tests/test_docker_extract.py -> build/lib/cwl_utils/tests copying tests/test_etools_to_clt.py -> build/lib/cwl_utils/tests copying tests/test_utils.py -> build/lib/cwl_utils/tests copying tests/test_js_sandbox.py -> build/lib/cwl_utils/tests copying tests/util.py -> build/lib/cwl_utils/tests copying tests/test_packing.py -> build/lib/cwl_utils/tests running egg_info creating cwl_utils.egg-info writing cwl_utils.egg-info/PKG-INFO writing dependency_links to cwl_utils.egg-info/dependency_links.txt writing entry points to cwl_utils.egg-info/entry_points.txt writing requirements to cwl_utils.egg-info/requires.txt writing top-level names to cwl_utils.egg-info/top_level.txt writing manifest file 'cwl_utils.egg-info/SOURCES.txt' reading manifest file 'cwl_utils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENSE.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'cwl_utils.egg-info/SOURCES.txt' copying cwl_utils/cwlNodeEngine.js -> build/lib/cwl_utils copying cwl_utils/cwlNodeEngineJSConsole.js -> build/lib/cwl_utils copying cwl_utils/cwlNodeEngineWithContext.js -> build/lib/cwl_utils copying cwl_utils/py.typed -> build/lib/cwl_utils creating build/lib/cwl_utils/testdata copying testdata/EDAM_subset.owl -> build/lib/cwl_utils/testdata copying testdata/cond-single-source-wf-003.1.cwl -> build/lib/cwl_utils/testdata copying testdata/cond-single-source-wf-004.1.cwl -> build/lib/cwl_utils/testdata copying testdata/cond-single-source-wf-005.1.cwl -> build/lib/cwl_utils/testdata copying testdata/cond-wf-003.1.cwl -> build/lib/cwl_utils/testdata copying testdata/cond-wf-004.1.cwl -> build/lib/cwl_utils/testdata copying testdata/cond-wf-005.1.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines6-single-source-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines6-single-source-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines6-single-source-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines6-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines6-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines6-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines7-single-source-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines7-single-source-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines7-single-source-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines7-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines7-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/count-lines7-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/debian_image_id.cwl -> build/lib/cwl_utils/testdata copying testdata/dir4-job.yml -> build/lib/cwl_utils/testdata copying testdata/dockstore-tool-md5sum.cwl -> build/lib/cwl_utils/testdata copying testdata/dockstore-tool-md5sum_v11.cwl -> build/lib/cwl_utils/testdata copying testdata/dockstore-tool-md5sum_v12.cwl -> build/lib/cwl_utils/testdata copying testdata/echo-tool-packed.cwl -> build/lib/cwl_utils/testdata copying testdata/echo_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/echo_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/echo_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/env-job3.yaml -> build/lib/cwl_utils/testdata copying testdata/foo-array.cwl -> build/lib/cwl_utils/testdata copying testdata/foo.cwl -> build/lib/cwl_utils/testdata copying testdata/formattest-job.json -> build/lib/cwl_utils/testdata copying testdata/formattest2.cwl -> build/lib/cwl_utils/testdata copying testdata/formattest2_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/formattest2_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/gx_edam.ttl -> build/lib/cwl_utils/testdata copying testdata/js-expr-req-wf.cwl -> build/lib/cwl_utils/testdata copying testdata/lib.js -> build/lib/cwl_utils/testdata copying testdata/md5sum.cwl -> build/lib/cwl_utils/testdata copying testdata/md5sum.input -> build/lib/cwl_utils/testdata copying testdata/md5sum.json -> build/lib/cwl_utils/testdata copying testdata/md5sum_v11.cwl -> build/lib/cwl_utils/testdata copying testdata/md5sum_v12.cwl -> build/lib/cwl_utils/testdata copying testdata/nested-array-job.yml -> build/lib/cwl_utils/testdata copying testdata/record-output-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/record-output-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/record-output-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/record-output_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/record-output_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/record-output_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/revsort-run-1-packed.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf1_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf1_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf1_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf2_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf2_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf2_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf3_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf3_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/scatter-wf3_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/seqtk_seq.cwl -> build/lib/cwl_utils/testdata copying testdata/stdout-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/stdout-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/stdout-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/step-valuefrom2-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/step-valuefrom2-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/step-valuefrom2-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/step-valuefrom3-wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/step-valuefrom3-wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/step-valuefrom3-wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/step_valuefrom5_wf_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/step_valuefrom5_wf_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/step_valuefrom5_wf_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/step_valuefrom5_wf_with_id_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/step_valuefrom5_wf_with_id_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/step_valuefrom5_wf_with_id_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/wc3-tool_v1_0.cwl -> build/lib/cwl_utils/testdata copying testdata/wc3-tool_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/wc3-tool_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/wf2.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_format_expr.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_format_expr_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_format_expr_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_sf_expr.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_sf_expr_array.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_sf_expr_array_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_sf_expr_array_v1_2.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_sf_expr_v1_1.cwl -> build/lib/cwl_utils/testdata copying testdata/workflow_input_sf_expr_v1_2.cwl -> build/lib/cwl_utils/testdata creating build/lib/cwl_utils/testdata/remote-cwl copying testdata/remote-cwl/tool1.cwl -> build/lib/cwl_utils/testdata/remote-cwl copying testdata/remote-cwl/tool2.cwl -> build/lib/cwl_utils/testdata/remote-cwl copying testdata/remote-cwl/wf1.cwl -> build/lib/cwl_utils/testdata/remote-cwl creating build/lib/cwl_utils/testdata/checker_wf copying testdata/checker_wf/broken-wf.cwl -> build/lib/cwl_utils/testdata/checker_wf copying testdata/checker_wf/broken-wf2.cwl -> build/lib/cwl_utils/testdata/checker_wf copying testdata/checker_wf/broken-wf3.cwl -> build/lib/cwl_utils/testdata/checker_wf copying testdata/checker_wf/cat.cwl -> build/lib/cwl_utils/testdata/checker_wf copying testdata/checker_wf/echo.cwl -> build/lib/cwl_utils/testdata/checker_wf copying testdata/checker_wf/functional-wf.cwl -> build/lib/cwl_utils/testdata/checker_wf creating build/lib/cwl_utils/testdata/types copying testdata/types/array.yml -> build/lib/cwl_utils/testdata/types copying testdata/types/recursive.yml -> build/lib/cwl_utils/testdata/types copying testdata/types/singletype.yml -> build/lib/cwl_utils/testdata/types copying testdata/types/singletype2.yml -> build/lib/cwl_utils/testdata/types copying testdata/types/testtypes.yml -> build/lib/cwl_utils/testdata/types creating build/lib/cwl_utils/testdata/workflows copying testdata/workflows/count-lines16-wf.cwl -> build/lib/cwl_utils/testdata/workflows copying testdata/workflows/import-in-type.cwl -> build/lib/cwl_utils/testdata/workflows copying testdata/workflows/parseInt-tool.cwl -> build/lib/cwl_utils/testdata/workflows copying testdata/workflows/scatter-wf4.cwl -> build/lib/cwl_utils/testdata/workflows copying testdata/workflows/type-import.yaml -> build/lib/cwl_utils/testdata/workflows copying testdata/workflows/wc-tool.cwl -> build/lib/cwl_utils/testdata/workflows copying testdata/workflows/wf5.cwl -> build/lib/cwl_utils/testdata/workflows installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/cwl_utils copying build/lib/cwl_utils/sandboxjs.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/file_formats.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/cwl_v1_0_expression_refactor.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/cwlNodeEngineJSConsole.js -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/graph_split.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/types.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/pack.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/docker_extract.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/errors.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/schemadef.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/__init__.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/cite_extract.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/py.typed -> build/bdist.linux-x86_64/wheel/./cwl_utils creating build/bdist.linux-x86_64/wheel/cwl_utils/tests copying build/lib/cwl_utils/tests/test_cite_extract.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_examples.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_parser.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_graph_split.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_parser_utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_subscope.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/load_cwl_by_path.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_format.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_meta.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_docker_extract.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_etools_to_clt.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_js_sandbox.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/util.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/tests/test_packing.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/tests copying build/lib/cwl_utils/expression_refactor.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/singularity.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/expression.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/image_puller.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/cwl_v1_1_expression_refactor.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/cwlNodeEngineWithContext.js -> build/bdist.linux-x86_64/wheel/./cwl_utils creating build/bdist.linux-x86_64/wheel/cwl_utils/parser copying build/lib/cwl_utils/parser/cwl_v1_1.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/cwl_v1_0_utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/cwl_v1_1_utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/cwl_v1_2.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/cwl_v1_0.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/cwl_v1_2_utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/__init__.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/latest.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/parser/utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils/parser copying build/lib/cwl_utils/normalizer.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/cwl_v1_2_expression_refactor.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/utils.py -> build/bdist.linux-x86_64/wheel/./cwl_utils creating build/bdist.linux-x86_64/wheel/cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_format_expr_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines7-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata creating build/bdist.linux-x86_64/wheel/cwl_utils/testdata/remote-cwl copying build/lib/cwl_utils/testdata/remote-cwl/tool1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/remote-cwl copying build/lib/cwl_utils/testdata/remote-cwl/wf1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/remote-cwl copying build/lib/cwl_utils/testdata/remote-cwl/tool2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/remote-cwl copying build/lib/cwl_utils/testdata/scatter-wf3_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf3_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines7-single-source-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/stdout-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata creating build/bdist.linux-x86_64/wheel/cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/type-import.yaml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/scatter-wf4.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/parseInt-tool.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/wf5.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/wc-tool.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/count-lines16-wf.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/workflows/import-in-type.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/workflows copying build/lib/cwl_utils/testdata/wc3-tool_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/md5sum.input -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines7-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines7-single-source-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines7-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/stdout-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/wf2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf2_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_format_expr.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step-valuefrom2-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/formattest2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/echo_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/md5sum_v11.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf1_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/stdout-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step-valuefrom3-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/record-output-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/md5sum.json -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines6-single-source-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines6-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/env-job3.yaml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/wc3-tool_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_array.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/formattest-job.json -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/md5sum_v12.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata creating build/bdist.linux-x86_64/wheel/cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/checker_wf/cat.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/checker_wf/broken-wf2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/checker_wf/broken-wf3.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/checker_wf/echo.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/checker_wf/functional-wf.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/checker_wf/broken-wf.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/checker_wf copying build/lib/cwl_utils/testdata/count-lines7-single-source-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines6-single-source-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step-valuefrom3-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/md5sum.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines6-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/dockstore-tool-md5sum_v12.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf1_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/dockstore-tool-md5sum_v11.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/record-output-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/echo_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/revsort-run-1-packed.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/dir4-job.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/EDAM_subset.owl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf3_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/record-output_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/gx_edam.ttl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/cond-single-source-wf-003.1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_array_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/formattest2_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_array_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata creating build/bdist.linux-x86_64/wheel/cwl_utils/testdata/types copying build/lib/cwl_utils/testdata/types/array.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/types copying build/lib/cwl_utils/testdata/types/singletype2.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/types copying build/lib/cwl_utils/testdata/types/recursive.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/types copying build/lib/cwl_utils/testdata/types/singletype.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/types copying build/lib/cwl_utils/testdata/types/testtypes.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata/types copying build/lib/cwl_utils/testdata/step-valuefrom3-wf_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_format_expr_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/foo.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf1_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/cond-single-source-wf-005.1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/seqtk_seq.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/foo-array.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines6-single-source-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/cond-wf-004.1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/nested-array-job.yml -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/cond-wf-003.1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/debian_image_id.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/record-output-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf2_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/formattest2_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step-valuefrom2-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/cond-wf-005.1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/wc3-tool_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step-valuefrom2-wf_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/echo-tool-packed.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/echo_v1_0.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/dockstore-tool-md5sum.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/cond-single-source-wf-004.1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/workflow_input_sf_expr.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/js-expr-req-wf.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/count-lines6-wf_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/scatter-wf2_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/record-output_v1_2.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/lib.js -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/testdata/record-output_v1_1.cwl -> build/bdist.linux-x86_64/wheel/./cwl_utils/testdata copying build/lib/cwl_utils/cwlNodeEngine.js -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/__meta__.py -> build/bdist.linux-x86_64/wheel/./cwl_utils copying build/lib/cwl_utils/loghandler.py -> build/bdist.linux-x86_64/wheel/./cwl_utils running install_egg_info Copying cwl_utils.egg-info to build/bdist.linux-x86_64/wheel/./cwl_utils-0.35.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/cwl_utils-0.35.dist-info/WHEEL creating '/build/reproducible-path/cwl-utils-0.35/.pybuild/cpython3_3.12_cwl-utils/.tmp-zj2edgqr/cwl_utils-0.35-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'cwl_utils/__init__.py' adding 'cwl_utils/__meta__.py' adding 'cwl_utils/cite_extract.py' adding 'cwl_utils/cwlNodeEngine.js' adding 'cwl_utils/cwlNodeEngineJSConsole.js' adding 'cwl_utils/cwlNodeEngineWithContext.js' adding 'cwl_utils/cwl_v1_0_expression_refactor.py' adding 'cwl_utils/cwl_v1_1_expression_refactor.py' adding 'cwl_utils/cwl_v1_2_expression_refactor.py' adding 'cwl_utils/docker_extract.py' adding 'cwl_utils/errors.py' adding 'cwl_utils/expression.py' adding 'cwl_utils/expression_refactor.py' adding 'cwl_utils/file_formats.py' adding 'cwl_utils/graph_split.py' adding 'cwl_utils/image_puller.py' adding 'cwl_utils/loghandler.py' adding 'cwl_utils/normalizer.py' adding 'cwl_utils/pack.py' adding 'cwl_utils/py.typed' adding 'cwl_utils/sandboxjs.py' adding 'cwl_utils/schemadef.py' adding 'cwl_utils/singularity.py' adding 'cwl_utils/types.py' adding 'cwl_utils/utils.py' adding 'cwl_utils/parser/__init__.py' adding 'cwl_utils/parser/cwl_v1_0.py' adding 'cwl_utils/parser/cwl_v1_0_utils.py' adding 'cwl_utils/parser/cwl_v1_1.py' adding 'cwl_utils/parser/cwl_v1_1_utils.py' adding 'cwl_utils/parser/cwl_v1_2.py' adding 'cwl_utils/parser/cwl_v1_2_utils.py' adding 'cwl_utils/parser/latest.py' adding 'cwl_utils/parser/utils.py' adding 'cwl_utils/testdata/EDAM_subset.owl' adding 'cwl_utils/testdata/cond-single-source-wf-003.1.cwl' adding 'cwl_utils/testdata/cond-single-source-wf-004.1.cwl' adding 'cwl_utils/testdata/cond-single-source-wf-005.1.cwl' adding 'cwl_utils/testdata/cond-wf-003.1.cwl' adding 'cwl_utils/testdata/cond-wf-004.1.cwl' adding 'cwl_utils/testdata/cond-wf-005.1.cwl' adding 'cwl_utils/testdata/count-lines6-single-source-wf_v1_0.cwl' adding 'cwl_utils/testdata/count-lines6-single-source-wf_v1_1.cwl' adding 'cwl_utils/testdata/count-lines6-single-source-wf_v1_2.cwl' adding 'cwl_utils/testdata/count-lines6-wf_v1_0.cwl' adding 'cwl_utils/testdata/count-lines6-wf_v1_1.cwl' adding 'cwl_utils/testdata/count-lines6-wf_v1_2.cwl' adding 'cwl_utils/testdata/count-lines7-single-source-wf_v1_0.cwl' adding 'cwl_utils/testdata/count-lines7-single-source-wf_v1_1.cwl' adding 'cwl_utils/testdata/count-lines7-single-source-wf_v1_2.cwl' adding 'cwl_utils/testdata/count-lines7-wf_v1_0.cwl' adding 'cwl_utils/testdata/count-lines7-wf_v1_1.cwl' adding 'cwl_utils/testdata/count-lines7-wf_v1_2.cwl' adding 'cwl_utils/testdata/debian_image_id.cwl' adding 'cwl_utils/testdata/dir4-job.yml' adding 'cwl_utils/testdata/dockstore-tool-md5sum.cwl' adding 'cwl_utils/testdata/dockstore-tool-md5sum_v11.cwl' adding 'cwl_utils/testdata/dockstore-tool-md5sum_v12.cwl' adding 'cwl_utils/testdata/echo-tool-packed.cwl' adding 'cwl_utils/testdata/echo_v1_0.cwl' adding 'cwl_utils/testdata/echo_v1_1.cwl' adding 'cwl_utils/testdata/echo_v1_2.cwl' adding 'cwl_utils/testdata/env-job3.yaml' adding 'cwl_utils/testdata/foo-array.cwl' adding 'cwl_utils/testdata/foo.cwl' adding 'cwl_utils/testdata/formattest-job.json' adding 'cwl_utils/testdata/formattest2.cwl' adding 'cwl_utils/testdata/formattest2_v1_0.cwl' adding 'cwl_utils/testdata/formattest2_v1_1.cwl' adding 'cwl_utils/testdata/gx_edam.ttl' adding 'cwl_utils/testdata/js-expr-req-wf.cwl' adding 'cwl_utils/testdata/lib.js' adding 'cwl_utils/testdata/md5sum.cwl' adding 'cwl_utils/testdata/md5sum.input' adding 'cwl_utils/testdata/md5sum.json' adding 'cwl_utils/testdata/md5sum_v11.cwl' adding 'cwl_utils/testdata/md5sum_v12.cwl' adding 'cwl_utils/testdata/nested-array-job.yml' adding 'cwl_utils/testdata/record-output-wf_v1_0.cwl' adding 'cwl_utils/testdata/record-output-wf_v1_1.cwl' adding 'cwl_utils/testdata/record-output-wf_v1_2.cwl' adding 'cwl_utils/testdata/record-output_v1_0.cwl' adding 'cwl_utils/testdata/record-output_v1_1.cwl' adding 'cwl_utils/testdata/record-output_v1_2.cwl' adding 'cwl_utils/testdata/revsort-run-1-packed.cwl' adding 'cwl_utils/testdata/scatter-wf1_v1_0.cwl' adding 'cwl_utils/testdata/scatter-wf1_v1_1.cwl' adding 'cwl_utils/testdata/scatter-wf1_v1_2.cwl' adding 'cwl_utils/testdata/scatter-wf2_v1_0.cwl' adding 'cwl_utils/testdata/scatter-wf2_v1_1.cwl' adding 'cwl_utils/testdata/scatter-wf2_v1_2.cwl' adding 'cwl_utils/testdata/scatter-wf3_v1_0.cwl' adding 'cwl_utils/testdata/scatter-wf3_v1_1.cwl' adding 'cwl_utils/testdata/scatter-wf3_v1_2.cwl' adding 'cwl_utils/testdata/seqtk_seq.cwl' adding 'cwl_utils/testdata/stdout-wf_v1_0.cwl' adding 'cwl_utils/testdata/stdout-wf_v1_1.cwl' adding 'cwl_utils/testdata/stdout-wf_v1_2.cwl' adding 'cwl_utils/testdata/step-valuefrom2-wf_v1_0.cwl' adding 'cwl_utils/testdata/step-valuefrom2-wf_v1_1.cwl' adding 'cwl_utils/testdata/step-valuefrom2-wf_v1_2.cwl' adding 'cwl_utils/testdata/step-valuefrom3-wf_v1_0.cwl' adding 'cwl_utils/testdata/step-valuefrom3-wf_v1_1.cwl' adding 'cwl_utils/testdata/step-valuefrom3-wf_v1_2.cwl' adding 'cwl_utils/testdata/step_valuefrom5_wf_v1_0.cwl' adding 'cwl_utils/testdata/step_valuefrom5_wf_v1_1.cwl' adding 'cwl_utils/testdata/step_valuefrom5_wf_v1_2.cwl' adding 'cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_0.cwl' adding 'cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_1.cwl' adding 'cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_2.cwl' adding 'cwl_utils/testdata/wc3-tool_v1_0.cwl' adding 'cwl_utils/testdata/wc3-tool_v1_1.cwl' adding 'cwl_utils/testdata/wc3-tool_v1_2.cwl' adding 'cwl_utils/testdata/wf2.cwl' adding 'cwl_utils/testdata/workflow_input_format_expr.cwl' adding 'cwl_utils/testdata/workflow_input_format_expr_v1_1.cwl' adding 'cwl_utils/testdata/workflow_input_format_expr_v1_2.cwl' adding 'cwl_utils/testdata/workflow_input_sf_expr.cwl' adding 'cwl_utils/testdata/workflow_input_sf_expr_array.cwl' adding 'cwl_utils/testdata/workflow_input_sf_expr_array_v1_1.cwl' adding 'cwl_utils/testdata/workflow_input_sf_expr_array_v1_2.cwl' adding 'cwl_utils/testdata/workflow_input_sf_expr_v1_1.cwl' adding 'cwl_utils/testdata/workflow_input_sf_expr_v1_2.cwl' adding 'cwl_utils/testdata/checker_wf/broken-wf.cwl' adding 'cwl_utils/testdata/checker_wf/broken-wf2.cwl' adding 'cwl_utils/testdata/checker_wf/broken-wf3.cwl' adding 'cwl_utils/testdata/checker_wf/cat.cwl' adding 'cwl_utils/testdata/checker_wf/echo.cwl' adding 'cwl_utils/testdata/checker_wf/functional-wf.cwl' adding 'cwl_utils/testdata/remote-cwl/tool1.cwl' adding 'cwl_utils/testdata/remote-cwl/tool2.cwl' adding 'cwl_utils/testdata/remote-cwl/wf1.cwl' adding 'cwl_utils/testdata/types/array.yml' adding 'cwl_utils/testdata/types/recursive.yml' adding 'cwl_utils/testdata/types/singletype.yml' adding 'cwl_utils/testdata/types/singletype2.yml' adding 'cwl_utils/testdata/types/testtypes.yml' adding 'cwl_utils/testdata/workflows/count-lines16-wf.cwl' adding 'cwl_utils/testdata/workflows/import-in-type.cwl' adding 'cwl_utils/testdata/workflows/parseInt-tool.cwl' adding 'cwl_utils/testdata/workflows/scatter-wf4.cwl' adding 'cwl_utils/testdata/workflows/type-import.yaml' adding 'cwl_utils/testdata/workflows/wc-tool.cwl' adding 'cwl_utils/testdata/workflows/wf5.cwl' adding 'cwl_utils/tests/__init__.py' adding 'cwl_utils/tests/load_cwl_by_path.py' adding 'cwl_utils/tests/test_cite_extract.py' adding 'cwl_utils/tests/test_docker_extract.py' adding 'cwl_utils/tests/test_etools_to_clt.py' adding 'cwl_utils/tests/test_examples.py' adding 'cwl_utils/tests/test_format.py' adding 'cwl_utils/tests/test_graph_split.py' adding 'cwl_utils/tests/test_js_sandbox.py' adding 'cwl_utils/tests/test_meta.py' adding 'cwl_utils/tests/test_packing.py' adding 'cwl_utils/tests/test_parser.py' adding 'cwl_utils/tests/test_parser_utils.py' adding 'cwl_utils/tests/test_subscope.py' adding 'cwl_utils/tests/test_utils.py' adding 'cwl_utils/tests/util.py' adding 'cwl_utils-0.35.dist-info/LICENSE' adding 'cwl_utils-0.35.dist-info/METADATA' adding 'cwl_utils-0.35.dist-info/WHEEL' adding 'cwl_utils-0.35.dist-info/entry_points.txt' adding 'cwl_utils-0.35.dist-info/top_level.txt' adding 'cwl_utils-0.35.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built cwl_utils-0.35-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/cwl-utils-0.35/.pybuild/cpython3_3.12_cwl-utils/build; python3.12 -m pytest -k 'not (test_load_document_with_remote_uri or test_graph_split or test_remote_packing)' ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/cwl-utils-0.35 configfile: pyproject.toml plugins: mock-3.14.0, typeguard-4.3.0 collected 184 items / 6 deselected / 178 selected cwl_utils/tests/test_cite_extract.py .. [ 1%] cwl_utils/tests/test_docker_extract.py sssssssssssssss [ 9%] cwl_utils/tests/test_etools_to_clt.py ................... [ 20%] cwl_utils/tests/test_examples.py . [ 20%] cwl_utils/tests/test_format.py ................ [ 29%] cwl_utils/tests/test_js_sandbox.py ......ssss. [ 35%] cwl_utils/tests/test_packing.py ........ [ 40%] cwl_utils/tests/test_parser.py .......... [ 46%] cwl_utils/tests/test_parser_utils.py ................................... [ 65%] ......................................................... [ 97%] cwl_utils/tests/test_subscope.py ... [ 99%] cwl_utils/tests/test_utils.py . [100%] =============================== warnings summary =============================== cwl_utils/tests/util.py:6 /build/reproducible-path/cwl-utils-0.35/.pybuild/cpython3_3.12_cwl-utils/build/cwl_utils/tests/util.py:6: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import Requirement, ResolutionError, resource_filename ../../../../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 /usr/lib/python3/dist-packages/cwlformat/formatter.py:23: DeprecationWarning: read_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. key_order_dict = yaml.load(read_text("cwlformat", "keyorder.yml")) ../../../../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 /usr/lib/python3.12/importlib/resources/_legacy.py:79: DeprecationWarning: open_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. with open_text(package, resource, encoding, errors) as fp: -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 159 passed, 19 skipped, 6 deselected, 3 warnings in 41.54s ========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_install -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/cwl-utils-0.35' rm -Rf debian/python3-cwl-utils/usr/bin find debian/python3-cwl-utils -name "*.cwl" | xargs chmod a+x make[1]: Leaving directory '/build/reproducible-path/cwl-utils-0.35' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-cwl-utils: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-cwl-utils: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cwl-utils' in '../python3-cwl-utils_0.35-1_all.deb'. dpkg-deb: building package 'cwl-utils' in '../cwl-utils_0.35-1_all.deb'. dpkg-genbuildinfo --build=binary -O../cwl-utils_0.35-1_amd64.buildinfo dpkg-genchanges --build=binary -O../cwl-utils_0.35-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cwl-utils-0.35/debian/source/options: --extend-diff-ignore=^[^/]+.egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3500634/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3500634 and its subdirectories I: Current time: Sat Oct 26 10:49:16 +14 2024 I: pbuilder-time-stamp: 1729889356