I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 11 09:39:13 +14 2025 I: pbuilder-time-stamp: 1749584353 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cassiopee_1.0.9-4.dsc] I: copying [./cassiopee_1.0.9.orig.tar.gz] I: copying [./cassiopee_1.0.9-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 18 11:33:59 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cassiopee_1.0.9-4.dsc: no acceptable signature found dpkg-source: info: extracting cassiopee in cassiopee-1.0.9 dpkg-source: info: unpacking cassiopee_1.0.9.orig.tar.gz dpkg-source: info: unpacking cassiopee_1.0.9-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 10 19:39 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=72b812c378d14656ba34910ff2226412 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1923538 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oc1KbhtH/pbuilderrc_5GSK --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oc1KbhtH/b2 --logfile b2/build.log cassiopee_1.0.9-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 17:51 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libgoogle-glog-dev; however: Package libgoogle-glog-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libgflags-dev{a} libgflags2.2{a} libgoogle-glog-dev{a} libgoogle-glog0v6t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libllvm16t64{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libunwind-dev{a} libunwind8{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After unpacking 633 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1~rc2-1 [22.6 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.7.1-3 [441 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.48.0-1.1 [147 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.29.2-2 [2167 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.29.2-2 [10.7 MB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 49 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 libllvm16t64 amd64 1:16.0.6-26 [23.1 MB] Get: 59 http://deb.debian.org/debian trixie/main amd64 libclang-cpp16t64 amd64 1:16.0.6-26 [11.5 MB] Get: 60 http://deb.debian.org/debian trixie/main amd64 libclang1-16t64 amd64 1:16.0.6-26 [6591 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-2.1+b1 [10.6 MB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-2.1+b1 [325 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-2.1+b1 [342 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-2.1+b1 [261 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 70 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83.0 amd64 1.83.0-2.1+b1 [332 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libboost-serialization1.83-dev amd64 1.83.0-2.1+b1 [372 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 73 http://deb.debian.org/debian trixie/main amd64 libcppunit-1.15-0 amd64 1.15.1-4+b1 [151 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libcppunit-dev amd64 1.15.1-4+b1 [209 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libgflags2.2 amd64 2.2.2-2 [83.5 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libgflags-dev amd64 2.2.2-2 [100 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libunwind8 amd64 1.6.2-3+b1 [51.7 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libgoogle-glog0v6t64 amd64 0.6.0-2.1 [66.1 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libunwind-dev amd64 1.6.2-3+b1 [437 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libgoogle-glog-dev amd64 0.6.0-2.1 [102 kB] Fetched 114 MB in 1s (121 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_amd64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/cassiopee-1.0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cassiopee_1.0.9-4_source.changes dpkg-buildpackage: info: source package cassiopee dpkg-buildpackage: info: source version 1.0.9-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: iostreams serialization -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen missing components: dot -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cassiopee-1.0.9 -B/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/depend make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/depend make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/CMakeFiles/doc.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src/CMakeFiles/cassie.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/build make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/build make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 11%] Generating API documentation with Doxygen cd /build/reproducible-path/cassiopee-1.0.9 && /usr/bin/doxygen /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile [ 22%] Building CXX object src/CMakeFiles/cassie.dir/cassiopee.cxx.o cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -Dcassie_EXPORTS -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/CMakeFiles/cassie.dir/cassiopee.cxx.o -MF CMakeFiles/cassie.dir/cassiopee.cxx.o.d -o CMakeFiles/cassie.dir/cassiopee.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx warning: Tag 'TCL_SUBST' at line 203 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SYMBOL_CACHE_SIZE' at line 327 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 547 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 839 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 935 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 941 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1132 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1159 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1297 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1395 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1401 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1566 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1578 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1587 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1617 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1622 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1762 of file '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:324: warning: Compound per_position is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:223: warning: Member seq_length (variable) of class CassieIndexer is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:353: warning: Member morphisms (variable) of class CassieSearch is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:424: warning: Member pattern_length (variable) of class CassieSearch is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:403: warning: argument 'array' of command @param is not found in the argument list of CassieSearch::search(string suffixes[]) /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:403: warning: The following parameter of CassieSearch::search(string suffixes[]) is not documented: parameter 'suffixes' /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:49: warning: Member pos (variable) of class Match is not documented. /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h:326: warning: Member operator()(const Match *struct1, const Match *struct2) (function) of struct per_position is not documented. Doxygen version used: 1.9.8 Notice: Output directory 'doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/cassiopee-1.0.9/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/cassiopee.cxx... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/Cassiopee.h... Preprocessing /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx... Parsing file /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file src/Cassiopee.h... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Ambiguous... Generating docs for compound CassieIndexer... Generating docs for compound CassieSearch... Generating docs for compound CassiopeeUtils... Generating docs for compound Match... Generating docs for compound per_position... Generating docs for compound TreeNode... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 145/65536 hits=236 misses=150 symbol lookup cache used 125/65536 hits=429 misses=125 finished... make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 22%] Built target doc [ 33%] Linking CXX shared library ../lib/libcassie.so cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassie.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcassie.so.1 -o ../lib/libcassie.so.1.0.0 CMakeFiles/cassie.dir/cassiopee.cxx.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib: -lglog /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libcassie.so.1.0.0 ../lib/libcassie.so.1 ../lib/libcassie.so make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 33%] Built target cassie make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/depend make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/depend make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/depend make[3]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cassiopee-1.0.9 /build/reproducible-path/cassiopee-1.0.9/src /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src 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CMakeFiles/test_cassiopee.dir/test.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/test/test.cxx cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT src/CMakeFiles/cassiopee.dir/cassie.cxx.o -MF CMakeFiles/cassiopee.dir/cassie.cxx.o.d -o CMakeFiles/cassiopee.dir/cassie.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/cassie.cxx cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT src/CMakeFiles/cassiopeeknife.dir/knife.cxx.o -MF CMakeFiles/cassiopeeknife.dir/knife.cxx.o.d -o CMakeFiles/cassiopeeknife.dir/knife.cxx.o -c /build/reproducible-path/cassiopee-1.0.9/src/knife.cxx [ 77%] Linking CXX executable ../bin/cassiopeeknife cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopeeknife.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cassiopeeknife.dir/knife.cxx.o -o ../bin/cassiopeeknife -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 77%] Built target cassiopeeknife [ 88%] Linking CXX executable ../bin/cassiopee cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cassiopee.dir/cassie.cxx.o -o ../bin/cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [ 88%] Built target cassiopee [100%] Linking CXX executable ../bin/test_cassiopee cd /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cassiopee-1.0.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_cassiopee.dir/test.cxx.o -o ../bin/test_cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/lib ../lib/libcassie.so.1.0.0 -lglog -lcppunit /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' [100%] Built target test_cassiopee make[2]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestCassie 1: Test command: /build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu/bin/test_cassiopee 1: Working Directory: /build/reproducible-path/cassiopee-1.0.9 1: Test timeout computed to be: 10000000 1: WARNING: Logging before InitGoogleLogging() is written to STDERR 1: I20250610 19:41:32.027964 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.028036 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.029219 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.029237 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.029376 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.029387 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.029675 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.029685 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.029857 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.029873 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.030767 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.030781 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.031692 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.031708 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.031984 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.031996 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.032279 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.032294 1931983 cassiopee.cxx:651] Indexing test/protein.txt 1: I20250610 19:41:32.033886 1931983 cassiopee.cxx:632] Existing index for max depth = 0 1: I20250610 19:41:32.033910 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.035456 1931983 cassiopee.cxx:693] Maximum index depth: 75 1: I20250610 19:41:32.038475 1931983 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250610 19:41:32.038511 1931983 cassiopee.cxx:638] Index file exists, loading it 1: I20250610 19:41:32.041232 1931983 cassiopee.cxx:743] Loaded 2504 nodes 1: I20250610 19:41:32.041953 1931983 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250610 19:41:32.041982 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: I20250610 19:41:32.043196 1931983 cassiopee.cxx:693] Maximum index depth: 75 1: I20250610 19:41:32.050465 1931983 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250610 19:41:32.050508 1931983 cassiopee.cxx:638] Index file exists, loading it 1: I20250610 19:41:32.053062 1931983 cassiopee.cxx:743] Loaded 2504 nodes 1: I20250610 19:41:32.053462 1931983 cassiopee.cxx:632] Existing index for max depth = 75 1: I20250610 19:41:32.053483 1931983 cassiopee.cxx:651] Indexing test/sequence.txt 1: OK (13) 1/1 Test #1: TestCassie ....................... Passed 0.03 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.04 sec make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/cassiopee-1.0.9/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cassiopee-1.0.9 -B/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopee -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopee" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopeeknife -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/bin/cassiopeeknife" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/CassiopeeConfig.h -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1.0.0 -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so.1.0.0" to "" -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/lib/libcassie.so -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/Cassiopee.h -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/tree/tree.hh -- Installing: /build/reproducible-path/cassiopee-1.0.9/debian/tmp/usr/include/tree/tree_util.hh make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cassiopee-1.0.9' rm -f doc/html/jquery.js dh_install make[1]: Leaving directory '/build/reproducible-path/cassiopee-1.0.9' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcassie-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'cassiopee' in '../cassiopee_1.0.9-4_amd64.deb'. dpkg-deb: building package 'libcassie1v5' in '../libcassie1v5_1.0.9-4_amd64.deb'. dpkg-deb: building package 'libcassie-doc' in '../libcassie-doc_1.0.9-4_all.deb'. dpkg-deb: building package 'cassiopee-dbgsym' in '../cassiopee-dbgsym_1.0.9-4_amd64.deb'. dpkg-deb: building package 'libcassie-dev' in '../libcassie-dev_1.0.9-4_amd64.deb'. dpkg-deb: building package 'libcassie1v5-dbgsym' in '../libcassie1v5-dbgsym_1.0.9-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cassiopee_1.0.9-4_amd64.buildinfo dpkg-genchanges --build=binary -O../cassiopee_1.0.9-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1923538/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1923538 and its subdirectories I: Current time: Wed Jun 11 09:41:42 +14 2025 I: pbuilder-time-stamp: 1749584502