I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 11 02:13:22 +14 2026 I: pbuilder-time-stamp: 1796904802 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-5.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch dpkg-source: info: applying no-rpath dpkg-source: info: applying python3.12 dpkg-source: info: applying python3.13 dpkg-source: info: applying cython3.patch dpkg-source: info: applying cflags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/852355/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 10 12:13 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/852355/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/852355/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=830cb614cf514a51b6687f95cf8bd4e7 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=852355 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2eYS5g1B/pbuilderrc_02wv --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2eYS5g1B/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-5.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/852355/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev:native, libpython3-dev, python3-setuptools, cython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev:native. pbuilder-satisfydepends-dummy depends on libpython3-dev; however: Package libpython3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjs-sphinxdoc{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 47.6 MB of archives. After unpacking 193 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 42 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.17.0~rc3-1 [370 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 62 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.1.6+dfsg-2 [2115 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 69 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.9-1 [2055 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.9-1 [5057 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.9-1 [504 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 47.6 MB in 0s (282 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 10 12:13:40 UTC 2026. Universal Time is now: Thu Dec 10 12:13:40 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.3-1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.2.3-8) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.9-1) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpython3.13-dev:arm64 (3.13.9-1) ... Setting up cython3 (3.1.6+dfsg-2) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:arm64 (8.17.0~rc3-1) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/852355/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/852355/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-5_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean Compiling python/obitools3/utils.pyx because it changed. 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******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config Compiling python/obitools3/utils.pyx because it changed. 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******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! 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"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o 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CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c" [ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c" [ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g 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-MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c" [ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c" [ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c" [ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c" [ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c" [ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration 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CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c" [ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoError.c" [ 96%] Building C object CMakeFiles/cobitools3.dir/obitypes.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. 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CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups running build_ext building 'obitools3.utils' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3 aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/utils.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/utils.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.writers.tab' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/tab.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.writers.fastq' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.writers.fasta' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.uri.decode' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/uri aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/uri/decode.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/uri/decode.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.universal' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/universal.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.tab' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.ngsfilter' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.header' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/header.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.genbank' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/genbank.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.fastq' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.fasta' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.embl_genbank_features' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.parsers.embl' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/embl.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign.shifted_ali' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign.apat_pattern' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._solexapairend' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._rassemble' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_rassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._qsrassemble' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._qsassemble' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._nws' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_nws.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._freeendgapfm' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._freeendgap' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._dynamic' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_dynamic.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.libalign._assemble' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_assemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.format.tab' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/format aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/tab.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.format.header' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/header.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.format.fastq' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/fastq.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.format.fasta' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/format/fasta.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.files.universalopener' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/files aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/files/universalopener.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.files.uncompress' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/files/uncompress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.files.linebuffer' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/files/linebuffer.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.object' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/object.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/object.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.obiseq' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/obiseq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.dms' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/dms.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-aarch64-linux-gnu.so building 'obitools3.dms.view.view' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/view aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/view/view.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/view/typed_view aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/taxo aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.column_idx' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/column_idx.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.column' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/column.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.int' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.str' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.seq' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.qual' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.float' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.char' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.dms.column.typed_column.bool' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.uniq' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/uniq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.test' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/test.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/test.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.taxonomy' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/taxonomy.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.tail' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/tail.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/tail.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.stats' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/stats.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/stats.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.split' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/split.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/split.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.sort' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/sort.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/sort.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.rm' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/rm.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/rm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.ngsfilter' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.ls' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ls.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ls.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.less' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/less.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/less.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.import' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/import.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/import.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.history' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/history.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/history.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.head' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/head.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/head.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.grep' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/grep.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/grep.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.export' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/export.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/export.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.ecotag' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ecotag.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.ecopcr' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ecopcr.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.count' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/count.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/count.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.clean_dms' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/clean_dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.clean' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/clean.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.cat' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/cat.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/cat.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.build_ref_db' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/build_ref_db.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.annotate' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/annotate.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.alignpairedend' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/alignpairedend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.align' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/align.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/align.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.commands.addtaxids' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/addtaxids.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.apps.command' extension creating build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/command.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/command.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.apps.temp' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/temp.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/temp.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.apps.progress' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/progress.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/progress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.apps.logging' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/logging.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/logging.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.apps.config' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/config.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/config.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. building 'obitools3.apps.arguments' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/arguments.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/obitools-3.0.1~b26+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/aarch64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. running build_scripts creating build/scripts-3.13 copying and adjusting scripts/obi -> build/scripts-3.13 changing mode of build/scripts-3.13/obi from 644 to 755 dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' PYTHONPATH=/build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Other/Proprietary License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/version.py to version.cpython-313.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.13/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/obitools/usr/bin/obi dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/aarch64-linux-gnu/libcobitools3.so: DWARF compression not beneficial - old size 373513 new size 375022 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so' dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/aarch64-linux-gnu/libcobitools3.so found in none of the libraries dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/aarch64-linux-gnu/libcobitools3.so found in none of the libraries dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-5_arm64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/852355/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/852355/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/852355 and its subdirectories I: Current time: Fri Dec 11 02:22:58 +14 2026 I: pbuilder-time-stamp: 1796905378