I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 6 08:43:40 +14 2027 I: pbuilder-time-stamp: 1799174620 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parsinsert_1.04-16.dsc] I: copying [./parsinsert_1.04.orig.tar.gz] I: copying [./parsinsert_1.04-16.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./parsinsert_1.04-16.dsc: no acceptable signature found dpkg-source: info: extracting parsinsert in parsinsert-1.04 dpkg-source: info: unpacking parsinsert_1.04.orig.tar.gz dpkg-source: info: unpacking parsinsert_1.04-16.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 010_fix-gcc6.patch dpkg-source: info: applying 020_hardening.patch dpkg-source: info: applying gcc-12.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 5 18:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=2042b0e4351349009942cbcf5b479f59 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3777785 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LYV6Boov/pbuilderrc_EhYw --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LYV6Boov/b2 --logfile b2/build.log parsinsert_1.04-16.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19870 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 42.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-3 [878 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.2-1 [772 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Fetched 11.2 MB in 1s (19.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19870 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.2-1_amd64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-3_all.deb ... Unpacking automake (1:1.18.1-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.2-1_all.deb ... Unpacking autopoint (0.23.2-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.194-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.15.1+dfsg-2+b1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.2-1_amd64.deb ... Unpacking gettext (0.23.2-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:amd64 (1.5.8-2) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.2-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/parsinsert-1.04/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../parsinsert_1.04-16_source.changes dpkg-buildpackage: info: source package parsinsert dpkg-buildpackage: info: source version 1.04-16 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/parsinsert-1.04' mv parsinsert ParsInsert || true mv: cannot stat 'parsinsert': No such file or directory dh_auto_clean make -j42 clean make[2]: Entering directory '/build/reproducible-path/parsinsert-1.04' rm -f ParsInsert AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o *.fasta *.log *.results *.tree make[2]: Leaving directory '/build/reproducible-path/parsinsert-1.04' make[1]: Leaving directory '/build/reproducible-path/parsinsert-1.04' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/parsinsert-1.04' blhc: ignore-line-regexp: ^g\+\+ .* -fPIE.*$ dh_auto_build make -j42 INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/parsinsert-1.04' g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -c -o AttrList.o AttrList.cpp g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -c -o Knox_Stddef.o Knox_Stddef.cpp g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -c -o PNode.o PNode.cpp g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -c -o SeqList.o SeqList.cpp g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -c -o Taxonomy.o Taxonomy.cpp g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -c -o ParsInsert.o ParsInsert.cpp ParsInsert.cpp:412:45: warning: macro '__DATE__' might prevent reproducible builds [-Wdate-time] 412 | DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); | ^~~~~~~ ParsInsert.cpp:57:82: warning: macro '__TIME__' might prevent reproducible builds [-Wdate-time] 57 | #define VERSION APPNAME " Version 1.04 " __DATE__ " " __TIME__ | ^~~~~~~~ ParsInsert.cpp:412:45: note: in expansion of macro 'VERSION' 412 | DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); | ^~~~~~~ ParsInsert.cpp:417:25: warning: macro '__DATE__' might prevent reproducible builds [-Wdate-time] 417 | DisplayT(USAGE, VERSION, APPNAME); | ^~~~~~~ ParsInsert.cpp:57:82: warning: macro '__TIME__' might prevent reproducible builds [-Wdate-time] 57 | #define VERSION APPNAME " Version 1.04 " __DATE__ " " __TIME__ | ^~~~~~~~ ParsInsert.cpp:417:25: note: in expansion of macro 'VERSION' 417 | DisplayT(USAGE, VERSION, APPNAME); | ^~~~~~~ Taxonomy.cpp: In member function 'int CTaxEntry::Display(const char*, int)': Taxonomy.cpp:96:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | DisplayL("%s[%s] %d\n", leader, name.c_str(), count); | ^~~~~~~~~~~~~ In file included from PNode.h:31, from PNode.cpp:27: ParsimonySet.h: In member function 'void CParsimonySet::TraceSegments(const char*)': ParsimonySet.h:429:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 429 | DisplayL("%s [", label); | ^~~~~~ ParsimonySet.h:431:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 431 | DisplayL(" %3d", segCounts[k]); | ^~~~~~ ParsimonySet.h:432:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 432 | DisplayL("]\n"); | ^~~~~ In file included from PNode.h:31, from SeqList.cpp:27: ParsimonySet.h: In member function 'void CParsimonySet::TraceSegments(const char*)': ParsimonySet.h:429:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 429 | DisplayL("%s [", label); | ^~~~~~ ParsimonySet.h:431:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 431 | DisplayL(" %3d", segCounts[k]); | ^~~~~~ ParsimonySet.h:432:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 432 | DisplayL("]\n"); | ^~~~~ In file included from ParsInsert.h:29, from ParsInsert.cpp:34: ParsimonySet.h: In member function 'void CParsimonySet::TraceSegments(const char*)': ParsimonySet.h:429:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 429 | DisplayL("%s [", label); | ^~~~~~ ParsimonySet.h:431:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 431 | DisplayL(" %3d", segCounts[k]); | ^~~~~~ ParsimonySet.h:432:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 432 | DisplayL("]\n"); | ^~~~~ SeqList.cpp: In member function 'int CSequenceFile::ReadSequenceIndexFile(const char*)': SeqList.cpp:490:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 490 | DisplayT("Loading sequence %d [%s]\n", count, name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:492:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 492 | DisplayT("Loading sequence %d\n", count); | ^~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:496:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 496 | DisplayT("Loaded %d sequences from [%s]\n", count, filename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function 'int CSequenceFile::ReadTaxonomyFile()': SeqList.cpp:529:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 529 | DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:531:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 531 | DisplayT("Loading sequence %d\n", seqCount); | ^~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function 'int CSequenceFile::ReadSequenceFile(int)': SeqList.cpp:565:50: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 565 | DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:580:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 580 | DisplayL("Duplicate sequence found [%s]\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:605:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 605 | DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ PNode.cpp: In member function 'void CPTree::Parse(const char*)': PNode.cpp:299:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 299 | DisplayL("Could not process all the chars in NEWICK file\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PNode.cpp:304:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 304 | DisplayL("Processed %d chars of %d\n", nProcess, totalProcess); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: At global scope: ParsInsert.cpp:93:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 93 | char *statsName = "PI_Results.log"; | ^~~~~~~~~~~~~~~~ ParsInsert.cpp:94:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 94 | char *logFilename = "ParsInsert.log"; | ^~~~~~~~~~~~~~~~ ParsInsert.cpp:95:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 95 | char *treeFilename = "PI_Tree.tree"; | ^~~~~~~~~~~~~~ ParsInsert.cpp:96:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 96 | char *seqFilename = "PI_Tree.fasta"; | ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int main(int, char**)': ParsInsert.cpp:248:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 248 | DisplayL("%s\n", COPYRIGHT); | ^~~~~~ ParsInsert.cpp:289:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 289 | DisplayL("Setting Tree Floating Point Precision to %d\n", v); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:389:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 389 | DisplayL("invalid command option '%c'\n", argv[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:412:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 412 | DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:416:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 416 | DisplayL("ERROR - missing files to process\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:64:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 64 | #define USAGE "Application:%s\n\n%s [options] \n" \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | " Parsimonious Insertion of Sequences into Given Tree \n\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | " -m - read mask from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | " -s - read core tree sequences from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | " (default: PI_Tree.fasta) \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | " -t - read core tree from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | " (default: PI_Tree.tree) \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | " -x - read core tree taxomony from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | " -o - output taxonomy for each insert sequence to this file\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | " (default: PI_Results.log) \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | " -l[-|] - create log file (default is ParsInsert.log)\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 | " -n# - number of best matches to display \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 | " -c# - percent threshold cutoff \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 | " -p - print node comments in newick file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 | " -D# - print branch lengths using # decimal places\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | "\n" | ~~~~ ParsInsert.cpp:417:18: note: in expansion of macro 'USAGE' 417 | DisplayT(USAGE, VERSION, APPNAME); | ^~~~~ ParsInsert.cpp:425:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 425 | DisplayL(" tree file: %s\n", treeFilename); | ^~~~~~~~~~~~~~~~~~ ParsInsert.cpp:430:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 430 | DisplayL(" tree sequence file: %s\n", seqFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:435:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 435 | DisplayL(" mask file: %s\n", maskName); | ^~~~~~~~~~~~~~~~~~ ParsInsert.cpp:439:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 439 | DisplayT("Cannot open mask file [%s]", maskName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:448:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 448 | DisplayL(" taxomony index file: %s\n", taxName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:452:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 452 | DisplayT("Cannot open taxomony index FASTA file [%s]", taxName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:456:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 456 | DisplayL(" taxomony index file: %d taxa\n", taxonomy->GetCount()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:485:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 485 | DisplayL("Process Completed: %d sec\n", time(NULL)-start); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int ParsimonyInsertion()': ParsInsert.cpp:533:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | DisplayL("Reading Newick Tree: [%s]\n", treeFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:538:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 538 | DisplayL("Error accessing Newick Tree file [%s]\n", treeFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:542:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 542 | DisplayL("Newick Tree Read Completed: %d taxa, %d sec\n", (tree->nodeList.size()+1)/2, time(NULL)-stage); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:553:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 553 | DisplayL("Found duplicate name: [%s]/n", name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:559:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 559 | DisplayL("Tree Sequence Reading: [%s]\n", seqFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:565:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 565 | DisplayL("Tree Sequence Read Completed: %d sequences, %d sec\n", treeSeqfile->seqlist.size(), time(NULL)-stage); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:568:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 568 | DisplayL("Reading sequences for insertion: [%s]\n", files[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:574:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 574 | DisplayL("No insertion sequences found\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:577:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 577 | DisplayL("Insert Sequecne Read Completed: %d sequences, %d sec\n", insertSeqfile->GetCount(), time(NULL)-stage); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:580:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 580 | DisplayL("Checking Taxa Taxonomy\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:582:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 582 | DisplayL("Setting Internal Taxonomy\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:585:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 585 | DisplayL("Internal Taxonomy Completed: %d sec\n", time(NULL)-stage); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:588:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 588 | DisplayL("Setting internal parsimony sequences ...\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:591:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 591 | DisplayL("Parsimony Calculation Completed: %d sec\n", time(NULL)-stage); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:596:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 596 | DisplayL("[%d sec elapsed] Searching for insertion points:\n", time(NULL)-start); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:624:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 624 | DisplayL("[%d sec elapsed] Insert Locations Completed: %d sec\n", time(NULL)-start, time(NULL)-stage); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:642:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 642 | DisplayL("Writing Newick tree file: [%s]\n", treename.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:648:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 648 | DisplayL("CalcCost calls[%d] = %d / %d (%d)\n", useCalcCost, nCalcCostFull, nCalcCost,nCalcCost-nCalcCostFull); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:650:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 650 | DisplayL("Insert Time = %d, %d per hour\n", insertTime, 3600 * inserts.size() / insertTime ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int CheckTreeSequences(CPTree*, CSequenceFile*)': ParsInsert.cpp:675:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 675 | DisplayL("Error accessing Tree Sequencefile [%s]\n", treeSeqfile->fname.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:694:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 694 | DisplayL("ERROR - tree member sequence is not available [%s]\n", name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int CreateParsimonySets(const char*, CPTree*)': ParsInsert.cpp:712:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 712 | DisplayL(" parsimony index file: %s\n", parsName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:716:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 716 | DisplayT("Cannot open parsimony index FASTA file [%s]", parsName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:719:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 719 | DisplayL(" parsimony file: %d internal nodes\n", parsimony->GetCount()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:756:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 756 | DisplayL("Calculating internal parsimony sequences ...\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'CPTree* ReadNewickTree(const char*)': ParsInsert.cpp:862:25: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 862 | Display("Could not open source file: [%s]\n", filename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:871:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 871 | DisplayT("Opening file: %s\t...", filename); | ^~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:898:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 898 | Display("Opening file: %s\tLines:%d", filename, linecount); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:903:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 903 | DisplayT("Parsing Newick file: %s\t...", filename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int CheckLeafTaxonomy(CPTree*)': ParsInsert.cpp:950:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 950 | DisplayL("%d of %d nodes are missing taxonomy\n\t", n, nodes.size()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:956:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 956 | DisplayL(" %-12.12s%s", node->title.c_str(), (++count%8 == 0 ? "\n\t" :"")); | ^~~~~~~~~~~~~ ParsInsert.cpp:958:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 958 | DisplayL("\n"); | ^~~~ ParsInsert.cpp: In function 'int SetInternalTaxonomy(CPTree*)': ParsInsert.cpp:1092:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1092 | DisplayT("\rSetting Internal Taxonomy %d nodes remaining ", nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1100:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1100 | DisplayT("\n"); | ^~~~ ParsInsert.cpp: In function 'void FindInsertLocations_Serial(CSequenceFile*, CPTree*, CSequenceFile*, CInsertPosArray&)': ParsInsert.cpp:1126:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1126 | DisplayL("**** Sequence is already in core tree: %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1133:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1133 | DisplayL("**** Cannot find sequence for %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1167:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1167 | DisplayL("Insert [%20s](len=%d) [%5d sites] (%d - %d) [%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1188:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1188 | DisplayL("Searching for position to insert %d sequences in tree of %d nodes. {Setup: %d sec}\n", inserts.size(), tree->nodeList.size(), time(NULL)-start+1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1194:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1194 | DisplayL("[%10d/%d] {%d sec} [%s]\n", count, tree->nodeList.size(), time(NULL)-start+1, node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1225:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1225 | DisplayL("Insertion of %d sequences in [%d sec]\n", inserts.size(), finish-start+1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void FindInsertLocations(CSequenceFile*, CPNode*, CSequenceItem*, CInsertPos*)': ParsInsert.cpp:1245:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1245 | DisplayL("**** Error: could not generate Parsimony Set\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void FindInsertLocations(CSequenceFile*, CPTree*, CSequenceFile*, CInsertPosArray&)': ParsInsert.cpp:1325:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1325 | DisplayL("**** Sequence is already in core tree: %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1332:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1332 | DisplayL("**** Cannot find sequence for %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1344:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1344 | DisplayL("**** Cannot find sequence taxonomy for %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1369:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1369 | DisplayL("[%10d/%d] {%d sec} [%s]\n", count, insertSeqfile->seqCount, time(NULL)-start+1, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1375:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1375 | DisplayL("Insert [%20s](len=%d) [%5d sites] (%d - %d) [%s]", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1385:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1385 | DisplayL("(%d sec) [%5d skipped]\n", time(NULL)-start_item, nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1387:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1387 | DisplayL("(%d sec)\n", time(NULL)-start_item); | ^~~~~~~~~~~~ ParsInsert.cpp:1395:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1395 | DisplayL("Insertion of %d sequences in [%d sec]\n", inserts.size(), finish-start+1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void BuildScoreMatrix()': ParsInsert.cpp:1433:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1433 | DisplayL("BAD BAD COMPUTER"); | ^~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int CalcCost_NEW1(CParsimonySet&, CParsimonySet&, int&, int&, int&, int)': ParsInsert.cpp:1444:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1444 | register LPCSTR m = mask; | ^ ParsInsert.cpp:1445:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1445 | register BYTE *p1 = next_pars.data; | ^~ ParsInsert.cpp:1446:34: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1446 | register BYTE *p2 = node_pars.data; | ^~ ParsInsert.cpp:1447:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1447 | register DWORD key; | ^~~ ParsInsert.cpp:1470:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1470 | register WORD value = scoreMatrix[key]; | ^~~~~ ParsInsert.cpp: In function 'int CalcCost_ORIG(CParsimonySet&, CParsimonySet&, int&, int&, int&, int)': ParsInsert.cpp:1551:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1551 | register LPCSTR m = mask; | ^ ParsInsert.cpp:1559:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1559 | register BYTE *p1 = next_pars.data; | ^~ ParsInsert.cpp:1560:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1560 | register BYTE *p2 = node_pars.data; | ^~ ParsInsert.cpp:1566:49: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1566 | register char s1 = *p1; | ^~ ParsInsert.cpp:1567:49: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1567 | register char s2 = *p2; | ^~ ParsInsert.cpp: In function 'int CalcAncestorParsimony(CPTree*)': ParsInsert.cpp:1641:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1641 | DisplayT("Calculating Parsimony ..."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1645:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1645 | DisplayT("*** Cannot calc parsimony, no sequence file loaded"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1659:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1659 | DisplayL("Applying parsimonious selections back down the tree.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1661:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1661 | DisplayL("%d nodes were modified\n", changes); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1685:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1685 | DisplayT("\nProcessed %d nodes in %d seconds, %.0f nodes per sec\n", tree->nodeList.size(), delta, npersec); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int ForceNodeParsimony(CPNode*)': ParsInsert.cpp:1710:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1710 | DisplayL("***** Child not found [%s]\n", node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int CalcNodeParsimony(CPNode*)': ParsInsert.cpp:1749:42: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1749 | DisplayL("***** Child not found [%s]\n", node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1802:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1802 | DisplayT("\rCalcParsimony %d nodes remaining ", nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int WriteParsimonySet(CPNode*, CSequenceFile*)': ParsInsert.cpp:1830:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1830 | DisplayT("\r %d nodes remaining to be written ", nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void DisplayInsertLocations(CInsertPosArray&, int)': ParsInsert.cpp:1881:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1881 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1883:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1883 | DisplayL("\nInsertion of [%s][%5d sites] [%d matches] Taxonomy[%s]:\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1893:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1893 | DisplayL("\tNO MATCHES found\n"); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1940:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1940 | DisplayL("%c(%3d%%) %6d (%4d diffs, %4d partials, %4d indels) [%12s][%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1976:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1976 | DisplayL("\nInsertion [%5d sites] [%20.20s] %6d (%4d diffs, %4d partials, %4d indels)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1990:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1990 | DisplayL("%12.12s\t Seq[%s]\n", marker.c_str(), tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1991:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1991 | DisplayL("%12.12s\t [%s]\n", "", diff.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1992:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1992 | DisplayL("%12.12s\t Best[%s]\n", "", taxBest.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1994:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1994 | DisplayL("\tFirst[%s]\n", taxFirst.c_str()); | ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void DisplayBestInsertLocations(CInsertPos*, int)': ParsInsert.cpp:2011:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2011 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2013:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2013 | DisplayL("\nInsertion of [%s][%5d sites] [%d matches] Taxonomy[%s]:\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2022:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2022 | DisplayL("\tNO MATCHES found\n"); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2070:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2070 | DisplayL("%c(%3d%%) %6d (%4d diffs, %4d partials, %4d indels) [%12s][%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2105:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2105 | DisplayL("\nInsertion [%5d sites] [%20.20s] %6d (%4d diffs, %4d partials, %4d indels)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2119:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2119 | DisplayL("%12.12s\t Seq[%s]\n", marker.c_str(), tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2120:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2120 | DisplayL("%12.12s\t [%s]\n", "", diff.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2121:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2121 | DisplayL("%12.12s\t Best[%s]\n", "", taxBest.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2123:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2123 | DisplayL("\tFirst[%s]\n", taxFirst.c_str()); | ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void DisplayRankCounts(const char*, int (*)[4])': ParsInsert.cpp:2135:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2135 | DisplayL("\n%s\n _________Precision________ __________Recall__________\n", header); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2142:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2142 | DisplayL("\t%10.10s: %8d %8d (%6.2f%%) %8d %8d (%6.2f%%)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void OutputInsertLocations(CInsertPosArray&, int)': ParsInsert.cpp:2183:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2183 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2184:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2184 | DisplayL("\nInsertion: [%20.20s] [%5d sites]\n", name.c_str(), inserts[i]->nSites); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2188:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2188 | DisplayL("\tNO MATCHES found\n"); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2232:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2232 | DisplayL("\t\t%5d [%5f] [%s][%s]\n", iterB->score, dist, iterB->node->title.c_str(), iterB->tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2262:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2262 | DisplayL("\t\t%5d [%3d%%] [%s][%s]\n", iterB->score, per, iterB->node->title.c_str(), iterB->tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2266:30: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2266 | DisplayL("%1d (%3d%%) %6d (%4d diffs, %4d partials, %4d indels) [%12s]%c[%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2307:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2307 | DisplayL("\t %6d (%4d diffs, %4d partials, %4d indels) [%s] \n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2325:58: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2325 | DisplayL("%18s[%s]\n", leader.c_str(), taxVoteList[knox].c_str()); | ^~~~~~~~~~~~ ParsInsert.cpp:2332:50: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2332 | DisplayL("%18s[%s]\n", leader.c_str(), taxBest.c_str()); | ^~~~~~~~~~~~ ParsInsert.cpp:2354:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2354 | DisplayL("no assignment (%d%% < %d%%)", per, scoreThresh); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2364:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2364 | DisplayL(" Correct Taxonomy:[%s]\n", taxCorrect.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2408:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2408 | DisplayL("Taxonomies List:\n"); | ^~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int BuildInsertTree(CTreeInserts*, CPTree*)': ParsInsert.cpp:2648:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2648 | DisplayL("[%s] at %d%% does not meet threshold (%d%%)\n", in->seq->name.c_str(), score, 100-scoreThresh); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int SetMyTaxonomy(CPNode*)': ParsInsert.cpp:2805:26: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2805 | DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), child->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2811:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2811 | DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), child->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2835:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 2835 | DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'double ComparePosition(const char*, CPNode*, CPTree*, CPTree*)': ParsInsert.cpp:3012:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3012 | DisplayL("Could not find core position for [%s][%s]\n", core1.c_str(), core2.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'void ComparePositions(CInsertPosArray&, CPTree*, CPTree*)': ParsInsert.cpp:3037:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3037 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3038:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3038 | DisplayL("\nDistance to Insertion: [%20.20s] [%5d sites]\n", name.c_str(), inserts[i]->best.list.size()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3042:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3042 | DisplayL("\tNO MATCHES found for [%s]\n", name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3055:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3055 | DisplayL("\tDistance error from [%20.20s] = %d\n", pname.c_str(), dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function 'int FullTree_Initialization()': ParsInsert.cpp:3070:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3070 | DisplayL("Reading Newick Tree: [%s]\n", fullTreeName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3074:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3074 | DisplayL("Error accessing Newick Tree file [%s]\n", fullTreeName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3078:14: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 3078 | DisplayL("Newick Tree Read Completed: %d taxa\n", (fullTree->nodeList.size()+1)/2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -g -O2 -ffile-prefix-map=/build/reproducible-path/parsinsert-1.04=. -specs=/usr/share/dpkg/no-pie-compile.specs -fPIE -o ParsInsert AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o -lm -lc -specs=/usr/share/dpkg/no-pie-link.specs make[2]: Leaving directory '/build/reproducible-path/parsinsert-1.04' mv ParsInsert parsinsert make[1]: Leaving directory '/build/reproducible-path/parsinsert-1.04' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/parsinsert-1.04' dh_install -Xset1000.log make[1]: Leaving directory '/build/reproducible-path/parsinsert-1.04' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'parsinsert-testdata' in '../parsinsert-testdata_1.04-16_all.deb'. dpkg-deb: building package 'parsinsert-dbgsym' in '../parsinsert-dbgsym_1.04-16_amd64.deb'. dpkg-deb: building package 'parsinsert' in '../parsinsert_1.04-16_amd64.deb'. dpkg-genbuildinfo --build=binary -O../parsinsert_1.04-16_amd64.buildinfo dpkg-genchanges --build=binary -O../parsinsert_1.04-16_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3777785/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3777785 and its subdirectories I: Current time: Wed Jan 6 08:49:31 +14 2027 I: pbuilder-time-stamp: 1799174971