I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 28 05:52:23 +14 2025 I: pbuilder-time-stamp: 1764258743 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bioperl_1.7.8-2.dsc] I: copying [./bioperl_1.7.8.orig.tar.gz] I: copying [./bioperl_1.7.8-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./bioperl_1.7.8-2.dsc: no acceptable signature found dpkg-source: info: extracting bioperl in bioperl-1.7.8 dpkg-source: info: unpacking bioperl_1.7.8.orig.tar.gz dpkg-source: info: unpacking bioperl_1.7.8-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-fix-error-popping-up-with-latest-perl-releases-a80e8a655a953301f71538f9088a613eb63d5a73.patch dpkg-source: info: applying 0001-fix-error-popping-up-with-latest-perl-releases-01ba1a675c80e7f8b77e05be9055d1208f246083.patch dpkg-source: info: applying perl-5.42-precedence.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 27 15:52 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f73bf1c2fc4f423e92c289bbddb2f41f LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2166382 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XEiQ60g0/pbuilderrc_br0M --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XEiQ60g0/b2 --logfile b2/build.log bioperl_1.7.8-2.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.57+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libmodule-build-perl, perl, rename, libio-string-perl, libdata-stag-perl, libtest-most-perl, libace-perl, libalgorithm-munkres-perl, libarray-compare-perl, libbio-asn1-entrezgene-perl, libbio-samtools-perl, libclass-unload-perl, libcgi-pm-perl, libclone-perl, libconvert-binary-c-perl, libdbd-sqlite3-perl, libdbd-mysql-perl, libdbd-pg-perl, libgd-perl, libgraph-perl, libgraphviz-perl, libhtml-parser-perl, libhtml-tableextract-perl, liblist-moreutils-perl, libpath-class-perl, libperlio-eol-perl, libpostscript-perl, libset-scalar-perl, libsoap-lite-perl, libsort-naturally-perl, libspreadsheet-parseexcel-perl, libspreadsheet-writeexcel-perl, libstorable-perl, libsvg-perl, libsvg-graph-perl, libtest-memory-cycle-perl, libtest-pod-perl, libtest-weaken-perl, liburi-perl, libxml-dom-xpath-perl, libxml-parser-perl, libxml-sax-perl, libxml-sax-writer-perl, libxml-twig-perl, libxml-simple-perl, libxml-writer-perl, libxml-libxml-perl, libwww-perl, libyaml-perl, libtest-requiresinternet-perl, libxml-sax-expatxs-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. pbuilder-satisfydepends-dummy depends on libio-string-perl; however: Package libio-string-perl is not installed. pbuilder-satisfydepends-dummy depends on libdata-stag-perl; however: Package libdata-stag-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libace-perl; however: Package libace-perl is not installed. pbuilder-satisfydepends-dummy depends on libalgorithm-munkres-perl; however: Package libalgorithm-munkres-perl is not installed. pbuilder-satisfydepends-dummy depends on libarray-compare-perl; however: Package libarray-compare-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-asn1-entrezgene-perl; however: Package libbio-asn1-entrezgene-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-samtools-perl; however: Package libbio-samtools-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-unload-perl; however: Package libclass-unload-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however: Package libcgi-pm-perl is not installed. pbuilder-satisfydepends-dummy depends on libclone-perl; however: Package libclone-perl is not installed. pbuilder-satisfydepends-dummy depends on libconvert-binary-c-perl; however: Package libconvert-binary-c-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-sqlite3-perl; however: Package libdbd-sqlite3-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-mysql-perl; however: Package libdbd-mysql-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbd-pg-perl; however: Package libdbd-pg-perl is not installed. pbuilder-satisfydepends-dummy depends on libgd-perl; however: Package libgd-perl is not installed. pbuilder-satisfydepends-dummy depends on libgraph-perl; however: Package libgraph-perl is not installed. pbuilder-satisfydepends-dummy depends on libgraphviz-perl; however: Package libgraphviz-perl is not installed. pbuilder-satisfydepends-dummy depends on libhtml-parser-perl; however: Package libhtml-parser-perl is not installed. pbuilder-satisfydepends-dummy depends on libhtml-tableextract-perl; however: Package libhtml-tableextract-perl is not installed. pbuilder-satisfydepends-dummy depends on liblist-moreutils-perl; however: Package liblist-moreutils-perl is not installed. pbuilder-satisfydepends-dummy depends on libpath-class-perl; however: Package libpath-class-perl is not installed. pbuilder-satisfydepends-dummy depends on libperlio-eol-perl; however: Package libperlio-eol-perl is not installed. pbuilder-satisfydepends-dummy depends on libpostscript-perl; however: Package libpostscript-perl is not installed. pbuilder-satisfydepends-dummy depends on libset-scalar-perl; however: Package libset-scalar-perl is not installed. pbuilder-satisfydepends-dummy depends on libsoap-lite-perl; however: Package libsoap-lite-perl is not installed. pbuilder-satisfydepends-dummy depends on libsort-naturally-perl; however: Package libsort-naturally-perl is not installed. pbuilder-satisfydepends-dummy depends on libspreadsheet-parseexcel-perl; however: Package libspreadsheet-parseexcel-perl is not installed. pbuilder-satisfydepends-dummy depends on libspreadsheet-writeexcel-perl; however: Package libspreadsheet-writeexcel-perl is not installed. pbuilder-satisfydepends-dummy depends on libsvg-perl; however: Package libsvg-perl is not installed. pbuilder-satisfydepends-dummy depends on libsvg-graph-perl; however: Package libsvg-graph-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-memory-cycle-perl; however: Package libtest-memory-cycle-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-perl; however: Package libtest-pod-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-weaken-perl; however: Package libtest-weaken-perl is not installed. pbuilder-satisfydepends-dummy depends on liburi-perl; however: Package liburi-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-dom-xpath-perl; however: Package libxml-dom-xpath-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-parser-perl; however: Package libxml-parser-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however: Package libxml-sax-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-writer-perl; however: Package libxml-sax-writer-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-twig-perl; however: Package libxml-twig-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-simple-perl; however: Package libxml-simple-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-writer-perl; however: Package libxml-writer-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-libxml-perl; however: Package libxml-libxml-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libyaml-perl; however: Package libyaml-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-requiresinternet-perl; however: Package libtest-requiresinternet-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-expatxs-perl; however: Package libxml-sax-expatxs-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libace-perl{a} libalgorithm-diff-perl{a} libalgorithm-munkres-perl{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libarray-compare-perl{a} libavif16{a} libb-hooks-op-check-perl{a} libbio-asn1-entrezgene-perl{a} libbio-cluster-perl{a} libbio-perl-perl{a} libbio-samtools-perl{a} libbio-variation-perl{a} libbrotli1{a} libcache-cache-perl{a} libcairo2{a} libcapture-tiny-perl{a} libcdt5{a} libcgi-pm-perl{a} libcgraph6{a} libclass-data-inheritable-perl{a} libclass-inspector-perl{a} libclass-method-modifiers-perl{a} libclass-unload-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libconvert-binary-c-perl{a} libconvert-binhex-perl{a} libcrypt-rc4-perl{a} libdata-stag-perl{a} libdatrie1{a} libdav1d7{a} libdbd-mysql-perl{a} libdbd-pg-perl{a} libdbd-sqlite3-perl{a} libdbi-perl{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-cycle-perl{a} libdevel-stacktrace-perl{a} libdigest-perl-md5-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} liberror-perl{a} libexception-class-perl{a} libexpat1{a} libexporter-tiny-perl{a} libfcgi-perl{a} libfcgi0t64{a} libffi8{a} libfile-listing-perl{a} libfile-slurper-perl{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd-perl{a} libgd3{a} libglib2.0-0t64{a} libgraph-perl{a} libgraphite2-3{a} libgraphviz-perl{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheap-perl{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhtml-parser-perl{a} libhtml-tableextract-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-daemon-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libimagequant0{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-sessiondata-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libio-stringy-perl{a} libipc-run-perl{a} libipc-sharelite-perl{a} libjbig0{a} libjcode-pm-perl{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} libldap2{a} liblerc4{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmailtools-perl{a} libmariadb3{a} libmath-derivative-perl{a} libmath-spline-perl{a} libmime-tools-perl{a} libmodule-build-perl{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-smtp-ssl-perl{a} libnet-ssleay-perl{a} libole-storage-lite-perl{a} libpadwalker-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparse-recdescent-perl{a} libpath-class-perl{a} libpathplan4{a} libperlio-eol-perl{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpostscript-perl{a} libpq5{a} libproc2-0{a} librav1e0.8{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libset-object-perl{a} libset-scalar-perl{a} libsharpyuv0{a} libsm6{a} libsoap-lite-perl{a} libsort-naturally-perl{a} libspreadsheet-parseexcel-perl{a} libspreadsheet-writeexcel-perl{a} libstatistics-descriptive-perl{a} libsub-quote-perl{a} libsub-uplevel-perl{a} libsvg-graph-perl{a} libsvg-perl{a} libsvtav1enc2{a} libtask-weaken-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-memory-cycle-perl{a} libtest-most-perl{a} libtest-pod-perl{a} libtest-requiresinternet-perl{a} libtest-warn-perl{a} libtest-weaken-perl{a} libtext-charwidth-perl{a} libtext-diff-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtool{a} libtree-dagnode-perl{a} libtry-tiny-perl{a} libtype-tiny-perl{a} libuchardet0{a} libunicode-map-perl{a} libunistring5{a} liburi-perl{a} libwebp7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml-dom-perl{a} libxml-dom-xpath-perl{a} libxml-filter-buffertext-perl{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-perl{a} libxml-regexp-perl{a} libxml-sax-base-perl{a} libxml-sax-expatxs-perl{a} libxml-sax-perl{a} libxml-sax-writer-perl{a} libxml-simple-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml-xpath-perl{a} libxml-xpathengine-perl{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyaml-perl{a} libyuv0{a} m4{a} man-db{a} mariadb-common{a} mysql-common{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} procps{a} rename{a} sensible-utils{a} ucf{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl fonts-liberation ghostscript krb5-locales libalgorithm-diff-xs-perl libarchive-cpio-perl libauthen-sasl-perl libbio-perl-run-perl libcgi-fast-perl libdata-dump-perl libdate-calc-perl libdate-manip-perl libfcgi-bin libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libhtml-form-perl libhtml-format-perl libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libmldbm-perl libmodule-signature-perl libnamespace-clean-perl libperlio-utf8-strict-perl libpod-readme-perl libref-util-perl libsasl2-modules libsoftware-license-perl libtext-iconv-perl libtie-hash-indexed-perl libtie-ixhash-perl libtype-tiny-xs-perl libxml-libxslt-perl libxml-sax-expat-perl libxmlrpc-lite-perl libxstring-perl libyaml-libyaml-perl libyaml-syck-perl linux-sysctl-defaults lynx perl-tk psmisc shared-mime-info wget xdg-user-dirs 0 packages upgraded, 254 newly installed, 0 to remove and 0 not upgraded. Need to get 49.7 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 18 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 19 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-3 [878 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.2-1 [772 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 31 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.1+dfsg-1 [641 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.51-1 [287 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libcdt5 amd64 2.42.4-3 [40.3 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libcgraph6 amd64 2.42.4-3 [64.0 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-6 [978 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.20.2-2+b1 [19.1 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.20.2-2+b1 [17.7 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.20.2-2+b1 [601 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-7 [416 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.14-1 [39.6 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libpathplan4 amd64 2.42.4-3 [42.6 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libgvc6 amd64 2.42.4-3 [686 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libgvpr2 amd64 2.42.4-3 [192 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 liblab-gamut1 amd64 2.42.4-3 [198 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 graphviz amd64 2.42.4-3 [621 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libipc-sharelite-perl amd64 0.17-5+b3 [23.1 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libcache-cache-perl all 1.08-3 [63.4 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libace-perl amd64 1.92-13 [278 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libalgorithm-munkres-perl all 0.08-5 [11.3 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libexporter-tiny-perl all 1.006002-1 [38.7 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libtype-tiny-perl all 2.008004-1 [384 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libarray-compare-perl all 3.0.8-1 [14.9 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.34-2 [111 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 145 http://deb.debian.org/debian forky/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 libwww-perl all 6.81-1 [186 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libxml-twig-perl all 1:3.54-1 [177 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libbio-asn1-entrezgene-perl all 1.730-3 [46.3 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libbio-samtools-perl amd64 1.43-5+b1 [182 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libcgi-pm-perl all 4.71-1 [217 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 165 http://deb.debian.org/debian forky/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libclass-unload-perl all 0.12-1 [5820 B] Get: 167 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libconvert-binary-c-perl amd64 0.86-1 [283 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libcrypt-rc4-perl all 2.02-5 [7480 B] Get: 171 http://deb.debian.org/debian forky/main amd64 libdbi-perl amd64 1.647-1 [861 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 mysql-common all 5.8+1.1.1 [6784 B] Get: 173 http://deb.debian.org/debian forky/main amd64 mariadb-common all 1:11.8.3-1 [28.8 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 libmariadb3 amd64 1:11.8.3-1+b1 [188 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 libdbd-mysql-perl amd64 4.053-1 [114 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 179 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get: 180 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 libpq5 amd64 18.1-1 [248 kB] Get: 185 http://deb.debian.org/debian forky/main amd64 libdbd-pg-perl amd64 3.18.0-2 [215 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 libdbd-sqlite3-perl amd64 1.76-1 [175 kB] Get: 187 http://deb.debian.org/debian forky/main amd64 libdevel-cycle-perl all 1.12-2 [11.9 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 libdigest-perl-md5-perl all 1.9-5 [11.7 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 libfcgi0t64 amd64 2.4.5-0.1 [25.4 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 libfcgi-perl amd64 0.82+ds-3+b2 [25.3 kB] Get: 193 http://deb.debian.org/debian forky/main amd64 libfile-slurper-perl all 0.014-1 [8560 B] Get: 194 http://deb.debian.org/debian forky/main amd64 libgd-perl amd64 2.83-1 [133 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 libheap-perl all 0.80-5 [34.3 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 libset-object-perl amd64 1.43-1 [37.8 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 libgraph-perl all 1:0.9735-1 [111 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 libio-pty-perl amd64 1:1.20-1+b3 [34.3 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 libipc-run-perl all 20250809.0-1 [104 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 libxml-xpath-perl all 1.48-1 [71.0 kB] Get: 202 http://deb.debian.org/debian forky/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 libhtml-tableextract-perl all 2.15-2 [30.6 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 libio-sessiondata-perl all 1.03-3 [6316 B] Get: 206 http://deb.debian.org/debian forky/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 libjcode-pm-perl amd64 2.07-1 [28.5 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 liblist-moreutils-xs-perl amd64 0.430-4+b2 [42.1 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get: 211 http://deb.debian.org/debian forky/main amd64 libmailtools-perl all 2.22-1 [88.8 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 libmath-derivative-perl all 1.01-3 [8060 B] Get: 213 http://deb.debian.org/debian forky/main amd64 libmath-spline-perl all 0.02-4 [6808 B] Get: 214 http://deb.debian.org/debian forky/main amd64 libmime-tools-perl all 5.515-1 [203 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 libmodule-build-perl all 0.423400-3 [234 kB] Get: 216 http://deb.debian.org/debian forky/main amd64 libole-storage-lite-perl all 0.22-1 [22.8 kB] Get: 217 http://deb.debian.org/debian forky/main amd64 libpadwalker-perl amd64 2.5-1+b6 [18.6 kB] Get: 218 http://deb.debian.org/debian forky/main amd64 libpath-class-perl all 0.37-4 [42.7 kB] Get: 219 http://deb.debian.org/debian forky/main amd64 libperlio-eol-perl amd64 0.19-1+b3 [15.4 kB] Get: 220 http://deb.debian.org/debian forky/main amd64 libpostscript-perl all 0.06-3.1 [26.0 kB] Get: 221 http://deb.debian.org/debian forky/main amd64 libset-scalar-perl all 1.29-3 [32.1 kB] Get: 222 http://deb.debian.org/debian forky/main amd64 libtask-weaken-perl all 1.06-2 [9364 B] Get: 223 http://deb.debian.org/debian forky/main amd64 libsoap-lite-perl all 1.27-3 [239 kB] Get: 224 http://deb.debian.org/debian forky/main amd64 libsort-naturally-perl all 1.03-4 [13.1 kB] Get: 225 http://deb.debian.org/debian forky/main amd64 libspreadsheet-writeexcel-perl all 2.40-4 [503 kB] Get: 226 http://deb.debian.org/debian forky/main amd64 libunicode-map-perl amd64 0.112-13+b5 [145 kB] Get: 227 http://deb.debian.org/debian forky/main amd64 libspreadsheet-parseexcel-perl all 0.6600-1 [126 kB] Get: 228 http://deb.debian.org/debian forky/main amd64 libstatistics-descriptive-perl all 3.0801-1 [62.8 kB] Get: 229 http://deb.debian.org/debian forky/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 230 http://deb.debian.org/debian forky/main amd64 libsvg-perl all 2.87-1 [64.3 kB] Get: 231 http://deb.debian.org/debian forky/main amd64 libtree-dagnode-perl all 1.35-1 [62.4 kB] Get: 232 http://deb.debian.org/debian forky/main amd64 libsvg-graph-perl all 0.02-4 [105 kB] Get: 233 http://deb.debian.org/debian forky/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 234 http://deb.debian.org/debian forky/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 235 http://deb.debian.org/debian forky/main amd64 libtest-differences-perl all 0.72-1 [17.7 kB] Get: 236 http://deb.debian.org/debian forky/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 237 http://deb.debian.org/debian forky/main amd64 libtest-memory-cycle-perl all 1.06-2 [11.4 kB] Get: 238 http://deb.debian.org/debian forky/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 239 http://deb.debian.org/debian forky/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 240 http://deb.debian.org/debian forky/main amd64 libtest-pod-perl all 1.52-3 [12.6 kB] Get: 241 http://deb.debian.org/debian forky/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Get: 242 http://deb.debian.org/debian forky/main amd64 libtest-weaken-perl all 3.022000-2 [35.3 kB] Get: 243 http://deb.debian.org/debian forky/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get: 244 http://deb.debian.org/debian forky/main amd64 libxml-regexp-perl all 0.04-2 [6916 B] Get: 245 http://deb.debian.org/debian forky/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get: 246 http://deb.debian.org/debian forky/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get: 247 http://deb.debian.org/debian forky/main amd64 libxml-dom-xpath-perl all 0.14-4 [9352 B] Get: 248 http://deb.debian.org/debian forky/main amd64 libxml-filter-buffertext-perl all 1.01-7 [7136 B] Get: 249 http://deb.debian.org/debian forky/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6+b1 [314 kB] Get: 250 http://deb.debian.org/debian forky/main amd64 libxml-sax-expatxs-perl amd64 1.33-3+b4 [115 kB] Get: 251 http://deb.debian.org/debian forky/main amd64 libxml-sax-writer-perl all 0.57-3 [19.6 kB] Get: 252 http://deb.debian.org/debian forky/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get: 253 http://deb.debian.org/debian forky/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get: 254 http://deb.debian.org/debian forky/main amd64 rename all 2.02-1 [21.8 kB] Fetched 49.7 MB in 11s (4584 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libproc2-0:amd64. 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Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../209-libnet-smtp-ssl-perl_1.04-2_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../210-libmailtools-perl_2.22-1_all.deb ... Unpacking libmailtools-perl (2.22-1) ... Selecting previously unselected package libmath-derivative-perl. Preparing to unpack .../211-libmath-derivative-perl_1.01-3_all.deb ... Unpacking libmath-derivative-perl (1.01-3) ... Selecting previously unselected package libmath-spline-perl. Preparing to unpack .../212-libmath-spline-perl_0.02-4_all.deb ... Unpacking libmath-spline-perl (0.02-4) ... Selecting previously unselected package libmime-tools-perl. Preparing to unpack .../213-libmime-tools-perl_5.515-1_all.deb ... Unpacking libmime-tools-perl (5.515-1) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../214-libmodule-build-perl_0.423400-3_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-3) ... Selecting previously unselected package libole-storage-lite-perl. Preparing to unpack .../215-libole-storage-lite-perl_0.22-1_all.deb ... Unpacking libole-storage-lite-perl (0.22-1) ... Selecting previously unselected package libpadwalker-perl. Preparing to unpack .../216-libpadwalker-perl_2.5-1+b6_amd64.deb ... Unpacking libpadwalker-perl (2.5-1+b6) ... Selecting previously unselected package libpath-class-perl. Preparing to unpack .../217-libpath-class-perl_0.37-4_all.deb ... Unpacking libpath-class-perl (0.37-4) ... Selecting previously unselected package libperlio-eol-perl. 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Selecting previously unselected package libspreadsheet-writeexcel-perl. Preparing to unpack .../224-libspreadsheet-writeexcel-perl_2.40-4_all.deb ... Unpacking libspreadsheet-writeexcel-perl (2.40-4) ... Selecting previously unselected package libunicode-map-perl. Preparing to unpack .../225-libunicode-map-perl_0.112-13+b5_amd64.deb ... Unpacking libunicode-map-perl (0.112-13+b5) ... Selecting previously unselected package libspreadsheet-parseexcel-perl. Preparing to unpack .../226-libspreadsheet-parseexcel-perl_0.6600-1_all.deb ... Unpacking libspreadsheet-parseexcel-perl (0.6600-1) ... Selecting previously unselected package libstatistics-descriptive-perl. Preparing to unpack .../227-libstatistics-descriptive-perl_3.0801-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0801-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../228-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... 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Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../251-libxml-simple-perl_2.25-2_all.deb ... Unpacking libxml-simple-perl (2.25-2) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../252-libyaml-perl_1.31-1_all.deb ... Unpacking libyaml-perl (1.31-1) ... Selecting previously unselected package rename. Preparing to unpack .../253-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libjcode-pm-perl (2.07-1) ... Setting up libpipeline1:amd64 (1.5.8-2) ... Setting up libio-sessiondata-perl (1.03-3) ... Setting up libgraphite2-3:amd64 (1.3.14-11) ... Setting up libpixman-1-0:amd64 (0.46.4-1) ... Setting up libperlio-eol-perl (0.19-1+b3) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libdevel-cycle-perl (1.12-2) ... Setting up libaom3:amd64 (3.13.1-2) ... Setting up libfile-slurper-perl (0.014-1) ... Setting up mysql-common (5.8+1.1.1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libtask-weaken-perl (1.06-2) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libconvert-binary-c-perl (0.86-1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libdatrie1:amd64 (0.2.14-1) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libxml-regexp-perl (0.04-2) ... Setting up libalgorithm-munkres-perl (0.08-5) ... Setting up libio-pty-perl (1:1.20-1+b3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libpath-class-perl (0.37-4) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libfcgi0t64:amd64 (2.4.5-0.1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-1) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libipc-sharelite-perl (0.17-5+b3) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up libheap-perl (0.80-5) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up liblab-gamut1:amd64 (2.42.4-3) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libtest-weaken-perl (3.022000-2) ... Setting up libclass-unload-perl (0.12-1) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtest-pod-perl (1.52-3) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libsvg-perl (2.87-1) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.20-2) ... Setting up libpadwalker-perl (2.5-1+b6) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libyaml-perl (1.31-1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up libmodule-build-perl (0.423400-3) ... Setting up libkrb5support0:amd64 (1.22.1-2) ... Setting up librav1e0.8:amd64 (0.8.1-6) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up liberror-perl (0.17030-1) ... Setting up mariadb-common (1:11.8.3-1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libdigest-perl-md5-perl (1.9-5) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libunicode-map-perl (0.112-13+b5) ... Setting up libtest-memory-cycle-perl (1.06-2) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libset-object-perl (1.43-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up libpathplan4:amd64 (2.42.4-3) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libcrypt-rc4-perl (2.02-5) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.51-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.2-1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ... Setting up libmariadb3:amd64 (1:11.8.3-1+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libipc-run-perl (20250809.0-1) ... Setting up liblist-moreutils-xs-perl (0.430-4+b2) ... Setting up libmath-derivative-perl (1.01-3) ... Setting up libk5crypto3:amd64 (1.22.1-2) ... Setting up libltdl7:amd64 (2.5.4-7) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libset-scalar-perl (1.29-3) ... Setting up libole-storage-lite-perl (0.22-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libtree-dagnode-perl (1.35-1) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up libdav1d7:amd64 (1.5.2-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libfcgi-perl (0.82+ds-3+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.5) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libcdt5:amd64 (2.42.4-3) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libcgraph6:amd64 (2.42.4-3) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libexporter-tiny-perl (1.006002-1) ... Setting up libde265-0:amd64 (1.0.16-1) ... Setting up openssl (3.5.4-1) ... Setting up libyuv0:amd64 (0.0.1919.20250919-1) ... Setting up libpostscript-perl (0.06-3.1) ... Setting up libsort-naturally-perl (1.03-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.34-2) ... Setting up libdbi-perl:amd64 (1.647-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libmath-spline-perl (0.02-4) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libavif16:amd64 (1.3.0-1+b1) ... Setting up gettext (0.23.2-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libcache-cache-perl (1.08-3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtype-tiny-perl (2.008004-1) ... Setting up libtest-differences-perl (0.72-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libnet-http-perl (6.24-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libgraph-perl (1:0.9735-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2) ... Setting up libspreadsheet-writeexcel-perl (2.40-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.86.2-1) ... No schema files found: doing nothing. Setting up libtest-exception-perl (0.43-3) ... Setting up libbio-samtools-perl (1.43-5+b1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libdbd-mysql-perl:amd64 (4.053-1) ... Setting up libace-perl (1.92-13) ... Setting up ucf (3.0052) ... Setting up libspreadsheet-parseexcel-perl (0.6600-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libgvpr2:amd64 (2.42.4-3) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Setting up libdbd-sqlite3-perl:amd64 (1.76-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libstatistics-descriptive-perl (3.0801-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libpq5:amd64 (18.1-1) ... Setting up libdbd-pg-perl (3.18.0-2) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libmailtools-perl (2.22-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up libxml-filter-buffertext-perl (1.01-7) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-2) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up libxml-sax-writer-perl (0.57-3) ... Setting up libsvg-graph-perl (0.02-4) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up libxml-sax-expatxs-perl (1.33-3+b4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::ExpatXS with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up debhelper (13.28) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up libmime-tools-perl (5.515-1) ... Setting up libarray-compare-perl (3.0.8-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libheif-plugin-libde265:amd64 (1.20.2-2+b1) ... Setting up libwww-perl (6.81-1) ... Setting up libheif1:amd64 (1.20.2-2+b1) ... Setting up libgd3:amd64 (2.3.3-13) ... Setting up libgvc6 (2.42.4-3) ... Setting up libheif-plugin-dav1d:amd64 (1.20.2-2+b1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up graphviz (2.42.4-3) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.54-1) ... Setting up libxml-xpath-perl (1.48-1) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libgd-perl (2.83-1) ... Setting up libxml-perl (0.08-4) ... Setting up libsoap-lite-perl (1.27-3) ... Setting up libgraphviz-perl (2.24-1) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libbio-asn1-entrezgene-perl (1.730-3) ... Setting up libxml-dom-xpath-perl (0.14-4) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/bioperl-1.7.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bioperl_1.7.8-2_source.changes dpkg-buildpackage: info: source package bioperl dpkg-buildpackage: info: source version 1.7.8-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by gregor herrmann dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/bioperl-1.7.8' dh_auto_configure -- /usr/bin/perl Makefile.PL INSTALLDIRS=vendor OPTIMIZE="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioperl-1.7.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" LD="x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioperl-1.7.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for BioPerl Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/bioperl-1.7.8' dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/bioperl-1.7.8' cp lib/Bio/AlignIO/emboss.pm blib/lib/Bio/AlignIO/emboss.pm cp lib/Bio/Align/ProteinStatistics.pm blib/lib/Bio/Align/ProteinStatistics.pm cp lib/Bio/Annotation/Comment.pm blib/lib/Bio/Annotation/Comment.pm cp lib/Bio/AlignIO/msf.pm blib/lib/Bio/AlignIO/msf.pm cp lib/Bio/Align/PairwiseStatistics.pm blib/lib/Bio/Align/PairwiseStatistics.pm cp lib/Bio/Align/AlignI.pm blib/lib/Bio/Align/AlignI.pm cp lib/Bio/Annotation/Collection.pm blib/lib/Bio/Annotation/Collection.pm cp lib/Bio/Annotation/DBLink.pm blib/lib/Bio/Annotation/DBLink.pm cp lib/Bio/Annotation/Reference.pm blib/lib/Bio/Annotation/Reference.pm cp lib/Bio/Align/Utilities.pm blib/lib/Bio/Align/Utilities.pm cp lib/Bio/AlignIO/proda.pm blib/lib/Bio/AlignIO/proda.pm cp lib/Bio/AlignIO/maf.pm blib/lib/Bio/AlignIO/maf.pm cp lib/Bio/AlignIO.pm blib/lib/Bio/AlignIO.pm cp lib/Bio/AlignIO/mega.pm blib/lib/Bio/AlignIO/mega.pm cp lib/Bio/AlignIO/clustalw.pm blib/lib/Bio/AlignIO/clustalw.pm cp lib/Bio/AlignIO/bl2seq.pm blib/lib/Bio/AlignIO/bl2seq.pm cp lib/Bio/Annotation/AnnotationFactory.pm blib/lib/Bio/Annotation/AnnotationFactory.pm cp lib/Bio/Align/StatisticsI.pm blib/lib/Bio/Align/StatisticsI.pm cp lib/Bio/AlignIO/arp.pm blib/lib/Bio/AlignIO/arp.pm cp lib/Bio/AlignIO/largemultifasta.pm blib/lib/Bio/AlignIO/largemultifasta.pm cp lib/Bio/Annotation/Relation.pm blib/lib/Bio/Annotation/Relation.pm cp lib/Bio/AlignIO/phylip.pm blib/lib/Bio/AlignIO/phylip.pm cp lib/Bio/AnalysisParserI.pm blib/lib/Bio/AnalysisParserI.pm cp lib/Bio/AlignIO/metafasta.pm blib/lib/Bio/AlignIO/metafasta.pm cp lib/Bio/AlignIO/mase.pm blib/lib/Bio/AlignIO/mase.pm cp lib/Bio/AlignIO/xmfa.pm blib/lib/Bio/AlignIO/xmfa.pm cp lib/Bio/AnalysisResultI.pm blib/lib/Bio/AnalysisResultI.pm cp lib/Bio/AnnotatableI.pm blib/lib/Bio/AnnotatableI.pm cp lib/Bio/AlignIO/Handler/GenericAlignHandler.pm blib/lib/Bio/AlignIO/Handler/GenericAlignHandler.pm cp lib/Bio/Annotation/OntologyTerm.pm blib/lib/Bio/Annotation/OntologyTerm.pm cp lib/Bio/AlignIO/selex.pm blib/lib/Bio/AlignIO/selex.pm cp lib/Bio/AlignIO/pfam.pm blib/lib/Bio/AlignIO/pfam.pm cp lib/Bio/Align/DNAStatistics.pm blib/lib/Bio/Align/DNAStatistics.pm cp lib/Bio/AlignIO/fasta.pm blib/lib/Bio/AlignIO/fasta.pm cp lib/Bio/AnalysisI.pm blib/lib/Bio/AnalysisI.pm cp lib/Bio/AlignIO/nexus.pm blib/lib/Bio/AlignIO/nexus.pm cp lib/Bio/AlignIO/po.pm blib/lib/Bio/AlignIO/po.pm cp lib/Bio/AlignIO/meme.pm blib/lib/Bio/AlignIO/meme.pm cp lib/Bio/AlignIO/prodom.pm blib/lib/Bio/AlignIO/prodom.pm cp lib/Bio/AlignIO/psi.pm blib/lib/Bio/AlignIO/psi.pm cp lib/Bio/DB/LocationI.pm blib/lib/Bio/DB/LocationI.pm cp lib/Bio/DB/GFF/Util/Rearrange.pm blib/lib/Bio/DB/GFF/Util/Rearrange.pm cp lib/Bio/DB/Flat/BDB/genbank.pm blib/lib/Bio/DB/Flat/BDB/genbank.pm cp lib/Bio/DB/Taxonomy.pm blib/lib/Bio/DB/Taxonomy.pm cp lib/Bio/DB/Taxonomy/flatfile.pm blib/lib/Bio/DB/Taxonomy/flatfile.pm cp lib/Bio/DB/Flat/BinarySearch.pm blib/lib/Bio/DB/Flat/BinarySearch.pm cp lib/Bio/AnnotationI.pm blib/lib/Bio/AnnotationI.pm cp lib/Bio/DB/ReferenceI.pm blib/lib/Bio/DB/ReferenceI.pm cp lib/Bio/DB/GenericWebAgent.pm blib/lib/Bio/DB/GenericWebAgent.pm cp lib/Bio/Annotation/SimpleValue.pm blib/lib/Bio/Annotation/SimpleValue.pm cp lib/Bio/DB/UpdateableSeqI.pm blib/lib/Bio/DB/UpdateableSeqI.pm cp lib/Bio/Annotation/Tree.pm blib/lib/Bio/Annotation/Tree.pm cp lib/Bio/DB/Qual.pm blib/lib/Bio/DB/Qual.pm cp lib/Bio/DB/Registry.pm blib/lib/Bio/DB/Registry.pm cp lib/Bio/DB/Flat/BDB.pm blib/lib/Bio/DB/Flat/BDB.pm cp lib/Bio/CodonUsage/Table.pm blib/lib/Bio/CodonUsage/Table.pm cp lib/Bio/DB/Taxonomy/list.pm blib/lib/Bio/DB/Taxonomy/list.pm cp lib/Bio/DB/Taxonomy/greengenes.pm blib/lib/Bio/DB/Taxonomy/greengenes.pm cp lib/Bio/Annotation/TypeManager.pm blib/lib/Bio/Annotation/TypeManager.pm cp lib/Bio/DB/Failover.pm blib/lib/Bio/DB/Failover.pm cp lib/Bio/Annotation/Target.pm blib/lib/Bio/Annotation/Target.pm cp lib/Bio/DB/QueryI.pm blib/lib/Bio/DB/QueryI.pm cp lib/Bio/DB/SeqI.pm blib/lib/Bio/DB/SeqI.pm cp lib/Bio/DB/Flat.pm blib/lib/Bio/DB/Flat.pm cp lib/Bio/DB/RandomAccessI.pm blib/lib/Bio/DB/RandomAccessI.pm cp lib/Bio/DB/FileCache.pm blib/lib/Bio/DB/FileCache.pm cp lib/Bio/DB/IndexedBase.pm blib/lib/Bio/DB/IndexedBase.pm cp lib/Bio/DB/GFF/Util/Binning.pm blib/lib/Bio/DB/GFF/Util/Binning.pm cp lib/Bio/Annotation/StructuredValue.pm blib/lib/Bio/Annotation/StructuredValue.pm cp lib/Bio/DB/Taxonomy/silva.pm blib/lib/Bio/DB/Taxonomy/silva.pm cp lib/Bio/AnnotationCollectionI.pm blib/lib/Bio/AnnotationCollectionI.pm cp lib/Bio/DB/DBFetch.pm blib/lib/Bio/DB/DBFetch.pm cp lib/Bio/DB/InMemoryCache.pm blib/lib/Bio/DB/InMemoryCache.pm cp lib/Bio/Annotation/TagTree.pm blib/lib/Bio/Annotation/TagTree.pm cp lib/Bio/DB/Query/WebQuery.pm blib/lib/Bio/DB/Query/WebQuery.pm cp lib/Bio/DB/Flat/BDB/embl.pm blib/lib/Bio/DB/Flat/BDB/embl.pm cp lib/Bio/DB/Flat/BDB/swiss.pm blib/lib/Bio/DB/Flat/BDB/swiss.pm cp lib/Bio/DB/Flat/BDB/fasta.pm blib/lib/Bio/DB/Flat/BDB/fasta.pm cp lib/Bio/DB/Fasta.pm blib/lib/Bio/DB/Fasta.pm cp lib/Bio/CodonUsage/IO.pm blib/lib/Bio/CodonUsage/IO.pm cp lib/Bio/Das/FeatureTypeI.pm blib/lib/Bio/Das/FeatureTypeI.pm cp lib/Bio/Event/EventHandlerI.pm blib/lib/Bio/Event/EventHandlerI.pm cp lib/Bio/Index/Abstract.pm blib/lib/Bio/Index/Abstract.pm cp lib/Bio/Index/Qual.pm blib/lib/Bio/Index/Qual.pm cp lib/Bio/Factory/ObjectBuilderI.pm blib/lib/Bio/Factory/ObjectBuilderI.pm cp lib/Bio/Index/Swissprot.pm blib/lib/Bio/Index/Swissprot.pm cp lib/Bio/Index/SwissPfam.pm blib/lib/Bio/Index/SwissPfam.pm cp lib/Bio/Factory/SequenceStreamI.pm blib/lib/Bio/Factory/SequenceStreamI.pm cp lib/Bio/Index/Fastq.pm blib/lib/Bio/Index/Fastq.pm cp lib/Bio/DBLinkContainerI.pm blib/lib/Bio/DBLinkContainerI.pm cp lib/Bio/Index/AbstractSeq.pm blib/lib/Bio/Index/AbstractSeq.pm cp lib/Bio/Index/Fasta.pm blib/lib/Bio/Index/Fasta.pm cp lib/Bio/Factory/SequenceFactoryI.pm blib/lib/Bio/Factory/SequenceFactoryI.pm cp lib/Bio/Factory/ApplicationFactoryI.pm blib/lib/Bio/Factory/ApplicationFactoryI.pm cp lib/Bio/DasI.pm blib/lib/Bio/DasI.pm cp lib/Bio/DescribableI.pm blib/lib/Bio/DescribableI.pm cp lib/Bio/Factory/ObjectFactory.pm blib/lib/Bio/Factory/ObjectFactory.pm cp lib/Bio/Factory/DriverFactory.pm blib/lib/Bio/Factory/DriverFactory.pm cp lib/Bio/Factory/AnalysisI.pm blib/lib/Bio/Factory/AnalysisI.pm cp lib/Bio/Index/BlastTable.pm blib/lib/Bio/Index/BlastTable.pm cp lib/Bio/Event/EventGeneratorI.pm blib/lib/Bio/Event/EventGeneratorI.pm cp lib/Bio/Factory/SequenceProcessorI.pm blib/lib/Bio/Factory/SequenceProcessorI.pm cp lib/Bio/DB/WebDBSeqI.pm blib/lib/Bio/DB/WebDBSeqI.pm cp lib/Bio/IdCollectionI.pm blib/lib/Bio/IdCollectionI.pm cp lib/Bio/Factory/FTLocationFactory.pm blib/lib/Bio/Factory/FTLocationFactory.pm cp lib/Bio/IdentifiableI.pm blib/lib/Bio/IdentifiableI.pm cp lib/Bio/Factory/TreeFactoryI.pm blib/lib/Bio/Factory/TreeFactoryI.pm cp lib/Bio/Index/EMBL.pm blib/lib/Bio/Index/EMBL.pm cp lib/Bio/Das/SegmentI.pm blib/lib/Bio/Das/SegmentI.pm cp lib/Bio/Factory/SeqAnalysisParserFactory.pm blib/lib/Bio/Factory/SeqAnalysisParserFactory.pm cp lib/Bio/Index/Blast.pm blib/lib/Bio/Index/Blast.pm cp lib/Bio/Index/GenBank.pm blib/lib/Bio/Index/GenBank.pm cp lib/Bio/Factory/SeqAnalysisParserFactoryI.pm blib/lib/Bio/Factory/SeqAnalysisParserFactoryI.pm cp lib/Bio/LocatableSeq.pm blib/lib/Bio/LocatableSeq.pm cp lib/Bio/Factory/ObjectFactoryI.pm blib/lib/Bio/Factory/ObjectFactoryI.pm cp lib/Bio/HandlerBaseI.pm blib/lib/Bio/HandlerBaseI.pm cp lib/Bio/FeatureHolderI.pm blib/lib/Bio/FeatureHolderI.pm cp lib/Bio/Factory/LocationFactoryI.pm blib/lib/Bio/Factory/LocationFactoryI.pm cp lib/Bio/Matrix/IO/mlagan.pm blib/lib/Bio/Matrix/IO/mlagan.pm cp lib/Bio/Matrix/IO/scoring.pm blib/lib/Bio/Matrix/IO/scoring.pm cp lib/Bio/Matrix/PSM/ProtMatrix.pm blib/lib/Bio/Matrix/PSM/ProtMatrix.pm cp lib/Bio/Matrix/IO.pm blib/lib/Bio/Matrix/IO.pm cp lib/Bio/Matrix/PSM/InstanceSiteI.pm blib/lib/Bio/Matrix/PSM/InstanceSiteI.pm cp lib/Bio/Matrix/PSM/InstanceSite.pm blib/lib/Bio/Matrix/PSM/InstanceSite.pm cp lib/Bio/Matrix/PSM/PsmHeaderI.pm blib/lib/Bio/Matrix/PSM/PsmHeaderI.pm cp lib/Bio/Matrix/PSM/SiteMatrixI.pm blib/lib/Bio/Matrix/PSM/SiteMatrixI.pm cp lib/Bio/Matrix/Generic.pm blib/lib/Bio/Matrix/Generic.pm cp lib/Bio/Location/Split.pm blib/lib/Bio/Location/Split.pm cp lib/Bio/Location/WidestCoordPolicy.pm blib/lib/Bio/Location/WidestCoordPolicy.pm cp lib/Bio/Ontology/DocumentRegistry.pm blib/lib/Bio/Ontology/DocumentRegistry.pm cp lib/Bio/LocationI.pm blib/lib/Bio/LocationI.pm cp lib/Bio/Matrix/PSM/Psm.pm blib/lib/Bio/Matrix/PSM/Psm.pm cp lib/Bio/Location/NarrowestCoordPolicy.pm blib/lib/Bio/Location/NarrowestCoordPolicy.pm cp lib/Bio/Matrix/PSM/ProtPsm.pm blib/lib/Bio/Matrix/PSM/ProtPsm.pm cp lib/Bio/Location/Atomic.pm blib/lib/Bio/Location/Atomic.pm cp lib/Bio/Matrix/MatrixI.pm blib/lib/Bio/Matrix/MatrixI.pm cp lib/Bio/Location/AvWithinCoordPolicy.pm blib/lib/Bio/Location/AvWithinCoordPolicy.pm cp lib/Bio/Matrix/PSM/PsmHeader.pm blib/lib/Bio/Matrix/PSM/PsmHeader.pm cp lib/Bio/Matrix/PSM/PsmI.pm blib/lib/Bio/Matrix/PSM/PsmI.pm cp lib/Bio/Matrix/PSM/IO/masta.pm blib/lib/Bio/Matrix/PSM/IO/masta.pm cp lib/Bio/Matrix/PSM/IO/meme.pm blib/lib/Bio/Matrix/PSM/IO/meme.pm cp lib/Bio/Matrix/PSM/IO/psiblast.pm blib/lib/Bio/Matrix/PSM/IO/psiblast.pm cp lib/Bio/Matrix/PSM/IO/mast.pm blib/lib/Bio/Matrix/PSM/IO/mast.pm cp lib/Bio/Location/Simple.pm blib/lib/Bio/Location/Simple.pm cp lib/Bio/Matrix/PSM/IO.pm blib/lib/Bio/Matrix/PSM/IO.pm cp lib/Bio/Location/FuzzyLocationI.pm blib/lib/Bio/Location/FuzzyLocationI.pm cp lib/Bio/Location/Fuzzy.pm blib/lib/Bio/Location/Fuzzy.pm cp lib/Bio/Matrix/Mlagan.pm blib/lib/Bio/Matrix/Mlagan.pm cp lib/Bio/Location/SplitLocationI.pm blib/lib/Bio/Location/SplitLocationI.pm cp lib/Bio/Matrix/PSM/SiteMatrix.pm blib/lib/Bio/Matrix/PSM/SiteMatrix.pm cp lib/Bio/Matrix/PhylipDist.pm blib/lib/Bio/Matrix/PhylipDist.pm cp lib/Bio/Matrix/PSM/IO/transfac.pm blib/lib/Bio/Matrix/PSM/IO/transfac.pm cp lib/Bio/Location/CoordinatePolicyI.pm blib/lib/Bio/Location/CoordinatePolicyI.pm cp lib/Bio/Matrix/IO/phylip.pm blib/lib/Bio/Matrix/IO/phylip.pm cp lib/Bio/Matrix/Scoring.pm blib/lib/Bio/Matrix/Scoring.pm cp lib/Bio/Root/Exception.pm blib/lib/Bio/Root/Exception.pm cp lib/Bio/Ontology/OntologyStore.pm blib/lib/Bio/Ontology/OntologyStore.pm cp lib/Bio/ParameterBaseI.pm blib/lib/Bio/ParameterBaseI.pm cp lib/Bio/Range.pm blib/lib/Bio/Range.pm cp lib/Bio/Ontology/Relationship.pm blib/lib/Bio/Ontology/Relationship.pm cp lib/Bio/Ontology/OntologyI.pm blib/lib/Bio/Ontology/OntologyI.pm cp lib/Bio/PrimarySeqI.pm blib/lib/Bio/PrimarySeqI.pm cp lib/Bio/Ontology/OBOterm.pm blib/lib/Bio/Ontology/OBOterm.pm cp lib/Bio/Ontology/GOterm.pm blib/lib/Bio/Ontology/GOterm.pm cp lib/Bio/OntologyIO.pm blib/lib/Bio/OntologyIO.pm cp lib/Bio/OntologyIO/simplehierarchy.pm blib/lib/Bio/OntologyIO/simplehierarchy.pm cp lib/Bio/OntologyIO/dagflat.pm blib/lib/Bio/OntologyIO/dagflat.pm cp lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm blib/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm cp lib/Bio/Ontology/OBOEngine.pm blib/lib/Bio/Ontology/OBOEngine.pm cp lib/Bio/Ontology/Ontology.pm blib/lib/Bio/Ontology/Ontology.pm cp lib/Bio/Ontology/TermFactory.pm blib/lib/Bio/Ontology/TermFactory.pm cp lib/Bio/Ontology/OntologyEngineI.pm blib/lib/Bio/Ontology/OntologyEngineI.pm cp lib/Bio/Ontology/TermI.pm blib/lib/Bio/Ontology/TermI.pm cp lib/Bio/Ontology/PathI.pm blib/lib/Bio/Ontology/PathI.pm cp lib/Bio/RangeI.pm blib/lib/Bio/RangeI.pm cp lib/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm blib/lib/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm cp lib/Bio/Ontology/Term.pm blib/lib/Bio/Ontology/Term.pm cp lib/Bio/Ontology/Path.pm blib/lib/Bio/Ontology/Path.pm cp lib/Bio/OntologyIO/Handlers/BaseSAXHandler.pm blib/lib/Bio/OntologyIO/Handlers/BaseSAXHandler.pm cp lib/Bio/Ontology/SimpleOntologyEngine.pm blib/lib/Bio/Ontology/SimpleOntologyEngine.pm cp lib/Bio/PullParserI.pm blib/lib/Bio/PullParserI.pm cp lib/Bio/Ontology/RelationshipType.pm blib/lib/Bio/Ontology/RelationshipType.pm cp lib/Bio/Ontology/RelationshipI.pm blib/lib/Bio/Ontology/RelationshipI.pm cp lib/Bio/OntologyIO/obo.pm blib/lib/Bio/OntologyIO/obo.pm cp lib/Bio/PrimarySeq.pm blib/lib/Bio/PrimarySeq.pm cp lib/Bio/OntologyIO/soflat.pm blib/lib/Bio/OntologyIO/soflat.pm cp lib/Bio/OntologyIO/goflat.pm blib/lib/Bio/OntologyIO/goflat.pm cp lib/Bio/Ontology/RelationshipFactory.pm blib/lib/Bio/Ontology/RelationshipFactory.pm cp lib/Bio/OntologyIO/Handlers/InterProHandler.pm blib/lib/Bio/OntologyIO/Handlers/InterProHandler.pm cp lib/Bio/OntologyIO/InterProParser.pm blib/lib/Bio/OntologyIO/InterProParser.pm cp lib/Bio/Ontology/InterProTerm.pm blib/lib/Bio/Ontology/InterProTerm.pm cp lib/Bio/Search/HSP/PullHSPI.pm blib/lib/Bio/Search/HSP/PullHSPI.pm cp lib/Bio/Search/HSP/HSPFactory.pm blib/lib/Bio/Search/HSP/HSPFactory.pm cp lib/Bio/Search/Hit/BlastHit.pm blib/lib/Bio/Search/Hit/BlastHit.pm cp lib/Bio/Root/Utilities.pm blib/lib/Bio/Root/Utilities.pm cp lib/Bio/Root/TestObject.pm blib/lib/Bio/Root/TestObject.pm cp lib/Bio/Search/HSP/ModelHSP.pm blib/lib/Bio/Search/HSP/ModelHSP.pm cp lib/Bio/Search/Processor.pm blib/lib/Bio/Search/Processor.pm cp lib/Bio/Search/Hit/GenericHit.pm blib/lib/Bio/Search/Hit/GenericHit.pm cp lib/Bio/Search/Hit/ModelHit.pm blib/lib/Bio/Search/Hit/ModelHit.pm cp lib/Bio/Search/Iteration/GenericIteration.pm blib/lib/Bio/Search/Iteration/GenericIteration.pm cp lib/Bio/Search/Hit/PsiBlastHit.pm blib/lib/Bio/Search/Hit/PsiBlastHit.pm cp lib/Bio/Root/IO.pm blib/lib/Bio/Root/IO.pm cp lib/Bio/Search/BlastUtils.pm blib/lib/Bio/Search/BlastUtils.pm cp lib/Bio/Search/DatabaseI.pm blib/lib/Bio/Search/DatabaseI.pm cp lib/Bio/Search/GenericStatistics.pm blib/lib/Bio/Search/GenericStatistics.pm cp lib/Bio/Search/HSP/BlastPullHSP.pm blib/lib/Bio/Search/HSP/BlastPullHSP.pm cp lib/Bio/Search/Hit/PullHitI.pm blib/lib/Bio/Search/Hit/PullHitI.pm cp lib/Bio/Search/Hit/BlastPullHit.pm blib/lib/Bio/Search/Hit/BlastPullHit.pm cp lib/Bio/Search/Hit/HitFactory.pm blib/lib/Bio/Search/Hit/HitFactory.pm cp lib/Bio/Root/Test.pm blib/lib/Bio/Root/Test.pm cp lib/Bio/Search/HSP/BlastHSP.pm blib/lib/Bio/Search/HSP/BlastHSP.pm cp lib/Bio/Search/HSP/PsiBlastHSP.pm blib/lib/Bio/Search/HSP/PsiBlastHSP.pm cp lib/Bio/Search/Iteration/IterationI.pm blib/lib/Bio/Search/Iteration/IterationI.pm cp lib/Bio/Search/HSP/WABAHSP.pm blib/lib/Bio/Search/HSP/WABAHSP.pm cp lib/Bio/Search/Hit/Fasta.pm blib/lib/Bio/Search/Hit/Fasta.pm cp lib/Bio/Search/HSP/GenericHSP.pm blib/lib/Bio/Search/HSP/GenericHSP.pm cp lib/Bio/Root/Version.pm blib/lib/Bio/Root/Version.pm cp lib/Bio/Search/HSP/FastaHSP.pm blib/lib/Bio/Search/HSP/FastaHSP.pm cp lib/Bio/Search/HSP/PSLHSP.pm blib/lib/Bio/Search/HSP/PSLHSP.pm cp lib/Bio/Search/HSP/HSPI.pm blib/lib/Bio/Search/HSP/HSPI.pm cp lib/Bio/Search/BlastStatistics.pm blib/lib/Bio/Search/BlastStatistics.pm cp lib/Bio/Root/HTTPget.pm blib/lib/Bio/Root/HTTPget.pm cp lib/Bio/Search/Hit/HitI.pm blib/lib/Bio/Search/Hit/HitI.pm cp lib/Bio/Root/Storable.pm blib/lib/Bio/Root/Storable.pm cp lib/Bio/Root/Root.pm blib/lib/Bio/Root/Root.pm cp lib/Bio/Root/RootI.pm blib/lib/Bio/Root/RootI.pm cp lib/Bio/Search/GenericDatabase.pm blib/lib/Bio/Search/GenericDatabase.pm cp lib/Bio/SearchIO/Writer/ResultTableWriter.pm blib/lib/Bio/SearchIO/Writer/ResultTableWriter.pm cp lib/Bio/SearchIO/blast.pm blib/lib/Bio/SearchIO/blast.pm cp lib/Bio/Search/Result/WABAResult.pm blib/lib/Bio/Search/Result/WABAResult.pm cp lib/Bio/Search/Tiling/TilingI.pm blib/lib/Bio/Search/Tiling/TilingI.pm cp lib/Bio/SearchIO/SearchWriterI.pm blib/lib/Bio/SearchIO/SearchWriterI.pm cp lib/Bio/Search/Result/CrossMatchResult.pm blib/lib/Bio/Search/Result/CrossMatchResult.pm cp lib/Bio/Search/Result/BlastPullResult.pm blib/lib/Bio/Search/Result/BlastPullResult.pm cp lib/Bio/Search/Tiling/MapTiling.pm blib/lib/Bio/Search/Tiling/MapTiling.pm cp lib/Bio/Search/Result/ResultI.pm blib/lib/Bio/Search/Result/ResultI.pm cp lib/Bio/Search/Result/GenericResult.pm blib/lib/Bio/Search/Result/GenericResult.pm cp lib/Bio/SearchIO/erpin.pm blib/lib/Bio/SearchIO/erpin.pm cp lib/Bio/Search/SearchUtils.pm blib/lib/Bio/Search/SearchUtils.pm cp lib/Bio/Search/Result/BlastResult.pm blib/lib/Bio/Search/Result/BlastResult.pm cp lib/Bio/SearchIO/blast_pull.pm blib/lib/Bio/SearchIO/blast_pull.pm cp lib/Bio/Search/StatisticsI.pm blib/lib/Bio/Search/StatisticsI.pm cp lib/Bio/SearchIO/axt.pm blib/lib/Bio/SearchIO/axt.pm cp lib/Bio/SearchIO/Writer/GbrowseGFF.pm blib/lib/Bio/SearchIO/Writer/GbrowseGFF.pm cp lib/Bio/Search/Result/INFERNALResult.pm blib/lib/Bio/Search/Result/INFERNALResult.pm cp lib/Bio/Search/Result/ResultFactory.pm blib/lib/Bio/Search/Result/ResultFactory.pm cp lib/Bio/SearchIO/Writer/HitTableWriter.pm blib/lib/Bio/SearchIO/Writer/HitTableWriter.pm cp lib/Bio/SearchIO/IteratedSearchResultEventBuilder.pm blib/lib/Bio/SearchIO/IteratedSearchResultEventBuilder.pm cp lib/Bio/SearchIO.pm blib/lib/Bio/SearchIO.pm cp lib/Bio/SearchIO/Writer/TextResultWriter.pm blib/lib/Bio/SearchIO/Writer/TextResultWriter.pm cp lib/Bio/SearchIO/Writer/HTMLResultWriter.pm blib/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm cp lib/Bio/SearchIO/EventHandlerI.pm blib/lib/Bio/SearchIO/EventHandlerI.pm cp lib/Bio/Search/Result/PullResultI.pm blib/lib/Bio/Search/Result/PullResultI.pm cp lib/Bio/SearchIO/blasttable.pm blib/lib/Bio/SearchIO/blasttable.pm cp lib/Bio/Search/Tiling/MapTileUtils.pm blib/lib/Bio/Search/Tiling/MapTileUtils.pm cp lib/Bio/SearchIO/cross_match.pm blib/lib/Bio/SearchIO/cross_match.pm cp lib/Bio/SearchIO/FastHitEventBuilder.pm blib/lib/Bio/SearchIO/FastHitEventBuilder.pm cp lib/Bio/SearchIO/SearchResultEventBuilder.pm blib/lib/Bio/SearchIO/SearchResultEventBuilder.pm cp lib/Bio/SearchIO/Writer/HSPTableWriter.pm blib/lib/Bio/SearchIO/Writer/HSPTableWriter.pm cp lib/Bio/SeqFeature/Gene/Exon.pm blib/lib/Bio/SeqFeature/Gene/Exon.pm cp lib/Bio/Seq/LargePrimarySeq.pm blib/lib/Bio/Seq/LargePrimarySeq.pm cp lib/Bio/Seq/TraceI.pm blib/lib/Bio/Seq/TraceI.pm cp lib/Bio/SearchIO/rnamotif.pm blib/lib/Bio/SearchIO/rnamotif.pm cp lib/Bio/SearchIO/gmap_f9.pm blib/lib/Bio/SearchIO/gmap_f9.pm cp lib/Bio/SearchIO/sim4.pm blib/lib/Bio/SearchIO/sim4.pm cp lib/Bio/Seq/LargeSeq.pm blib/lib/Bio/Seq/LargeSeq.pm cp lib/Bio/Seq/QualI.pm blib/lib/Bio/Seq/QualI.pm cp lib/Bio/Seq/LargeLocatableSeq.pm blib/lib/Bio/Seq/LargeLocatableSeq.pm cp lib/Bio/Seq/SeqFastaSpeedFactory.pm blib/lib/Bio/Seq/SeqFastaSpeedFactory.pm cp lib/Bio/SearchIO/fasta.pm blib/lib/Bio/SearchIO/fasta.pm cp lib/Bio/Seq/SequenceTrace.pm blib/lib/Bio/Seq/SequenceTrace.pm cp lib/Bio/Seq/BaseSeqProcessor.pm blib/lib/Bio/Seq/BaseSeqProcessor.pm cp lib/Bio/SeqFeature/Computation.pm blib/lib/Bio/SeqFeature/Computation.pm cp lib/Bio/SearchIO/exonerate.pm blib/lib/Bio/SearchIO/exonerate.pm cp lib/Bio/Seq/Meta.pm blib/lib/Bio/Seq/Meta.pm cp lib/Bio/Seq/PrimaryQual.pm blib/lib/Bio/Seq/PrimaryQual.pm cp lib/Bio/Seq/RichSeq.pm blib/lib/Bio/Seq/RichSeq.pm cp lib/Bio/Seq/RichSeqI.pm blib/lib/Bio/Seq/RichSeqI.pm cp lib/Bio/Seq.pm blib/lib/Bio/Seq.pm cp lib/Bio/SearchIO/infernal.pm blib/lib/Bio/SearchIO/infernal.pm cp lib/Bio/SeqFeature/FeaturePair.pm blib/lib/Bio/SeqFeature/FeaturePair.pm cp lib/Bio/SearchIO/psl.pm blib/lib/Bio/SearchIO/psl.pm cp lib/Bio/SearchIO/megablast.pm blib/lib/Bio/SearchIO/megablast.pm cp lib/Bio/SeqFeature/Amplicon.pm blib/lib/Bio/SeqFeature/Amplicon.pm cp lib/Bio/SeqFeature/Collection.pm blib/lib/Bio/SeqFeature/Collection.pm cp lib/Bio/Seq/Quality.pm blib/lib/Bio/Seq/Quality.pm cp lib/Bio/Seq/PrimedSeq.pm blib/lib/Bio/Seq/PrimedSeq.pm cp lib/Bio/SeqAnalysisParserI.pm blib/lib/Bio/SeqAnalysisParserI.pm cp lib/Bio/Seq/SimulatedRead.pm blib/lib/Bio/Seq/SimulatedRead.pm cp lib/Bio/SearchIO/wise.pm blib/lib/Bio/SearchIO/wise.pm cp lib/Bio/SeqFeature/AnnotationAdaptor.pm blib/lib/Bio/SeqFeature/AnnotationAdaptor.pm cp lib/Bio/Seq/Meta/Array.pm blib/lib/Bio/Seq/Meta/Array.pm cp lib/Bio/Seq/MetaI.pm blib/lib/Bio/Seq/MetaI.pm cp lib/Bio/Seq/EncodedSeq.pm blib/lib/Bio/Seq/EncodedSeq.pm cp lib/Bio/SearchIO/waba.pm blib/lib/Bio/SearchIO/waba.pm cp lib/Bio/Seq/SeqFactory.pm blib/lib/Bio/Seq/SeqFactory.pm cp lib/Bio/Seq/LargeSeqI.pm blib/lib/Bio/Seq/LargeSeqI.pm cp lib/Bio/SeqFeature/CollectionI.pm blib/lib/Bio/SeqFeature/CollectionI.pm cp lib/Bio/Seq/SeqBuilder.pm blib/lib/Bio/Seq/SeqBuilder.pm cp lib/Bio/SeqFeature/Gene/ExonI.pm blib/lib/Bio/SeqFeature/Gene/ExonI.pm cp lib/Bio/SeqI.pm blib/lib/Bio/SeqI.pm cp lib/Bio/SeqFeature/Primer.pm blib/lib/Bio/SeqFeature/Primer.pm cp lib/Bio/SeqFeature/Tools/TypeMapper.pm blib/lib/Bio/SeqFeature/Tools/TypeMapper.pm cp lib/Bio/SeqFeature/Tools/FeatureNamer.pm blib/lib/Bio/SeqFeature/Tools/FeatureNamer.pm cp lib/Bio/SeqIO/embl.pm blib/lib/Bio/SeqIO/embl.pm cp lib/Bio/SeqIO/fastq.pm blib/lib/Bio/SeqIO/fastq.pm cp lib/Bio/SeqFeature/PositionProxy.pm blib/lib/Bio/SeqFeature/PositionProxy.pm cp lib/Bio/SeqIO/MultiFile.pm blib/lib/Bio/SeqIO/MultiFile.pm cp lib/Bio/SeqIO/fasta.pm blib/lib/Bio/SeqIO/fasta.pm cp lib/Bio/SeqFeature/Similarity.pm blib/lib/Bio/SeqFeature/Similarity.pm cp lib/Bio/SeqIO.pm blib/lib/Bio/SeqIO.pm cp lib/Bio/SeqFeature/Tools/IDHandler.pm blib/lib/Bio/SeqFeature/Tools/IDHandler.pm cp lib/Bio/SeqIO/bsml.pm blib/lib/Bio/SeqIO/bsml.pm cp lib/Bio/SeqIO/FTHelper.pm blib/lib/Bio/SeqIO/FTHelper.pm cp lib/Bio/SeqFeature/SimilarityPair.pm blib/lib/Bio/SeqFeature/SimilarityPair.pm cp lib/Bio/SeqFeature/TypedSeqFeatureI.pm blib/lib/Bio/SeqFeature/TypedSeqFeatureI.pm cp lib/Bio/SeqFeature/Gene/NC_Feature.pm blib/lib/Bio/SeqFeature/Gene/NC_Feature.pm cp lib/Bio/SeqFeature/SubSeq.pm blib/lib/Bio/SeqFeature/SubSeq.pm cp lib/Bio/SeqFeature/Gene/GeneStructureI.pm blib/lib/Bio/SeqFeature/Gene/GeneStructureI.pm cp lib/Bio/SeqFeature/Tools/Unflattener.pm blib/lib/Bio/SeqFeature/Tools/Unflattener.pm cp lib/Bio/SeqFeature/Gene/Poly_A_site.pm blib/lib/Bio/SeqFeature/Gene/Poly_A_site.pm cp lib/Bio/SeqIO/ace.pm blib/lib/Bio/SeqIO/ace.pm cp lib/Bio/SeqIO/bsml_sax.pm blib/lib/Bio/SeqIO/bsml_sax.pm cp lib/Bio/SeqFeature/Gene/TranscriptI.pm blib/lib/Bio/SeqFeature/Gene/TranscriptI.pm cp lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm blib/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm cp lib/Bio/SeqFeatureI.pm blib/lib/Bio/SeqFeatureI.pm cp lib/Bio/SeqFeature/Gene/Intron.pm blib/lib/Bio/SeqFeature/Gene/Intron.pm cp lib/Bio/SeqFeature/Gene/GeneStructure.pm blib/lib/Bio/SeqFeature/Gene/GeneStructure.pm cp lib/Bio/SeqIO/asciitree.pm blib/lib/Bio/SeqIO/asciitree.pm cp lib/Bio/SeqFeature/Lite.pm blib/lib/Bio/SeqFeature/Lite.pm cp lib/Bio/SeqFeature/Gene/Transcript.pm blib/lib/Bio/SeqFeature/Gene/Transcript.pm cp lib/Bio/SeqFeature/Generic.pm blib/lib/Bio/SeqFeature/Generic.pm cp lib/Bio/SeqFeature/Gene/UTR.pm blib/lib/Bio/SeqFeature/Gene/UTR.pm cp lib/Bio/SeqIO/embldriver.pm blib/lib/Bio/SeqIO/embldriver.pm cp lib/Bio/SeqFeature/Gene/Promoter.pm blib/lib/Bio/SeqFeature/Gene/Promoter.pm cp lib/Bio/SeqIO/tab.pm blib/lib/Bio/SeqIO/tab.pm cp lib/Bio/Tools/Alignment/Trim.pm blib/lib/Bio/Tools/Alignment/Trim.pm cp lib/Bio/SeqIO/scf.pm blib/lib/Bio/SeqIO/scf.pm cp lib/Bio/SeqIO/tinyseq.pm blib/lib/Bio/SeqIO/tinyseq.pm cp lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm blib/lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm cp lib/Bio/SeqIO/gbxml.pm blib/lib/Bio/SeqIO/gbxml.pm cp lib/Bio/SeqIO/table.pm blib/lib/Bio/SeqIO/table.pm cp lib/Bio/SeqIO/mbsout.pm blib/lib/Bio/SeqIO/mbsout.pm cp lib/Bio/Tools/AmpliconSearch.pm blib/lib/Bio/Tools/AmpliconSearch.pm cp lib/Bio/SeqIO/raw.pm blib/lib/Bio/SeqIO/raw.pm cp lib/Bio/SeqIO/gbdriver.pm blib/lib/Bio/SeqIO/gbdriver.pm cp lib/Bio/SimpleAlign.pm blib/lib/Bio/SimpleAlign.pm cp lib/Bio/SeqIO/seqxml.pm blib/lib/Bio/SeqIO/seqxml.pm cp lib/Bio/SeqIO/metafasta.pm blib/lib/Bio/SeqIO/metafasta.pm cp lib/Bio/SeqIO/game.pm blib/lib/Bio/SeqIO/game.pm cp lib/Bio/SeqIO/genbank.pm blib/lib/Bio/SeqIO/genbank.pm cp lib/Bio/SeqIO/kegg.pm blib/lib/Bio/SeqIO/kegg.pm cp lib/Bio/SeqIO/swiss.pm blib/lib/Bio/SeqIO/swiss.pm cp lib/Bio/Taxon.pm blib/lib/Bio/Taxon.pm cp lib/Bio/SeqIO/pir.pm blib/lib/Bio/SeqIO/pir.pm cp lib/Bio/SeqIO/locuslink.pm blib/lib/Bio/SeqIO/locuslink.pm cp lib/Bio/Species.pm blib/lib/Bio/Species.pm cp lib/Bio/SimpleAnalysisI.pm blib/lib/Bio/SimpleAnalysisI.pm cp lib/Bio/Tools/Blat.pm blib/lib/Bio/Tools/Blat.pm cp lib/Bio/SeqIO/qual.pm blib/lib/Bio/SeqIO/qual.pm cp lib/Bio/Tools/Alignment/Consed.pm blib/lib/Bio/Tools/Alignment/Consed.pm cp lib/Bio/SeqIO/msout.pm blib/lib/Bio/SeqIO/msout.pm cp lib/Bio/SeqIO/game/featHandler.pm blib/lib/Bio/SeqIO/game/featHandler.pm cp lib/Bio/SeqIO/game/gameHandler.pm blib/lib/Bio/SeqIO/game/gameHandler.pm cp lib/Bio/SeqIO/game/gameWriter.pm blib/lib/Bio/SeqIO/game/gameWriter.pm cp lib/Bio/SeqIO/game/seqHandler.pm blib/lib/Bio/SeqIO/game/seqHandler.pm cp lib/Bio/SeqIO/gcg.pm blib/lib/Bio/SeqIO/gcg.pm cp lib/Bio/SeqIO/swissdriver.pm blib/lib/Bio/SeqIO/swissdriver.pm cp lib/Bio/SeqIO/tigrxml.pm blib/lib/Bio/SeqIO/tigrxml.pm cp lib/Bio/SeqUtils.pm blib/lib/Bio/SeqUtils.pm cp lib/Bio/Tools/AnalysisResult.pm blib/lib/Bio/Tools/AnalysisResult.pm cp lib/Bio/SeqIO/game/gameSubs.pm blib/lib/Bio/SeqIO/game/gameSubs.pm cp lib/Bio/SeqIO/phd.pm blib/lib/Bio/SeqIO/phd.pm cp lib/Bio/SeqIO/largefasta.pm blib/lib/Bio/SeqIO/largefasta.pm cp lib/Bio/SeqIO/tigr.pm blib/lib/Bio/SeqIO/tigr.pm cp lib/Bio/Tools/Analysis/SimpleAnalysisBase.pm blib/lib/Bio/Tools/Analysis/SimpleAnalysisBase.pm cp lib/Bio/Tools/Prediction/Exon.pm blib/lib/Bio/Tools/Prediction/Exon.pm cp lib/Bio/Tools/Primer/Assessor/Base.pm blib/lib/Bio/Tools/Primer/Assessor/Base.pm cp lib/Bio/Tools/Coil.pm blib/lib/Bio/Tools/Coil.pm cp lib/Bio/Tools/Promoterwise.pm blib/lib/Bio/Tools/Promoterwise.pm cp lib/Bio/Tools/EPCR.pm blib/lib/Bio/Tools/EPCR.pm cp lib/Bio/Tools/Primer/Pair.pm blib/lib/Bio/Tools/Primer/Pair.pm cp lib/Bio/Tools/Pseudowise.pm blib/lib/Bio/Tools/Pseudowise.pm cp lib/Bio/Tools/Genomewise.pm blib/lib/Bio/Tools/Genomewise.pm cp lib/Bio/Tools/Prediction/Gene.pm blib/lib/Bio/Tools/Prediction/Gene.pm cp lib/Bio/Tools/Prints.pm blib/lib/Bio/Tools/Prints.pm cp lib/Bio/Tools/Phylo/Molphy/Result.pm blib/lib/Bio/Tools/Phylo/Molphy/Result.pm cp lib/Bio/Tools/Match.pm blib/lib/Bio/Tools/Match.pm cp lib/Bio/Tools/Primer/Feature.pm blib/lib/Bio/Tools/Primer/Feature.pm cp lib/Bio/Tools/Phylo/Molphy.pm blib/lib/Bio/Tools/Phylo/Molphy.pm cp lib/Bio/Tools/MZEF.pm blib/lib/Bio/Tools/MZEF.pm cp lib/Bio/Tools/EMBOSS/Palindrome.pm blib/lib/Bio/Tools/EMBOSS/Palindrome.pm cp lib/Bio/Tools/Profile.pm blib/lib/Bio/Tools/Profile.pm cp lib/Bio/Tools/Lucy.pm blib/lib/Bio/Tools/Lucy.pm cp lib/Bio/Tools/Glimmer.pm blib/lib/Bio/Tools/Glimmer.pm cp lib/Bio/Tools/Phylo/Phylip/ProtDist.pm blib/lib/Bio/Tools/Phylo/Phylip/ProtDist.pm cp lib/Bio/Tools/Genemark.pm blib/lib/Bio/Tools/Genemark.pm cp lib/Bio/Tools/Est2Genome.pm blib/lib/Bio/Tools/Est2Genome.pm cp lib/Bio/Tools/GuessSeqFormat.pm blib/lib/Bio/Tools/GuessSeqFormat.pm cp lib/Bio/Tools/ESTScan.pm blib/lib/Bio/Tools/ESTScan.pm cp lib/Bio/Tools/Primer/AssessorI.pm blib/lib/Bio/Tools/Primer/AssessorI.pm cp lib/Bio/Tools/CodonTable.pm blib/lib/Bio/Tools/CodonTable.pm cp lib/Bio/Tools/OddCodes.pm blib/lib/Bio/Tools/OddCodes.pm cp lib/Bio/Tools/FootPrinter.pm blib/lib/Bio/Tools/FootPrinter.pm cp lib/Bio/Tools/Geneid.pm blib/lib/Bio/Tools/Geneid.pm cp lib/Bio/Tools/Genscan.pm blib/lib/Bio/Tools/Genscan.pm cp lib/Bio/Tools/PrositeScan.pm blib/lib/Bio/Tools/PrositeScan.pm cp lib/Bio/Tools/Genewise.pm blib/lib/Bio/Tools/Genewise.pm cp lib/Bio/Tools/IUPAC.pm blib/lib/Bio/Tools/IUPAC.pm cp lib/Bio/Tools/Eponine.pm blib/lib/Bio/Tools/Eponine.pm cp lib/Bio/Tools/Grail.pm blib/lib/Bio/Tools/Grail.pm cp lib/Bio/Tools/Primer3.pm blib/lib/Bio/Tools/Primer3.pm cp lib/Bio/Tools/Phylo/Gerp.pm blib/lib/Bio/Tools/Phylo/Gerp.pm cp lib/Bio/Tools/GFF.pm blib/lib/Bio/Tools/GFF.pm cp lib/Bio/Tools/Fgenesh.pm blib/lib/Bio/Tools/Fgenesh.pm cp lib/Bio/Tools/ECnumber.pm blib/lib/Bio/Tools/ECnumber.pm cp lib/Bio/Tree/RandomFactory.pm blib/lib/Bio/Tree/RandomFactory.pm cp lib/Bio/Tools/SeqStats.pm blib/lib/Bio/Tools/SeqStats.pm cp lib/Bio/Tools/Run/Analysis.pm blib/lib/Bio/Tools/Run/Analysis.pm cp lib/Bio/Tools/SeqWords.pm blib/lib/Bio/Tools/SeqWords.pm cp lib/Bio/Tools/Sigcleave.pm blib/lib/Bio/Tools/Sigcleave.pm cp lib/Bio/Tree/AnnotatableNode.pm blib/lib/Bio/Tree/AnnotatableNode.pm cp lib/Bio/Tree/Compatible.pm blib/lib/Bio/Tree/Compatible.pm cp lib/Bio/Tree/NodeNHX.pm blib/lib/Bio/Tree/NodeNHX.pm cp lib/Bio/Tools/Sim4/Exon.pm blib/lib/Bio/Tools/Sim4/Exon.pm cp lib/Bio/Tree/Node.pm blib/lib/Bio/Tree/Node.pm cp lib/Bio/Tools/TandemRepeatsFinder.pm blib/lib/Bio/Tools/TandemRepeatsFinder.pm cp lib/Bio/Tools/SeqPattern/Backtranslate.pm blib/lib/Bio/Tools/SeqPattern/Backtranslate.pm cp lib/Bio/Tools/SeqPattern.pm blib/lib/Bio/Tools/SeqPattern.pm cp lib/Bio/Tools/TargetP.pm blib/lib/Bio/Tools/TargetP.pm cp lib/Bio/Tools/Run/AnalysisFactory.pm blib/lib/Bio/Tools/Run/AnalysisFactory.pm cp lib/Bio/Tools/Spidey/Exon.pm blib/lib/Bio/Tools/Spidey/Exon.pm cp lib/Bio/Tools/QRNA.pm blib/lib/Bio/Tools/QRNA.pm cp lib/Bio/Tools/RepeatMasker.pm blib/lib/Bio/Tools/RepeatMasker.pm cp lib/Bio/Tools/pICalculator.pm blib/lib/Bio/Tools/pICalculator.pm cp lib/Bio/Tools/Seg.pm blib/lib/Bio/Tools/Seg.pm cp lib/Bio/Tools/Run/WrapperBase/CommandExts.pm blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm cp lib/Bio/Tools/Run/WrapperBase.pm blib/lib/Bio/Tools/Run/WrapperBase.pm cp lib/Bio/Tree/Tree.pm blib/lib/Bio/Tree/Tree.pm cp lib/Bio/Tree/NodeI.pm blib/lib/Bio/Tree/NodeI.pm cp lib/Bio/Tools/Signalp/ExtendedSignalp.pm blib/lib/Bio/Tools/Signalp/ExtendedSignalp.pm cp lib/Bio/Tools/tRNAscanSE.pm blib/lib/Bio/Tools/tRNAscanSE.pm cp lib/Bio/Tools/Run/ParametersI.pm blib/lib/Bio/Tools/Run/ParametersI.pm cp lib/Bio/Tools/Sim4/Results.pm blib/lib/Bio/Tools/Sim4/Results.pm cp lib/Bio/Tools/isPcr.pm blib/lib/Bio/Tools/isPcr.pm cp lib/Bio/Tools/Tmhmm.pm blib/lib/Bio/Tools/Tmhmm.pm cp lib/Bio/Tools/Run/Phylo/PhyloBase.pm blib/lib/Bio/Tools/Run/Phylo/PhyloBase.pm cp lib/Bio/Tree/Statistics.pm blib/lib/Bio/Tree/Statistics.pm cp lib/Bio/Tree/DistanceFactory.pm blib/lib/Bio/Tree/DistanceFactory.pm cp lib/Bio/Tools/Spidey/Results.pm blib/lib/Bio/Tools/Spidey/Results.pm cp lib/Bio/Tools/Signalp.pm blib/lib/Bio/Tools/Signalp.pm cp lib/Bio/Tools/ipcress.pm blib/lib/Bio/Tools/ipcress.pm cp lib/Bio/Tools/RandomDistFunctions.pm blib/lib/Bio/Tools/RandomDistFunctions.pm cp lib/Bio/Tools/Run/GenericParameters.pm blib/lib/Bio/Tools/Run/GenericParameters.pm cp lib/BioPerl.pm blib/lib/BioPerl.pm cp lib/Bio/UpdateableSeqI.pm blib/lib/Bio/UpdateableSeqI.pm cp lib/Bio/TreeIO/TreeEventBuilder.pm blib/lib/Bio/TreeIO/TreeEventBuilder.pm cp lib/Bio/TreeIO/newick.pm blib/lib/Bio/TreeIO/newick.pm cp lib/Bio/TreeIO/cluster.pm blib/lib/Bio/TreeIO/cluster.pm cp lib/Bio/TreeIO/phyloxml.pm blib/lib/Bio/TreeIO/phyloxml.pm cp lib/Bio/TreeIO/tabtree.pm blib/lib/Bio/TreeIO/tabtree.pm cp lib/Bio/TreeIO/nexus.pm blib/lib/Bio/TreeIO/nexus.pm cp lib/Bio/TreeIO/nhx.pm blib/lib/Bio/TreeIO/nhx.pm cp lib/Bio/WebAgent.pm blib/lib/Bio/WebAgent.pm cp lib/Bio/TreeIO/NewickParser.pm blib/lib/Bio/TreeIO/NewickParser.pm cp lib/Bio/Tree/TreeI.pm blib/lib/Bio/Tree/TreeI.pm cp lib/Bio/Tree/TreeFunctionsI.pm blib/lib/Bio/Tree/TreeFunctionsI.pm cp lib/Bio/TreeIO/lintree.pm blib/lib/Bio/TreeIO/lintree.pm cp lib/Bio/TreeIO.pm blib/lib/Bio/TreeIO.pm cp lib/Bio/TreeIO/pag.pm blib/lib/Bio/TreeIO/pag.pm cp bin/bp_aacomp blib/script/bp_aacomp cp bin/bp_bioflat_index blib/script/bp_bioflat_index "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_aacomp "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_bioflat_index cp bin/bp_biogetseq blib/script/bp_biogetseq cp bin/bp_dbsplit blib/script/bp_dbsplit cp bin/bp_extract_feature_seq blib/script/bp_extract_feature_seq cp bin/bp_fastam9_to_table blib/script/bp_fastam9_to_table "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biogetseq "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_dbsplit "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_extract_feature_seq "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fastam9_to_table cp bin/bp_fetch blib/script/bp_fetch "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fetch cp bin/bp_filter_search blib/script/bp_filter_search cp bin/bp_find-blast-matches blib/script/bp_find-blast-matches "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_filter_search "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_find-blast-matches cp bin/bp_gccalc blib/script/bp_gccalc cp bin/bp_genbank2gff3 blib/script/bp_genbank2gff3 cp bin/bp_index blib/script/bp_index "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_gccalc "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff3 "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_index cp bin/bp_local_taxonomydb_query blib/script/bp_local_taxonomydb_query "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_local_taxonomydb_query cp bin/bp_make_mrna_protein blib/script/bp_make_mrna_protein cp bin/bp_mask_by_search blib/script/bp_mask_by_search "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_make_mrna_protein "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_mask_by_search cp bin/bp_mrtrans blib/script/bp_mrtrans cp bin/bp_mutate blib/script/bp_mutate "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_mrtrans cp bin/bp_nexus2nh blib/script/bp_nexus2nh "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_mutate "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_nexus2nh cp bin/bp_nrdb blib/script/bp_nrdb cp bin/bp_oligo_count blib/script/bp_oligo_count "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_nrdb "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_oligo_count cp bin/bp_process_gadfly blib/script/bp_process_gadfly cp bin/bp_process_sgd blib/script/bp_process_sgd "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_process_gadfly "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_process_sgd cp bin/bp_revtrans-motif blib/script/bp_revtrans-motif "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_revtrans-motif cp bin/bp_search2alnblocks blib/script/bp_search2alnblocks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2alnblocks cp bin/bp_search2gff blib/script/bp_search2gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2gff cp bin/bp_search2table blib/script/bp_search2table "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2table cp bin/bp_search2tribe blib/script/bp_search2tribe cp bin/bp_seq_length blib/script/bp_seq_length "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2tribe "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seq_length cp bin/bp_seqconvert blib/script/bp_seqconvert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqconvert cp bin/bp_seqcut blib/script/bp_seqcut "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqcut cp bin/bp_seqpart blib/script/bp_seqpart "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqpart cp bin/bp_seqret blib/script/bp_seqret cp bin/bp_seqretsplit blib/script/bp_seqretsplit "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqretsplit "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqret cp bin/bp_split_seq blib/script/bp_split_seq "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_split_seq cp bin/bp_sreformat blib/script/bp_sreformat cp bin/bp_taxid4species blib/script/bp_taxid4species "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_sreformat "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_taxid4species cp bin/bp_taxonomy2tree blib/script/bp_taxonomy2tree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_taxonomy2tree cp bin/bp_translate_seq blib/script/bp_translate_seq "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_translate_seq cp bin/bp_tree2pag blib/script/bp_tree2pag "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_tree2pag cp bin/bp_unflatten_seq blib/script/bp_unflatten_seq "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_unflatten_seq Manifying 40 pod documents Manifying 35 pod documents Manifying 33 pod documents Manifying 32 pod documents Manifying 34 pod documents Manifying 32 pod documents Manifying 32 pod documents Manifying 30 pod documents Manifying 27 pod documents Manifying 35 pod documents Manifying 29 pod documents Manifying 35 pod documents Manifying 36 pod documents Manifying 33 pod documents Manifying 33 pod documents Manifying 15 pod documents make[1]: Leaving directory '/build/reproducible-path/bioperl-1.7.8' dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j40 install DESTDIR=/build/reproducible-path/bioperl-1.7.8/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/bioperl-1.7.8' Manifying 40 pod documents Manifying 35 pod documents Manifying 33 pod documents Manifying 32 pod documents Manifying 34 pod documents Manifying 32 pod documents Manifying 32 pod documents Manifying 30 pod documents Manifying 27 pod documents Manifying 35 pod documents Manifying 29 pod documents Manifying 35 pod documents Manifying 36 pod documents Manifying 33 pod documents Manifying 33 pod documents Manifying 15 pod documents Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/BioPerl.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AnalysisParserI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/PrimarySeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/PrimarySeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/LocatableSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AnnotationCollectionI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqAnalysisParserI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DBLinkContainerI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqUtils.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/IdentifiableI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DasI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/PullParserI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AnnotatableI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/HandlerBaseI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AnalysisResultI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Range.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/WebAgent.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/IdCollectionI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Species.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/ParameterBaseI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Taxon.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AnnotationI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/RangeI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SimpleAlign.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/UpdateableSeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DescribableI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/LocationI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SimpleAnalysisI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AnalysisI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeatureI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/FeatureHolderI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Registry.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/QueryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/SeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/ReferenceI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/WebDBSeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Taxonomy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/IndexedBase.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/RandomAccessI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Qual.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/InMemoryCache.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/DBFetch.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/GenericWebAgent.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/UpdateableSeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/LocationI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Failover.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/FileCache.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Taxonomy/list.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Taxonomy/flatfile.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Taxonomy/silva.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Taxonomy/greengenes.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat/BDB.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat/BinarySearch.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat/BDB/embl.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat/BDB/swiss.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat/BDB/fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Flat/BDB/genbank.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/GFF/Util/Binning.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/GFF/Util/Rearrange.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/DB/Query/WebQuery.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/proda.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/clustalw.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/selex.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/maf.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/xmfa.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/mega.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/pfam.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/meme.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/largemultifasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/arp.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/phylip.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/po.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/prodom.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/msf.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/emboss.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/psi.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/mase.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/bl2seq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/metafasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/nexus.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/AlignIO/Handler/GenericAlignHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/Fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/EMBL.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/AbstractSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/Swissprot.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/Blast.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/SwissPfam.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/Abstract.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/Qual.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/GenBank.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/Fastq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Index/BlastTable.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Event/EventHandlerI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Event/EventGeneratorI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/RandomFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/TreeFunctionsI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/Statistics.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/Compatible.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/AnnotatableNode.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/DistanceFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/NodeNHX.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/NodeI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/Node.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/Tree.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tree/TreeI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Align/PairwiseStatistics.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Align/Utilities.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Align/DNAStatistics.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Align/AlignI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Align/ProteinStatistics.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Align/StatisticsI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PhylipDist.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/Scoring.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/Mlagan.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/IO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/Generic.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/MatrixI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/IO/scoring.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/IO/phylip.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/IO/mlagan.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/PsmHeader.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/Psm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/IO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/SiteMatrixI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/InstanceSite.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/SiteMatrix.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/InstanceSiteI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/PsmI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/ProtMatrix.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/ProtPsm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/PsmHeaderI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/IO/mast.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/IO/masta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/IO/meme.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/IO/transfac.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Matrix/PSM/IO/psiblast.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/raw.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/ace.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/embl.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/game.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/scf.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/tab.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/msout.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/asciitree.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/fastq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/bsml_sax.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/pir.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/kegg.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/gbdriver.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/gbxml.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/tigrxml.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/locuslink.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/tigr.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/swissdriver.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/FTHelper.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/mbsout.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/table.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/largefasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/swiss.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/bsml.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/seqxml.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/metafasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/tinyseq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/phd.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/gcg.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/genbank.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/embldriver.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/qual.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/MultiFile.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/Handler/GenericRichSeqHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/tinyseq/tinyseqHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/game/featHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/game/gameHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/game/seqHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/game/gameSubs.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqIO/game/gameWriter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Das/FeatureTypeI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Das/SegmentI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/CodonUsage/Table.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/CodonUsage/IO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/BlastStatistics.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/BlastUtils.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/GenericDatabase.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Processor.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/StatisticsI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/DatabaseI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/SearchUtils.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/GenericStatistics.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/BlastResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/ResultI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/CrossMatchResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/WABAResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/BlastPullResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/PullResultI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/GenericResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/INFERNALResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Result/ResultFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Iteration/GenericIteration.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Iteration/IterationI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/PSLHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/PullHSPI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/FastaHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/BlastHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/HSPFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/PsiBlastHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/GenericHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/HSPI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/WABAHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/ModelHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/HSP/BlastPullHSP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/GenericHit.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/Fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/PullHitI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/BlastHit.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/HitFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/HitI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/ModelHit.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/PsiBlastHit.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Hit/BlastPullHit.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Tiling/MapTiling.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Tiling/MapTileUtils.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Search/Tiling/TilingI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/TreeEventBuilder.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/pag.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/newick.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/lintree.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/tabtree.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/cluster.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/NewickParser.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/phyloxml.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/nhx.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/TreeIO/nexus.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/RandomDistFunctions.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Genewise.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/ESTScan.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Glimmer.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/EPCR.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Prints.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/FootPrinter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/pICalculator.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/AnalysisResult.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Promoterwise.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/GuessSeqFormat.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/ECnumber.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/IUPAC.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Signalp.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/TargetP.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/AmpliconSearch.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/SeqWords.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/ipcress.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/SeqStats.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/CodonTable.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/SeqPattern.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Primer3.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/GFF.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Blat.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Lucy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Est2Genome.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/OddCodes.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Sigcleave.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/QRNA.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Grail.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Match.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/RepeatMasker.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Geneid.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Profile.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Seg.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/tRNAscanSE.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/isPcr.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/TandemRepeatsFinder.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Genemark.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Genscan.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Genomewise.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/MZEF.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Eponine.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Fgenesh.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Coil.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Tmhmm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Pseudowise.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/PrositeScan.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/SeqPattern/Backtranslate.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Signalp/ExtendedSignalp.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/EMBOSS/Palindrome.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Spidey/Results.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Spidey/Exon.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/ParametersI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/Analysis.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/WrapperBase.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/AnalysisFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/GenericParameters.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/Phylo/PhyloBase.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Run/WrapperBase/CommandExts.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Prediction/Exon.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Prediction/Gene.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Primer/Feature.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Primer/AssessorI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Primer/Pair.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Primer/Assessor/Base.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Sim4/Results.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Sim4/Exon.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Phylo/Gerp.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Phylo/Molphy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Phylo/Molphy/Result.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Phylo/Phylip/ProtDist.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Alignment/Trim.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Alignment/Consed.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Tools/Analysis/SimpleAnalysisBase.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/NarrowestCoordPolicy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/Fuzzy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/AvWithinCoordPolicy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/SplitLocationI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/WidestCoordPolicy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/Atomic.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/CoordinatePolicyI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/Split.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/Simple.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Location/FuzzyLocationI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/AnnotationAdaptor.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/TypedSeqFeatureI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Amplicon.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Collection.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/PositionProxy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/FeaturePair.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/SimilarityPair.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/SubSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/CollectionI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Generic.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Primer.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Similarity.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Computation.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Lite.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/Poly_A_site.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/Promoter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/ExonI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/NC_Feature.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/TranscriptI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/Exon.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/Intron.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/GeneStructure.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/Transcript.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/GeneStructureI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Gene/UTR.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Tools/FeatureNamer.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Tools/Unflattener.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Tools/TypeMapper.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SeqFeature/Tools/IDHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/OntologyI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/RelationshipI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/Ontology.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/RelationshipFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/SimpleOntologyEngine.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/GOterm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/PathI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/Path.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/DocumentRegistry.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/Relationship.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/RelationshipType.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/OntologyEngineI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/TermI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/OBOEngine.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/TermFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/Term.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/OBOterm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/OntologyStore.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/InterProTerm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/ObjectFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/ObjectBuilderI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/LocationFactoryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/SequenceFactoryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/ObjectFactoryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/DriverFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/SeqAnalysisParserFactoryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/SeqAnalysisParserFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/FTLocationFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/SequenceProcessorI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/SequenceStreamI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/TreeFactoryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/ApplicationFactoryI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Factory/AnalysisI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/LargeSeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/LargeLocatableSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/LargePrimarySeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/SeqFastaSpeedFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/PrimedSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/QualI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/Quality.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/EncodedSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/RichSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/SequenceTrace.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/BaseSeqProcessor.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/TraceI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/RichSeqI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/PrimaryQual.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/SimulatedRead.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/SeqFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/Meta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/SeqBuilder.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/LargeSeq.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/MetaI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Seq/Meta/Array.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/SearchWriterI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/blast_pull.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/IteratedSearchResultEventBuilder.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/blast.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/EventHandlerI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/erpin.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/axt.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/gmap_f9.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/blasttable.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/waba.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/FastHitEventBuilder.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/exonerate.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/wise.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/rnamotif.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/psl.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/cross_match.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/infernal.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/fasta.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/megablast.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/sim4.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/Writer/GbrowseGFF.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/Writer/HitTableWriter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/Writer/HTMLResultWriter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/Writer/HSPTableWriter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/Writer/TextResultWriter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/SearchIO/Writer/ResultTableWriter.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/TestObject.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/Utilities.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/Storable.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/Test.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/Exception.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/Root.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/IO.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/Version.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/RootI.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Root/HTTPget.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/simplehierarchy.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/goflat.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/soflat.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/obo.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/InterProParser.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/dagflat.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/Handlers/InterProHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/OntologyIO/Handlers/BaseSAXHandler.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/TagTree.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/DBLink.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/Collection.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/SimpleValue.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/Comment.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/Reference.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/AnnotationFactory.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/Target.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/TypeManager.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/Tree.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/Relation.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/StructuredValue.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/perl5/Bio/Annotation/OntologyTerm.pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_search2tribe.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_mrtrans.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_filter_search.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_fastam9_to_table.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_index.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_dbsplit.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_split_seq.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_biogetseq.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_seqcut.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_search2table.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_seq_length.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_revtrans-motif.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_genbank2gff3.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_seqret.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_mask_by_search.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_sreformat.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_search2gff.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_oligo_count.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_translate_seq.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_taxid4species.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_extract_feature_seq.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_unflatten_seq.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_process_gadfly.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_bioflat_index.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_seqconvert.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_gccalc.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_fetch.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_mutate.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_nexus2nh.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_tree2pag.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_seqpart.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_local_taxonomydb_query.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_search2alnblocks.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_aacomp.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_nrdb.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_seqretsplit.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_process_sgd.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_taxonomy2tree.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_make_mrna_protein.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man1/bp_find-blast-matches.1p Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::RandomDistFunctions.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::SeqI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::PSM::IO.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Hit::BlastPullHit.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::PrositeScan.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AlignIO::meme.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Event::EventHandlerI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Gene::ExonI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::Reference.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Ontology::RelationshipFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Index::SwissPfam.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Location::NarrowestCoordPolicy.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Primer::Pair.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Spidey::Results.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::SearchResultEventBuilder.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AnalysisResultI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::Fasta.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::Writer::TextResultWriter.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::exonerate.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Ontology::OBOEngine.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::ParameterBaseI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::ReferenceI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::SearchWriterI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::DistanceFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Computation.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqUtils.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Root::IO.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Profile.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::UpdateableSeqI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::Node.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::Generic.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Hit::BlastHit.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::HSP::PSLHSP.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::HSP::ModelHSP.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::PrimedSeq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Genemark.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Factory::FTLocationFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::DBLink.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AnalysisI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::Meta::Array.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AlignIO::mega.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AnnotationCollectionI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::TreeI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::Taxonomy::silva.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::TypedSeqFeatureI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Root::Version.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::seqxml.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Gene::Poly_A_site.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Primer.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::axt.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Range.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AlignIO::arp.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Hit::Fasta.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::PSM::PsmHeader.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::Query::WebQuery.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeatureI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::WebDBSeqI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::PrimaryQual.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SimpleAlign.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::game::featHandler.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::Compatible.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::asciitree.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Run::GenericParameters.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AlignIO::xmfa.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AlignIO::selex.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::PositionProxy.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Result::PullResultI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Match.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::Scoring.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::FeatureHolderI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Index::Fastq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::NodeI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::TreeIO.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::LargeLocatableSeq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::psl.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::tinyseq::tinyseqHandler.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::SubSeq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::genbank.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::game::seqHandler.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Root::HTTPget.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Tiling::TilingI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::EventHandlerI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Location::CoordinatePolicyI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Event::EventGeneratorI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Alignment::Trim.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::PullParserI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::infernal.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::GenericDatabase.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::Meta.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DescribableI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::Collection.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Align::ProteinStatistics.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Align::DNAStatistics.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::ace.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Ontology::TermI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::wise.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::game::gameWriter.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/BioPerl.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Factory::AnalysisI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Align::AlignI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Root::Root.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Amplicon.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Collection.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::SearchUtils.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Factory::SequenceProcessorI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::Comment.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::FastHitEventBuilder.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::PSM::Psm.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::PSM::IO::meme.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::qual.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::PSM::ProtMatrix.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::AmpliconSearch.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Result::BlastPullResult.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::RandomFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::AlignIO::bl2seq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Primer::Assessor::Base.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Root::Storable.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tree::TreeFunctionsI.3pm Installing 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/build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::fasta.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Est2Genome.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Gene::GeneStructureI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::blast_pull.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DasI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::blast.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Factory::SeqAnalysisParserFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::Target.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Hit::PullHitI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Generic.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::TreeIO::phyloxml.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Tools::IDHandler.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Index::AbstractSeq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::OntologyTerm.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Fgenesh.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Gene::UTR.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::EncodedSeq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::IO.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::TreeIO::pag.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::OddCodes.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::HSP::HSPFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::WebAgent.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::Writer::HitTableWriter.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::PSM::ProtPsm.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::IdentifiableI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::QueryI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::Result::WABAResult.3pm Installing 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/build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SearchIO::IteratedSearchResultEventBuilder.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Phylo::Phylip::ProtDist.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::IUPAC.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::Tools::TypeMapper.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::DB::Taxonomy::flatfile.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Index::Blast.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Annotation::AnnotationFactory.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::tigrxml.3pm Installing 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Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Primer::AssessorI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::TreeIO::nhx.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::IO::mlagan.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Ontology::OntologyEngineI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Genomewise.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::Alignment::Consed.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Location::Simple.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Tools::tRNAscanSE.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Seq::RichSeqI.3pm Installing 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/build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Search::GenericStatistics.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Ontology::PathI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::mbsout.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::IO::phylip.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Matrix::MatrixI.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqFeature::SimilarityPair.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Root::Utilities.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::SeqIO::fastq.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::Location::Split.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/share/man/man3/Bio::TreeIO::lintree.3pm Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_search2table Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_index Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_split_seq Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_seqcut Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_revtrans-motif Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_tree2pag Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_seq_length Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_taxid4species Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_mutate Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_process_gadfly Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_seqpart Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_mrtrans Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_genbank2gff3 Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_bioflat_index Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_aacomp Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_fetch Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_fastam9_to_table Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_seqretsplit Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_extract_feature_seq Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_find-blast-matches Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_local_taxonomydb_query Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_gccalc Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_dbsplit Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_process_sgd Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_seqconvert Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_oligo_count Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_make_mrna_protein Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_mask_by_search Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_biogetseq Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_search2gff Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_search2alnblocks Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_filter_search Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_taxonomy2tree Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_sreformat Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_search2tribe Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_translate_seq Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_nexus2nh Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_seqret Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_unflatten_seq Installing /build/reproducible-path/bioperl-1.7.8/debian/tmp/usr/bin/bp_nrdb make[1]: Leaving directory '/build/reproducible-path/bioperl-1.7.8' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/bioperl-1.7.8' dh_installexamples examples/* for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done for pl in `grep -Rl '#![[:space:]]*/usr/local/bin/perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/local/bin/[[:space:]]*perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/bioperl-1.7.8' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bioperl' in '../bioperl_1.7.8-2_all.deb'. dpkg-deb: building package 'libbio-perl-perl' in '../libbio-perl-perl_1.7.8-2_all.deb'. dpkg-genbuildinfo --build=binary -O../bioperl_1.7.8-2_amd64.buildinfo dpkg-genchanges --build=binary -O../bioperl_1.7.8-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2166382/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2166382 and its subdirectories I: Current time: Fri Nov 28 05:58:28 +14 2025 I: pbuilder-time-stamp: 1764259108