I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 3 09:50:09 +14 2026 I: pbuilder-time-stamp: 1767383409 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-scran_1.34.0+dfsg-1.dsc] I: copying [./r-bioc-scran_1.34.0+dfsg.orig.tar.xz] I: copying [./r-bioc-scran_1.34.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 29 13:33:53 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-scran_1.34.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-scran in r-bioc-scran-1.34.0+dfsg dpkg-source: info: unpacking r-bioc-scran_1.34.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-scran_1.34.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_on_i386.patch dpkg-source: info: applying i386 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/667888/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 2 19:50 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/667888/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/667888/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=1098c5e128634e568058828cf6e0eb96 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=667888 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XTW6uG1N/pbuilderrc_veEb --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XTW6uG1N/b2 --logfile b2/build.log r-bioc-scran_1.34.0+dfsg-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/667888/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-bioc-scuttle, r-bioc-summarizedexperiment, r-bioc-s4vectors, r-bioc-biocgenerics, r-bioc-biocparallel, r-cran-rcpp, r-cran-matrix, r-bioc-edger, r-bioc-limma, r-cran-igraph, r-cran-statmod, r-bioc-matrixgenerics, r-bioc-s4arrays, r-bioc-delayedarray, r-bioc-biocsingular, r-bioc-bluster, r-bioc-metapod, r-cran-dqrng, r-bioc-beachmat, r-cran-bh, libpcg-cpp-dev, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment; however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-scuttle; however: Package r-bioc-scuttle is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-edger; however: Package r-bioc-edger is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma; however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-cran-igraph; however: Package r-cran-igraph is not installed. pbuilder-satisfydepends-dummy depends on r-cran-statmod; however: Package r-cran-statmod is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-matrixgenerics; however: Package r-bioc-matrixgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4arrays; however: Package r-bioc-s4arrays is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray; however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocsingular; however: Package r-bioc-biocsingular is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bluster; however: Package r-bioc-bluster is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-metapod; however: Package r-bioc-metapod is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dqrng; however: Package r-cran-dqrng is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-beachmat; however: Package r-bioc-beachmat is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. pbuilder-satisfydepends-dummy depends on libpcg-cpp-dev; however: Package libpcg-cpp-dev is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libamd3{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcg-cpp-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsuitesparseconfig7{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocneighbors{a} r-bioc-biocparallel{a} r-bioc-biocsingular{a} r-bioc-bluster{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-edger{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-metapod{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-scaledmatrix{a} r-bioc-scuttle{a} r-bioc-singlecellexperiment{a} r-bioc-sparsearray{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-cli{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dqrng{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-glue{a} r-cran-httr{a} r-cran-igraph{a} r-cran-irlba{a} r-cran-jsonlite{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rcpphnsw{a} r-cran-rlang{a} r-cran-rsvd{a} r-cran-sitmo{a} r-cran-snow{a} r-cran-statmod{a} r-cran-sys{a} r-cran-vctrs{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-graph r-cran-ape r-cran-base64enc r-cran-bench r-cran-bit64 r-cran-brio r-cran-callr r-cran-covr r-cran-dbi r-cran-decor r-cran-desc r-cran-digest r-cran-dplyr r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mvtnorm r-cran-pillar r-cran-pkgdown r-cran-plyr r-cran-png r-cran-processx r-cran-progress r-cran-ps r-cran-r.devices r-cran-r.rsp r-cran-readr r-cran-rgl r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-sf r-cran-shiny r-cran-sodium r-cran-spelling r-cran-survival r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-webutils r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 263 newly installed, 0 to remove and 0 not upgraded. Need to get 176 MB of archives. After unpacking 603 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 17 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 29 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 41 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-1 [23.5 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 66 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-9 [361 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libgfortran-14-dev arm64 14.2.0-9 [427 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-9 [9793 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 gfortran-14 arm64 14.2.0-9 [12.8 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 112 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 113 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.44-4 [230 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.44-4 [220 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.44-4 [60.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.44-4 [704 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 138 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 162 http://deb.debian.org/debian unstable/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 163 http://deb.debian.org/debian unstable/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 167 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 172 http://deb.debian.org/debian unstable/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 dh-r all 20231212 [42.2 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-2 [23.7 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libamd3 arm64 1:7.8.3+dfsg-2 [38.1 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-3.2+b2 [10.6 MB] Get: 190 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 191 http://deb.debian.org/debian unstable/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-2 [31.5 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libglpk40 arm64 5.0-1+b2 [346 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libpcg-cpp-dev all 0.98.1-2 [21.3 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 r-cran-littler arm64 0.3.20-1+b1 [103 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 r-bioc-iranges arm64 2.38.1-1 [2302 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 r-bioc-s4arrays arm64 1.4.1+dfsg-1 [523 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 208 http://deb.debian.org/debian unstable/main arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 r-bioc-sparsearray arm64 1.4.8+dfsg-1 [1247 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 r-bioc-delayedarray arm64 0.30.1+dfsg-1 [1847 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpp arm64 1.0.13-1-1 [2057 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 r-bioc-beachmat arm64 2.20.0+ds-1 [1317 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 r-bioc-biobase arm64 2.64.0-4 [2132 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 r-cran-formatr all 1.14-2 [152 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 222 http://deb.debian.org/debian unstable/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocparallel arm64 1.38.0-2 [1321 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpphnsw arm64 0.5.0+ds-1+b1 [157 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocneighbors arm64 1.22.0+ds-1 [582 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 r-bioc-scaledmatrix all 1.12.0+dfsg-1 [325 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 r-cran-irlba arm64 2.3.5.1-4+b1 [296 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 r-cran-rsvd all 1.0.5-1 [3589 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocsingular arm64 1.20.0+ds-1 [345 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 r-cran-cluster arm64 2.1.6-1+b1 [580 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 r-cran-glue arm64 1.7.0-1+b1 [159 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 r-cran-rlang arm64 1.1.4-1+b1 [1708 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 r-cran-igraph arm64 2.0.3-1+b1 [4979 kB] Get: 239 http://deb.debian.org/debian unstable/main arm64 r-bioc-bluster arm64 1.14.0+dfsg-1 [547 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 r-bioc-sparsematrixstats arm64 1.16.0+dfsg-1 [904 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 r-bioc-delayedmatrixstats all 1.26.0+ds-1 [487 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 r-bioc-edger arm64 4.2.2+dfsg-1 [1165 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 r-cran-mime arm64 0.12-2+b1 [36.1 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 r-cran-openssl arm64 2.2.0+dfsg-1+b1 [399 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 253 http://deb.debian.org/debian unstable/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 254 http://deb.debian.org/debian unstable/main arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 255 http://deb.debian.org/debian unstable/main arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 256 http://deb.debian.org/debian unstable/main arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 r-bioc-genomicranges arm64 1.56.2+dfsg-1 [1843 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 r-bioc-metapod arm64 1.12.0+dfsg-1 [205 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 r-bioc-singlecellexperiment all 1.26.0+ds-1 [831 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 r-bioc-scuttle arm64 1.14.0+dfsg-1 [430 kB] Get: 262 http://deb.debian.org/debian unstable/main arm64 r-cran-sitmo arm64 2.0.2-1+b2 [128 kB] Get: 263 http://deb.debian.org/debian unstable/main arm64 r-cran-dqrng arm64 0.3.2+dfsg-1+b1 [128 kB] Fetched 176 MB in 1s (121 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../015-architecture-properties_0.2.3_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.3) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../021-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../027-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../028-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../030-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../031-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zip. Preparing to unpack .../036-zip_3.0-14+b1_arm64.deb ... Unpacking zip (3.0-14+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../037-unzip_6.0-28+b1_arm64.deb ... Unpacking unzip (6.0-28+b1) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../038-libpaper1_1.1.29+b2_arm64.deb ... Unpacking libpaper1:arm64 (1.1.29+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../039-libpaper-utils_1.1.29+b2_arm64.deb ... Unpacking libpaper-utils (1.1.29+b2) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../040-xdg-utils_1.2.1-2_all.deb ... Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../041-libblas3_3.12.0-4_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-4) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../042-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../043-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../044-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../045-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.15.0-1.1+b1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../049-libfontconfig1_2.15.0-1.1+b1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1+b1) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../050-libpixman-1-0_0.44.0-3_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.44.0-3) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../051-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../052-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../053-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../054-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../055-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../056-libxcb-render0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../057-libxcb-shm0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../058-libxext6_2%3a1.3.4-1+b2_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1+b2_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../060-libcairo2_1.18.2-2_arm64.deb ... Unpacking libcairo2:arm64 (1.18.2-2) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../061-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../062-libcom-err2_1.47.2~rc1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2~rc1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../063-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../064-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../065-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../066-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../067-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../068-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../069-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../070-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../071-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../072-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../073-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../074-libcurl4t64_8.11.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../075-libdeflate0_1.22-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.22-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../076-libglib2.0-0t64_2.82.2-3_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.2-3) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../077-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../078-libgfortran5_14.2.0-9_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-9) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../079-liblapack3_3.12.0-4_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../080-fontconfig_2.15.0-1.1+b1_arm64.deb ... Unpacking fontconfig (2.15.0-1.1+b1) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../081-libfribidi0_1.0.15-1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.15-1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../082-libgraphite2-3_1.3.14-2+b1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2+b1) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../083-libharfbuzz0b_10.0.1-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../084-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../085-libdatrie1_0.2.13-3+b1_arm64.deb ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../091-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../092-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../099-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../100-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../101-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../102-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... 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Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-9) ... Selecting previously unselected package gfortran-14. Preparing to unpack .../109-gfortran-14_14.2.0-9_arm64.deb ... Unpacking gfortran-14 (14.2.0-9) ... Selecting previously unselected package gfortran-aarch64-linux-gnu. Preparing to unpack .../110-gfortran-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gfortran. Preparing to unpack .../111-gfortran_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran (4:14.2.0-1) ... Selecting previously unselected package libblas-dev:arm64. Preparing to unpack .../112-libblas-dev_3.12.0-4_arm64.deb ... Unpacking libblas-dev:arm64 (3.12.0-4) ... Selecting previously unselected package liblapack-dev:arm64. Preparing to unpack .../113-liblapack-dev_3.12.0-4_arm64.deb ... Unpacking liblapack-dev:arm64 (3.12.0-4) ... Selecting previously unselected package libncurses6:arm64. 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Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../120-libpcre2-32-0_10.44-4_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.44-4) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../121-libpcre2-posix3_10.44-4_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.44-4) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../122-libpcre2-dev_10.44-4_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.44-4) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../123-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpng-dev:arm64. Preparing to unpack .../124-libpng-dev_1.6.44-2_arm64.deb ... Unpacking libpng-dev:arm64 (1.6.44-2) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../125-libbz2-dev_1.0.8-6_arm64.deb ... 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Preparing to unpack .../149-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../150-libb-hooks-op-check-perl_0.22-3+b2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../151-libdynaloader-functions-perl_0.004-1_all.deb ... Unpacking libdynaloader-functions-perl (0.004-1) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../152-libdevel-callchecker-perl_0.009-1+b1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../153-libparams-classify-perl_0.015-2+b4_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b4) ... Selecting previously unselected package libmodule-runtime-perl. 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Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../175-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../176-libsub-identify-perl_0.14-3+b3_arm64.deb ... Unpacking libsub-identify-perl (0.14-3+b3) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../177-libsub-name-perl_0.27-1+b3_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.27-1+b3) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../178-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../179-libnghttp3-9_1.6.0-2_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:arm64. 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Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-9) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libamd3:arm64 (1:7.8.3+dfsg-2) ... Setting up libpcre2-dev:arm64 (10.44-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up libcolamd3:arm64 (1:7.8.3+dfsg-2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libglpk40:arm64 (5.0-1+b2) ... Setting up liblapack-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-9) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-9) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:arm64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up r-cran-formatr (1.14-2) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up r-cran-cluster (2.1.6-1+b1) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-magrittr (2.0.3-1+b1) ... Setting up r-bioc-genomeinfodbdata (1.2.12-1) ... Setting up r-cran-littler (0.3.20-1+b1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-curl (5.2.3+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-rlang (1.1.4-1+b1) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up littler (0.3.20-1) ... Setting up r-bioc-matrixgenerics (1.16.0-2) ... Setting up r-cran-rcpphnsw (0.5.0+ds-1+b1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-mime (0.12-2+b1) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.7.0-1+b1) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-sitmo (2.0.2-1+b2) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-irlba (2.3.5.1-4+b1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up r-cran-dqrng (0.3.2+dfsg-1+b1) ... Setting up r-bioc-metapod (1.12.0+dfsg-1) ... Setting up r-bioc-sparsematrixstats (1.16.0+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1+b1) ... Setting up r-cran-openssl (2.2.0+dfsg-1+b1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (4.2.2+dfsg-1) ... Setting up r-cran-igraph (2.0.3-1+b1) ... Setting up r-cran-rsvd (1.0.5-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up dh-r (20231212) ... Setting up r-bioc-biocneighbors (1.22.0+ds-1) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-bioc-bluster (1.14.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.56.2+dfsg-1) ... Setting up r-bioc-delayedmatrixstats (1.26.0+ds-1) ... Setting up r-bioc-beachmat (2.20.0+ds-1) ... Setting up r-bioc-scaledmatrix (1.12.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-biocsingular (1.20.0+ds-1) ... Setting up r-bioc-singlecellexperiment (1.26.0+ds-1) ... Setting up r-bioc-scuttle (1.14.0+dfsg-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/667888/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/667888/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-scran-1.34.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-scran_1.34.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-scran dpkg-buildpackage: info: source version 1.34.0+dfsg-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-scran/ -O--buildsystem=R I: R Package: scran Version: 1.34.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 29 Nov 2024 14:31:43 +0100 mkdir -p /build/reproducible-path/r-bioc-scran-1.34.0\+dfsg/debian/r-bioc-scran/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-scran-1.34.0\+dfsg/debian/r-bioc-scran/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 29 Nov 2024 14:31:43 +0100'" * installing *source* package 'scran' ... file 'inst/doc/scran.html' is missing files 'src/Makevars', 'tests/testthat/test-altrep.R' have the wrong MD5 checksums ** using staged installation ** libs using C++ compiler: 'g++ (Debian 14.2.0-9) 14.2.0' using C++11 make[1]: Entering directory '/build/reproducible-path/r-bioc-scran-1.34.0+dfsg/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c choose_effect_size.cpp -o choose_effect_size.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c combine_rho.cpp -o combine_rho.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c compute_blocked_stats.cpp -o compute_blocked_stats.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c compute_residual_stats.cpp -o compute_residual_stats.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c compute_rho_null.cpp -o compute_rho_null.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c cyclone_scores.cpp -o cyclone_scores.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c overlap_exprs.cpp -o overlap_exprs.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c rand_custom.cpp -o rand_custom.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o scran.so RcppExports.o choose_effect_size.o combine_rho.o compute_blocked_stats.o compute_residual_stats.o compute_rho_null.o cyclone_scores.o overlap_exprs.o rand_custom.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-scran-1.34.0+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-scran-1.34.0+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-scran-1.34.0+dfsg/src' installing to /build/reproducible-path/r-bioc-scran-1.34.0+dfsg/debian/r-bioc-scran/usr/lib/R/site-library/00LOCK-r-bioc-scran-1.34.0+dfsg/00new/scran/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scran) I: Using r-bioc-singlecellexperiment for Depends:SingleCellExperiment I: Using r-bioc-scuttle for Depends:scuttle I: Using r-cran-testthat for Suggests:testthat I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-delayedmatrixstats for Suggests:DelayedMatrixStats I: Using r-bioc-hdf5array for Suggests:HDF5Array I: Using r-bioc-scrnaseq for Suggests:scRNAseq I: Using r-cran-dynamictreecut for Suggests:dynamicTreeCut I: Using r-bioc-residualmatrix for Suggests:ResidualMatrix I: Using r-bioc-scaledmatrix for Suggests:ScaledMatrix I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-cran-pheatmap for Suggests:pheatmap I: Using r-bioc-scater for Suggests:scater I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-biocparallel for Imports:BiocParallel I: Using r-cran-rcpp for Imports:Rcpp I: Using r-cran-matrix by changing version to for Imports:Matrix I: Using r-bioc-edger for Imports:edgeR I: Using r-bioc-limma for Imports:limma I: Using r-cran-igraph for Imports:igraph I: Using r-cran-statmod for Imports:statmod I: Using r-bioc-matrixgenerics for Imports:MatrixGenerics I: Using r-bioc-s4arrays for Imports:S4Arrays I: Using r-bioc-delayedarray for Imports:DelayedArray I: Using r-bioc-biocsingular for Imports:BiocSingular I: Using r-bioc-bluster for Imports:bluster I: Using r-bioc-metapod for Imports:metapod I: Using r-cran-dqrng for Imports:dqrng I: Using r-bioc-beachmat for Imports:beachmat I: Using r-cran-rcpp for LinkingTo:Rcpp I: Using r-bioc-beachmat for LinkingTo:beachmat I: Using r-cran-bh for LinkingTo:BH I: Using r-cran-dqrng for LinkingTo:dqrng I: Using r-bioc-scuttle for LinkingTo:scuttle I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-scran as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-scran' in '../r-bioc-scran_1.34.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-scran-dbgsym' in '../r-bioc-scran-dbgsym_1.34.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-scran_1.34.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-scran_1.34.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/667888/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/667888/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/667888 and its subdirectories I: Current time: Sat Jan 3 09:54:25 +14 2026 I: pbuilder-time-stamp: 1767383665