I: pbuilder: network access will be disabled during build
I: Current time: Wed Apr 14 12:18:47 +14 2021
I: pbuilder-time-stamp: 1618352327
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [r-bioc-genomeinfodb_1.18.1-1.dsc]
I: copying [./r-bioc-genomeinfodb_1.18.1.orig.tar.gz]
I: copying [./r-bioc-genomeinfodb_1.18.1-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 19 03:37:59 2018 +14
gpgv:                using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv:                issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-genomeinfodb_1.18.1-1.dsc
dpkg-source: info: extracting r-bioc-genomeinfodb in r-bioc-genomeinfodb-1.18.1
dpkg-source: info: unpacking r-bioc-genomeinfodb_1.18.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-genomeinfodb_1.18.1-1.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/63151/tmp/hooks/D01_modify_environment starting
disorder-fs debug: Running on profitbricks-build6-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/63151/tmp/hooks/D01_modify_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.13.8), r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), libgdal-dev, r-cran-rcurl, r-bioc-genomeinfodbdata
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19231 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.13.8); however:
  Package r-bioc-biocgenerics is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.17.25); however:
  Package r-bioc-s4vectors is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.13.12); however:
  Package r-bioc-iranges is not installed.
 pbuilder-satisfydepends-dummy depends on libgdal-dev; however:
  Package libgdal-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-rcurl; however:
  Package r-cran-rcurl is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodbdata; however:
  Package r-bioc-genomeinfodbdata is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gdal-data{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarmadillo-dev{a} libarmadillo9{a} libarpack2{a} libarpack2-dev{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcharls-dev{a} libcharls2{a} libcroco3{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdap-dev{a} libdap25{a} libdapclient6v5{a} libdapserver7v5{a} libdatrie1{a} libelf1{a} libepsilon-dev{a} libepsilon1{a} libevent-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfreexl-dev{a} libfreexl1{a} libfribidi0{a} libfyba-dev{a} libfyba0{a} libgdal-dev{a} libgdal20{a} libgeos-3.7.1{a} libgeos-c1v5{a} libgeos-dev{a} libgeotiff-dev{a} libgeotiff2{a} libgfortran-8-dev{a} libgfortran5{a} libgif-dev{a} libgif7{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0{a} libgnutls-openssl27{a} libgnutls28-dev{a} libgnutlsxx28{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf4-0-alt{a} libhdf4-alt-dev{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libice6{a} libicu-dev{a} libicu63{a} libidn2-dev{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-c-dev{a} libjson-c3{a} libk5crypto3{a} libkeyutils1{a} libkml-dev{a} libkmlbase1{a} libkmlconvenience1{a} libkmldom1{a} libkmlengine1{a} libkmlregionator1{a} libkmlxsd1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmariadb-dev{a} libmariadb-dev-compat{a} libmariadb3{a} libminizip-dev{a} libminizip1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnetcdf-dev{a} libnetcdf13{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libodbc1{a} libogdi3.2{a} libogdi3.2-dev{a} libopenjp2-7{a} libopenjp2-7-dev{a} libp11-kit-dev{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpoppler-dev{a} libpoppler-private-dev{a} libpoppler82{a} libpopt0{a} libpq-dev{a} libpq5{a} libproj-dev{a} libproj13{a} libpsl5{a} libqhull-dev{a} libqhull-r7{a} libqhull7{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libspatialite-dev{a} libspatialite7{a} libsqlite3-dev{a} libssh2-1{a} libssl1.1{a} libsuperlu-dev{a} libsuperlu5{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff5{a} libtiffxx5{a} libtk8.6{a} libtool{a} libuchardet0{a} libunbound8{a} liburiparser-dev{a} liburiparser1{a} libwebp-dev{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libzstd-dev{a} lsb-base{a} m4{a} man-db{a} mariadb-common{a} mysql-common{a} nettle-dev{a} odbcinst{a} odbcinst1debian2{a} openssl{a} pkg-config{a} po-debconf{a} proj-data{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodbdata{a} r-bioc-iranges{a} r-bioc-s4vectors{a} r-cran-bitops{a} r-cran-rcurl{a} readline-common{a} sensible-utils{a} ucf{a} unixodbc-dev{a} unzip{a} uuid-dev{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lynx poppler-data proj-bin publicsuffix r-bioc-genomicranges r-bioc-xvector r-cran-runit r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 250 newly installed, 0 to remove and 0 not upgraded.
Need to get 168 MB of archives. After unpacking 627 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB]
Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB]
Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB]
Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB]
Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB]
Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB]
Get: 7 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB]
Get: 8 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB]
Get: 9 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB]
Get: 10 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB]
Get: 11 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB]
Get: 12 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB]
Get: 13 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB]
Get: 14 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB]
Get: 15 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB]
Get: 16 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB]
Get: 17 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB]
Get: 18 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB]
Get: 19 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB]
Get: 20 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u2 [1538 kB]
Get: 21 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u2 [853 kB]
Get: 22 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB]
Get: 23 http://deb.debian.org/debian buster/main i386 dctrl-tools i386 2.24-3 [105 kB]
Get: 24 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB]
Get: 25 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB]
Get: 26 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 27 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 28 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 29 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB]
Get: 30 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB]
Get: 31 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB]
Get: 32 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB]
Get: 33 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB]
Get: 34 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB]
Get: 35 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB]
Get: 36 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB]
Get: 37 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 38 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB]
Get: 39 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB]
Get: 40 http://deb.debian.org/debian buster/main i386 mysql-common all 5.8+1.0.5 [7324 B]
Get: 41 http://deb.debian.org/debian buster/main i386 mariadb-common all 1:10.3.22-0+deb10u1 [31.9 kB]
Get: 42 http://deb.debian.org/debian buster/main i386 libmariadb3 i386 1:10.3.22-0+deb10u1 [169 kB]
Get: 43 http://deb.debian.org/debian buster/main i386 libevent-2.1-6 i386 2.1.8-stable-4 [191 kB]
Get: 44 http://deb.debian.org/debian buster/main i386 libunbound8 i386 1.9.0-2+deb10u1 [492 kB]
Get: 45 http://deb.debian.org/debian buster/main i386 libgnutls-dane0 i386 3.6.7-4+deb10u2 [317 kB]
Get: 46 http://deb.debian.org/debian buster/main i386 libgnutls-openssl27 i386 3.6.7-4+deb10u2 [317 kB]
Get: 47 http://deb.debian.org/debian buster/main i386 libgnutlsxx28 i386 3.6.7-4+deb10u2 [15.6 kB]
Get: 48 http://deb.debian.org/debian buster/main i386 libidn2-dev i386 2.0.5-1+deb10u1 [80.4 kB]
Get: 49 http://deb.debian.org/debian buster/main i386 libp11-kit-dev i386 0.23.15-2 [195 kB]
Get: 50 http://deb.debian.org/debian buster/main i386 libtasn1-6-dev i386 4.13-3 [107 kB]
Get: 51 http://deb.debian.org/debian buster/main i386 libgmpxx4ldbl i386 2:6.1.2+dfsg-4 [23.2 kB]
Get: 52 http://deb.debian.org/debian buster/main i386 libgmp-dev i386 2:6.1.2+dfsg-4 [648 kB]
Get: 53 http://deb.debian.org/debian buster/main i386 nettle-dev i386 3.4.1-1 [1101 kB]
Get: 54 http://deb.debian.org/debian buster/main i386 libgnutls28-dev i386 3.6.7-4+deb10u2 [1147 kB]
Get: 55 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB]
Get: 56 http://deb.debian.org/debian buster/main i386 libmariadb-dev i386 1:10.3.22-0+deb10u1 [1011 kB]
Get: 57 http://deb.debian.org/debian buster/main i386 libmariadb-dev-compat i386 1:10.3.22-0+deb10u1 [31.0 kB]
Get: 58 http://deb.debian.org/debian buster/main i386 default-libmysqlclient-dev i386 1.0.5 [3764 B]
Get: 59 http://deb.debian.org/debian buster/main i386 zip i386 3.0-11+b1 [242 kB]
Get: 60 http://deb.debian.org/debian buster/main i386 unzip i386 6.0-23+deb10u1 [171 kB]
Get: 61 http://deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.28 [21.4 kB]
Get: 62 http://deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.28 [18.3 kB]
Get: 63 http://deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1 [73.3 kB]
Get: 64 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB]
Get: 65 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB]
Get: 66 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB]
Get: 67 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB]
Get: 68 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB]
Get: 69 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB]
Get: 70 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB]
Get: 71 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB]
Get: 72 http://deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB]
Get: 73 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB]
Get: 74 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 75 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB]
Get: 76 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB]
Get: 77 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB]
Get: 78 http://deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB]
Get: 79 http://deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB]
Get: 80 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB]
Get: 81 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB]
Get: 82 http://deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB]
Get: 83 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB]
Get: 84 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB]
Get: 85 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB]
Get: 86 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB]
Get: 87 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB]
Get: 88 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB]
Get: 89 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB]
Get: 90 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u1 [89.6 kB]
Get: 91 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u1 [236 kB]
Get: 92 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB]
Get: 93 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB]
Get: 94 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB]
Get: 95 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB]
Get: 96 http://deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4 [358 kB]
Get: 97 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB]
Get: 98 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB]
Get: 99 http://deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB]
Get: 100 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB]
Get: 101 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB]
Get: 102 http://deb.debian.org/debian buster/main i386 fontconfig i386 2.13.1-2 [405 kB]
Get: 103 http://deb.debian.org/debian buster/main i386 libfribidi0 i386 1.0.5-3.1+deb10u1 [64.3 kB]
Get: 104 http://deb.debian.org/debian buster/main i386 libthai-data all 0.1.28-2 [170 kB]
Get: 105 http://deb.debian.org/debian buster/main i386 libdatrie1 i386 0.2.12-2 [40.7 kB]
Get: 106 http://deb.debian.org/debian buster/main i386 libthai0 i386 0.1.28-2 [55.2 kB]
Get: 107 http://deb.debian.org/debian buster/main i386 libpango-1.0-0 i386 1.42.4-7~deb10u1 [191 kB]
Get: 108 http://deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB]
Get: 109 http://deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB]
Get: 110 http://deb.debian.org/debian buster/main i386 libpangoft2-1.0-0 i386 1.42.4-7~deb10u1 [71.0 kB]
Get: 111 http://deb.debian.org/debian buster/main i386 libpangocairo-1.0-0 i386 1.42.4-7~deb10u1 [57.1 kB]
Get: 112 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB]
Get: 113 http://deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get: 114 http://deb.debian.org/debian buster/main i386 libtcl8.6 i386 8.6.9+dfsg-2 [1065 kB]
Get: 115 http://deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB]
Get: 116 http://deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB]
Get: 117 http://deb.debian.org/debian buster/main i386 libtiff5 i386 4.1.0+git191117-2~deb10u1 [284 kB]
Get: 118 http://deb.debian.org/debian buster/main i386 libxft2 i386 2.3.2-2 [58.2 kB]
Get: 119 http://deb.debian.org/debian buster/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB]
Get: 120 http://deb.debian.org/debian buster/main i386 libtk8.6 i386 8.6.9-2 [809 kB]
Get: 121 http://deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB]
Get: 122 http://deb.debian.org/debian buster/main i386 r-base-core i386 3.5.2-1 [24.0 MB]
Get: 123 http://deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB]
Get: 124 http://deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB]
Get: 125 http://deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B]
Get: 126 http://deb.debian.org/debian buster/main i386 libblas-dev i386 3.8.0-2 [150 kB]
Get: 127 http://deb.debian.org/debian buster/main i386 liblapack-dev i386 3.8.0-2 [2035 kB]
Get: 128 http://deb.debian.org/debian buster/main i386 libncurses-dev i386 6.1+20181013-2+deb10u2 [360 kB]
Get: 129 http://deb.debian.org/debian buster/main i386 libncurses5-dev i386 6.1+20181013-2+deb10u2 [948 B]
Get: 130 http://deb.debian.org/debian buster/main i386 libreadline-dev i386 7.0-5 [146 kB]
Get: 131 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB]
Get: 132 http://deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get: 133 http://deb.debian.org/debian buster/main i386 libpcre16-3 i386 2:8.39-12 [258 kB]
Get: 134 http://deb.debian.org/debian buster/main i386 libpcre32-3 i386 2:8.39-12 [250 kB]
Get: 135 http://deb.debian.org/debian buster/main i386 libpcrecpp0v5 i386 2:8.39-12 [153 kB]
Get: 136 http://deb.debian.org/debian buster/main i386 libpcre3-dev i386 2:8.39-12 [656 kB]
Get: 137 http://deb.debian.org/debian buster/main i386 libpng-dev i386 1.6.36-6 [310 kB]
Get: 138 http://deb.debian.org/debian buster/main i386 libbz2-dev i386 1.0.6-9.2~deb10u1 [31.2 kB]
Get: 139 http://deb.debian.org/debian buster/main i386 liblzma-dev i386 5.2.4-1 [219 kB]
Get: 140 http://deb.debian.org/debian buster/main i386 icu-devtools i386 63.1-6 [196 kB]
Get: 141 http://deb.debian.org/debian buster/main i386 libicu-dev i386 63.1-6 [9374 kB]
Get: 142 http://deb.debian.org/debian buster/main i386 libxmuu1 i386 2:1.1.2-2+b3 [24.2 kB]
Get: 143 http://deb.debian.org/debian buster/main i386 xauth i386 1:1.0.10-1 [40.8 kB]
Get: 144 http://deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB]
Get: 145 http://deb.debian.org/debian buster/main i386 r-base-dev all 3.5.2-1 [4480 B]
Get: 146 http://deb.debian.org/debian buster/main i386 libfile-which-perl all 1.23-1 [16.6 kB]
Get: 147 http://deb.debian.org/debian buster/main i386 libswitch-perl all 2.17-2 [20.5 kB]
Get: 148 http://deb.debian.org/debian buster/main i386 dh-r all 20190121 [35.1 kB]
Get: 149 http://deb.debian.org/debian buster/main i386 gdal-data all 2.4.0+dfsg-1 [744 kB]
Get: 150 http://deb.debian.org/debian buster/main i386 hdf5-helpers i386 1.10.4+repack-10 [35.2 kB]
Get: 151 http://deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB]
Get: 152 http://deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B]
Get: 153 http://deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB]
Get: 154 http://deb.debian.org/debian buster/main i386 libarpack2 i386 3.7.0-2 [103 kB]
Get: 155 http://deb.debian.org/debian buster/main i386 libsuperlu5 i386 5.2.1+dfsg1-4 [160 kB]
Get: 156 http://deb.debian.org/debian buster/main i386 libarmadillo9 i386 1:9.200.7+dfsg-1 [90.5 kB]
Get: 157 http://deb.debian.org/debian buster/main i386 libarpack2-dev i386 3.7.0-2 [117 kB]
Get: 158 http://deb.debian.org/debian buster/main i386 libhdf5-103 i386 1.10.4+repack-10 [1310 kB]
Get: 159 http://deb.debian.org/debian buster/main i386 libhdf5-cpp-103 i386 1.10.4+repack-10 [155 kB]
Get: 160 http://deb.debian.org/debian buster/main i386 libhdf5-dev i386 1.10.4+repack-10 [2738 kB]
Get: 161 http://deb.debian.org/debian buster/main i386 libsuperlu-dev i386 5.2.1+dfsg1-4 [18.4 kB]
Get: 162 http://deb.debian.org/debian buster/main i386 libarmadillo-dev i386 1:9.200.7+dfsg-1 [360 kB]
Get: 163 http://deb.debian.org/debian buster/main i386 libboost1.67-dev i386 1.67.0-13+deb10u1 [8388 kB]
Get: 164 http://deb.debian.org/debian buster/main i386 libboost-dev i386 1.67.0.1 [3864 B]
Get: 165 http://deb.debian.org/debian buster/main i386 libcharls2 i386 2.0.0+dfsg-1 [66.9 kB]
Get: 166 http://deb.debian.org/debian buster/main i386 libcharls-dev i386 2.0.0+dfsg-1 [8020 B]
Get: 167 http://deb.debian.org/debian buster/main i386 libcurl3-gnutls i386 7.64.0-4 [355 kB]
Get: 168 http://deb.debian.org/debian buster/main i386 libcurl4-gnutls-dev i386 7.64.0-4 [453 kB]
Get: 169 http://deb.debian.org/debian buster/main i386 libdap25 i386 3.20.3-1 [594 kB]
Get: 170 http://deb.debian.org/debian buster/main i386 libdapserver7v5 i386 3.20.3-1 [132 kB]
Get: 171 http://deb.debian.org/debian buster/main i386 libdapclient6v5 i386 3.20.3-1 [212 kB]
Get: 172 http://deb.debian.org/debian buster/main i386 libxml2-dev i386 2.9.4+dfsg1-7+b3 [843 kB]
Get: 173 http://deb.debian.org/debian buster/main i386 uuid-dev i386 2.33.1-0.1 [94.0 kB]
Get: 174 http://deb.debian.org/debian buster/main i386 libdap-dev i386 3.20.3-1 [947 kB]
Get: 175 http://deb.debian.org/debian buster/main i386 libpopt0 i386 1.16-12 [51.7 kB]
Get: 176 http://deb.debian.org/debian buster/main i386 libepsilon1 i386 0.9.2+dfsg-4 [42.3 kB]
Get: 177 http://deb.debian.org/debian buster/main i386 libepsilon-dev i386 0.9.2+dfsg-4 [53.3 kB]
Get: 178 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB]
Get: 179 http://deb.debian.org/debian buster/main i386 libfreexl1 i386 1.0.5-3 [35.2 kB]
Get: 180 http://deb.debian.org/debian buster/main i386 libfreexl-dev i386 1.0.5-3 [34.1 kB]
Get: 181 http://deb.debian.org/debian buster/main i386 libfyba0 i386 4.1.1-6 [125 kB]
Get: 182 http://deb.debian.org/debian buster/main i386 libfyba-dev i386 4.1.1-6 [183 kB]
Get: 183 http://deb.debian.org/debian buster/main i386 libgeos-3.7.1 i386 3.7.1-1 [791 kB]
Get: 184 http://deb.debian.org/debian buster/main i386 libgeos-c1v5 i386 3.7.1-1 [304 kB]
Get: 185 http://deb.debian.org/debian buster/main i386 proj-data all 5.2.0-1 [6986 kB]
Get: 186 http://deb.debian.org/debian buster/main i386 libproj13 i386 5.2.0-1 [234 kB]
Get: 187 http://deb.debian.org/debian buster/main i386 libgeotiff2 i386 1.4.3-1 [71.5 kB]
Get: 188 http://deb.debian.org/debian buster/main i386 libgif7 i386 5.1.4-3 [44.4 kB]
Get: 189 http://deb.debian.org/debian buster/main i386 libhdf4-0-alt i386 4.2.13-4 [283 kB]
Get: 190 http://deb.debian.org/debian buster/main i386 libjson-c3 i386 0.12.1+ds-2 [28.7 kB]
Get: 191 http://deb.debian.org/debian buster/main i386 libminizip1 i386 1.1-8+b1 [24.3 kB]
Get: 192 http://deb.debian.org/debian buster/main i386 liburiparser1 i386 0.9.1-1 [51.8 kB]
Get: 193 http://deb.debian.org/debian buster/main i386 libkmlbase1 i386 1.3.0-7 [52.6 kB]
Get: 194 http://deb.debian.org/debian buster/main i386 libkmldom1 i386 1.3.0-7 [196 kB]
Get: 195 http://deb.debian.org/debian buster/main i386 libkmlengine1 i386 1.3.0-7 [85.4 kB]
Get: 196 http://deb.debian.org/debian buster/main i386 libkmlconvenience1 i386 1.3.0-7 [54.2 kB]
Get: 197 http://deb.debian.org/debian buster/main i386 libkmlregionator1 i386 1.3.0-7 [26.5 kB]
Get: 198 http://deb.debian.org/debian buster/main i386 libkmlxsd1 i386 1.3.0-7 [36.7 kB]
Get: 199 http://deb.debian.org/debian buster/main i386 libnetcdf13 i386 1:4.6.2-1 [440 kB]
Get: 200 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB]
Get: 201 http://deb.debian.org/debian buster/main i386 libodbc1 i386 2.3.6-0.1 [236 kB]
Get: 202 http://deb.debian.org/debian buster/main i386 libogdi3.2 i386 3.2.1+ds-4 [246 kB]
Get: 203 http://deb.debian.org/debian buster/main i386 libopenjp2-7 i386 2.3.0-2+deb10u1 [164 kB]
Get: 204 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB]
Get: 205 http://deb.debian.org/debian buster/main i386 libnspr4 i386 2:4.20-1 [122 kB]
Get: 206 http://deb.debian.org/debian buster/main i386 libnss3 i386 2:3.42.1-1+deb10u2 [1237 kB]
Get: 207 http://deb.debian.org/debian buster/main i386 libpoppler82 i386 0.71.0-5 [1548 kB]
Get: 208 http://deb.debian.org/debian buster/main i386 libpq5 i386 11.6-0+deb10u1 [174 kB]
Get: 209 http://deb.debian.org/debian buster/main i386 libqhull7 i386 2015.2-4 [206 kB]
Get: 210 http://deb.debian.org/debian buster/main i386 libspatialite7 i386 4.3.0a-5+b2 [1265 kB]
Get: 211 http://deb.debian.org/debian buster/main i386 libxerces-c3.2 i386 3.2.2+debian-1+b1 [955 kB]
Get: 212 http://deb.debian.org/debian buster/main i386 odbcinst i386 2.3.6-0.1 [48.8 kB]
Get: 213 http://deb.debian.org/debian buster/main i386 odbcinst1debian2 i386 2.3.6-0.1 [81.0 kB]
Get: 214 http://deb.debian.org/debian buster/main i386 libgdal20 i386 2.4.0+dfsg-1+b1 [6689 kB]
Get: 215 http://deb.debian.org/debian buster/main i386 libgeos-dev i386 3.7.1-1 [324 kB]
Get: 216 http://deb.debian.org/debian buster/main i386 libjbig-dev i386 2.1-3.1+b2 [30.8 kB]
Get: 217 http://deb.debian.org/debian buster/main i386 libtiffxx5 i386 4.1.0+git191117-2~deb10u1 [118 kB]
Get: 218 http://deb.debian.org/debian buster/main i386 libtiff-dev i386 4.1.0+git191117-2~deb10u1 [413 kB]
Get: 219 http://deb.debian.org/debian buster/main i386 libgeotiff-dev i386 1.4.3-1 [102 kB]
Get: 220 http://deb.debian.org/debian buster/main i386 libgif-dev i386 5.1.4-3 [47.6 kB]
Get: 221 http://deb.debian.org/debian buster/main i386 libnetcdf-dev i386 1:4.6.2-1 [82.7 kB]
Get: 222 http://deb.debian.org/debian buster/main i386 libhdf4-alt-dev i386 4.2.13-4 [391 kB]
Get: 223 http://deb.debian.org/debian buster/main i386 libjson-c-dev i386 0.12.1+ds-2 [41.2 kB]
Get: 224 http://deb.debian.org/debian buster/main i386 libminizip-dev i386 1.1-8+b1 [31.5 kB]
Get: 225 http://deb.debian.org/debian buster/main i386 liburiparser-dev i386 0.9.1-1 [21.3 kB]
Get: 226 http://deb.debian.org/debian buster/main i386 libkml-dev i386 1.3.0-7 [939 kB]
Get: 227 http://deb.debian.org/debian buster/main i386 libltdl-dev i386 2.4.6-9 [164 kB]
Get: 228 http://deb.debian.org/debian buster/main i386 libproj-dev i386 5.2.0-1 [296 kB]
Get: 229 http://deb.debian.org/debian buster/main i386 libogdi3.2-dev i386 3.2.1+ds-4 [38.2 kB]
Get: 230 http://deb.debian.org/debian buster/main i386 libopenjp2-7-dev i386 2.3.0-2+deb10u1 [44.3 kB]
Get: 231 http://deb.debian.org/debian buster/main i386 libpoppler-dev i386 0.71.0-5 [23.7 kB]
Get: 232 http://deb.debian.org/debian buster/main i386 libpoppler-private-dev i386 0.71.0-5 [187 kB]
Get: 233 http://deb.debian.org/debian buster/main i386 libpq-dev i386 11.6-0+deb10u1 [172 kB]
Get: 234 http://deb.debian.org/debian buster/main i386 libqhull-r7 i386 2015.2-4 [203 kB]
Get: 235 http://deb.debian.org/debian buster/main i386 libqhull-dev i386 2015.2-4 [425 kB]
Get: 236 http://deb.debian.org/debian buster/main i386 libsqlite3-dev i386 3.27.2-3 [823 kB]
Get: 237 http://deb.debian.org/debian buster/main i386 libspatialite-dev i386 4.3.0a-5+b2 [1448 kB]
Get: 238 http://deb.debian.org/debian buster/main i386 libwebpmux3 i386 0.6.1-2 [99.1 kB]
Get: 239 http://deb.debian.org/debian buster/main i386 libwebpdemux2 i386 0.6.1-2 [87.8 kB]
Get: 240 http://deb.debian.org/debian buster/main i386 libwebp-dev i386 0.6.1-2 [363 kB]
Get: 241 http://deb.debian.org/debian buster/main i386 libxerces-c-dev i386 3.2.2+debian-1+b1 [1777 kB]
Get: 242 http://deb.debian.org/debian buster/main i386 libzstd-dev i386 1.3.8+dfsg-3 [286 kB]
Get: 243 http://deb.debian.org/debian buster/main i386 unixodbc-dev i386 2.3.6-0.1 [279 kB]
Get: 244 http://deb.debian.org/debian buster/main i386 libgdal-dev i386 2.4.0+dfsg-1+b1 [8708 kB]
Get: 245 http://deb.debian.org/debian buster/main i386 r-bioc-biocgenerics all 0.28.0-2 [644 kB]
Get: 246 http://deb.debian.org/debian buster/main i386 r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB]
Get: 247 http://deb.debian.org/debian buster/main i386 r-bioc-s4vectors i386 0.20.1-2 [1821 kB]
Get: 248 http://deb.debian.org/debian buster/main i386 r-bioc-iranges i386 2.16.0-1 [2125 kB]
Get: 249 http://deb.debian.org/debian buster/main i386 r-cran-bitops i386 1.0-6-4 [24.3 kB]
Get: 250 http://deb.debian.org/debian buster/main i386 r-cran-rcurl i386 1.95-4.11-1 [710 kB]
Fetched 168 MB in 2s (69.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libbsd0:i386.
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(Reading database ... 19231 files and directories currently installed.)
Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ...
Unpacking libbsd0:i386 (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ...
Unpacking libuchardet0:i386 (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../003-groff-base_1.22.4-3_i386.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../004-libpipeline1_1.5.1-2_i386.deb ...
Unpacking libpipeline1:i386 (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../005-man-db_2.8.5-2_i386.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../006-readline-common_7.0-5_all.deb ...
Unpacking readline-common (7.0-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../007-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../008-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ...
Unpacking libmagic-mgc (1:5.35-4+deb10u1) ...
Selecting previously unselected package libmagic1:i386.
Preparing to unpack .../009-libmagic1_1%3a5.35-4+deb10u1_i386.deb ...
Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ...
Selecting previously unselected package file.
Preparing to unpack .../010-file_1%3a5.35-4+deb10u1_i386.deb ...
Unpacking file (1:5.35-4+deb10u1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../011-gettext-base_0.19.8.1-9_i386.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package ucf.
Preparing to unpack .../012-ucf_3.0038+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package libsigsegv2:i386.
Preparing to unpack .../013-libsigsegv2_2.12-2_i386.deb ...
Unpacking libsigsegv2:i386 (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../014-m4_1.4.18-2_i386.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../015-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../016-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../017-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../018-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libssl1.1:i386.
Preparing to unpack .../019-libssl1.1_1.1.1d-0+deb10u2_i386.deb ...
Unpacking libssl1.1:i386 (1.1.1d-0+deb10u2) ...
Selecting previously unselected package openssl.
Preparing to unpack .../020-openssl_1.1.1d-0+deb10u2_i386.deb ...
Unpacking openssl (1.1.1d-0+deb10u2) ...
Selecting previously unselected package ca-certificates.
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Unpacking ca-certificates (20190110) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../022-dctrl-tools_2.24-3_i386.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../023-libtool_2.4.6-9_all.deb ...
Unpacking libtool (2.4.6-9) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../024-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../025-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../026-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ...
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Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
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update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
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Setting up libmariadb-dev-compat:i386 (1:10.3.22-0+deb10u1) ...
Setting up libpoppler-private-dev:i386 (0.71.0-5) ...
Setting up r-base-core (3.5.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-bioc-genomeinfodbdata (1.2.0-1) ...
Setting up default-libmysqlclient-dev:i386 (1.0.5) ...
Setting up r-bioc-biocgenerics (0.28.0-2) ...
Setting up r-base-dev (3.5.2-1) ...
Setting up r-cran-bitops (1.0-6-4) ...
Setting up r-bioc-s4vectors (0.20.1-2) ...
Setting up r-bioc-iranges (2.16.0-1) ...
Setting up r-cran-rcurl (1.95-4.11-1) ...
Setting up odbcinst (2.3.6-0.1) ...
Setting up dh-autoreconf (19) ...
Setting up odbcinst1debian2:i386 (2.3.6-0.1) ...
Setting up libgdal20 (2.4.0+dfsg-1+b1) ...
Setting up unixodbc-dev:i386 (2.3.6-0.1) ...
Setting up debhelper (12.1.1) ...
Setting up libgdal-dev (2.4.0+dfsg-1+b1) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up dh-r (20190121) ...
Processing triggers for libc-bin (2.28-10) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/r-bioc-genomeinfodb-1.18.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package r-bioc-genomeinfodb
dpkg-buildpackage: info: source version 1.18.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Dylan Aïssi <daissi@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build
make: 'build' is up to date.
 fakeroot debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install -O--buildsystem=R
I: R Package: GenomeInfoDb Version: 1.18.1
I: Building using R version 3.5.2-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sun, 18 Nov 2018 14:24:56 +0100
	mkdir -p /build/r-bioc-genomeinfodb-1.18.1/debian/r-bioc-genomeinfodb/usr/lib/R/site-library
	R CMD INSTALL -l /build/r-bioc-genomeinfodb-1.18.1/debian/r-bioc-genomeinfodb/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Nov 2018 14:24:56 +0100'"
* installing *source* package 'GenomeInfoDb' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GenomeInfoDb)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
W: Ignoring specified R dependency: R (>= 3.1)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.13.8)
I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.17.25)
I: Using r-bioc-iranges for Depends:IRanges (>= 2.13.12)
I: Using r-bioc-genomicranges for Suggests:GenomicRanges
I: Using r-bioc-rsamtools for Suggests:Rsamtools
I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments
I: Using r-bioc-bsgenome for Suggests:BSgenome
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer2
W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.NCBI.GRCh38
W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene
I: Using r-cran-runit for Suggests:RUnit
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rcurl for Imports:RCurl
I: Using r-bioc-genomeinfodbdata for Imports:GenomeInfoDbData
I: BioConductor API version: r-api-bioc-3.8
Create lintian-override for package-contains-documentation-outside-usr-share-doc due to debian/r-bioc-genomeinfodb/usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/README

   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installinit -O--buildsystem=R
   dh_lintian -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   dh_fixperms -O--buildsystem=R
   dh_missing -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-genomeinfodb' in '../r-bioc-genomeinfodb_1.18.1-1_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../r-bioc-genomeinfodb_1.18.1-1_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: user script /srv/workspace/pbuilder/63151/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/63151/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/63151 and its subdirectories
I: Current time: Wed Apr 14 12:19:36 +14 2021
I: pbuilder-time-stamp: 1618352376