I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 10 17:00:46 +14 2021 I: pbuilder-time-stamp: 1623294046 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-freecontact_1.1-4.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 15 07:20:41 2018 +14 gpgv: using RSA key B1A51EB2779DD01743CC19BA1CF792111B5228B0 gpgv: issuer "mestia@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-freecontact_1.1-4.dsc dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying py3_test_fixes.patch dpkg-source: info: applying py3_boost.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/33188/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/33188/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, libboost-python-dev, libfreecontact-dev, python-all-dev, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.67-dev{a} libboost-python1.67.0{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0v5{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 125 MB of archives. After unpacking 396 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2+deb10u1 [1381 kB] Get: 9 http://deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u2 [1538 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2+deb10u1 [1934 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB] Get: 23 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB] Get: 24 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB] Get: 27 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 33 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 34 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 36 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 37 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 42 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 45 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 47 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 50 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 53 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 54 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 55 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 56 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 57 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 58 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 59 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 61 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libboost1.67-dev i386 1.67.0-13+deb10u1 [8388 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libboost-python1.67.0 i386 1.67.0-13+deb10u1 [337 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2+deb10u1 [1059 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2+deb10u1 [31.4 MB] Get: 67 http://deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] Get: 69 http://deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2+deb10u1 [295 kB] Get: 70 http://deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] Get: 71 http://deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] Get: 72 http://deb.debian.org/debian buster/main i386 libpython3.7 i386 3.7.3-2+deb10u1 [1506 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libpython3.7-dev i386 3.7.3-2+deb10u1 [47.7 MB] Get: 74 http://deb.debian.org/debian buster/main i386 libpython3-dev i386 3.7.3-1 [20.2 kB] Get: 75 http://deb.debian.org/debian buster/main i386 python3.7-dev i386 3.7.3-2+deb10u1 [509 kB] Get: 76 http://deb.debian.org/debian buster/main i386 python3-dev i386 3.7.3-1 [1260 B] Get: 77 http://deb.debian.org/debian buster/main i386 libboost-python1.67-dev i386 1.67.0-13+deb10u1 [347 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libboost-python-dev i386 1.67.0.1 [3944 B] Get: 79 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 80 http://deb.debian.org/debian buster/main i386 libfreecontact0v5 i386 1.0.21-7+b1 [63.1 kB] Get: 81 http://deb.debian.org/debian buster/main i386 libfreecontact-dev i386 1.0.21-7+b1 [73.7 kB] Get: 82 http://deb.debian.org/debian buster/main i386 libpython-all-dev i386 2.7.16-1 [1068 B] Get: 83 http://deb.debian.org/debian buster/main i386 libpython3-all-dev i386 3.7.3-1 [1068 B] Get: 84 http://deb.debian.org/debian buster/main i386 python-all i386 2.7.16-1 [1044 B] Get: 85 http://deb.debian.org/debian buster/main i386 python-all-dev i386 2.7.16-1 [1068 B] Get: 86 http://deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] Get: 87 http://deb.debian.org/debian buster/main i386 python3-all-dev i386 3.7.3-1 [1068 B] Fetched 125 MB in 1s (86.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_i386.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_i386.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u2_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u2) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../14-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:i386. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_i386.deb ... Unpacking libpython2-stdlib:i386 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20696 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_i386.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20729 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_i386.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libpython3.7-minimal:i386. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u1_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.3-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. 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Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libpython2.7:i386 (2.7.16-2+deb10u1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libpython2.7-dev:i386 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:i386 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libfreecontact0v5:i386 (1.0.21-7+b1) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython3-all-dev:i386 (3.7.3-1) ... Setting up libpython2-dev:i386 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up libfreecontact-dev (1.0.21-7+b1) ... Setting up python2-dev (2.7.16-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up python-all (2.7.16-1) ... Setting up libpython-dev:i386 (2.7.16-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libpython-all-dev:i386 (2.7.16-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up libboost-python1.67-dev (1.67.0-13+deb10u1) ... Setting up libboost-python-dev (1.67.0.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Mestiashvili dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-freecontact-1.1/.pybuild/cpython2_2.7_freecontact/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-freecontact-1.1/.pybuild/cpython3_3.7_freecontact/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python-freecontact.substvars debian/python3-freecontact.substvars debian/files rm -fr -- debian/python-freecontact/ debian/tmp/ debian/python3-freecontact/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python2,python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py config running config pybuild --configure -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_build: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p 2.7 I: pybuild base:217: /usr/bin/python setup.py build running build running build_ext building 'freecontact' extension creating build creating build/temp.linux-i386-2.7 creating build/temp.linux-i386-2.7/src i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/freecontact.cpp -o build/temp.linux-i386-2.7/src/freecontact.o cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ src/freecontact.cpp: In function 'void input_parset_t(boost::python::dict&, freecontact::parset_t&)': src/freecontact.cpp:157:38: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("rho")) __ps.rho = bp::extract(__kw["rho"]); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:153:58: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("shrink_lambda")) __ps.shrink_lambda = bp::extract(__kw["shrink_lambda"]); ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:151:56: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("pscnt_weight")) __ps.pscnt_weight = bp::extract(__kw["pscnt_weight"]); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:150:50: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("pseudocnt")) __ps.pseudocnt = bp::extract(__kw["pseudocnt"]); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:147:42: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("gapth")) __ps.gapth = bp::extract(__kw["gapth"]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:146:46: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("density")) __ps.density = bp::extract(__kw["density"]); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:144:46: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("clustpc")) __ps.clustpc = bp::extract(__kw["clustpc"]); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/src/freecontact.o -lfreecontact -lboost_python -o /build/python-freecontact-1.1/.pybuild/cpython2_2.7_freecontact/build/freecontact.so pybuild --build -i python{version} -p 3.7 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_ext building 'freecontact' extension creating build/temp.linux-i386-3.7 creating build/temp.linux-i386-3.7/src i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/freecontact.cpp -o build/temp.linux-i386-3.7/src/freecontact.o src/freecontact.cpp: In function 'freq_vec_t input_freq_vec_t(const boost::python::list&)': src/freecontact.cpp:105:64: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] for(size_t i = 0, i_e = len(__aliw); i < i_e; ++i) aliw[i] = bp::extract(__aliw[i]); src/freecontact.cpp: In function 'void input_parset_t(boost::python::dict&, freecontact::parset_t&)': src/freecontact.cpp:157:38: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("rho")) __ps.rho = bp::extract(__kw["rho"]); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:153:58: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("shrink_lambda")) __ps.shrink_lambda = bp::extract(__kw["shrink_lambda"]); ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:151:56: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("pscnt_weight")) __ps.pscnt_weight = bp::extract(__kw["pscnt_weight"]); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:150:50: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("pseudocnt")) __ps.pseudocnt = bp::extract(__kw["pseudocnt"]); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:147:42: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("gapth")) __ps.gapth = bp::extract(__kw["gapth"]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:146:46: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("density")) __ps.density = bp::extract(__kw["density"]); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:144:46: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] if(__kw.has_key("clustpc")) __ps.clustpc = bp::extract(__kw["clustpc"]); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/src/freecontact.o -lfreecontact -lboost_python37 -o /build/python-freecontact-1.1/.pybuild/cpython3_3.7_freecontact/build/freecontact.cpython-37m-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/python-freecontact-1.1/test/test01.py" \ dh_auto_test || true dh_auto_test: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p 2.7 I: pybuild base:217: python2.7 /build/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.049246 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.035886 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936355, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.3287 secs, inverted matrix (incl LUf) in 9.75111 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034737713 collected apc_mean[fro] = 3.35437752887409 all done in 9.96918 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.043142 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.029686 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475301, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 4.42618 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2will use 1 OMP threads 21/1000total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.02959 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936355, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.22764 secs, inverted matrix (incl LUf) in 9.60641 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034737713 collected apc_mean[fro] = 3.35437752887409 . ---------------------------------------------------------------------- Ran 3 tests in 26.450s OK pybuild --test -i python{version} -p 3.7 I: pybuild base:217: python3.7 /build/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.042324 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.031052 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936355, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.20329 secs, inverted matrix (incl LUf) in 9.53609 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034737713 collected apc_mean[fro] = 3.35437752887409 all done in 9.73714 secs . ---------------------------------------------------------------------- Ran 3 tests in 9.744s OK  !!!Skipping the rest of the tests for python3.7, need to be fixed! make[1]: Leaving directory '/build/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f -- debian/python-freecontact.substvars debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python-freecontact/ debian/python-freecontact/ debian/tmp/ debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ dh_auto_install -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d /build/python-freecontact-1.1/debian/tmp dh_auto_install: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p 2.7 --dest-dir /build/python-freecontact-1.1/debian/tmp I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-freecontact-1.1/debian/python-freecontact running install running build running build_ext running install_lib creating /build/python-freecontact-1.1/debian/python-freecontact creating /build/python-freecontact-1.1/debian/python-freecontact/usr creating /build/python-freecontact-1.1/debian/python-freecontact/usr/lib creating /build/python-freecontact-1.1/debian/python-freecontact/usr/lib/python2.7 creating /build/python-freecontact-1.1/debian/python-freecontact/usr/lib/python2.7/dist-packages copying /build/python-freecontact-1.1/.pybuild/cpython2_2.7_freecontact/build/freecontact.so -> /build/python-freecontact-1.1/debian/python-freecontact/usr/lib/python2.7/dist-packages running install_egg_info Writing /build/python-freecontact-1.1/debian/python-freecontact/usr/lib/python2.7/dist-packages/python_freecontact-1.1.egg-info pybuild --install -i python{version} -p 3.7 --dest-dir /build/python-freecontact-1.1/debian/tmp I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-freecontact-1.1/debian/python3-freecontact running install running build running build_ext running install_lib creating /build/python-freecontact-1.1/debian/python3-freecontact creating /build/python-freecontact-1.1/debian/python3-freecontact/usr creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.7 creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.7/dist-packages copying /build/python-freecontact-1.1/.pybuild/cpython3_3.7_freecontact/build/freecontact.cpython-37m-i386-linux-gnu.so -> /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.7/dist-packages running install_egg_info Writing /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.7/dist-packages/python_freecontact-1.1.egg-info dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python-freecontact/usr/share/doc/python-freecontact install -d debian/.debhelper/generated/python-freecontact install -p -m0644 debian/copyright debian/python-freecontact/usr/share/doc/python-freecontact/copyright install -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -d debian/.debhelper/generated/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -p -m0644 debian/changelog debian/python-freecontact/usr/share/doc/python-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python-freecontact/usr/share/doc/python-freecontact/changelog install -p -m0644 debian/changelog debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python-freecontact/usr/share/doc/python-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python-freecontact/usr/share/doc/python-freecontact/examples dh_python2 -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir D: dh_python2 dh_python2:393: version: 3.20190308 D: dh_python2 dh_python2:394: argv: ['/usr/share/dh-python/dh_python2', '-O--buildsystem=pybuild', '-O--builddirectory=/build/python-freecontact-1.1/builddir'] D: dh_python2 dh_python2:395: options: {'guess_versions': True, 'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'namespaces': None, 'clean_pycentral': False, 'shebang': None, 'ignore_shebangs': False, 'ignore_namespace': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--builddirectory=/build/python-freecontact-1.1/builddir'} D: dh_python2 dh_python2:396: args: [] D: dh_python2 dh_python2:398: supported Python versions: 2.7 (default=2.7) D: dh_python2 debhelper:107: skipping package: python3-freecontact D: dh_python2 debhelper:153: source=python-freecontact, binary packages=['python-freecontact'] D: dh_python2 dh_python2:415: processing package python-freecontact... D: dh_python2 tools:232: invoking: /usr/bin/python2.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python2 fs:343: renaming freecontact.so to freecontact.i386-linux-gnu.so D: dh_python2 fs:260: package python-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python-freecontact/usr/lib/python2.7/dist-packages/python_freecontact-1.1.egg-info'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('2.7')}, 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-freecontact D: dh_python2 depends:272: D={'python:any (>= 2.7~)', 'python (<< 2.8)', 'python:any (<< 2.8)', 'python (>= 2.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir D: dh_python3 dh_python3:161: version: 3.20190308 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--builddirectory=/build/python-freecontact-1.1/builddir'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7) D: dh_python3 debhelper:107: skipping package: python-freecontact D: dh_python3 debhelper:153: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:183: processing package python3-freecontact... D: dh_python3 fs:49: moving files from debian/python3-freecontact/usr/lib/python3.7/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-freecontact D: dh_python3 depends:272: D={'python3 (<< 3.8)', 'python3 (>= 3.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python-freecontact cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian chmod a-x usr/share/doc/python-freecontact/changelog usr/share/doc/python-freecontact/changelog.Debian usr/share/doc/python-freecontact/examples/demo_1000.aln gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python-freecontact/changelog usr/share/doc/python-freecontact/changelog.Debian usr/share/doc/python-freecontact/examples/demo_1000.aln cd '/build/python-freecontact-1.1' cd '/build/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir find debian/python-freecontact -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-freecontact -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_strip -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/.debhelper/python-freecontact/dbgsym-root/usr/lib/debug/.build-id/43 objcopy --only-keep-debug --compress-debug-sections debian/python-freecontact/usr/lib/python2.7/dist-packages/freecontact.i386-linux-gnu.so debian/.debhelper/python-freecontact/dbgsym-root/usr/lib/debug/.build-id/43/6d2276c6e2a54ad2135e6117ab93609d4f3ae6.debug install -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/be/6572699bef1a7e94403b849f5750fa31e80150.debug chmod 0644 -- debian/.debhelper/python-freecontact/dbgsym-root/usr/lib/debug/.build-id/43/6d2276c6e2a54ad2135e6117ab93609d4f3ae6.debug chown 0:0 -- debian/.debhelper/python-freecontact/dbgsym-root/usr/lib/debug/.build-id/43/6d2276c6e2a54ad2135e6117ab93609d4f3ae6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-freecontact/usr/lib/python2.7/dist-packages/freecontact.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-freecontact/dbgsym-root/usr/lib/debug/.build-id/43/6d2276c6e2a54ad2135e6117ab93609d4f3ae6.debug debian/python-freecontact/usr/lib/python2.7/dist-packages/freecontact.i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/be/6572699bef1a7e94403b849f5750fa31e80150.debug chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/be/6572699bef1a7e94403b849f5750fa31e80150.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/be/6572699bef1a7e94403b849f5750fa31e80150.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python-freecontact/dbgsym-root/usr/share/doc ln -s python-freecontact debian/.debhelper/python-freecontact/dbgsym-root/usr/share/doc/python-freecontact-dbgsym install -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym dh_makeshlibs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/python-freecontact/DEBIAN/shlibs rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-37m-i386-linux-gnu.so install -d debian/python-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python-freecontact.substvars debian/python-freecontact/usr/lib/python2.7/dist-packages/freecontact.i386-linux-gnu.so dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/python-freecontact.debhelper.log debian/python3-freecontact.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/python-freecontact-1.1' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' echo misc:Depends= >> debian/python-freecontact.substvars echo misc:Pre-Depends= >> debian/python-freecontact.substvars install -d debian/.debhelper/python-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython-freecontact -ldebian/changelog -Tdebian/python-freecontact.substvars -Pdebian/.debhelper/python-freecontact/dbgsym-root "-VDescription=FreeContact is a protein residue contact predictor optimized for speed.\${Newline}Its input is a multiple sequence alignment. FreeContact can function as an\${Newline}accelerated drop-in for the published contact predictors\${Newline}EVfold-mfDCA of DS. Marks (2011) and\${Newline}PSICOV of D. Jones (2011).\${Newline}\${Newline}FreeContact is accelerated by a combination of vector instructions, multiple\${Newline}threads, and faster implementation of key parts.\${Newline}Depending on the alignment, 8-fold or higher speedups are possible.\${Newline}\${Newline}A sufficiently large alignment is required for meaningful results.\${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count\${Newline}bigger than the length of the query sequence should be used. Alignments with\${Newline}tens of thousands of (effective) sequences are considered good input.\${Newline}\${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite\${Newline}can be used to generate the alignments, for example." -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python-freecontact-dbgsym "-DDepends=python-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python-freecontact" -DBuild-Ids=436d2276c6e2a54ad2135e6117ab93609d4f3ae6 -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/.debhelper/python3-freecontact/dbgsym-root "-VDescription=FreeContact is a protein residue contact predictor optimized for speed.\${Newline}Its input is a multiple sequence alignment. FreeContact can function as an\${Newline}accelerated drop-in for the published contact predictors\${Newline}EVfold-mfDCA of DS. Marks (2011) and\${Newline}PSICOV of D. Jones (2011).\${Newline}\${Newline}FreeContact is accelerated by a combination of vector instructions, multiple\${Newline}threads, and faster implementation of key parts.\${Newline}Depending on the alignment, 8-fold or higher speedups are possible.\${Newline}\${Newline}A sufficiently large alignment is required for meaningful results.\${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count\${Newline}bigger than the length of the query sequence should be used. Alignments with\${Newline}tens of thousands of (effective) sequences are considered good input.\${Newline}\${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite\${Newline}can be used to generate the alignments, for example." -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" -DBuild-Ids=be6572699bef1a7e94403b849f5750fa31e80150 -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-freecontact: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-freecontact: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/python3-freecontact -UMulti-Arch "-VDescription=FreeContact is a protein residue contact predictor optimized for speed.\${Newline}Its input is a multiple sequence alignment. FreeContact can function as an\${Newline}accelerated drop-in for the published contact predictors\${Newline}EVfold-mfDCA of DS. Marks (2011) and\${Newline}PSICOV of D. Jones (2011).\${Newline}\${Newline}FreeContact is accelerated by a combination of vector instructions, multiple\${Newline}threads, and faster implementation of key parts.\${Newline}Depending on the alignment, 8-fold or higher speedups are possible.\${Newline}\${Newline}A sufficiently large alignment is required for meaningful results.\${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count\${Newline}bigger than the length of the query sequence should be used. Alignments with\${Newline}tens of thousands of (effective) sequences are considered good input.\${Newline}\${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite\${Newline}can be used to generate the alignments, for example." chmod 0644 -- debian/.debhelper/python-freecontact/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython-freecontact -ldebian/changelog -Tdebian/python-freecontact.substvars -Pdebian/python-freecontact -UMulti-Arch "-VDescription=FreeContact is a protein residue contact predictor optimized for speed.\${Newline}Its input is a multiple sequence alignment. FreeContact can function as an\${Newline}accelerated drop-in for the published contact predictors\${Newline}EVfold-mfDCA of DS. Marks (2011) and\${Newline}PSICOV of D. Jones (2011).\${Newline}\${Newline}FreeContact is accelerated by a combination of vector instructions, multiple\${Newline}threads, and faster implementation of key parts.\${Newline}Depending on the alignment, 8-fold or higher speedups are possible.\${Newline}\${Newline}A sufficiently large alignment is required for meaningful results.\${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count\${Newline}bigger than the length of the query sequence should be used. Alignments with\${Newline}tens of thousands of (effective) sequences are considered good input.\${Newline}\${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite\${Newline}can be used to generate the alignments, for example." dpkg-gencontrol: warning: package python-freecontact: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-freecontact: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/python-freecontact/DEBIAN/control chown 0:0 -- debian/python-freecontact/DEBIAN/control dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-freecontact/DEBIAN/control chown 0:0 -- debian/python3-freecontact/DEBIAN/control make[1]: Leaving directory '/build/python-freecontact-1.1' dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums chown 0:0 -- debian/python3-freecontact/DEBIAN/md5sums chmod 0644 -- debian/python-freecontact/DEBIAN/md5sums chown 0:0 -- debian/python-freecontact/DEBIAN/md5sums cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python-freecontact/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python-freecontact/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dpkg-deb --build debian/python-freecontact .. dpkg-deb --build debian/.debhelper/python-freecontact/dbgsym-root .. dpkg-deb --build debian/python3-freecontact .. dpkg-deb --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb: building package 'python-freecontact' in '../python-freecontact_1.1-4_i386.deb'. dpkg-deb: building package 'python-freecontact-dbgsym' in '../python-freecontact-dbgsym_1.1-4_i386.deb'. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-4_i386.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-freecontact_1.1-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/33188/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/33188/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/33188 and its subdirectories I: Current time: Thu Jun 10 17:02:07 +14 2021 I: pbuilder-time-stamp: 1623294127