I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 15 16:31:41 +14 2020 I: pbuilder-time-stamp: 1594780301 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pynifti_0.20100607.1-4.1.dsc] I: copying [./pynifti_0.20100607.1.orig.tar.gz] I: copying [./pynifti_0.20100607.1-4.1.diff.gz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Aug 19 05:52:21 2015 +14 gpgv: using RSA key BD7EAA60778FA6F5 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pynifti_0.20100607.1-4.1.dsc dpkg-source: info: extracting pynifti in pynifti-0.20100607.1 dpkg-source: info: unpacking pynifti_0.20100607.1.orig.tar.gz dpkg-source: info: applying pynifti_0.20100607.1-4.1.diff.gz dpkg-source: info: upstream files that have been modified: pynifti-0.20100607.1/Makefile pynifti-0.20100607.1/TODO pynifti-0.20100607.1/man/pynifti_pst.1 pynifti-0.20100607.1/nifti/clib.i pynifti-0.20100607.1/nifti/format.py pynifti-0.20100607.1/nifti/utils.py pynifti-0.20100607.1/setup.py pynifti-0.20100607.1/tests/test_fileio.py I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12021/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/12021/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/12021/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=bc7fa02bc7ab44de80074d96adcae58a LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=12021 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Zi0c1OvTJI/pbuilderrc_nqEZ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Zi0c1OvTJI/b2 --logfile b2/build.log pynifti_0.20100607.1-4.1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux I: ls -l /bin total 5488 -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash -rwxr-xr-x 1 root root 120676 Mar 1 2019 date -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd -rwxr-xr-x 1 root root 100620 Mar 1 2019 df -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 34532 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln -rwxr-xr-x 1 root root 55400 Jul 27 2018 login -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 10 2019 more -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 15 16:33 sh -> bash lrwxrwxrwx 1 root root 4 Jul 14 22:25 sh.distrib -> dash -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty -rwsr-xr-x 1 root root 71072 Jan 10 2019 su -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch -rwxr-xr-x 1 root root 34532 Mar 1 2019 true -rwxr-xr-x 1 root root 17768 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/12021/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cdbs, debhelper (>= 5.0.38), swig (>= 1.3.29), python-all-dev (>= 2.4), dh-python, python-numpy, libnifti-dev (>> 1.1.0-2), python-sphinx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cdbs; however: Package cdbs is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 5.0.38); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on swig (>= 1.3.29); however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev (>= 2.4); however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on libnifti-dev (>> 1.1.0-2); however: Package libnifti-dev is not installed. pbuilder-satisfydepends-dummy depends on python-sphinx; however: Package python-sphinx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} cdbs{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnifti-dev{a} libnifti2{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python{a} python-alabaster{a} python-all{a} python-all-dev{a} python-babel{a} python-babel-localedata{a} python-certifi{a} python-chardet{a} python-dev{a} python-docutils{a} python-idna{a} python-imagesize{a} python-jinja2{a} python-markupsafe{a} python-minimal{a} python-numpy{a} python-packaging{a} python-pkg-resources{a} python-pygments{a} python-pyparsing{a} python-requests{a} python-roman{a} python-six{a} python-sphinx{a} python-typing{a} python-tz{a} python-urllib3{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} swig{a} swig3.0{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl docutils-doc javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libpaper-utils lynx python-cryptography python-enum34 python-ipaddress python-openssl python-pil shared-mime-info wget xdg-user-dirs 0 packages upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 79.0 MB of archives. After unpacking 243 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2+deb10u1 [1381 kB] Get: 9 http://deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2+deb10u1 [1934 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB] Get: 23 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB] Get: 24 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB] Get: 27 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main i386 sgml-base all 1.29 [14.8 kB] Get: 31 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 34 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 35 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 37 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 38 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 39 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 40 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 41 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 42 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u3 [853 kB] Get: 43 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB] Get: 44 http://deb.debian.org/debian buster/main i386 cdbs all 0.4.159 [83.7 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 46 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 49 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 50 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 51 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 57 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 58 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 62 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 63 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 64 http://deb.debian.org/debian buster/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 65 http://deb.debian.org/debian buster/main i386 docutils-common all 0.14+dfsg-4 [167 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 67 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] Get: 69 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 71 http://deb.debian.org/debian buster/main i386 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 72 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libnifti2 i386 2.0.0-3 [101 kB] Get: 74 http://deb.debian.org/debian buster/main i386 libnifti-dev i386 2.0.0-3 [140 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2+deb10u1 [1059 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2+deb10u1 [31.4 MB] Get: 77 http://deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] Get: 79 http://deb.debian.org/debian buster/main i386 libpython-all-dev i386 2.7.16-1 [1068 B] Get: 80 http://deb.debian.org/debian buster/main i386 python-alabaster all 0.7.8-1 [18.4 kB] Get: 81 http://deb.debian.org/debian buster/main i386 python-all i386 2.7.16-1 [1044 B] Get: 82 http://deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2+deb10u1 [295 kB] Get: 83 http://deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] Get: 84 http://deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] Get: 85 http://deb.debian.org/debian buster/main i386 python-all-dev i386 2.7.16-1 [1068 B] Get: 86 http://deb.debian.org/debian buster/main i386 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 87 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 88 http://deb.debian.org/debian buster/main i386 python-tz all 2019.1-1 [33.6 kB] Get: 89 http://deb.debian.org/debian buster/main i386 python-babel all 2.6.0+dfsg.1-1 [97.3 kB] Get: 90 http://deb.debian.org/debian buster/main i386 python-certifi all 2018.8.24-1 [140 kB] Get: 91 http://deb.debian.org/debian buster/main i386 python-chardet all 3.0.4-3 [80.6 kB] Get: 92 http://deb.debian.org/debian buster/main i386 python-roman all 2.0.0-3 [8688 B] Get: 93 http://deb.debian.org/debian buster/main i386 python-docutils all 0.14+dfsg-4 [379 kB] Get: 94 http://deb.debian.org/debian buster/main i386 python-idna all 2.6-1 [34.1 kB] Get: 95 http://deb.debian.org/debian buster/main i386 python-imagesize all 1.0.0-1 [4888 B] Get: 96 http://deb.debian.org/debian buster/main i386 python-markupsafe i386 1.1.0-1 [14.2 kB] Get: 97 http://deb.debian.org/debian buster/main i386 python-jinja2 all 2.10-2 [106 kB] Get: 98 http://deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] Get: 99 http://deb.debian.org/debian buster/main i386 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 100 http://deb.debian.org/debian buster/main i386 python-six all 1.12.0-1 [15.7 kB] Get: 101 http://deb.debian.org/debian buster/main i386 python-packaging all 19.0-1 [20.4 kB] Get: 102 http://deb.debian.org/debian buster/main i386 python-pygments all 2.3.1+dfsg-1 [596 kB] Get: 103 http://deb.debian.org/debian buster/main i386 python-urllib3 all 1.24.1-1 [97.0 kB] Get: 104 http://deb.debian.org/debian buster/main i386 python-requests all 2.21.0-1 [67.1 kB] Get: 105 http://deb.debian.org/debian buster/main i386 python-typing all 3.6.6-1 [22.7 kB] Get: 106 http://deb.debian.org/debian buster/main i386 sphinx-common all 1.8.4-1 [500 kB] Get: 107 http://deb.debian.org/debian buster/main i386 python-sphinx all 1.8.4-1 [482 kB] Get: 108 http://deb.debian.org/debian buster/main i386 swig3.0 i386 3.0.12-2 [1456 kB] Get: 109 http://deb.debian.org/debian buster/main i386 swig i386 3.0.12-2 [310 kB] Fetched 79.0 MB in 9s (8332 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_i386.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../14-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... 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Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u1_i386.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u1) ... Setting up libssl1.1:i386 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:i386 (3.7.3-2+deb10u1) ... Setting up libexpat1:i386 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20986 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:i386. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u1_i386.deb ... Unpacking libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u1_i386.deb ... Unpacking python3.7 (3.7.3-2+deb10u1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../libpython3-stdlib_3.7.3-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21398 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_i386.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../04-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../07-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. 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Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../21-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../23-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../24-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../26-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../27-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../32-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../33-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../34-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) ... Selecting previously unselected package xml-core. Preparing to unpack .../35-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../36-docutils-common_0.14+dfsg-4_all.deb ... Unpacking docutils-common (0.14+dfsg-4) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../37-libgfortran5_8.3.0-6_i386.deb ... Unpacking libgfortran5:i386 (8.3.0-6) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../38-libblas3_3.8.0-2_i386.deb ... Unpacking libblas3:i386 (3.8.0-2) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../39-libexpat1-dev_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1-dev:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../40-libjs-jquery_3.3.1~dfsg-3_all.deb ... Unpacking libjs-jquery (3.3.1~dfsg-3) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../41-libjs-underscore_1.9.1~dfsg-1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../42-libjs-sphinxdoc_1.8.4-1_all.deb ... Unpacking libjs-sphinxdoc (1.8.4-1) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../43-liblapack3_3.8.0-2_i386.deb ... Unpacking liblapack3:i386 (3.8.0-2) ... Selecting previously unselected package libnifti2. Preparing to unpack .../44-libnifti2_2.0.0-3_i386.deb ... Unpacking libnifti2 (2.0.0-3) ... Selecting previously unselected package libnifti-dev. Preparing to unpack .../45-libnifti-dev_2.0.0-3_i386.deb ... Unpacking libnifti-dev (2.0.0-3) ... Selecting previously unselected package libpython2.7:i386. Preparing to unpack .../46-libpython2.7_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2.7-dev:i386. Preparing to unpack .../47-libpython2.7-dev_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-dev:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-dev:i386. Preparing to unpack .../48-libpython2-dev_2.7.16-1_i386.deb ... Unpacking libpython2-dev:i386 (2.7.16-1) ... Selecting previously unselected package libpython-dev:i386. Preparing to unpack .../49-libpython-dev_2.7.16-1_i386.deb ... Unpacking libpython-dev:i386 (2.7.16-1) ... Selecting previously unselected package libpython-all-dev:i386. Preparing to unpack .../50-libpython-all-dev_2.7.16-1_i386.deb ... Unpacking libpython-all-dev:i386 (2.7.16-1) ... Selecting previously unselected package python-alabaster. Preparing to unpack .../51-python-alabaster_0.7.8-1_all.deb ... Unpacking python-alabaster (0.7.8-1) ... 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No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:i386 (2.2.6-2+deb10u1) ... Setting up swig3.0 (3.0.12-2) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up sgml-base (1.29) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libnifti-dev (2.0.0-3) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up cdbs (0.4.159) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Setting up swig (3.0.12-2) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libpython2.7:i386 (2.7.16-2+deb10u1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libpython2.7-dev:i386 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up libpython2-dev:i386 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python2-dev (2.7.16-1) ... Setting up python-typing (3.6.6-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-all (2.7.16-1) ... Setting up python-certifi (2018.8.24-1) ... Setting up python-pygments (2.3.1+dfsg-1) ... Setting up libpython-dev:i386 (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-imagesize (1.0.0-1) ... Setting up python-idna (2.6-1) ... Setting up python-markupsafe (1.1.0-1) ... Setting up python-roman (2.0.0-3) ... Setting up python-tz (2019.1-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-chardet (3.0.4-3) ... Setting up python-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-dev (2.7.16-1) ... Setting up python-packaging (19.0-1) ... Setting up python-urllib3 (1.24.1-1) ... Setting up libpython-all-dev:i386 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-jinja2 (2.10-2) ... Setting up python-requests (2.21.0-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python2/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/pynifti-0.20100607.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pynifti dpkg-buildpackage: info: source version 0.20100607.1-4.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Matthias Klose dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file fakeroot debian/rules clean pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions test -x debian/rules dh_clean dh_clean: Compatibility levels before 9 are deprecated (level 5 in use) cd . && python setup.py clean -a; running clean 'build/lib.linux-i686-2.7' does not exist -- can't clean it 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts.linux-i686-2.7' does not exist -- can't clean it rm -rf debian/python-module-stampdir find "/build/pynifti-0.20100607.1" -name '*.py[co]' -delete find "/build/pynifti-0.20100607.1" -name __pycache__ -type d -empty -delete find "/build/pynifti-0.20100607.1" -prune -name '*.egg-info' -exec rm -rf '{}' ';' /usr/bin/make distclean make[1]: Entering directory '/build/pynifti-0.20100607.1' rm -rf build rm *-stamp rm: cannot remove '*-stamp': No such file or directory make[1]: [Makefile:50: clean] Error 1 (ignored) rm nifti/clib.py nifti/_clib.so rm: cannot remove 'nifti/clib.py': No such file or directory rm: cannot remove 'nifti/_clib.so': No such file or directory make[1]: [Makefile:51: clean] Error 1 (ignored) find 3rd -mindepth 2 -maxdepth 2 -type f -name '*-stamp' | xargs -L10 rm -f rm MANIFEST rm: cannot remove 'MANIFEST': No such file or directory make[1]: [Makefile:56: distclean] Error 1 (ignored) rm tests/*.pyc rm: cannot remove 'tests/*.pyc': No such file or directory make[1]: [Makefile:57: distclean] Error 1 (ignored) rm coverage rm: cannot remove 'coverage': No such file or directory make[1]: [Makefile:58: distclean] Error 1 (ignored) rm -r dist rm: cannot remove 'dist': No such file or directory make[1]: [Makefile:60: distclean] Error 1 (ignored) rm build-stamp apidoc-stamp rm: cannot remove 'build-stamp': No such file or directory rm: cannot remove 'apidoc-stamp': No such file or directory make[1]: [Makefile:61: distclean] Error 1 (ignored) rm tests/data/*.hdr.* tests/data/*.img.* tests/data/something.nii \ tests/data/noise* tests/data/None.nii rm: cannot remove 'tests/data/*.hdr.*': No such file or directory rm: cannot remove 'tests/data/*.img.*': No such file or directory rm: cannot remove 'tests/data/something.nii': No such file or directory rm: cannot remove 'tests/data/noise*': No such file or directory rm: cannot remove 'tests/data/None.nii': No such file or directory make[1]: [Makefile:62: distclean] Error 1 (ignored) make[1]: Leaving directory '/build/pynifti-0.20100607.1' debian/rules build pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions test -x debian/rules mkdir -p "." CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 mkdir -p debian/python-module-stampdir set -e; cd . && python setup.py build --build-base="/build/pynifti-0.20100607.1/./build"; running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "nifti._clib" sources creating /build/pynifti-0.20100607.1/build creating /build/pynifti-0.20100607.1/build/src.linux-i686-2.7 creating /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti swig: nifti/clib.i swig -python -I/usr/include/nifti -I/usr/include/nifticlibs -I/usr/local/include/nifti -I/usr/local/include/nifticlibs -I/usr/local/include -o /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c -outdir /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti nifti/clib.i Language subdirectory: python Search paths: ./ /usr/include/nifti/ /usr/include/nifticlibs/ /usr/local/include/nifti/ /usr/local/include/nifticlibs/ /usr/local/include/ ./swig_lib/python/ /usr/share/swig3.0/python/ ./swig_lib/ /usr/share/swig3.0/ Preprocessing... Starting language-specific parse... Processing unnamed structs... Processing types... C++ analysis... Generating wrappers... build_src: building npy-pkg config files running build_py creating /build/pynifti-0.20100607.1/build/lib.linux-i686-2.7 creating /build/pynifti-0.20100607.1/build/lib.linux-i686-2.7/nifti copying nifti/imgfx.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/niftiformat.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/nifticlib.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/format.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/__init__.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/niftiimage.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/utils.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/image.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying nifti/extensions.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti copying /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib.py -> /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'nifti._clib' extension compiling C sources C compiler: i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC creating /build/pynifti-0.20100607.1/build/temp.linux-i686-2.7/build creating /build/pynifti-0.20100607.1/build/temp.linux-i686-2.7/build/pynifti-0.20100607.1 creating /build/pynifti-0.20100607.1/build/temp.linux-i686-2.7/build/pynifti-0.20100607.1/build creating /build/pynifti-0.20100607.1/build/temp.linux-i686-2.7/build/pynifti-0.20100607.1/build/src.linux-i686-2.7 creating /build/pynifti-0.20100607.1/build/temp.linux-i686-2.7/build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti compile options: '-I/usr/include/nifti -I/usr/include/nifticlibs -I/usr/local/include/nifti -I/usr/local/include/nifticlibs -I/usr/local/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' i686-linux-gnu-gcc: /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3082: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3148:54: warning: initialization of 'void (*)(PyObject *)' {aka 'void (*)(struct _object *)'} from incompatible pointer type 'void (*)(_MyDeallocObject *)' {aka 'void (*)(struct *)'} [-Wincompatible-pointer-types] 0, "mydeallocator", sizeof(_MyDeallocObject), 0, _mydealloc_dealloc, ^~~~~~~~~~~~~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3148:54: note: (near initialization for '_MyDeallocType.tp_dealloc') /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c: In function 'wrapImageDataWithArray': /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3239:12: warning: assignment to 'PyObject *' {aka 'struct _object *'} from incompatible pointer type '_MyDeallocObject *' {aka 'struct *'} [-Wincompatible-pointer-types] newobj = PyObject_New(_MyDeallocObject, &_MyDeallocType); ^ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c: At top level: /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3924:17: warning: function declaration isn't a prototype [-Wstrict-prototypes] static short *new_shortp() { ^~~~~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3945:15: warning: function declaration isn't a prototype [-Wstrict-prototypes] static int *new_intp() { ^~~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:3966:24: warning: function declaration isn't a prototype [-Wstrict-prototypes] static unsigned int *new_uintp() { ^~~~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:4010:17: warning: function declaration isn't a prototype [-Wstrict-prototypes] static float *new_floatp() { ^~~~~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:4031:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static double *new_doublep() { ^~~~~~~~~~~ /build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.c:4052:16: warning: function declaration isn't a prototype [-Wstrict-prototypes] static char *new_charp() { ^~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security /build/pynifti-0.20100607.1/./build/temp.linux-i686-2.7/build/pynifti-0.20100607.1/build/src.linux-i686-2.7/nifti/clib_wrap.o -lniftiio -o /build/pynifti-0.20100607.1/./build/lib.linux-i686-2.7/nifti/_clib.so running build_scripts creating /build/pynifti-0.20100607.1/build/scripts.linux-i686-2.7 copying and adjusting bin/pynifti_pst -> /build/pynifti-0.20100607.1/./build/scripts.linux-i686-2.7 changing mode of /build/pynifti-0.20100607.1/./build/scripts.linux-i686-2.7/pynifti_pst from 664 to 775 touch debian/python-module-stampdir/python-nifti /usr/bin/make unittest make[1]: Entering directory '/build/pynifti-0.20100607.1' python setup.py config --noisy running config python setup.py build_ext running build_ext running build_src build_src building extension "nifti._clib" sources build_src: building npy-pkg config files customize UnixCCompiler customize UnixCCompiler using build_ext python setup.py build_py running build_py # to overcome the issue of not-installed _clib.so ln -sf ../build/lib.linux-i686-2.7/nifti/_clib.so nifti/ ln -sf ../build/src.linux-i686-2.7/nifti/clib.py nifti/ touch build-stamp EEEEEEEEEEEEEEEEE....EEE.E ====================================================================== ERROR: testArrayAssign (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 337, in testArrayAssign self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testDTypesSupport (test_fileio.FileIOTests) Check load/cycles with all supported dtypes ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 375, in testDTypesSupport nim.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testDataAccess (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 78, in testDataAccess self.failUnlessEqual(self.nimg.data[0,4,17,42], 435) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testDataOwnership (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 88, in testDataOwnership data_copy = self.nimg.asarray() File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testExtensionsSurvive (test_fileio.FileIOTests) check if extensions actually get safed to the file. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 271, in testExtensionsSurvive self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testFromScratch (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 110, in testFromScratch n.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testIdempotentLoadSaveCycle (test_fileio.FileIOTests) check if file is unchanged by load/save cycle. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 58, in testIdempotentLoadSaveCycle self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testMemoryMapping (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 134, in testMemoryMapping self.nimg.save(self.fp_plain.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testMetaReconstruction (test_fileio.FileIOTests) Check if the meta data gets properly reconstructed during ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 316, in testMetaReconstruction self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testPristineExtensions (test_fileio.FileIOTests) See whether extensions of variable length are loaded properly. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 299, in testPristineExtensions self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testQFormSetting (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 167, in testQFormSetting self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testQFormSetting_fromArray (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 217, in testQFormSetting_fromArray nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testQFormSetting_fromFile (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 178, in testQFormSetting_fromFile self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testUnicodeHandling (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 364, in testUnicodeHandling nim.save(outpath) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testUnicodeLoadSaveCycle (test_fileio.FileIOTests) check load/save cycle for unicode filenames. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 69, in testUnicodeLoadSaveCycle self.nimg.save( os.path.join( self.workdir, 'üöä.nii.gz') ) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: test_setPixDims (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 231, in test_setPixDims self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: test_setVoxDims (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 252, in test_setVoxDims self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testMetaData (test_extensions.NiftiExtensionTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_extensions.py", line 59, in testMetaData nim2 = NiftiImage(nim.data, nim.header) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testArrayAssign (test_misc.MiscTests) Test whether the header is updated correctly when assigning a new ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_misc.py", line 50, in testArrayAssign self.failUnless(nimg.data.shape == alt_array.shape) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testCopying (test_misc.MiscTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_misc.py", line 60, in testCopying n2.data[0,3,4,2] = 543 File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testPickleCycle (test_misc.MiscTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_misc.py", line 96, in testPickleCycle self.failUnless((nim.data == nim2.data).all()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ---------------------------------------------------------------------- Ran 26 tests in 2.067s FAILED (errors=21) make[1]: Leaving directory '/build/pynifti-0.20100607.1' /usr/bin/make htmldoc make[1]: Entering directory '/build/pynifti-0.20100607.1' cd doc && PYTHONPATH=/build/pynifti-0.20100607.1 /usr/bin/make html make[2]: Entering directory '/build/pynifti-0.20100607.1/doc' mkdir -p ../build/html ../build/doctrees sphinx-build -b html -d ../build/doctrees . ../build/html Running Sphinx v1.8.4 building [mo]: targets for 0 po files that are out of date building [html]: targets for 9 source files that are out of date updating environment: 9 added, 0 changed, 0 removed reading sources... [ 11%] changelog reading sources... [ 22%] contents reading sources... [ 33%] examples reading sources... [ 44%] index reading sources... [ 55%] installation reading sources... [ 66%] intro reading sources... [ 77%] legal reading sources... [ 88%] manual reading sources... [100%] modref /build/pynifti-0.20100607.1/doc/changelog.txt:31: WARNING: Unexpected indentation. /build/pynifti-0.20100607.1/doc/changelog.txt:35: WARNING: Unexpected indentation. /build/pynifti-0.20100607.1/doc/changelog.txt:42: WARNING: Unexpected indentation. /build/pynifti-0.20100607.1/doc/changelog.txt:43: WARNING: Block quote ends without a blank line; unexpected unindent. /build/pynifti-0.20100607.1/doc/installation.txt:75: WARNING: Unknown target name: "rpm-package repositories". looking for now-outdated files... none found pickling environment... done checking consistency... /build/pynifti-0.20100607.1/doc/index.txt: WARNING: document isn't included in any toctree /build/pynifti-0.20100607.1/doc/manual.txt: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 11%] changelog writing output... [ 22%] contents writing output... [ 33%] examples writing output... [ 44%] index /usr/lib/python2.7/dist-packages/sphinx/builders/html.py:1171: RemovedInSphinx20Warning: Now html_sidebars only allows list of sidebar templates as a value. Support for a string value will be removed at Sphinx-2.0. self.add_sidebars(pagename, ctx) writing output... [ 55%] installation writing output... [ 66%] intro writing output... [ 77%] legal writing output... [ 88%] manual writing output... [100%] modref generating indices... genindex py-modindex writing additional pages... search copying images... [100%] pics/fslview_pst.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 7 warnings. The HTML pages are in ../build/html. Build finished. The HTML pages are in ../build/html. make[2]: Leaving directory '/build/pynifti-0.20100607.1/doc' make[1]: Leaving directory '/build/pynifti-0.20100607.1' fakeroot debian/rules binary pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions test -x debian/rules dh_testroot dh_clean -k dh_clean: Compatibility levels before 9 are deprecated (level 5 in use) dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_clean: This feature will be removed in compat 12. dh_installdirs -A dh_installdirs: Compatibility levels before 9 are deprecated (level 5 in use) mkdir -p "." CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 mkdir -p debian/python-module-stampdir set -e; cd . && python setup.py build --build-base="/build/pynifti-0.20100607.1/./build"; running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "nifti._clib" sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext running build_scripts touch debian/python-module-stampdir/python-nifti /usr/bin/make unittest make[1]: Entering directory '/build/pynifti-0.20100607.1' EEEEEEEEEEEEEEEEE....EEE.E ====================================================================== ERROR: testArrayAssign (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 337, in testArrayAssign self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testDTypesSupport (test_fileio.FileIOTests) Check load/cycles with all supported dtypes ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 375, in testDTypesSupport nim.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testDataAccess (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 78, in testDataAccess self.failUnlessEqual(self.nimg.data[0,4,17,42], 435) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testDataOwnership (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 88, in testDataOwnership data_copy = self.nimg.asarray() File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testExtensionsSurvive (test_fileio.FileIOTests) check if extensions actually get safed to the file. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 271, in testExtensionsSurvive self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testFromScratch (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 110, in testFromScratch n.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testIdempotentLoadSaveCycle (test_fileio.FileIOTests) check if file is unchanged by load/save cycle. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 58, in testIdempotentLoadSaveCycle self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testMemoryMapping (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 134, in testMemoryMapping self.nimg.save(self.fp_plain.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testMetaReconstruction (test_fileio.FileIOTests) Check if the meta data gets properly reconstructed during ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 316, in testMetaReconstruction self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testPristineExtensions (test_fileio.FileIOTests) See whether extensions of variable length are loaded properly. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 299, in testPristineExtensions self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testQFormSetting (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 167, in testQFormSetting self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testQFormSetting_fromArray (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 217, in testQFormSetting_fromArray nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testQFormSetting_fromFile (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 178, in testQFormSetting_fromFile self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testUnicodeHandling (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 364, in testUnicodeHandling nim.save(outpath) File "/build/pynifti-0.20100607.1/nifti/image.py", line 156, in save self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testUnicodeLoadSaveCycle (test_fileio.FileIOTests) check load/save cycle for unicode filenames. ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 69, in testUnicodeLoadSaveCycle self.nimg.save( os.path.join( self.workdir, 'üöä.nii.gz') ) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: test_setPixDims (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 231, in test_setPixDims self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: test_setVoxDims (test_fileio.FileIOTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_fileio.py", line 252, in test_setVoxDims self.nimg.save(self.fp.name) File "/build/pynifti-0.20100607.1/nifti/image.py", line 165, in save self.updateCalMinMax() File "/build/pynifti-0.20100607.1/nifti/image.py", line 267, in updateCalMinMax self.raw_nimg.cal_max = float(self.data.max()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testMetaData (test_extensions.NiftiExtensionTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_extensions.py", line 59, in testMetaData nim2 = NiftiImage(nim.data, nim.header) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testArrayAssign (test_misc.MiscTests) Test whether the header is updated correctly when assigning a new ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_misc.py", line 50, in testArrayAssign self.failUnless(nimg.data.shape == alt_array.shape) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testCopying (test_misc.MiscTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_misc.py", line 60, in testCopying n2.data[0,3,4,2] = 543 File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ====================================================================== ERROR: testPickleCycle (test_misc.MiscTests) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/pynifti-0.20100607.1/tests/test_misc.py", line 96, in testPickleCycle self.failUnless((nim.data == nim2.data).all()) File "/build/pynifti-0.20100607.1/nifti/image.py", line 364, in getDataArray return self.asarray(False) File "/build/pynifti-0.20100607.1/nifti/image.py", line 376, in asarray self.load() File "/build/pynifti-0.20100607.1/nifti/image.py", line 241, in load if self._haveImageData(): File "/build/pynifti-0.20100607.1/nifti/image.py", line 231, in _haveImageData return (not self._data == None) ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all() ---------------------------------------------------------------------- Ran 26 tests in 4.332s FAILED (errors=21) make[1]: Leaving directory '/build/pynifti-0.20100607.1' /usr/bin/make htmldoc make[1]: Entering directory '/build/pynifti-0.20100607.1' cd doc && PYTHONPATH=/build/pynifti-0.20100607.1 /usr/bin/make html make[2]: Entering directory '/build/pynifti-0.20100607.1/doc' mkdir -p ../build/html ../build/doctrees sphinx-build -b html -d ../build/doctrees . ../build/html Running Sphinx v1.8.4 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in ../build/html. Build finished. The HTML pages are in ../build/html. make[2]: Leaving directory '/build/pynifti-0.20100607.1/doc' make[1]: Leaving directory '/build/pynifti-0.20100607.1' Adding cdbs dependencies to debian/python-nifti.substvars dh_installdirs -ppython-nifti \ dh_installdirs: Compatibility levels before 9 are deprecated (level 5 in use) set -e; cd . && python setup.py install --root="/build/pynifti-0.20100607.1/debian/python-nifti" --install-layout=deb --no-compile -O0; running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "nifti._clib" sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext running build_scripts running install_lib creating /build/pynifti-0.20100607.1/debian/python-nifti/usr creating /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib creating /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7 creating /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages creating /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/clib.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/imgfx.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/niftiformat.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/nifticlib.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/_clib.so -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/format.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/__init__.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/niftiimage.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/utils.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/image.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti copying build/lib.linux-i686-2.7/nifti/extensions.py -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/nifti running install_scripts creating /build/pynifti-0.20100607.1/debian/python-nifti/usr/bin copying build/scripts.linux-i686-2.7/pynifti_pst -> /build/pynifti-0.20100607.1/debian/python-nifti/usr/bin changing mode of /build/pynifti-0.20100607.1/debian/python-nifti/usr/bin/pynifti_pst to 775 running install_egg_info Writing /build/pynifti-0.20100607.1/debian/python-nifti/usr/lib/python2.7/dist-packages/pynifti-0.20100607.1.egg-info running install_clib customize UnixCCompiler dh_installdocs -ppython-nifti ./TODO build/html dh_installdocs: Compatibility levels before 9 are deprecated (level 5 in use) dh_installexamples -ppython-nifti dh_installexamples: Compatibility levels before 9 are deprecated (level 5 in use) dh_installman -ppython-nifti dh_installman: Compatibility levels before 9 are deprecated (level 5 in use) dh_installinfo -ppython-nifti dh_installinfo: Compatibility levels before 9 are deprecated (level 5 in use) dh_installmenu -ppython-nifti dh_installcron -ppython-nifti dh_systemd_enable -ppython-nifti dh_systemd_enable: Compatibility levels before 9 are deprecated (level 5 in use) dh_installinit -ppython-nifti dh_installinit: Compatibility levels before 9 are deprecated (level 5 in use) dh_installdebconf -ppython-nifti dh_installemacsen -ppython-nifti dh_installcatalogs -ppython-nifti dh_installpam -ppython-nifti dh_installlogrotate -ppython-nifti dh_installlogcheck -ppython-nifti dh_installchangelogs -ppython-nifti ./Changelog dh_installudev -ppython-nifti dh_lintian -ppython-nifti dh_bugfiles -ppython-nifti dh_install -ppython-nifti dh_install: Compatibility levels before 9 are deprecated (level 5 in use) dh_systemd_start -ppython-nifti dh_systemd_start: Compatibility levels before 9 are deprecated (level 5 in use) dh_link -ppython-nifti dh_link: Compatibility levels before 9 are deprecated (level 5 in use) dh_installmime -ppython-nifti dh_installgsettings -ppython-nifti dh_python2 -ppython-nifti I: dh_python2 fs:343: renaming _clib.so to _clib.i386-linux-gnu.so I: dh_python2 tools:114: replacing shebang in debian/python-nifti/usr/bin/pynifti_pst dh_strip -ppython-nifti dh_strip: Compatibility levels before 9 are deprecated (level 5 in use) dh_strip_nondeterminism -ppython-nifti dh_compress -ppython-nifti -X .py -X .html -X .css -X .jpg -X .txt -X .js -X .json -X .rtc -X .par -X .bin -X objects.inv dh_compress: Compatibility levels before 9 are deprecated (level 5 in use) dh_fixperms -ppython-nifti dh_makeshlibs -ppython-nifti dh_makeshlibs: Compatibility levels before 9 are deprecated (level 5 in use) dh_installdeb -ppython-nifti dh_installdeb: Compatibility levels before 9 are deprecated (level 5 in use) dh_perl -ppython-nifti dh_shlibdeps -ppython-nifti dh_shlibdeps: Compatibility levels before 9 are deprecated (level 5 in use) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-nifti/usr/lib/python2.7/dist-packages/nifti/_clib.i386-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_gencontrol -ppython-nifti dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dh_md5sums -ppython-nifti dh_builddeb -ppython-nifti dpkg-deb: building package 'python-nifti-dbgsym' in '../python-nifti-dbgsym_0.20100607.1-4.1_i386.deb'. dpkg-deb: building package 'python-nifti' in '../python-nifti_0.20100607.1-4.1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pynifti_0.20100607.1-4.1_i386.changes dpkg-genchanges: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/12021/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/12021/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12021 and its subdirectories I: Current time: Wed Jul 15 16:41:04 +14 2020 I: pbuilder-time-stamp: 1594780864