I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 31 19:59:06 +14 2021 I: pbuilder-time-stamp: 1627711146 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pymol_2.2.0+dfsg-4.dsc] I: copying [./pymol_2.2.0+dfsg.orig.tar.gz] I: copying [./pymol_2.2.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 2 15:44:11 2019 +14 gpgv: using RSA key 90E2D2C1AD146A1B7EBB891DBBC17EBB1396F2F7 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pymol_2.2.0+dfsg-4.dsc dpkg-source: info: extracting pymol in pymol-2.2.0+dfsg dpkg-source: info: unpacking pymol_2.2.0+dfsg.orig.tar.gz dpkg-source: info: unpacking pymol_2.2.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch dpkg-source: info: applying 50_py3-class-tests.patch dpkg-source: info: applying 60_py3-cmp.patch dpkg-source: info: applying 70_glext-fix.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=a9c47cd7f7b9452bbf3cf1ec82e70c6e LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=18077 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Q2XN2tiLW2/pbuilderrc_5MHB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Q2XN2tiLW2/b2 --logfile b2/build.log pymol_2.2.0+dfsg-4.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash -rwxr-xr-x 1 root root 120676 Mar 1 2019 date -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd -rwxr-xr-x 1 root root 100620 Mar 1 2019 df -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 34532 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln -rwxr-xr-x 1 root root 55400 Jul 27 2018 login -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 10 2019 more -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 31 19:59 sh -> bash lrwxrwxrwx 1 root root 4 Jul 30 04:48 sh.distrib -> dash -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty -rwsr-xr-x 1 root root 71072 Jan 10 2019 su -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch -rwxr-xr-x 1 root root 34532 Mar 1 2019 true -rwxr-xr-x 1 root root 17768 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/18077/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libpng-dev, python, python-dev, python-numpy, python-opengl, python-pyqt5, python-pyqt5.qtopengl, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freeglut3-dev; however: Package freeglut3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreetype6-dev; however: Package libfreetype6-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew1.5-dev; however: Package libglew1.5-dev is not installed. pbuilder-satisfydepends-dummy depends on libglm-dev; however: Package libglm-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-opengl; however: Package python-opengl is not installed. pbuilder-satisfydepends-dummy depends on python-pyqt5; however: Package python-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python-pyqt5.qtopengl; however: Package python-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-opengl; however: Package python3-opengl is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5; however: Package python3-pyqt5 is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however: Package python3-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} freeglut3{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdbus-1-3{a} libdouble-conversion1{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfreetype6-dev{a} libgbm1{a} libgfortran5{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl1-mesa-glx{a} libglapi-mesa{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.1{a} libglib2.0-0{a} libglm-dev{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu63{a} libidn11{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libllvm7{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libmtdev1{a} libncurses6{a} libopengl0{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} libreadline7{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-util0{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb-xinerama0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxt-dev{a} libxt6{a} libxxf86vm-dev{a} libxxf86vm1{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mesa-common-dev{a} mime-support{a} po-debconf{a} poppler-data{a} python{a} python-dev{a} python-enum34{a} python-minimal{a} python-numpy{a} python-opengl{a} python-pkg-resources{a} python-pyqt5{a} python-pyqt5.qtopengl{a} python-sip{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-opengl{a} python3-pkg-resources{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-sip{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus fonts-droid-fallback krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libwacom-bin libx11-protocol-perl lmodern lynx qt5-gtk-platformtheme qttranslations5-l10n shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 284 newly installed, 0 to remove and 0 not upgraded. Need to get 241 MB of archives. After unpacking 883 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2+deb10u1 [1381 kB] Get: 9 http://deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2+deb10u1 [1934 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 poppler-data all 0.4.9-2 [1473 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB] Get: 24 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB] Get: 25 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB] Get: 28 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 33 http://deb.debian.org/debian buster/main i386 tex-common all 6.11 [53.1 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 36 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 37 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 39 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 40 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 41 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 42 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 43 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 45 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 48 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 50 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 56 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 57 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 61 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 62 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB] Get: 65 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 66 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 67 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 68 http://deb.debian.org/debian buster/main i386 fontconfig i386 2.13.1-2 [405 kB] Get: 69 http://deb.debian.org/debian buster/main i386 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB] Get: 71 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 74 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB] Get: 79 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB] Get: 80 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1 [190 kB] Get: 81 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB] Get: 82 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB] Get: 83 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB] Get: 84 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB] Get: 86 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 89 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB] Get: 91 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 92 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB] Get: 93 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB] Get: 94 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB] Get: 95 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8 [13.0 MB] Get: 97 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 98 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB] Get: 99 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB] Get: 100 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB] Get: 102 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libgl1-mesa-glx i386 18.3.6-2+deb10u1 [47.4 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB] Get: 105 http://deb.debian.org/debian buster/main i386 freeglut3 i386 2.8.1-3 [123 kB] Get: 106 http://deb.debian.org/debian buster/main i386 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 107 http://deb.debian.org/debian buster/main i386 x11proto-dev all 2018.4-4 [251 kB] Get: 108 http://deb.debian.org/debian buster/main i386 x11proto-core-dev all 2018.4-4 [3128 B] Get: 109 http://deb.debian.org/debian buster/main i386 libxau-dev i386 1:1.0.8-1+b2 [23.6 kB] Get: 110 http://deb.debian.org/debian buster/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get: 111 http://deb.debian.org/debian buster/main i386 xtrans-dev all 1.3.5-1 [100 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get: 113 http://deb.debian.org/debian buster/main i386 libxcb1-dev i386 1.13.1-2 [180 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libx11-dev i386 2:1.6.7-1 [856 kB] Get: 115 http://deb.debian.org/debian buster/main i386 libdrm-dev i386 2.4.97-1 [131 kB] Get: 116 http://deb.debian.org/debian buster/main i386 mesa-common-dev i386 18.3.6-2+deb10u1 [611 kB] Get: 117 http://deb.debian.org/debian buster/main i386 libglvnd-core-dev i386 1.1.0-1 [13.2 kB] Get: 118 http://deb.debian.org/debian buster/main i386 libwayland-server0 i386 1.16.0-1 [33.7 kB] Get: 119 http://deb.debian.org/debian buster/main i386 libgbm1 i386 18.3.6-2+deb10u1 [69.5 kB] Get: 120 http://deb.debian.org/debian buster/main i386 libwayland-client0 i386 1.16.0-1 [27.0 kB] Get: 121 http://deb.debian.org/debian buster/main i386 libxcb-xfixes0 i386 1.13.1-2 [103 kB] Get: 122 http://deb.debian.org/debian buster/main i386 libegl-mesa0 i386 18.3.6-2+deb10u1 [143 kB] Get: 123 http://deb.debian.org/debian buster/main i386 libegl1 i386 1.1.0-1 [35.3 kB] Get: 124 http://deb.debian.org/debian buster/main i386 libgles1 i386 1.1.0-1 [13.9 kB] Get: 125 http://deb.debian.org/debian buster/main i386 libgles2 i386 1.1.0-1 [18.8 kB] Get: 126 http://deb.debian.org/debian buster/main i386 libopengl0 i386 1.1.0-1 [31.0 kB] Get: 127 http://deb.debian.org/debian buster/main i386 libglvnd-dev i386 1.1.0-1 [5128 B] Get: 128 http://deb.debian.org/debian buster/main i386 libx11-xcb-dev i386 2:1.6.7-1 [192 kB] Get: 129 http://deb.debian.org/debian buster/main i386 libxcb-dri3-dev i386 1.13.1-2 [101 kB] Get: 130 http://deb.debian.org/debian buster/main i386 libxcb-randr0 i386 1.13.1-2 [112 kB] Get: 131 http://deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 132 http://deb.debian.org/debian buster/main i386 libxcb-render0-dev i386 1.13.1-2 [113 kB] Get: 133 http://deb.debian.org/debian buster/main i386 libxcb-randr0-dev i386 1.13.1-2 [116 kB] Get: 134 http://deb.debian.org/debian buster/main i386 libxcb-shape0 i386 1.13.1-2 [99.7 kB] Get: 135 http://deb.debian.org/debian buster/main i386 libxcb-shape0-dev i386 1.13.1-2 [101 kB] Get: 136 http://deb.debian.org/debian buster/main i386 libxcb-xfixes0-dev i386 1.13.1-2 [106 kB] Get: 137 http://deb.debian.org/debian buster/main i386 libxcb-sync-dev i386 1.13.1-2 [105 kB] Get: 138 http://deb.debian.org/debian buster/main i386 libxcb-present-dev i386 1.13.1-2 [101 kB] Get: 139 http://deb.debian.org/debian buster/main i386 libxshmfence-dev i386 1.3-1 [8560 B] Get: 140 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0-dev i386 1.13.1-2 [102 kB] Get: 141 http://deb.debian.org/debian buster/main i386 libxcb-glx0-dev i386 1.13.1-2 [123 kB] Get: 142 http://deb.debian.org/debian buster/main i386 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 143 http://deb.debian.org/debian buster/main i386 libxfixes-dev i386 1:5.0.3-1 [24.3 kB] Get: 144 http://deb.debian.org/debian buster/main i386 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 145 http://deb.debian.org/debian buster/main i386 libxdamage-dev i386 1:1.1.4-3+b3 [14.9 kB] Get: 146 http://deb.debian.org/debian buster/main i386 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 147 http://deb.debian.org/debian buster/main i386 libxext-dev i386 2:1.3.3-1+b2 [110 kB] Get: 148 http://deb.debian.org/debian buster/main i386 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get: 149 http://deb.debian.org/debian buster/main i386 libxxf86vm-dev i386 1:1.1.4-1+b2 [26.3 kB] Get: 150 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dev i386 18.3.6-2+deb10u1 [48.0 kB] Get: 151 http://deb.debian.org/debian buster/main i386 libglu1-mesa i386 9.0.0-2.1+b3 [179 kB] Get: 152 http://deb.debian.org/debian buster/main i386 libglu1-mesa-dev i386 9.0.0-2.1+b3 [223 kB] Get: 153 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 154 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 155 http://deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 156 http://deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 157 http://deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB] Get: 158 http://deb.debian.org/debian buster/main i386 libice-dev i386 2:1.0.9-2 [70.2 kB] Get: 159 http://deb.debian.org/debian buster/main i386 libsm-dev i386 2:1.2.3-1 [38.8 kB] Get: 160 http://deb.debian.org/debian buster/main i386 libxt-dev i386 1:1.1.5-1+b3 [439 kB] Get: 161 http://deb.debian.org/debian buster/main i386 freeglut3-dev i386 2.8.1-3 [182 kB] Get: 162 http://deb.debian.org/debian buster/main i386 icu-devtools i386 63.1-6+deb10u1 [196 kB] Get: 163 http://deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB] Get: 164 http://deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB] Get: 165 http://deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.16-1 [226 kB] Get: 166 http://deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB] Get: 167 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 168 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 169 http://deb.debian.org/debian buster/main i386 libbrotli1 i386 1.0.7-2 [267 kB] Get: 170 http://deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 171 http://deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 172 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 173 http://deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 174 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 175 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 176 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 177 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 178 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 179 http://deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6+deb10u3 [338 kB] Get: 180 http://deb.debian.org/debian buster/main i386 libcupsimage2 i386 2.2.10-6+deb10u3 [133 kB] Get: 181 http://deb.debian.org/debian buster/main i386 libdouble-conversion1 i386 3.1.0-3 [43.3 kB] Get: 182 http://deb.debian.org/debian buster/main i386 libevdev2 i386 1.6.0+dfsg-1 [29.8 kB] Get: 183 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] Get: 184 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 185 http://deb.debian.org/debian buster/main i386 libpng-dev i386 1.6.36-6 [310 kB] Get: 186 http://deb.debian.org/debian buster/main i386 libfreetype6-dev i386 2.9.1-3+deb10u1 [565 kB] Get: 187 http://deb.debian.org/debian buster/main i386 libglew2.1 i386 2.1.0-4 [154 kB] Get: 188 http://deb.debian.org/debian buster/main i386 libglew-dev i386 2.1.0-4 [141 kB] Get: 189 http://deb.debian.org/debian buster/main i386 libglm-dev all 0.9.9.3-2 [175 kB] Get: 190 http://deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 191 http://deb.debian.org/debian buster/main i386 libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 192 http://deb.debian.org/debian buster/main i386 libidn11 i386 1.33-2.2 [116 kB] Get: 193 http://deb.debian.org/debian buster/main i386 libijs-0.35 i386 0.35-14 [18.9 kB] Get: 194 http://deb.debian.org/debian buster/main i386 libjbig2dec0 i386 0.16-1 [64.6 kB] Get: 195 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 196 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB] Get: 197 http://deb.debian.org/debian buster/main i386 libopenjp2-7 i386 2.3.0-2+deb10u1 [164 kB] Get: 198 http://deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.28 [21.4 kB] Get: 199 http://deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 200 http://deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 201 http://deb.debian.org/debian buster/main i386 libtiff5 i386 4.1.0+git191117-2~deb10u1 [284 kB] Get: 202 http://deb.debian.org/debian buster/main i386 libgs9 i386 9.27~dfsg-2+deb10u3 [2300 kB] Get: 203 http://deb.debian.org/debian buster/main i386 libgudev-1.0-0 i386 232-2 [14.2 kB] Get: 204 http://deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 205 http://deb.debian.org/debian buster/main i386 libharfbuzz-icu0 i386 2.3.1-1 [834 kB] Get: 206 http://deb.debian.org/debian buster/main i386 libicu-dev i386 63.1-6+deb10u1 [9377 kB] Get: 207 http://deb.debian.org/debian buster/main i386 libwacom-common all 0.32-1 [39.1 kB] Get: 208 http://deb.debian.org/debian buster/main i386 libwacom2 i386 0.32-1 [20.0 kB] Get: 209 http://deb.debian.org/debian buster/main i386 libinput-bin i386 1.12.6-2 [16.9 kB] Get: 210 http://deb.debian.org/debian buster/main i386 libmtdev1 i386 1.1.5-1+b1 [22.9 kB] Get: 211 http://deb.debian.org/debian buster/main i386 libinput10 i386 1.12.6-2 [118 kB] Get: 212 http://deb.debian.org/debian buster/main i386 libkpathsea6 i386 2018.20181218.49446-1 [171 kB] Get: 213 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 214 http://deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.28 [18.3 kB] Get: 215 http://deb.debian.org/debian buster/main i386 libpcre2-16-0 i386 10.32-5 [203 kB] Get: 216 http://deb.debian.org/debian buster/main i386 libpotrace0 i386 1.15-1 [25.6 kB] Get: 217 http://deb.debian.org/debian buster/main i386 libptexenc1 i386 2018.20181218.49446-1 [61.6 kB] Get: 218 http://deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2+deb10u1 [1059 kB] Get: 219 http://deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2+deb10u1 [31.4 MB] Get: 220 http://deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] Get: 221 http://deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] Get: 222 http://deb.debian.org/debian buster/main i386 libpython3.7 i386 3.7.3-2+deb10u1 [1506 kB] Get: 223 http://deb.debian.org/debian buster/main i386 libpython3.7-dev i386 3.7.3-2+deb10u1 [47.7 MB] Get: 224 http://deb.debian.org/debian buster/main i386 libpython3-dev i386 3.7.3-1 [20.2 kB] Get: 225 http://deb.debian.org/debian buster/main i386 libpython3-all-dev i386 3.7.3-1 [1068 B] Get: 226 http://deb.debian.org/debian buster/main i386 libqt5core5a i386 5.11.3+dfsg1-1+deb10u3 [2510 kB] Get: 227 http://deb.debian.org/debian buster/main i386 libqt5dbus5 i386 5.11.3+dfsg1-1+deb10u3 [258 kB] Get: 228 http://deb.debian.org/debian buster/main i386 libqt5network5 i386 5.11.3+dfsg1-1+deb10u3 [763 kB] Get: 229 http://deb.debian.org/debian buster/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB] Get: 230 http://deb.debian.org/debian buster/main i386 libxcb-util0 i386 0.3.8-3+b2 [23.3 kB] Get: 231 http://deb.debian.org/debian buster/main i386 libxcb-image0 i386 0.4.0-1+b2 [24.8 kB] Get: 232 http://deb.debian.org/debian buster/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB] Get: 233 http://deb.debian.org/debian buster/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB] Get: 234 http://deb.debian.org/debian buster/main i386 libxcb-xinerama0 i386 1.13.1-2 [99.0 kB] Get: 235 http://deb.debian.org/debian buster/main i386 libxcb-xkb1 i386 1.13.1-2 [126 kB] Get: 236 http://deb.debian.org/debian buster/main i386 xkb-data all 2.26-2 [681 kB] Get: 237 http://deb.debian.org/debian buster/main i386 libxkbcommon0 i386 0.8.2-1 [128 kB] Get: 238 http://deb.debian.org/debian buster/main i386 libxkbcommon-x11-0 i386 0.8.2-1 [40.5 kB] Get: 239 http://deb.debian.org/debian buster/main i386 libqt5gui5 i386 5.11.3+dfsg1-1+deb10u3 [4844 kB] Get: 240 http://deb.debian.org/debian buster/main i386 libqt5widgets5 i386 5.11.3+dfsg1-1+deb10u3 [2537 kB] Get: 241 http://deb.debian.org/debian buster/main i386 libqt5xml5 i386 5.11.3+dfsg1-1+deb10u3 [138 kB] Get: 242 http://deb.debian.org/debian buster/main i386 libqt5designer5 i386 5.11.3-4 [2907 kB] Get: 243 http://deb.debian.org/debian buster/main i386 libqt5sql5 i386 5.11.3+dfsg1-1+deb10u3 [157 kB] Get: 244 http://deb.debian.org/debian buster/main i386 libqt5help5 i386 5.11.3-4 [170 kB] Get: 245 http://deb.debian.org/debian buster/main i386 libqt5opengl5 i386 5.11.3+dfsg1-1+deb10u3 [173 kB] Get: 246 http://deb.debian.org/debian buster/main i386 libqt5printsupport5 i386 5.11.3+dfsg1-1+deb10u3 [234 kB] Get: 247 http://deb.debian.org/debian buster/main i386 libqt5test5 i386 5.11.3+dfsg1-1+deb10u3 [157 kB] Get: 248 http://deb.debian.org/debian buster/main i386 libsynctex2 i386 2018.20181218.49446-1 [83.5 kB] Get: 249 http://deb.debian.org/debian buster/main i386 libteckit0 i386 2.5.8+ds2-5 [268 kB] Get: 250 http://deb.debian.org/debian buster/main i386 libtexlua52 i386 2018.20181218.49446-1 [121 kB] Get: 251 http://deb.debian.org/debian buster/main i386 libtexlua53 i386 2018.20181218.49446-1 [141 kB] Get: 252 http://deb.debian.org/debian buster/main i386 libtexluajit2 i386 2018.20181218.49446-1 [270 kB] Get: 253 http://deb.debian.org/debian buster/main i386 libwoff1 i386 1.0.2-1 [46.0 kB] Get: 254 http://deb.debian.org/debian buster/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 255 http://deb.debian.org/debian buster/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 256 http://deb.debian.org/debian buster/main i386 libxaw7 i386 2:1.0.13-1+b2 [209 kB] Get: 257 http://deb.debian.org/debian buster/main i386 libxml2-dev i386 2.9.4+dfsg1-7+b3 [843 kB] Get: 258 http://deb.debian.org/debian buster/main i386 libxxhash0 i386 0.6.5-2 [8788 B] Get: 259 http://deb.debian.org/debian buster/main i386 libzzip-0-13 i386 0.13.62-3.2 [57.3 kB] Get: 260 http://deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2+deb10u1 [295 kB] Get: 261 http://deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] Get: 262 http://deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] Get: 263 http://deb.debian.org/debian buster/main i386 python-enum34 all 1.1.6-2 [35.3 kB] Get: 264 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 265 http://deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] Get: 266 http://deb.debian.org/debian buster/main i386 python-opengl all 3.1.0+dfsg-2 [490 kB] Get: 267 http://deb.debian.org/debian buster/main i386 python-sip i386 4.19.14+dfsg-2 [171 kB] Get: 268 http://deb.debian.org/debian buster/main i386 python-pyqt5 i386 5.11.3+dfsg-1+b3 [2002 kB] Get: 269 http://deb.debian.org/debian buster/main i386 python-pyqt5.qtopengl i386 5.11.3+dfsg-1+b3 [165 kB] Get: 270 http://deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] Get: 271 http://deb.debian.org/debian buster/main i386 python3.7-dev i386 3.7.3-2+deb10u1 [509 kB] Get: 272 http://deb.debian.org/debian buster/main i386 python3-dev i386 3.7.3-1 [1260 B] Get: 273 http://deb.debian.org/debian buster/main i386 python3-all-dev i386 3.7.3-1 [1068 B] Get: 274 http://deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 275 http://deb.debian.org/debian buster/main i386 python3-numpy i386 1:1.16.2-1 [2115 kB] Get: 276 http://deb.debian.org/debian buster/main i386 python3-opengl all 3.1.0+dfsg-2 [491 kB] Get: 277 http://deb.debian.org/debian buster/main i386 python3-sip i386 4.19.14+dfsg-2 [172 kB] Get: 278 http://deb.debian.org/debian buster/main i386 python3-pyqt5 i386 5.11.3+dfsg-1+b3 [2143 kB] Get: 279 http://deb.debian.org/debian buster/main i386 python3-pyqt5.qtopengl i386 5.11.3+dfsg-1+b3 [169 kB] Get: 280 http://deb.debian.org/debian buster/main i386 t1utils i386 1.41-3 [62.2 kB] Get: 281 http://deb.debian.org/debian buster/main i386 texlive-binaries i386 2018.20181218.49446-1 [11.2 MB] Get: 282 http://deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 283 http://deb.debian.org/debian buster/main i386 texlive-base all 2018.20190227-2 [19.7 MB] Get: 284 http://deb.debian.org/debian buster/main i386 texlive-latex-base all 2018.20190227-2 [984 kB] Fetched 241 MB in 5s (51.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_i386.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_i386.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../14-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:i386. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_i386.deb ... Unpacking libpython2-stdlib:i386 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20699 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_i386.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20732 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_i386.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package libpython3.7-minimal:i386. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u1_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.3-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u1_i386.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u1) ... Setting up libssl1.1:i386 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:i386 (3.7.3-2+deb10u1) ... Setting up libexpat1:i386 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21504 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:i386. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u1_i386.deb ... Unpacking libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u1_i386.deb ... Unpacking python3.7 (3.7.3-2+deb10u1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../libpython3-stdlib_3.7.3-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21916 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_i386.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../002-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../003-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../008-libsigsegv2_2.12-2_i386.deb ... 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Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up libzzip-0-13:i386 (0.13.62-3.2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libpthread-stubs0-dev:i386 (0.4-1) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libpcre2-16-0:i386 (10.32-5) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up libopengl0:i386 (1.1.0-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libgles2:i386 (1.1.0-1) ... Setting up libexpat1-dev:i386 (2.2.6-2+deb10u1) ... 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Setting up libreadline7:i386 (7.0-5) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:i386 (0.8.2-1) ... Setting up libpotrace0:i386 (1.15-1) ... Setting up libwayland-client0:i386 (1.16.0-1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libxcb-xfixes0:i386 (1.13.1-2) ... Setting up libxau-dev:i386 (1:1.0.8-1+b2) ... Setting up libwoff1:i386 (1.0.2-1) ... Setting up libice-dev:i386 (2:1.0.9-2) ... Setting up libpython3.7:i386 (3.7.3-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libxshmfence-dev:i386 (1.3-1) ... Setting up libpython3.7-dev:i386 (3.7.3-2+deb10u1) ... Setting up libxcb-glx0:i386 (1.13.1-2) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up libpng-dev:i386 (1.6.36-6) ... Setting up libxcb-keysyms1:i386 (0.4.0-1+b2) ... Setting up libxcb-shape0:i386 (1.13.1-2) ... Setting up libavahi-common3:i386 (0.7-4+b1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:i386 (0.3.9-1+b1) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libxcb-icccm4:i386 (0.4.1-1.1) ... Setting up libxcb-util0:i386 (0.3.8-3+b2) ... Setting up libxcb-xkb1:i386 (1.13.1-2) ... Setting up libxcb-image0:i386 (0.4.0-1+b2) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Setting up libxcb-present0:i386 (1.13.1-2) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libxml2-dev:i386 (2.9.4+dfsg1-7+b3) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libxcb-xinerama0:i386 (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libptexenc1:i386 (2018.20181218.49446-1) ... Setting up libfreetype6:i386 (2.9.1-3+deb10u1) ... Setting up libxcb-sync1:i386 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:i386 (0.8.2-1) ... Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libqt5core5a:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:i386 (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:i386 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libxcb-randr0:i386 (1.13.1-2) ... Setting up libllvm7:i386 (1:7.0.1-8) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libharfbuzz0b:i386 (2.3.1-1) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libqt5test5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libwacom2:i386 (0.32-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.7-4+b1) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up libdrm-amdgpu1:i386 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.13.1-2) ... Setting up libpaper1:i386 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libpython2.7:i386 (2.7.16-2+deb10u1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libpython2.7-dev:i386 (2.7.16-2+deb10u1) ... Setting up libdrm-nouveau2:i386 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:i386 (2.3.1-1) ... Setting up libpython3-dev:i386 (3.7.3-1) ... Setting up libxcb1-dev:i386 (1.13.1-2) ... Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libgbm1:i386 (18.3.6-2+deb10u1) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up libsm-dev:i386 (2:1.2.3-1) ... Setting up libdrm-radeon1:i386 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:i386 (2.4.97-1) ... Setting up libgl1-mesa-dri:i386 (18.3.6-2+deb10u1) ... Setting up libx11-dev:i386 (2:1.6.7-1) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:i386 (1.13.1-2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u1) ... Setting up libqt5network5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libfreetype6-dev:i386 (2.9.1-3+deb10u1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up libqt5xml5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libegl-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libxcb-dri2-0-dev:i386 (1.13.1-2) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libpython3-all-dev:i386 (3.7.3-1) ... Setting up libxcb-render0-dev:i386 (1.13.1-2) ... Setting up libxcb-glx0-dev:i386 (1.13.1-2) ... Setting up libxt6:i386 (1:1.1.5-1+b3) ... Setting up libxcb-shape0-dev:i386 (1.13.1-2) ... Setting up libxext-dev:i386 (2:1.3.3-1+b2) ... Setting up libcups2:i386 (2.2.10-6+deb10u3) ... Setting up libegl1:i386 (1.1.0-1) ... Setting up libxcb-sync-dev:i386 (1.13.1-2) ... Setting up libpython2-dev:i386 (2.7.16-1) ... Setting up libxcb-xfixes0-dev:i386 (1.13.1-2) ... Setting up libfontconfig1:i386 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-sip (4.19.14+dfsg-2) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up libinput10:i386 (1.12.6-2) ... Setting up python-enum34 (1.1.6-2) ... Setting up libx11-xcb-dev:i386 (2:1.6.7-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libdrm-dev:i386 (2.4.97-1) ... Setting up libxmu6:i386 (2:1.1.2-2+b3) ... Setting up libxdamage1:i386 (1:1.1.4-3+b3) ... Setting up python2-dev (2.7.16-1) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:i386 (1:1.1.4-1+b2) ... Setting up python3-all (3.7.3-1) ... Setting up libxaw7:i386 (2:1.0.13-1+b2) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up libcupsimage2:i386 (2.2.10-6+deb10u3) ... Setting up libpython-dev:i386 (2.7.16-1) ... Setting up libxfixes-dev:i386 (1:5.0.3-1) ... Setting up libxcb-randr0-dev:i386 (1.13.1-2) ... Setting up libxt-dev:i386 (1:1.1.5-1+b3) ... Setting up libxcb-present-dev:i386 (1.13.1-2) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up mesa-common-dev:i386 (18.3.6-2+deb10u1) ... Setting up python-sip (4.19.14+dfsg-2) ... Setting up python-dev (2.7.16-1) ... Setting up libxdamage-dev:i386 (1:1.1.4-3+b3) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libglx-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libgs9:i386 (9.27~dfsg-2+deb10u3) ... Setting up libglx0:i386 (1.1.0-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up libgl1:i386 (1.1.0-1) ... Setting up libgl1-mesa-glx:i386 (18.3.6-2+deb10u1) ... Setting up libglew2.1:i386 (2.1.0-4) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libglu1-mesa:i386 (9.0.0-2.1+b3) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up freeglut3:i386 (2.8.1-3) ... Setting up python-opengl (3.1.0+dfsg-2) ... Setting up libqt5gui5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libglvnd-dev:i386 (1.1.0-1) ... Setting up libqt5widgets5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up python3-opengl (3.1.0+dfsg-2) ... Setting up libqt5help5:i386 (5.11.3-4) ... Setting up libqt5printsupport5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up libqt5opengl5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libgl1-mesa-dev:i386 (18.3.6-2+deb10u1) ... Setting up libqt5designer5:i386 (5.11.3-4) ... Setting up python-pyqt5 (5.11.3+dfsg-1+b3) ... Setting up libglu1-mesa-dev:i386 (9.0.0-2.1+b3) ... Setting up python3-pyqt5 (5.11.3+dfsg-1+b3) ... Setting up python3-pyqt5.qtopengl (5.11.3+dfsg-1+b3) ... Setting up freeglut3-dev:i386 (2.8.1-3) ... Setting up libglew-dev:i386 (2.1.0-4) ... Setting up python-pyqt5.qtopengl (5.11.3+dfsg-1+b3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/pymol-2.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.2.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stuart Prescott dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/pymol-2.2.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' debian/rules build dh build --with python2,python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build --pyqt PyQt5 running build running build_py creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-i386-2.7 creating build/temp.linux-i386-2.7/build creating build/temp.linux-i386-2.7/build/generated creating build/temp.linux-i386-2.7/contrib creating build/temp.linux-i386-2.7/contrib/uiuc creating build/temp.linux-i386-2.7/contrib/uiuc/plugins creating build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-i386-2.7/layer0 creating build/temp.linux-i386-2.7/layer1 creating build/temp.linux-i386-2.7/layer2 creating build/temp.linux-i386-2.7/layer3 creating build/temp.linux-i386-2.7/layer4 creating build/temp.linux-i386-2.7/layer5 creating build/temp.linux-i386-2.7/modules creating build/temp.linux-i386-2.7/modules/cealign creating build/temp.linux-i386-2.7/modules/cealign/src creating build/temp.linux-i386-2.7/ov creating build/temp.linux-i386-2.7/ov/src i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-i386-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(ok) { ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return ok; ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] int i, numatoms; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static qmdata_t* init_qmdata() { ^~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static qmdata_t* init_qmdata() { ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Ene= %f\n", &orbenergy); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Spin= %s\n", spin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Occup= %f\n", &occu); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] sprintf(atom->resname, "%d", resid); ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] sprintf(atom->resname, "%d", resid); ^~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Box[0], &prm->Box[1], &prm->Box[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natcap, &prm->Cutcap, ~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Xcap, &prm->Ycap, &prm->Zcap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(int), 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (str, len, 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 8, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // skip second header line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:141:32: warning: function declaration isn't a prototype [-Wstrict-prototypes] static abinit_binary_header_t *abinit_header_malloc() ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:154:29: warning: function declaration isn't a prototype [-Wstrict-prototypes] static abinit_plugindata_t *abinit_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(skip, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: function declaration isn't a prototype [-Wstrict-prototypes] static qmdata_t* init_qmdata() { ^~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "%FLAG" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,parm7, ~~~~~~^~~~~~~~~~~~ &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Jparm, &prm->Nparm); ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, ~~~~~~^~~~~~~~~~~~~ &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natyp, &prm->Nphb); ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] sprintf(data->basis_string, "%d-%s%sG%s", ^~ ngauss, (data->gbasis+1), diffuse, ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] sprintf(data->basis_string, "STO-%dG%s%s", ^~ ngauss, diffuse, polarization); ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-i386-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-i386-2.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-i386-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:46: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-i386-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-i386-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-i386-2.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-i386-2.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); //one more read to keep us in sync ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:39: contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:44:27: warning: function declaration isn't a prototype [-Wstrict-prototypes] static vasp_plugindata_t *vasp_plugindata_malloc() ^~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] strncpy(tmptype, atom->type, sizeof(atom->type)); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-i386-2.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-i386-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-i386-2.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-i386-2.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-i386-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-i386-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-i386-2.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", ^~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-i386-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-i386-2.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-i386-2.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-i386-2.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-i386-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-i386-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-i386-2.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-i386-2.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-i386-2.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-i386-2.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-i386-2.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-i386-2.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-i386-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-i386-2.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(answer, "%03x/", d1); ^~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] sprintf(answer, "%03x/%03x/", d1, d2); ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-i386-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(sub, "%03x/", i); ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(subsub, "%03x", j); ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-i386-2.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-i386-2.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-i386-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-i386-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-i386-2.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-i386-2.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-i386-2.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-i386-2.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-i386-2.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-i386-2.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-i386-2.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-i386-2.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-i386-2.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-i386-2.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-i386-2.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-i386-2.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-i386-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/PConv.cpp:38: warning: "PyString_Check" redefined #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) In file included from /usr/include/python2.7/Python.h:97, from layer0/os_python.h:34, from layer1/PConv.cpp:17: /usr/include/python2.7/stringobject.h:58: note: this is the location of the previous definition #define PyString_Check(op) \ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-i386-2.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-i386-2.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-i386-2.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'int MovieRelease(Block*, int, int, int, int)': layer1/Movie.cpp:1755:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=] sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 + min_frame, 1 + max_frame, extra); ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 34 and 1077 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1741:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 989 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mcopy(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1060 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1770:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mdelete(%d,%d%s)", I->DragStartFrame - I->DragCurFrame, first+1, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1766:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.minsert(%d,%d%s)", I->DragCurFrame - I->DragStartFrame, first, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1727:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 990 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mmove(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1059 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-i386-2.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:803:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] " MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 1060 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-i386-2.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-i386-2.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-i386-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-i386-2.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-i386-2.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-i386-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)': layer1/Scene.cpp:4103:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4103:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3971:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3971:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3988:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3988:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~ layer1/Scene.cpp:3996:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:3996:22: note: 'sprintf' output between 16 and 2062 bytes into a destination of size 1024 sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3856:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 24 and 1047 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3856:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3862:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:3862:24: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3891:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3891:17: note: in expansion of macro 'PRINTF' PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3904:50: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:262:98: note: 'snprintf' output between 21 and 1299 bytes into a destination of size 255 #define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; if(Feedback(G,sysmod,mask)) {(snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3904:17: note: in expansion of macro 'PRINTFB' PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~ layer1/Scene.cpp:4162:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4162:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4196:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4196:22: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4187:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4187:22: note: 'sprintf' output between 21 and 1044 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4247:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4247:31: note: directive argument in the range [-2147483647, 2147483647] layer1/Scene.cpp:4247:22: note: 'sprintf' output between 23 and 1056 bytes into a destination of size 1024 sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4218:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.origin(\"%s\")", buf1); ^~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4218:24: note: 'sprintf' output between 15 and 1038 bytes into a destination of size 1024 sprintf(buffer, "cmd.origin(\"%s\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4225:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4225:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4312:29: warning: ')' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ^~~~~~~~ layer1/Scene.cpp:4312:22: note: 'sprintf' output 3 or more bytes (assuming 1026) into a destination of size 1024 sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4319:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ layer1/Scene.cpp:4319:26: note: 'sprintf' output 20 or more bytes (assuming 1298) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~~ layer1/Scene.cpp:4294:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4294:22: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4303:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4303:26: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4306:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~ layer1/Scene.cpp:4306:26: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4271:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ^~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:4271:20: note: 'sprintf' output 5 or more bytes (assuming 1028) into a destination of size 1024 sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4282:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~ layer1/Scene.cpp:4282:24: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-i386-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-i386-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-i386-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-i386-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-i386-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-i386-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-i386-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] "Transform {\n" ^~~~~~~~~~~~~~~ " translation %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " rotation %8.6f %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " children [\n" ~~~~~~~~~~~~~~~ "%s" ~~~~ " ]\n" ~~~~~~ "}\n", ~~~~~ layer1/Ray.cpp:1558:72: vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer1/Ray.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-i386-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-i386-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-i386-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-i386-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-i386-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-i386-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-i386-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-i386-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-i386-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-i386-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-i386-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)': layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:1543:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-i386-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-i386-2.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:8024:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 289 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-i386-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-i386-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-i386-2.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-i386-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-i386-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-i386-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-i386-2.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-i386-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-i386-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-i386-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-i386-2.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-i386-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-i386-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-i386-2.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-i386-2.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-i386-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-i386-2.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-i386-2.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-i386-2.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-i386-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-i386-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-i386-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)': layer2/ObjectMolecule.cpp:11416:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer, v[0], v[1], v[2], state + 1, mode, 0); ~~~~~~ layer2/ObjectMolecule.cpp:11416:21: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-i386-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-i386-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)': layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0); ~~~~ layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 4124 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-i386-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)': layer3/Editor.cpp:1027:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s2, s2); ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 37 and 2083 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-i386-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-i386-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-i386-2.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)': layer3/Editor.cpp:1903:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Editor: grabbing (%s).", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 22 and 277 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] sprintf(buffer, "(byres %s)", name); ^~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 264 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:340:21: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] sprintf(buffer, "(bychain %s)", name); ^~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 266 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:342:21: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] sprintf(buffer, "(byobject %s)", name); ^~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-i386-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-i386-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-i386-2.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9655:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] " Remove: eliminated %d atoms in model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 307 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)': layer3/Executive.cpp:10004:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 314 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:9991:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 35 and 300 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:10016:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] " Unbond: %d bonds removed from model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 41 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-i386-2.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12098:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12098:17: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:12181:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Getting: %s for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12181:8: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 38 and 556 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12283:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12283:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12302:7: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is not a bond-level setting\n", name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12359:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s unset for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, rec->obj->Name ENDF(G); ~~~~ layer3/Executive.cpp:12359:15: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 44 and 562 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)': layer3/Executive.cpp:12597:9: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(G, index) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 296) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12453:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12450:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12450:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12574:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12574:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12567:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12409:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char *myArgv[8] = {"pymol"}; ^ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-i386-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12759:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12756:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12756:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12791:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12823:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12823:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12815:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12719:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)': layer3/Executive.cpp:12888:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12888:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12880:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12859:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)': layer3/Executive.cpp:12998:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] " Setting: %s unset for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 299) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 41 or more bytes (assuming 305) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13017:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 32 or more bytes (assuming 287) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-i386-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-i386-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-i386-2.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-i386-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveDrag(Block*, int, int, int)': layer3/Executive.cpp:16050:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order_input, (location == -2) ? "upper" : "current"); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 1057 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-i386-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=] "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer5/PyMOL.cpp:2856:70: ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer5/PyMOL.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15045:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: object \"%s\" created.\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 32 and 287 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15053:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 61 and 316 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15059:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 73 and 328 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)': layer3/Executive.cpp:2302:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 546 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetName(PyMOLGlobals*, const char*, const char*)': layer3/Executive.cpp:3561:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 234 [-Wformat-truncation=] "SetName-Error: name '%s' is a selection keyword.\n", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 48 and 303 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5217:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] " Executive: skipping unrecognized object \"%s\" of type %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 56 and 321 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:5242:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)': layer3/Executive.cpp:7616:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 751 and 1008 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 30 and 1310 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:7625:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10398:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Executive: object %s created.\n", oDst->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14715:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] "new_name before: %s\n", new_name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 19 and 1042 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:14718:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=] "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ new_name, name, (int)a, x, y, z ENDFB(G); ~~~~~~~~ layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 52 or more bytes (assuming 1078) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-i386-2.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-i386-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:4238:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4238:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4236:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4236:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4225:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4225:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4216:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4216:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4214:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4214:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4203:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4203:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4401:39: warning: '%s' directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(align_name, "%s_%s_alignment", ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 522 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, int, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)': layer3/Executive.cpp:3989:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)': layer3/Selector.cpp:9195:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] " Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 1059 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10828:6: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", line ENDFB(G); ^~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10833:4: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s\n", line ENDFB(G); ^~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 1025 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-i386-2.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-i386-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-i386-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-i386-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-i386-2.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)': layer4/Cmd.cpp:7297:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadObject(PyObject*, PyObject*)': layer4/Cmd.cpp:7060:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python2.7/Python.h:33, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-i386-2.7/layer4/Export.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/build/generated/ShaderText.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i386-2.7/layer0/Block.o build/temp.linux-i386-2.7/layer0/Crystal.o build/temp.linux-i386-2.7/layer0/Debug.o build/temp.linux-i386-2.7/layer0/Deferred.o build/temp.linux-i386-2.7/layer0/Err.o build/temp.linux-i386-2.7/layer0/Feedback.o build/temp.linux-i386-2.7/layer0/Field.o build/temp.linux-i386-2.7/layer0/File.o build/temp.linux-i386-2.7/layer0/GenericBuffer.o build/temp.linux-i386-2.7/layer0/GraphicsUtil.o build/temp.linux-i386-2.7/layer0/Isosurf.o build/temp.linux-i386-2.7/layer0/Map.o build/temp.linux-i386-2.7/layer0/Match.o build/temp.linux-i386-2.7/layer0/Matrix.o build/temp.linux-i386-2.7/layer0/MemoryCache.o build/temp.linux-i386-2.7/layer0/MemoryDebug.o build/temp.linux-i386-2.7/layer0/MyPNG.o build/temp.linux-i386-2.7/layer0/Parse.o build/temp.linux-i386-2.7/layer0/Pixmap.o build/temp.linux-i386-2.7/layer0/Queue.o build/temp.linux-i386-2.7/layer0/ShaderMgr.o build/temp.linux-i386-2.7/layer0/ShaderPrg.o build/temp.linux-i386-2.7/layer0/Sphere.o build/temp.linux-i386-2.7/layer0/Tetsurf.o build/temp.linux-i386-2.7/layer0/Texture.o build/temp.linux-i386-2.7/layer0/Tracker.o build/temp.linux-i386-2.7/layer0/Triangle.o build/temp.linux-i386-2.7/layer0/Util.o build/temp.linux-i386-2.7/layer0/Util2.o build/temp.linux-i386-2.7/layer0/Vector.o build/temp.linux-i386-2.7/layer0/Word.o build/temp.linux-i386-2.7/layer0/os_gl.o build/temp.linux-i386-2.7/layer1/Basis.o build/temp.linux-i386-2.7/layer1/ButMode.o build/temp.linux-i386-2.7/layer1/CGO.o build/temp.linux-i386-2.7/layer1/COLLADA.o build/temp.linux-i386-2.7/layer1/Character.o build/temp.linux-i386-2.7/layer1/Color.o build/temp.linux-i386-2.7/layer1/Control.o build/temp.linux-i386-2.7/layer1/Extrude.o build/temp.linux-i386-2.7/layer1/Font.o build/temp.linux-i386-2.7/layer1/FontGLUT.o build/temp.linux-i386-2.7/layer1/FontGLUT8x13.o build/temp.linux-i386-2.7/layer1/FontGLUT9x15.o build/temp.linux-i386-2.7/layer1/FontGLUTHel10.o build/temp.linux-i386-2.7/layer1/FontGLUTHel12.o build/temp.linux-i386-2.7/layer1/FontGLUTHel18.o build/temp.linux-i386-2.7/layer1/FontType.o build/temp.linux-i386-2.7/layer1/Movie.o build/temp.linux-i386-2.7/layer1/Ortho.o build/temp.linux-i386-2.7/layer1/P.o build/temp.linux-i386-2.7/layer1/PConv.o build/temp.linux-i386-2.7/layer1/Pop.o build/temp.linux-i386-2.7/layer1/PyMOLObject.o build/temp.linux-i386-2.7/layer1/Ray.o build/temp.linux-i386-2.7/layer1/Rep.o build/temp.linux-i386-2.7/layer1/Scene.o build/temp.linux-i386-2.7/layer1/ScenePicking.o build/temp.linux-i386-2.7/layer1/SceneRay.o build/temp.linux-i386-2.7/layer1/SceneRender.o build/temp.linux-i386-2.7/layer1/ScrollBar.o build/temp.linux-i386-2.7/layer1/Seq.o build/temp.linux-i386-2.7/layer1/Setting.o build/temp.linux-i386-2.7/layer1/Shaker.o build/temp.linux-i386-2.7/layer1/Symmetry.o build/temp.linux-i386-2.7/layer1/Text.o build/temp.linux-i386-2.7/layer1/TypeFace.o build/temp.linux-i386-2.7/layer1/View.o build/temp.linux-i386-2.7/layer1/Wizard.o build/temp.linux-i386-2.7/layer2/AssemblyHelpers.o build/temp.linux-i386-2.7/layer2/AtomInfo.o build/temp.linux-i386-2.7/layer2/AtomInfoHistory.o build/temp.linux-i386-2.7/layer2/BondTypeHistory.o build/temp.linux-i386-2.7/layer2/CifFile.o build/temp.linux-i386-2.7/layer2/CifMoleculeReader.o build/temp.linux-i386-2.7/layer2/CoordSet.o build/temp.linux-i386-2.7/layer2/DistSet.o build/temp.linux-i386-2.7/layer2/GadgetSet.o build/temp.linux-i386-2.7/layer2/HydrogenAdder.o build/temp.linux-i386-2.7/layer2/MmodTyping.o build/temp.linux-i386-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-i386-2.7/layer2/Mol2Typing.o build/temp.linux-i386-2.7/layer2/MolV3000.o build/temp.linux-i386-2.7/layer2/ObjectAlignment.o build/temp.linux-i386-2.7/layer2/ObjectCGO.o build/temp.linux-i386-2.7/layer2/ObjectCallback.o build/temp.linux-i386-2.7/layer2/ObjectDist.o build/temp.linux-i386-2.7/layer2/ObjectGadget.o build/temp.linux-i386-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-i386-2.7/layer2/ObjectGroup.o build/temp.linux-i386-2.7/layer2/ObjectMap.o build/temp.linux-i386-2.7/layer2/ObjectMesh.o build/temp.linux-i386-2.7/layer2/ObjectMolecule.o build/temp.linux-i386-2.7/layer2/ObjectMolecule2.o build/temp.linux-i386-2.7/layer2/ObjectSlice.o build/temp.linux-i386-2.7/layer2/ObjectSurface.o build/temp.linux-i386-2.7/layer2/ObjectVolume.o build/temp.linux-i386-2.7/layer2/RepAngle.o build/temp.linux-i386-2.7/layer2/RepCartoon.o build/temp.linux-i386-2.7/layer2/RepCylBond.o build/temp.linux-i386-2.7/layer2/RepDihedral.o build/temp.linux-i386-2.7/layer2/RepDistDash.o build/temp.linux-i386-2.7/layer2/RepDistLabel.o build/temp.linux-i386-2.7/layer2/RepDot.o build/temp.linux-i386-2.7/layer2/RepEllipsoid.o build/temp.linux-i386-2.7/layer2/RepLabel.o build/temp.linux-i386-2.7/layer2/RepMesh.o build/temp.linux-i386-2.7/layer2/RepNonbonded.o build/temp.linux-i386-2.7/layer2/RepNonbondedSphere.o build/temp.linux-i386-2.7/layer2/RepRibbon.o build/temp.linux-i386-2.7/layer2/RepSphere.o build/temp.linux-i386-2.7/layer2/RepSphereGenerate.o build/temp.linux-i386-2.7/layer2/RepSphereImmediate.o build/temp.linux-i386-2.7/layer2/RepSurface.o build/temp.linux-i386-2.7/layer2/RepWireBond.o build/temp.linux-i386-2.7/layer2/Sculpt.o build/temp.linux-i386-2.7/layer2/SculptCache.o build/temp.linux-i386-2.7/layer2/SideChainHelper.o build/temp.linux-i386-2.7/layer2/VFont.o build/temp.linux-i386-2.7/layer3/AtomIterators.o build/temp.linux-i386-2.7/layer3/CifDataValueFormatter.o build/temp.linux-i386-2.7/layer3/Editor.o build/temp.linux-i386-2.7/layer3/Executive.o build/temp.linux-i386-2.7/layer3/MaeExportHelpers.o build/temp.linux-i386-2.7/layer3/MoleculeExporter.o build/temp.linux-i386-2.7/layer3/MovieScene.o build/temp.linux-i386-2.7/layer3/PlugIOManager.o build/temp.linux-i386-2.7/layer3/Seeker.o build/temp.linux-i386-2.7/layer3/Selector.o build/temp.linux-i386-2.7/layer4/Cmd.o build/temp.linux-i386-2.7/layer4/Export.o build/temp.linux-i386-2.7/layer4/Menu.o build/temp.linux-i386-2.7/layer4/PopUp.o build/temp.linux-i386-2.7/layer5/PyMOL.o build/temp.linux-i386-2.7/layer5/TestPyMOL.o build/temp.linux-i386-2.7/layer5/main.o build/temp.linux-i386-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i386-2.7/ov/src/OVContext.o build/temp.linux-i386-2.7/ov/src/OVHeap.o build/temp.linux-i386-2.7/ov/src/OVHeapArray.o build/temp.linux-i386-2.7/ov/src/OVLexicon.o build/temp.linux-i386-2.7/ov/src/OVOneToAny.o build/temp.linux-i386-2.7/ov/src/OVOneToOne.o build/temp.linux-i386-2.7/ov/src/OVRandom.o build/temp.linux-i386-2.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so building 'chempy.champ._champ' extension creating build/temp.linux-i386-2.7/contrib/champ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-i386-2.7/contrib/champ/champ.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-i386-2.7/contrib/champ/chiral.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-i386-2.7/contrib/champ/err2.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-i386-2.7/contrib/champ/champ_module.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-i386-2.7/contrib/champ/feedback2.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-i386-2.7/contrib/champ/list.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-i386-2.7/contrib/champ/os_memory.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/sort.c -o build/temp.linux-i386-2.7/contrib/champ/sort.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/vla.c -o build/temp.linux-i386-2.7/contrib/champ/vla.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/strblock.c -o build/temp.linux-i386-2.7/contrib/champ/strblock.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/contrib/champ/champ.o build/temp.linux-i386-2.7/contrib/champ/champ_module.o build/temp.linux-i386-2.7/contrib/champ/chiral.o build/temp.linux-i386-2.7/contrib/champ/err2.o build/temp.linux-i386-2.7/contrib/champ/feedback2.o build/temp.linux-i386-2.7/contrib/champ/list.o build/temp.linux-i386-2.7/contrib/champ/os_memory.o build/temp.linux-i386-2.7/contrib/champ/sort.o build/temp.linux-i386-2.7/contrib/champ/strblock.o build/temp.linux-i386-2.7/contrib/champ/vla.o -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so I: pybuild base:217: /usr/bin/python3 setup.py build --pyqt PyQt5 running build running build_py creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mae.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mol.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/map.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/lst.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/place.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cif.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/brick.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cex.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/models.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/arc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/mass.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy copying modules/chempy/gms.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/completing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/externing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/movie.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/util.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/constants.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/preset.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/computing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/parser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/moving.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/querying.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/povray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/callback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/editing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/internal.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/importing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/xray.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/menu.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/creating.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/helping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/checking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/editor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/headering.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/selector.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/api.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/locking.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol copying modules/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed copying modules/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl copying modules/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2 creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal creating /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup copying modules/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-i386-3.7 creating build/temp.linux-i386-3.7/build creating build/temp.linux-i386-3.7/build/generated creating build/temp.linux-i386-3.7/contrib creating build/temp.linux-i386-3.7/contrib/uiuc creating build/temp.linux-i386-3.7/contrib/uiuc/plugins creating build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-i386-3.7/layer0 creating build/temp.linux-i386-3.7/layer1 creating build/temp.linux-i386-3.7/layer2 creating build/temp.linux-i386-3.7/layer3 creating build/temp.linux-i386-3.7/layer4 creating build/temp.linux-i386-3.7/layer5 creating build/temp.linux-i386-3.7/modules creating build/temp.linux-i386-3.7/modules/cealign creating build/temp.linux-i386-3.7/modules/cealign/src creating build/temp.linux-i386-3.7/ov creating build/temp.linux-i386-3.7/ov/src i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c build/generated/ShaderText.cpp -o build/temp.linux-i386-3.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_timestep': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'open_car_read': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_structure': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (NULL == fgets(fbuffer, 1024, data->file)) ^~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function 'open_binpos_read': contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerInitAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:267:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:269:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(ok) { ^~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_config_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function 'read_dlpoly_timestep': contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function 'PlugIOManagerFreeAll': contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:405:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS); ^~ contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:407:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return ok; ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable 'numatoms' set but not used [-Wunused-but-set-variable] int i, numatoms; ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function 'open_namdbin_read': contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function 'void* open_grid_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'have_gamess': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[3][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'read_molden_rundata': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable 'hessian_data' set but not used [-Wunused-but-set-variable] molfile_qm_hessian_t *hessian_data; ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_stats': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[7][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'count_orbitals': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Ene= %f\n", &orbenergy); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Spin= %s\n", spin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, " Occup= %f\n", &occu); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function 'int {anonymous}::ReadPARM::readparm(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Box[0], &prm->Box[1], &prm->Box[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natcap, &prm->Cutcap, ~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Xcap, &prm->Ycap, &prm->Zcap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function 'open_molden_read': contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_wavefunction': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable 'word' set but not used [-Wunused-but-set-variable] char word[6][BUFSIZ]; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function 'read_car_structure': contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] sprintf(atom->resname, "%d", resid); ^~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999] sprintf(atom->resname, "%d", resid); ^~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 8 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function 'eatline': contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function 'int read_spider_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void binary_get_element(PlyFile*, char*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(int), 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (str, len, 1, fp); ~~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function 'void get_binary_item(FILE*, int, int*, unsigned int*, double*)': contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 1, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 2, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 4, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (ptr, 8, 1, fp); ~~~~~~^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function 'void* open_cube_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // skip second header line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(cube->fd, "%d", &orb); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function 'void* open_ccp4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(symData, 81, fd); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'DEN_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'POT_read_volumetric_data': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'abinit_header': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(skip, 1, 8, fp); ^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function 'GEO_read_next_timestep': contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'int read_mdf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mdf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function 'void* open_mdf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function 'int mdio_readline(md_file*, char*, int, int)': contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, n, mf->f); ~~~~~^~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'int read_edm_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 13, edm->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'int read_dsn6_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function 'void* open_dsn6_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'int read_brix_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(brick, sizeof(char), 512, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function 'void* open_brix_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%3s", keyWord); ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'int read_mol2(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, mol2->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function 'void* open_mol2_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51: contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fread': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:35: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h:435:44: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fread(): rc %ld sz: %ld\n", rc, size); ~~^ ~~~~ %lld contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function 'fio_fwrite': contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:36: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~ contrib/uiuc/plugins/molfile_plugin/src/fastio.h:560:58: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'fio_size_t' {aka 'long long int'} [-Wformat=] printf("fio_fwrite(): rc %ld sz: %ld szleft: %ld calls: %d\n", ~~^ %lld rc, size, szleft, writecalls); ~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function 'int read_parm7_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_resnames(const char*, int, char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 85, file); ~~~~~^~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &cur); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'parmstruct* read_parm7_header(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, 512, file); ~~~~~^~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "%FLAG" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" ~~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(sdum, sizeof(sdum), file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,parm7, ~~~~~~^~~~~~~~~~~~ &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Jparm, &prm->Nparm); ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, ~~~~~~^~~~~~~~~~~~~ &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Natyp, &prm->Nphb); ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &prm->IfBox, &prm->Nmxrs, &prm->IfCap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function 'int read_parm7_flag(FILE*, const char*, const char*)': contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%s\n", buf); ~~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function 'open_rst_read': contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable 'timesteprst' set but not used [-Wunused-but-set-variable] double timesteprst; ^~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(title, 82, fd); ^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 82, fd); ^~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function 'read_dcdstep': contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable 'readlen' set but not used [-Wunused-but-set-variable] fio_size_t readlen; /* number of bytes actually read */ ^~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'int read_bgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function 'void* open_bgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'read_vaspoutcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function 'open_vaspoutcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function 'void* open_uhbd_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function 'get_basis_options': contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: '%s' directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=] sprintf(data->basis_string, "%d-%s%sG%s", ^~ ngauss, (data->gbasis+1), diffuse, ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 16386) into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: '%s' directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=] sprintf(data->basis_string, "STO-%dG%s%s", ^~ ngauss, diffuse, polarization); ~~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27, from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 16399 bytes into a destination of size 8192 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'read_vaspxdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function 'open_vaspxdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function 'void* open_fs4_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function 'void* open_plt_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Debug.cpp -o build/temp.linux-i386-3.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'read_vasp5xdatcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function 'open_vasp5xdatcar_read': contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function 'int read_vtk_data(void*, int, float*, float*)': contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Feedback.cpp -o build/temp.linux-i386-3.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Deferred.cpp -o build/temp.linux-i386-3.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'read_vaspxml_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GenericBuffer.cpp -o build/temp.linux-i386-3.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function 'open_vaspxml_read': contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_data': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'read_vaspparchg_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function 'open_vaspparchg_read': contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Map.cpp -o build/temp.linux-i386-3.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Block.cpp -o build/temp.linux-i386-3.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); //one more read to keep us in sync ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Err.cpp -o build/temp.linux-i386-3.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryCache.cpp -o build/temp.linux-i386-3.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_data': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'read_vaspchgcar_metadata': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function 'open_vaspchgcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MemoryDebug.cpp -o build/temp.linux-i386-3.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_timestep(void*, int, molfile_timestep_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'int read_xbgf_structure(void*, int*, molfile_atom_t*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, bgf->file); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function 'void* open_xbgf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, LINESIZE, fd); ~~~~~^~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'write_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to 'sizeof' in 'strncpy' call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess] strncpy(tmptype, atom->type, sizeof(atom->type)); ^ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_timestep': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'read_vaspposcar_structure': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function 'open_vaspposcar_read': contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function 'vtf_read_bonds': contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: '%s' directive argument is null [-Wformat-overflow=] sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n", ^~ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Field.cpp -o build/temp.linux-i386-3.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function 'get_atom_radius': contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable 'type' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] char *name, *type; ^~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Parse.cpp -o build/temp.linux-i386-3.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderMgr.cpp -o build/temp.linux-i386-3.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tetsurf.cpp -o build/temp.linux-i386-3.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Triangle.cpp -o build/temp.linux-i386-3.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/MyPNG.cpp -o build/temp.linux-i386-3.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Vector.cpp -o build/temp.linux-i386-3.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Basis.cpp -o build/temp.linux-i386-3.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ButMode.cpp -o build/temp.linux-i386-3.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Pixmap.cpp -o build/temp.linux-i386-3.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/COLLADA.cpp -o build/temp.linux-i386-3.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Control.cpp -o build/temp.linux-i386-3.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void eatline(FILE*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ~~~~~^~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function 'void* open_xsf_read(const char*, const char*, int*)': contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readbuf, 256, xsf->fd); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Queue.cpp -o build/temp.linux-i386-3.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Crystal.cpp -o build/temp.linux-i386-3.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel10.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/GraphicsUtil.cpp -o build/temp.linux-i386-3.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'void line3(FILE*, GRASSP*)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line3, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function 'int read_rawgraphics(void*, int*, const molfile_graphics_t**)': contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(line, 1, 80, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] #define TRASH fread(trash, 4, 1, infile) ~~~~~^~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro 'TRASH' TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontType.cpp -o build/temp.linux-i386-3.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Match.cpp -o build/temp.linux-i386-3.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/P.cpp -o build/temp.linux-i386-3.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/File.cpp -o build/temp.linux-i386-3.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel12.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'std::__cxx11::string framefile(const string&, size_t, size_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(answer, "%03x/", d1); ^~~~~~~ In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=] sprintf(answer, "%03x/%03x/", d1, d2); ^~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 9 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PyMOLObject.cpp -o build/temp.linux-i386-3.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUTHel18.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Word.cpp -o build/temp.linux-i386-3.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Isosurf.cpp -o build/temp.linux-i386-3.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function 'void DDmkdir(const string&, mode_t, int, int)': contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(sub, "%03x/", i); ^~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 10 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: '%03x' directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=] sprintf(subsub, "%03x", j); ^~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56, from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 4 and 9 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Matrix.cpp -o build/temp.linux-i386-3.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Scene.cpp -o build/temp.linux-i386-3.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRender.cpp -o build/temp.linux-i386-3.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/CGO.cpp -o build/temp.linux-i386-3.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT8x13.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Setting.cpp -o build/temp.linux-i386-3.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Extrude.cpp -o build/temp.linux-i386-3.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Movie.cpp -o build/temp.linux-i386-3.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/FontGLUT9x15.cpp -o build/temp.linux-i386-3.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Character.cpp -o build/temp.linux-i386-3.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Texture.cpp -o build/temp.linux-i386-3.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/os_gl.cpp -o build/temp.linux-i386-3.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Text.cpp -o build/temp.linux-i386-3.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Wizard.cpp -o build/temp.linux-i386-3.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ray.cpp -o build/temp.linux-i386-3.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util.cpp -o build/temp.linux-i386-3.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/PConv.cpp -o build/temp.linux-i386-3.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScrollBar.cpp -o build/temp.linux-i386-3.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'int MovieRelease(Block*, int, int, int, int)': layer1/Movie.cpp:1755:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 972 and 992 [-Wformat-overflow=] sprintf(buffer,"cmd.mview('clear',first=%d,last=%d%s)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 + min_frame, 1 + max_frame, extra); ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 34 and 1077 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1741:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 989 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mcopy(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1060 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1770:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mdelete(%d,%d%s)", I->DragStartFrame - I->DragCurFrame, first+1, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1766:26: warning: '%s' directive writing up to 1023 bytes into a region of size between 991 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.minsert(%d,%d%s)", I->DragCurFrame - I->DragStartFrame, first, extra); ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1058 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Movie.cpp:1727:24: warning: '%s' directive writing up to 1023 bytes into a region of size between 990 and 1009 [-Wformat-overflow=] sprintf(buffer,"cmd.mmove(%d,%d,%d%s)", 1+I->DragCurFrame, 1+I->DragStartFrame, 1, extra); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 17 and 1059 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Color.cpp -o build/temp.linux-i386-3.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Tracker.cpp -o build/temp.linux-i386-3.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Util2.cpp -o build/temp.linux-i386-3.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Movie.cpp: In function 'void MovieModalPNG(PyMOLGlobals*, CMovie*, CMovieModal*)': layer1/Movie.cpp:803:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 221 [-Wformat-truncation=] " MoviePNG-Error: unable to write '%s'\n", M->fname ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Movie.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 1060 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfoHistory.cpp -o build/temp.linux-i386-3.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Ortho.cpp -o build/temp.linux-i386-3.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Font.cpp -o build/temp.linux-i386-3.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifMoleculeReader.cpp -o build/temp.linux-i386-3.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/GadgetSet.cpp -o build/temp.linux-i386-3.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Seq.cpp -o build/temp.linux-i386-3.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-i386-3.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectAlignment.cpp -o build/temp.linux-i386-3.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AssemblyHelpers.cpp -o build/temp.linux-i386-3.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Scene.cpp: In function 'int SceneClick(Block*, int, int, int, int, double)': layer1/Scene.cpp:4103:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4103:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3971:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3971:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3988:22: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 23 and 1046 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3988:15: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)", buffer, cEditorSele2 ENDF(G); ^~~~~~ layer1/Scene.cpp:3996:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:3996:22: note: 'sprintf' output between 16 and 2062 bytes into a destination of size 1024 sprintf(buffer, "cmd.edit(\"%s\",\"%s\")", buf1, buf2); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3856:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 24 and 1047 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3856:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s -> (%s)\n", buffer, cEditorSele1 ENDF(G); ^~~~~~ layer1/Scene.cpp:3862:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1014 [-Wformat-overflow=] sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:3862:24: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf(buf2, "cmd.edit(\"%s\",pkresi=1)", buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:3891:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 16 and 1039 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3891:17: note: in expansion of macro 'PRINTF' PRINTF " You unpicked %s.", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:3904:50: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:262:98: note: 'snprintf' output between 21 and 1299 bytes into a destination of size 255 #define PRINTFB(G,sysmod,mask) { FeedbackLineType _FBstr; if(Feedback(G,sysmod,mask)) {(snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:3904:17: note: in expansion of macro 'PRINTFB' PRINTFB(G, FB_Scene, FB_Results) " You clicked %s -> (%s)\n", buffer, ^~~~~~~ layer1/Scene.cpp:4162:20: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4162:13: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4196:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4196:22: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"byobject (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4187:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1007 [-Wformat-overflow=] sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4187:22: note: 'sprintf' output between 21 and 1044 bytes into a destination of size 1024 sprintf(buffer, "cmd.drag(\"bymol (%s)\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4247:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4247:31: note: directive argument in the range [-2147483647, 2147483647] layer1/Scene.cpp:4247:22: note: 'sprintf' output between 23 and 1056 bytes into a destination of size 1024 sprintf(buffer, "cmd.center(\"%s\",state=%d)", buf1, I->LastPicked.context.state + 1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4218:33: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "cmd.origin(\"%s\")", buf1); ^~~~~~~~~~~~~~~~~~~~ ~~~~ layer1/Scene.cpp:4218:24: note: 'sprintf' output between 15 and 1038 bytes into a destination of size 1024 sprintf(buffer, "cmd.origin(\"%s\")", buf1); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4225:24: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 242 [-Wformat-truncation=] PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~~~~~~~~~~~~ ~~~~~~ In file included from layer1/Ortho.h:30, from layer1/Scene.h:23, from layer1/Scene.cpp:32: layer0/Feedback.h:265:53: note: 'snprintf' output between 14 and 1037 bytes into a destination of size 255 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT, ^ layer1/Scene.cpp:4225:17: note: in expansion of macro 'PRINTF' PRINTF " You clicked %s", buffer ENDF(G); ^~~~~~ layer1/Scene.cpp:4312:29: warning: ')' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ^~~~~~~~ layer1/Scene.cpp:4312:22: note: 'sprintf' output 3 or more bytes (assuming 1026) into a destination of size 1024 sprintf(buf2, "%s(%s)", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4319:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ layer1/Scene.cpp:4319:26: note: 'sprintf' output 20 or more bytes (assuming 1298) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\")", selName, sel_mode_kw, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~~ layer1/Scene.cpp:4294:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4294:22: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4303:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 760 and 1015 [-Wformat-overflow=] sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~ layer1/Scene.cpp:4303:26: note: 'sprintf' output 35 or more bytes (assuming 2591) into a destination of size 1024 sprintf(buf2, "(((%s) or %s(%s)) and not ((%s(%s)) and %s(%s)))", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName, sel_mode_kw, buffer, sel_mode_kw, buffer, sel_mode_kw, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ selName); ~~~~~~~~ layer1/Scene.cpp:4306:35: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~ layer1/Scene.cpp:4306:26: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf2); ~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4271:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ^~~~~~~~~~ ~~~~~~ layer1/Scene.cpp:4271:20: note: 'sprintf' output 5 or more bytes (assuming 1028) into a destination of size 1024 sprintf(buf2, "(%s(%s))", sel_mode_kw, buffer); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer1/Scene.cpp:4282:33: warning: '%s' directive writing up to 1023 bytes into a region of size between 753 and 1008 [-Wformat-overflow=] sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~ layer1/Scene.cpp:4282:24: note: 'sprintf' output 29 or more bytes (assuming 1307) into a destination of size 1024 sprintf(buffer, "cmd.select('%s',\"%s(%s)\",enable=1)", selName, ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sel_mode_kw, buf1); ~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Pop.cpp -o build/temp.linux-i386-3.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectDist.cpp -o build/temp.linux-i386-3.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGroup.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Mol2Typing.cpp -o build/temp.linux-i386-3.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/HydrogenAdder.cpp -o build/temp.linux-i386-3.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/AtomInfo.cpp -o build/temp.linux-i386-3.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/ScenePicking.cpp -o build/temp.linux-i386-3.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMap.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSurface.cpp -o build/temp.linux-i386-3.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MolV3000.cpp -o build/temp.linux-i386-3.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/ShaderPrg.cpp -o build/temp.linux-i386-3.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCartoon.cpp -o build/temp.linux-i386-3.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCGO.cpp -o build/temp.linux-i386-3.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/MmodTyping.cpp -o build/temp.linux-i386-3.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadget.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer1/Ray.cpp: In function 'void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)': layer1/Ray.cpp:1549:19: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=] "Transform {\n" ^~~~~~~~~~~~~~~ " translation %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " rotation %8.6f %8.6f %8.6f %8.6f\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " children [\n" ~~~~~~~~~~~~~~~ "%s" ~~~~ " ]\n" ~~~~~~ "}\n", ~~~~~ layer1/Ray.cpp:1558:72: vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry); ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer1/Ray.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 116 and 2993 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistDash.cpp -o build/temp.linux-i386-3.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepEllipsoid.cpp -o build/temp.linux-i386-3.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceDump(ObjectSurface*, const char*, int)': layer2/ObjectSurface.cpp:293:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " ObjectSurfaceDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 34 or more bytes (assuming 289) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/SceneRay.cpp -o build/temp.linux-i386-3.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/BondTypeHistory.cpp -o build/temp.linux-i386-3.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSurface.cpp: In function 'void ObjectSurfaceUpdate(ObjectSurface*)': layer2/ObjectSurface.cpp:528:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " ObjectSurface: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSurface.cpp:497:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] "ObjectSurfaceUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSurface.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 53 and 308 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbonded.cpp -o build/temp.linux-i386-3.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)': layer2/ObjectMolecule.cpp:1525:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp:1543:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=] " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 66 and 1089 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectVolume.cpp -o build/temp.linux-i386-3.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)': layer2/ObjectMolecule.cpp:8024:5: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=] " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 289 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphere.cpp -o build/temp.linux-i386-3.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-i386-3.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer0/Sphere.cpp -o build/temp.linux-i386-3.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectCallback.cpp -o build/temp.linux-i386-3.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CifFile.cpp -o build/temp.linux-i386-3.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepLabel.cpp -o build/temp.linux-i386-3.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDistLabel.cpp -o build/temp.linux-i386-3.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSurface.cpp -o build/temp.linux-i386-3.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SculptCache.cpp -o build/temp.linux-i386-3.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-i386-3.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'ObjectMapState* ObjectVolumeGetMapState(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'CField* ObjectVolumeGetField(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectVolume.cpp: In function 'void ObjectVolumeUpdate(ObjectVolume*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/AtomIterators.cpp -o build/temp.linux-i386-3.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectVolume.cpp: In function 'void ObjectVolumeRender(ObjectVolume*, RenderInfo*)': layer2/ObjectVolume.cpp:76:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectVolume.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 46 and 301 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereGenerate.cpp -o build/temp.linux-i386-3.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)': layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:4311:5: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=] " ObjectMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 1037 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Executive.cpp -o build/temp.linux-i386-3.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/SideChainHelper.cpp -o build/temp.linux-i386-3.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MovieScene.cpp -o build/temp.linux-i386-3.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepAngle.cpp -o build/temp.linux-i386-3.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMap.cpp: In function 'ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)': layer2/ObjectMap.cpp:2983:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2992:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:2998:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMap.cpp:3080:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=] " PHIStrToMap: %s\n", cc ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~ ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMap.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 16 and 1039 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDot.cpp -o build/temp.linux-i386-3.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepRibbon.cpp -o build/temp.linux-i386-3.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-i386-3.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepMesh.cpp -o build/temp.linux-i386-3.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/VFont.cpp -o build/temp.linux-i386-3.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Editor.cpp -o build/temp.linux-i386-3.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepSphereImmediate.cpp -o build/temp.linux-i386-3.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMesh.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/CoordSet.cpp -o build/temp.linux-i386-3.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule.cpp: In function 'void ObjectMoleculeUpdate(ObjectMolecule*)': layer2/ObjectMolecule.cpp:11293:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=] " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 68 and 333 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMolecule.cpp: In function 'int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float*, int, int)': layer2/ObjectMolecule.cpp:11416:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer, v[0], v[1], v[2], state + 1, mode, 0); ~~~~~~ layer2/ObjectMolecule.cpp:11416:21: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 78 and 2036 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Selector.cpp -o build/temp.linux-i386-3.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Rep.cpp -o build/temp.linux-i386-3.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepCylBond.cpp -o build/temp.linux-i386-3.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Menu.cpp -o build/temp.linux-i386-3.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/TestPyMOL.cpp -o build/temp.linux-i386-3.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVContext.cpp -o build/temp.linux-i386-3.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'int EditorLogState(PyMOLGlobals*, int)': layer3/Editor.cpp:588:23: warning: '%s' directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=] sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0); ~~~~ layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] layer3/Editor.cpp:588:23: note: directive argument in the range [0, 1] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 4124 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeap.cpp -o build/temp.linux-i386-3.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Editor.cpp: In function 'void EditorHFill(PyMOLGlobals*, int)': layer3/Editor.cpp:1027:20: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer, "((neighbor (%s)) and hydro and not (%s))", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s2, s2); ~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 37 and 2083 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function 'void EditorPrepareDrag(PyMOLGlobals*, CObject*, int, int, int, int)': layer3/Editor.cpp:1903:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Editor: grabbing (%s).", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 22 and 277 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVHeapArray.cpp -o build/temp.linux-i386-3.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVLexicon.cpp -o build/temp.linux-i386-3.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMesh.cpp: In function 'void ObjectMeshDump(ObjectMesh*, const char*, int)': layer2/ObjectMesh.cpp:370:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjectMeshDump: %s written to %s\n", I->Obj.Name, fname ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 31 or more bytes (assuming 286) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp: In function 'void EditorDefineExtraPks(PyMOLGlobals*)': layer3/Editor.cpp:338:21: warning: '%s' directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=] sprintf(buffer, "(byres %s)", name); ^~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 9 and 264 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:340:21: warning: '%s' directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=] sprintf(buffer, "(bychain %s)", name); ^~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 266 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Editor.cpp:342:21: warning: '%s' directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=] sprintf(buffer, "(byobject %s)", name); ^~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Editor.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVRandom.cpp -o build/temp.linux-i386-3.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/PopUp.cpp -o build/temp.linux-i386-3.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/CoordSet.cpp: In member function 'void CoordSet::update(int)': layer2/CoordSet.cpp:1211:39: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 223 [-Wformat-truncation=] PRINTFB(G, FB_CoordSet, FB_Blather) " CoordSetUpdate-Entered: object %s state %d cset %p\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp: In function 'void ObjectMeshUpdate(ObjectMesh*)': layer2/ObjectMesh.cpp:550:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=] "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 305 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectMesh.cpp:584:15: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=] " ObjectMesh: updating \"%s\".\n", I->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMesh.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 27 and 282 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/ov_utility.cpp -o build/temp.linux-i386-3.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToAny.cpp -o build/temp.linux-i386-3.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c ov/src/OVOneToOne.cpp -o build/temp.linux-i386-3.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/main.cpp -o build/temp.linux-i386-3.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)': layer3/Executive.cpp:9655:17: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=] " Remove: eliminated %d atoms in model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 307 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int)': layer3/Executive.cpp:10004:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=] " Valence: %d bond valences adjusted in model \"%s\".\n", cnt, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 314 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:9991:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=] " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 35 and 300 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:10016:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=] " Unbond: %d bonds removed from model \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 41 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12098:17: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12098:17: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)': layer3/Executive.cpp:12181:8: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Getting: %s for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12181:8: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 38 and 556 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/DistSet.cpp -o build/temp.linux-i386-3.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)': layer3/Executive.cpp:12283:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, obj->Obj.Name ENDF(G); ~~~~ layer3/Executive.cpp:12283:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 560 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12302:7: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is not a bond-level setting\n", name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 50 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12359:15: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s unset for %d bonds in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, nSet, rec->obj->Name ENDF(G); ~~~~ layer3/Executive.cpp:12359:15: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 44 and 562 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, const char*, int, int, int)': layer3/Executive.cpp:12597:9: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=] " Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(G, index) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 42 or more bytes (assuming 296) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12453:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12453:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12450:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12450:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12542:27: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12574:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12574:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12567:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12409:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)': layer3/Executive.cpp:12759:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects, state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, nObj, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] layer3/Executive.cpp:12759:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1338 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12756:21: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ layer3/Executive.cpp:12756:21: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1320 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12791:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, op.i4, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 42 and 561 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12823:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12823:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12815:25: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, rec->obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12719:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, CObject*, int, int, int)': layer3/Executive.cpp:12888:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name, state + 1 ENDF(G); ~~~~ layer3/Executive.cpp:12888:19: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 43 and 1584 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12880:19: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] " Setting: %s set to %s in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ name, value2, obj->Name ENDF(G); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 34 and 1566 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:12859:18: warning: '%s' directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=] PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 21 and 1298 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveUnsetSetting(PyMOLGlobals*, int, const char*, int, int, int)': layer3/Executive.cpp:12998:23: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=] " Setting: %s unset for %d atoms in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 44 or more bytes (assuming 299) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\", state %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13023:25: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 41 or more bytes (assuming 305) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:13017:25: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=] " Setting: %s unset in object \"%s\".\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 32 or more bytes (assuming 287) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer5/PyMOL.cpp -o build/temp.linux-i386-3.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer5/main.cpp: In function 'void launch(CPyMOLOptions*, int)': layer5/main.cpp:1480:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char *myArgv[8] = {"pymol"}; ^ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/PlugIOManager.cpp -o build/temp.linux-i386-3.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepDihedral.cpp -o build/temp.linux-i386-3.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveDrag(Block*, int, int, int)': layer3/Executive.cpp:16050:42: warning: '%s' directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order_input, (location == -2) ? "upper" : "current"); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 32 and 1057 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/TypeFace.cpp -o build/temp.linux-i386-3.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/RepWireBond.cpp -o build/temp.linux-i386-3.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/View.cpp -o build/temp.linux-i386-3.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-i386-3.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'void ExecutiveManageObject(PyMOLGlobals*, CObject*, int, int)': layer3/Executive.cpp:15045:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: object \"%s\" created.\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 32 and 287 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15053:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=] " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 61 and 316 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:15059:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=] " Executive-Warning: name \"%s\" collides with a selection language keyword.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 73 and 328 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveGroup(PyMOLGlobals*, const char*, const char*, int, int)': layer3/Executive.cpp:2302:19: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=] " Executive: adding '%s' to group '%s'.\n", rec->name, rec->group_name ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 546 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetName(PyMOLGlobals*, const char*, const char*)': layer3/Executive.cpp:3561:7: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 234 [-Wformat-truncation=] "SetName-Error: name '%s' is a selection keyword.\n", name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 48 and 303 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/PlugIOManager.cpp: In function 'CObject* PlugIOManagerLoad(PyMOLGlobals*, CObject**, const char*, int, int, const char*)': layer3/PlugIOManager.cpp:859:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=] " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/PlugIOManager.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 58 and 313 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)': layer3/Executive.cpp:5217:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=] " Executive: skipping unrecognized object \"%s\" of type %d.\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 56 and 321 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:5242:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=] "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 49 and 304 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSelectRect(PyMOLGlobals*, BlockRect*, int)': layer3/Executive.cpp:7616:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 751 and 1008 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"(%s)\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 30 and 1310 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:7625:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buffer); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)': layer3/Executive.cpp:10398:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=] " Executive: object %s created.\n", oDst->Obj.Name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 30 and 285 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/Seeker.cpp -o build/temp.linux-i386-3.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectMolecule2.cpp -o build/temp.linux-i386-3.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer5/PyMOL.cpp: In function 'char* PyMOL_GetClickString(CPyMOL*, int)': layer5/PyMOL.cpp:2846:19: warning: '%s' directive writing up to 255 bytes into a region of size between 137 and 914 [-Wformat-overflow=] "type=object:molecule\nobject=%s\nindex=%d\nrank=%d\nid=%d\nsegi=%s\nchain=%s\nresn=%s\nresi=%d%s\nname=%s\nalt=%s\nclick=%s\nmod_keys=%s\nx=%d\ny=%d\n%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer5/PyMOL.cpp:2856:70: ai->alt, butstr, modstr, I->ClickedX, I->ClickedY, posstr); ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer5/PyMOL.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 112 or more bytes (assuming 1144) into a destination of size 1025 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)': layer3/Executive.cpp:14715:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 238 [-Wformat-truncation=] "new_name before: %s\n", new_name ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 19 and 1042 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:14718:21: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 236 [-Wformat-truncation=] "Making new object: %s from name=%s, a=%d, x=%d, y=%d, z=%d\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ new_name, name, (int)a, x, y, z ENDFB(G); ~~~~~~~~ layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] layer3/Executive.cpp:14718:21: note: directive argument in the range [-1, 2] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 52 or more bytes (assuming 1078) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/Sculpt.cpp -o build/temp.linux-i386-3.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Executive.cpp: In function 'int ExecutiveProcessPDBFile(PyMOLGlobals*, CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)': layer3/Executive.cpp:4238:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4238:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4236:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4236:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4225:35: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4225:35: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4216:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4216:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4214:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, model_number); ^~~~~~~~~ layer3/Executive.cpp:4214:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4203:33: warning: '%04d' directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1); ^~~~~~~~~ layer3/Executive.cpp:4203:33: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 267 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp:4401:39: warning: '%s' directive writing up to 255 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(align_name, "%s_%s_alignment", ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 12 and 522 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)': layer3/Selector.cpp:2036:21: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=] " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 59 or more bytes (assuming 314) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Executive.cpp: In function 'int ExecutiveLoad(PyMOLGlobals*, const char*, int, int, const char*, int, int, int, int, int, int, const char*, const char*, const char*, bool)': layer3/Executive.cpp:3989:7: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Executive.cpp:16: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerSelectionToggleRange(PyMOLGlobals*, CSeqRow*, int, int, int, int, int)': layer3/Seeker.cpp:148:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Seeker.cpp: In function 'void SeekerSelectionToggle(PyMOLGlobals*, CSeqRow*, int, int, int, int)': layer3/Seeker.cpp:232:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 752 and 1009 [-Wformat-overflow=] sprintf(buf2, "%scmd.select(\"%s\",\"%s\",enable=1)\n", prefix, selName, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ buf1); ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Seeker.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 28 and 1308 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MaeExportHelpers.cpp -o build/temp.linux-i386-3.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectMolecule2.cpp: In function 'int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, float*, int, int, int, int)': layer2/ObjectMolecule2.cpp:308:9: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=] " ObjMol: created %s/%s/%s/%s`%d%c/%s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectMolecule2.cpp:20: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 26 or more bytes (assuming 281) into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int* SelectorEvaluate(PyMOLGlobals*, char (*)[1024], int, int)': layer3/Selector.cpp:9195:13: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=] " Selector-Error: invalid model \"%s\".\n", base[1].text ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 1059 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10828:6: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", line ENDFB(G); ^~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp:10833:4: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s\n", line ENDFB(G); ^~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 1025 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Shaker.cpp -o build/temp.linux-i386-3.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer3/MoleculeExporter.cpp -o build/temp.linux-i386-3.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer3/Selector.cpp: In function 'int _SelectorCreate(PyMOLGlobals*, const char*, const char*, ObjectMolecule**, int, Multipick*, CSeqRow*, int, int**, int*, int, OVOneToAny*, int, int, int)': layer3/Selector.cpp:7465:11: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 233 [-Wformat-truncation=] " Selector: selection \"%s\" defined with %d atoms.\n", name, c ENDFB(G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer3/Selector.cpp:19: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 47 and 1080 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer1/Symmetry.cpp -o build/temp.linux-i386-3.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer2/ObjectSlice.cpp -o build/temp.linux-i386-3.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer2/ObjectSlice.cpp: In function 'void ObjectSliceUpdate(ObjectSlice*)': layer2/ObjectSlice.cpp:686:11: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=] "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 51 and 306 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer2/ObjectSlice.cpp:697:13: warning: '%s' directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=] " ObjectSlice: updating \"%s\".\n", I->Obj.Name ENDFB(I->Obj.G); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer2/ObjectSlice.cpp:17: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 28 and 283 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Cmd.cpp -o build/temp.linux-i386-3.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon layer4/Cmd.cpp: In function 'PyObject* CmdLoadTraj(PyObject*, PyObject*)': layer4/Cmd.cpp:7297:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ layer4/Cmd.cpp: In function 'PyObject* CmdLoadObject(PyObject*, PyObject*)': layer4/Cmd.cpp:7060:9: warning: '%s' directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=] "%s", buf ENDFB(G); ^~~~ ~~~ In file included from /usr/include/stdio.h:873, from /usr/include/python3.7m/Python.h:25, from layer0/os_python.h:34, from layer4/Cmd.cpp:45: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin_snprintf' output between 1 and 1024 bytes into a destination of size 255 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c layer4/Export.cpp -o build/temp.linux-i386-3.7/layer4/Export.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/build/generated/ShaderText.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i386-3.7/layer0/Block.o build/temp.linux-i386-3.7/layer0/Crystal.o build/temp.linux-i386-3.7/layer0/Debug.o build/temp.linux-i386-3.7/layer0/Deferred.o build/temp.linux-i386-3.7/layer0/Err.o build/temp.linux-i386-3.7/layer0/Feedback.o build/temp.linux-i386-3.7/layer0/Field.o build/temp.linux-i386-3.7/layer0/File.o build/temp.linux-i386-3.7/layer0/GenericBuffer.o build/temp.linux-i386-3.7/layer0/GraphicsUtil.o build/temp.linux-i386-3.7/layer0/Isosurf.o build/temp.linux-i386-3.7/layer0/Map.o build/temp.linux-i386-3.7/layer0/Match.o build/temp.linux-i386-3.7/layer0/Matrix.o build/temp.linux-i386-3.7/layer0/MemoryCache.o build/temp.linux-i386-3.7/layer0/MemoryDebug.o build/temp.linux-i386-3.7/layer0/MyPNG.o build/temp.linux-i386-3.7/layer0/Parse.o build/temp.linux-i386-3.7/layer0/Pixmap.o build/temp.linux-i386-3.7/layer0/Queue.o build/temp.linux-i386-3.7/layer0/ShaderMgr.o build/temp.linux-i386-3.7/layer0/ShaderPrg.o build/temp.linux-i386-3.7/layer0/Sphere.o build/temp.linux-i386-3.7/layer0/Tetsurf.o build/temp.linux-i386-3.7/layer0/Texture.o build/temp.linux-i386-3.7/layer0/Tracker.o build/temp.linux-i386-3.7/layer0/Triangle.o build/temp.linux-i386-3.7/layer0/Util.o build/temp.linux-i386-3.7/layer0/Util2.o build/temp.linux-i386-3.7/layer0/Vector.o build/temp.linux-i386-3.7/layer0/Word.o build/temp.linux-i386-3.7/layer0/os_gl.o build/temp.linux-i386-3.7/layer1/Basis.o build/temp.linux-i386-3.7/layer1/ButMode.o build/temp.linux-i386-3.7/layer1/CGO.o build/temp.linux-i386-3.7/layer1/COLLADA.o build/temp.linux-i386-3.7/layer1/Character.o build/temp.linux-i386-3.7/layer1/Color.o build/temp.linux-i386-3.7/layer1/Control.o build/temp.linux-i386-3.7/layer1/Extrude.o build/temp.linux-i386-3.7/layer1/Font.o build/temp.linux-i386-3.7/layer1/FontGLUT.o build/temp.linux-i386-3.7/layer1/FontGLUT8x13.o build/temp.linux-i386-3.7/layer1/FontGLUT9x15.o build/temp.linux-i386-3.7/layer1/FontGLUTHel10.o build/temp.linux-i386-3.7/layer1/FontGLUTHel12.o build/temp.linux-i386-3.7/layer1/FontGLUTHel18.o build/temp.linux-i386-3.7/layer1/FontType.o build/temp.linux-i386-3.7/layer1/Movie.o build/temp.linux-i386-3.7/layer1/Ortho.o build/temp.linux-i386-3.7/layer1/P.o build/temp.linux-i386-3.7/layer1/PConv.o build/temp.linux-i386-3.7/layer1/Pop.o build/temp.linux-i386-3.7/layer1/PyMOLObject.o build/temp.linux-i386-3.7/layer1/Ray.o build/temp.linux-i386-3.7/layer1/Rep.o build/temp.linux-i386-3.7/layer1/Scene.o build/temp.linux-i386-3.7/layer1/ScenePicking.o build/temp.linux-i386-3.7/layer1/SceneRay.o build/temp.linux-i386-3.7/layer1/SceneRender.o build/temp.linux-i386-3.7/layer1/ScrollBar.o build/temp.linux-i386-3.7/layer1/Seq.o build/temp.linux-i386-3.7/layer1/Setting.o build/temp.linux-i386-3.7/layer1/Shaker.o build/temp.linux-i386-3.7/layer1/Symmetry.o build/temp.linux-i386-3.7/layer1/Text.o build/temp.linux-i386-3.7/layer1/TypeFace.o build/temp.linux-i386-3.7/layer1/View.o build/temp.linux-i386-3.7/layer1/Wizard.o build/temp.linux-i386-3.7/layer2/AssemblyHelpers.o build/temp.linux-i386-3.7/layer2/AtomInfo.o build/temp.linux-i386-3.7/layer2/AtomInfoHistory.o build/temp.linux-i386-3.7/layer2/BondTypeHistory.o build/temp.linux-i386-3.7/layer2/CifFile.o build/temp.linux-i386-3.7/layer2/CifMoleculeReader.o build/temp.linux-i386-3.7/layer2/CoordSet.o build/temp.linux-i386-3.7/layer2/DistSet.o build/temp.linux-i386-3.7/layer2/GadgetSet.o build/temp.linux-i386-3.7/layer2/HydrogenAdder.o build/temp.linux-i386-3.7/layer2/MmodTyping.o build/temp.linux-i386-3.7/layer2/MmtfMoleculeReader.o build/temp.linux-i386-3.7/layer2/Mol2Typing.o build/temp.linux-i386-3.7/layer2/MolV3000.o build/temp.linux-i386-3.7/layer2/ObjectAlignment.o build/temp.linux-i386-3.7/layer2/ObjectCGO.o build/temp.linux-i386-3.7/layer2/ObjectCallback.o build/temp.linux-i386-3.7/layer2/ObjectDist.o build/temp.linux-i386-3.7/layer2/ObjectGadget.o build/temp.linux-i386-3.7/layer2/ObjectGadgetRamp.o build/temp.linux-i386-3.7/layer2/ObjectGroup.o build/temp.linux-i386-3.7/layer2/ObjectMap.o build/temp.linux-i386-3.7/layer2/ObjectMesh.o build/temp.linux-i386-3.7/layer2/ObjectMolecule.o build/temp.linux-i386-3.7/layer2/ObjectMolecule2.o build/temp.linux-i386-3.7/layer2/ObjectSlice.o build/temp.linux-i386-3.7/layer2/ObjectSurface.o build/temp.linux-i386-3.7/layer2/ObjectVolume.o build/temp.linux-i386-3.7/layer2/RepAngle.o build/temp.linux-i386-3.7/layer2/RepCartoon.o build/temp.linux-i386-3.7/layer2/RepCylBond.o build/temp.linux-i386-3.7/layer2/RepDihedral.o build/temp.linux-i386-3.7/layer2/RepDistDash.o build/temp.linux-i386-3.7/layer2/RepDistLabel.o build/temp.linux-i386-3.7/layer2/RepDot.o build/temp.linux-i386-3.7/layer2/RepEllipsoid.o build/temp.linux-i386-3.7/layer2/RepLabel.o build/temp.linux-i386-3.7/layer2/RepMesh.o build/temp.linux-i386-3.7/layer2/RepNonbonded.o build/temp.linux-i386-3.7/layer2/RepNonbondedSphere.o build/temp.linux-i386-3.7/layer2/RepRibbon.o build/temp.linux-i386-3.7/layer2/RepSphere.o build/temp.linux-i386-3.7/layer2/RepSphereGenerate.o build/temp.linux-i386-3.7/layer2/RepSphereImmediate.o build/temp.linux-i386-3.7/layer2/RepSurface.o build/temp.linux-i386-3.7/layer2/RepWireBond.o build/temp.linux-i386-3.7/layer2/Sculpt.o build/temp.linux-i386-3.7/layer2/SculptCache.o build/temp.linux-i386-3.7/layer2/SideChainHelper.o build/temp.linux-i386-3.7/layer2/VFont.o build/temp.linux-i386-3.7/layer3/AtomIterators.o build/temp.linux-i386-3.7/layer3/CifDataValueFormatter.o build/temp.linux-i386-3.7/layer3/Editor.o build/temp.linux-i386-3.7/layer3/Executive.o build/temp.linux-i386-3.7/layer3/MaeExportHelpers.o build/temp.linux-i386-3.7/layer3/MoleculeExporter.o build/temp.linux-i386-3.7/layer3/MovieScene.o build/temp.linux-i386-3.7/layer3/PlugIOManager.o build/temp.linux-i386-3.7/layer3/Seeker.o build/temp.linux-i386-3.7/layer3/Selector.o build/temp.linux-i386-3.7/layer4/Cmd.o build/temp.linux-i386-3.7/layer4/Export.o build/temp.linux-i386-3.7/layer4/Menu.o build/temp.linux-i386-3.7/layer4/PopUp.o build/temp.linux-i386-3.7/layer5/PyMOL.o build/temp.linux-i386-3.7/layer5/TestPyMOL.o build/temp.linux-i386-3.7/layer5/main.o build/temp.linux-i386-3.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i386-3.7/ov/src/OVContext.o build/temp.linux-i386-3.7/ov/src/OVHeap.o build/temp.linux-i386-3.7/ov/src/OVHeapArray.o build/temp.linux-i386-3.7/ov/src/OVLexicon.o build/temp.linux-i386-3.7/ov/src/OVOneToAny.o build/temp.linux-i386-3.7/ov/src/OVOneToOne.o build/temp.linux-i386-3.7/ov/src/OVRandom.o build/temp.linux-i386-3.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-i386-linux-gnu.so building 'chempy.champ._champ' extension creating build/temp.linux-i386-3.7/contrib/champ i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/champ.c -o build/temp.linux-i386-3.7/contrib/champ/champ.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/champ_module.c -o build/temp.linux-i386-3.7/contrib/champ/champ_module.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/chiral.c -o build/temp.linux-i386-3.7/contrib/champ/chiral.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/list.c -o build/temp.linux-i386-3.7/contrib/champ/list.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/feedback2.c -o build/temp.linux-i386-3.7/contrib/champ/feedback2.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/err2.c -o build/temp.linux-i386-3.7/contrib/champ/err2.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/strblock.c -o build/temp.linux-i386-3.7/contrib/champ/strblock.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/os_memory.c -o build/temp.linux-i386-3.7/contrib/champ/os_memory.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/sort.c -o build/temp.linux-i386-3.7/contrib/champ/sort.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python3.7m -c contrib/champ/vla.c -o build/temp.linux-i386-3.7/contrib/champ/vla.o In file included from contrib/champ/champ_module.c:16: contrib/champ/champ_module.c: In function 'list_prepend_pattern_strings': contrib/champ/os_python.h:34:41: warning: passing argument 2 of 'ChampSmiToPat' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] # define PyString_AsString PyUnicode_AsUTF8 contrib/champ/champ_module.c:801:35: note: in expansion of macro 'PyString_AsString' pat_index = ChampSmiToPat(I,PyString_AsString(PyList_GetItem(smi_list,a))); ^~~~~~~~~~~~~~~~~ In file included from contrib/champ/champ_module.c:22: contrib/champ/champ.h:285:35: note: expected 'char *' but argument is of type 'const char *' int ChampSmiToPat(CChamp *I,char *c); ~~~~~~^ contrib/champ/champ.c: In function 'PConvPyObjectToStrMaxClean': contrib/champ/champ.c:1250:8: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] st = PyString_AsString(object); ^ contrib/champ/champ.c:1255:10: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] st = PyString_AsString(tmp); ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/contrib/champ/champ.o build/temp.linux-i386-3.7/contrib/champ/champ_module.o build/temp.linux-i386-3.7/contrib/champ/chiral.o build/temp.linux-i386-3.7/contrib/champ/err2.o build/temp.linux-i386-3.7/contrib/champ/feedback2.o build/temp.linux-i386-3.7/contrib/champ/list.o build/temp.linux-i386-3.7/contrib/champ/os_memory.o build/temp.linux-i386-3.7/contrib/champ/sort.o build/temp.linux-i386-3.7/contrib/champ/strblock.o build/temp.linux-i386-3.7/contrib/champ/vla.o -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/pymol-2.2.0+dfsg' chmod +x test/pymol-test PYBUILD_SYSTEM="custom" \ PYBUILD_BEFORE_TEST="cp -r {dir}/test {build_dir}" \ PYBUILD_AFTER_TEST="rm -rf {build_dir}/test" \ PYBUILD_TEST_ARGS="cd {build_dir}/test; PYMOL_PATH={build_dir} ./run" \ dh_auto_test I: pybuild pybuild:272: cp -r /build/pymol-2.2.0+dfsg/test /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build I: pybuild base:217: cd /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/test; PYMOL_PATH=/build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build ./run run_tests: C0001quit... run_tests: C0001quit.log DIFFERS over about 1 lines. run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... run_tests: C0020pdb.pdb is missing. run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... run_tests: C0025mol.log DIFFERS over about 3 lines. run_tests: C0026sdf... run_tests: C0026sdf.log DIFFERS over about 17 lines. run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... run_tests: C0030pkl.log DIFFERS over about 4 lines. run_tests: C0030pkl.pdb is missing. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... run_tests: C0060delete.log DIFFERS over about 19 lines. run_tests: C0070rep... run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.log DIFFERS over about 61 lines. run_tests: C0080create.1.pdb is missing. run_tests: C0080create.2.pdb is missing. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... run_tests: C0105names.log DIFFERS over about 27 lines. run_tests: C0106order... run_tests: C0106order.log DIFFERS over about 49 lines. run_tests: C0140iterate... run_tests: C0140iterate.log DIFFERS over about 23 lines. run_tests: C0150alter... run_tests: C0150alter.log DIFFERS over about 11 lines. run_tests: C0150alter.1.pdb is missing. run_tests: C0160get... run_tests: C0160get.log DIFFERS over about 42 lines. run_tests: C0170scene... run_tests: C0170scene.log DIFFERS over about 125 lines. run_tests: C0180embed... run_tests: C0180embed.log DIFFERS over about 45 lines. run_tests: C0181embed... run_tests: C0181embed.log DIFFERS over about 10 lines. run_tests: C0200feedback... run_tests: C0200feedback.log DIFFERS over about 127 lines. run_tests: C0201extend... run_tests: C0201extend.log DIFFERS over about 11 lines. run_tests: C0202help_python... run_tests: C0202help_python.log DIFFERS over about 50 lines. run_tests: C0300session... run_tests: C0300session.log DIFFERS over about 14 lines. run_tests: C0500misc... run_tests: C0500misc.log DIFFERS over about 130 lines. run_tests: C0550pseudo... run_tests: C0550pseudo.log DIFFERS over about 36 lines. run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... run_tests: C0700odd.A.pdb is missing. run_tests: C0700odd.6.pdb is missing. run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.9.pdb is missing. run_tests: C0700odd.4.pdb is missing. run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.1.pdb is missing. run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.D.pdb is missing. run_tests: C0700odd.2.pdb is missing. run_tests: C0700odd.F.pdb is missing. run_tests: C0700odd.5.pdb is missing. run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.E.pdb is missing. run_tests: C0700odd.C.pdb is missing. run_tests: C0700odd.8.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... run_tests: C0800matrices.log DIFFERS over about 141 lines. run_tests: C1000viewing... run_tests: C1000viewing.log DIFFERS over about 264 lines. run_tests: C1010helping... run_tests: C1010helping.log DIFFERS over about 27 lines. run_tests: C1020querying... run_tests: C1020querying.log DIFFERS over about 123 lines. run_tests: C1030selecting... run_tests: C1030selecting.log DIFFERS over about 63 lines. run_tests: C1035wildcards... run_tests: C1035wildcards.log DIFFERS over about 53 lines. run_tests: C1040editing... run_tests: C1040editing.log DIFFERS over about 260 lines. run_tests: C1050fitting... run_tests: C1050fitting.log DIFFERS over about 77 lines. run_tests: C1060controlling... run_tests: C1060controlling.log DIFFERS over about 7 lines. run_tests: C1070exporting... run_tests: C1070exporting.log DIFFERS over about 27 lines. run_tests: C1080isomore... run_tests: C1080isomore.log DIFFERS over about 142 lines. run_tests: C1090coulomb... run_tests: C1090coulomb.log DIFFERS over about 23 lines. run_tests: C1095slice... run_tests: C1095slice.log DIFFERS over about 33 lines. run_tests: C1100do... run_tests: C1100do.log DIFFERS over about 40 lines. run_tests: C1110matrix_mode... run_tests: C1110matrix_mode.log DIFFERS over about 127 lines. run_tests: C1200matrix_maps... run_tests: C1200matrix_maps.log DIFFERS over about 60 lines. run_tests: C1300extras... run_tests: C1300extras.log DIFFERS over about 38 lines. run_tests: C2000returns... run_tests: C2000returns.log DIFFERS over about 121 lines. I: pybuild pybuild:298: rm -rf /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/test I: pybuild pybuild:272: cp -r /build/pymol-2.2.0+dfsg/test /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build I: pybuild base:217: cd /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/test; PYMOL_PATH=/build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build ./run run_tests: C0001quit... run_tests: C0001quit.log DIFFERS over about 1 lines. run_tests: C0010hello... run_tests: C0010hello.log DIFFERS over about 1 lines. run_tests: C0020pdb... run_tests: C0020pdb.pdb is missing. run_tests: C0020pdb.log DIFFERS over about 4 lines. run_tests: C0021pdbstr... run_tests: C0021pdbstr.log DIFFERS over about 3 lines. run_tests: C0025mol... run_tests: C0025mol.log DIFFERS over about 3 lines. run_tests: C0026sdf... run_tests: C0026sdf.log DIFFERS over about 17 lines. run_tests: C0027mol2... run_tests: C0027mol2.log DIFFERS over about 36 lines. run_tests: C0030pkl... run_tests: C0030pkl.log DIFFERS over about 4 lines. run_tests: C0030pkl.pdb is missing. run_tests: C0050multi... run_tests: C0050multi.log DIFFERS over about 4 lines. run_tests: C0060delete... run_tests: C0060delete.log DIFFERS over about 19 lines. run_tests: C0070rep... run_tests: C0070rep.log DIFFERS over about 9 lines. run_tests: C0080create... run_tests: C0080create.log DIFFERS over about 61 lines. run_tests: C0080create.1.pdb is missing. run_tests: C0080create.2.pdb is missing. run_tests: C0100select... run_tests: C0100select.log DIFFERS over about 90 lines. run_tests: C0105names... run_tests: C0105names.log DIFFERS over about 27 lines. run_tests: C0106order... run_tests: C0106order.log DIFFERS over about 49 lines. run_tests: C0140iterate... run_tests: C0140iterate.log DIFFERS over about 23 lines. run_tests: C0150alter... run_tests: C0150alter.log DIFFERS over about 11 lines. run_tests: C0150alter.1.pdb is missing. run_tests: C0160get... run_tests: C0160get.log DIFFERS over about 42 lines. run_tests: C0170scene... run_tests: C0170scene.log DIFFERS over about 125 lines. run_tests: C0180embed... run_tests: C0180embed.log DIFFERS over about 45 lines. run_tests: C0181embed... run_tests: C0181embed.log DIFFERS over about 10 lines. run_tests: C0200feedback... run_tests: C0200feedback.log DIFFERS over about 127 lines. run_tests: C0201extend... run_tests: C0201extend.log DIFFERS over about 11 lines. run_tests: C0202help_python... run_tests: C0202help_python.log DIFFERS over about 50 lines. run_tests: C0300session... run_tests: C0300session.log DIFFERS over about 14 lines. run_tests: C0500misc... run_tests: C0500misc.log DIFFERS over about 130 lines. run_tests: C0550pseudo... run_tests: C0550pseudo.log DIFFERS over about 36 lines. run_tests: C0600util... run_tests: C0600util.log DIFFERS over about 27 lines. run_tests: C0700odd... run_tests: C0700odd.A.pdb is missing. run_tests: C0700odd.6.pdb is missing. run_tests: C0700odd.log DIFFERS over about 204 lines. run_tests: C0700odd.9.pdb is missing. run_tests: C0700odd.4.pdb is missing. run_tests: C0700odd.7.pdb is missing. run_tests: C0700odd.1.pdb is missing. run_tests: C0700odd.B.pdb is missing. run_tests: C0700odd.D.pdb is missing. run_tests: C0700odd.2.pdb is missing. run_tests: C0700odd.F.pdb is missing. run_tests: C0700odd.5.pdb is missing. run_tests: C0700odd.3.pdb is missing. run_tests: C0700odd.E.pdb is missing. run_tests: C0700odd.C.pdb is missing. run_tests: C0700odd.8.pdb is missing. run_tests: C0740multipdb... run_tests: C0740multipdb.log DIFFERS over about 45 lines. run_tests: C0800matrices... run_tests: C0800matrices.log DIFFERS over about 141 lines. run_tests: C1000viewing... run_tests: C1000viewing.log DIFFERS over about 264 lines. run_tests: C1010helping... run_tests: C1010helping.log DIFFERS over about 27 lines. run_tests: C1020querying... run_tests: C1020querying.log DIFFERS over about 123 lines. run_tests: C1030selecting... run_tests: C1030selecting.log DIFFERS over about 63 lines. run_tests: C1035wildcards... run_tests: C1035wildcards.log DIFFERS over about 53 lines. run_tests: C1040editing... run_tests: C1040editing.log DIFFERS over about 260 lines. run_tests: C1050fitting... run_tests: C1050fitting.log DIFFERS over about 77 lines. run_tests: C1060controlling... run_tests: C1060controlling.log DIFFERS over about 7 lines. run_tests: C1070exporting... run_tests: C1070exporting.log DIFFERS over about 27 lines. run_tests: C1080isomore... run_tests: C1080isomore.log DIFFERS over about 142 lines. run_tests: C1090coulomb... run_tests: C1090coulomb.log DIFFERS over about 23 lines. run_tests: C1095slice... run_tests: C1095slice.log DIFFERS over about 33 lines. run_tests: C1100do... run_tests: C1100do.log DIFFERS over about 40 lines. run_tests: C1110matrix_mode... run_tests: C1110matrix_mode.log DIFFERS over about 127 lines. run_tests: C1200matrix_maps... run_tests: C1200matrix_maps.log DIFFERS over about 60 lines. run_tests: C1300extras... run_tests: C1300extras.log DIFFERS over about 38 lines. run_tests: C2000returns... run_tests: C2000returns.log DIFFERS over about 121 lines. I: pybuild pybuild:298: rm -rf /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/test make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/pymol-2.2.0+dfsg/debian/python-pymol running install running build running build_py running build_ext building 'pymol._cmd' extension i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-i386-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/build/generated/ShaderText.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i386-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i386-2.7/layer0/Block.o build/temp.linux-i386-2.7/layer0/Crystal.o build/temp.linux-i386-2.7/layer0/Debug.o build/temp.linux-i386-2.7/layer0/Deferred.o build/temp.linux-i386-2.7/layer0/Err.o build/temp.linux-i386-2.7/layer0/Feedback.o build/temp.linux-i386-2.7/layer0/Field.o build/temp.linux-i386-2.7/layer0/File.o build/temp.linux-i386-2.7/layer0/GenericBuffer.o build/temp.linux-i386-2.7/layer0/GraphicsUtil.o build/temp.linux-i386-2.7/layer0/Isosurf.o build/temp.linux-i386-2.7/layer0/Map.o build/temp.linux-i386-2.7/layer0/Match.o build/temp.linux-i386-2.7/layer0/Matrix.o build/temp.linux-i386-2.7/layer0/MemoryCache.o build/temp.linux-i386-2.7/layer0/MemoryDebug.o build/temp.linux-i386-2.7/layer0/MyPNG.o build/temp.linux-i386-2.7/layer0/Parse.o build/temp.linux-i386-2.7/layer0/Pixmap.o build/temp.linux-i386-2.7/layer0/Queue.o build/temp.linux-i386-2.7/layer0/ShaderMgr.o build/temp.linux-i386-2.7/layer0/ShaderPrg.o build/temp.linux-i386-2.7/layer0/Sphere.o build/temp.linux-i386-2.7/layer0/Tetsurf.o build/temp.linux-i386-2.7/layer0/Texture.o build/temp.linux-i386-2.7/layer0/Tracker.o build/temp.linux-i386-2.7/layer0/Triangle.o build/temp.linux-i386-2.7/layer0/Util.o build/temp.linux-i386-2.7/layer0/Util2.o build/temp.linux-i386-2.7/layer0/Vector.o build/temp.linux-i386-2.7/layer0/Word.o build/temp.linux-i386-2.7/layer0/os_gl.o build/temp.linux-i386-2.7/layer1/Basis.o build/temp.linux-i386-2.7/layer1/ButMode.o build/temp.linux-i386-2.7/layer1/CGO.o build/temp.linux-i386-2.7/layer1/COLLADA.o build/temp.linux-i386-2.7/layer1/Character.o build/temp.linux-i386-2.7/layer1/Color.o build/temp.linux-i386-2.7/layer1/Control.o build/temp.linux-i386-2.7/layer1/Extrude.o build/temp.linux-i386-2.7/layer1/Font.o build/temp.linux-i386-2.7/layer1/FontGLUT.o build/temp.linux-i386-2.7/layer1/FontGLUT8x13.o build/temp.linux-i386-2.7/layer1/FontGLUT9x15.o build/temp.linux-i386-2.7/layer1/FontGLUTHel10.o build/temp.linux-i386-2.7/layer1/FontGLUTHel12.o build/temp.linux-i386-2.7/layer1/FontGLUTHel18.o build/temp.linux-i386-2.7/layer1/FontType.o build/temp.linux-i386-2.7/layer1/Movie.o build/temp.linux-i386-2.7/layer1/Ortho.o build/temp.linux-i386-2.7/layer1/P.o build/temp.linux-i386-2.7/layer1/PConv.o build/temp.linux-i386-2.7/layer1/Pop.o build/temp.linux-i386-2.7/layer1/PyMOLObject.o build/temp.linux-i386-2.7/layer1/Ray.o build/temp.linux-i386-2.7/layer1/Rep.o build/temp.linux-i386-2.7/layer1/Scene.o build/temp.linux-i386-2.7/layer1/ScenePicking.o build/temp.linux-i386-2.7/layer1/SceneRay.o build/temp.linux-i386-2.7/layer1/SceneRender.o build/temp.linux-i386-2.7/layer1/ScrollBar.o build/temp.linux-i386-2.7/layer1/Seq.o build/temp.linux-i386-2.7/layer1/Setting.o build/temp.linux-i386-2.7/layer1/Shaker.o build/temp.linux-i386-2.7/layer1/Symmetry.o build/temp.linux-i386-2.7/layer1/Text.o build/temp.linux-i386-2.7/layer1/TypeFace.o build/temp.linux-i386-2.7/layer1/View.o build/temp.linux-i386-2.7/layer1/Wizard.o build/temp.linux-i386-2.7/layer2/AssemblyHelpers.o build/temp.linux-i386-2.7/layer2/AtomInfo.o build/temp.linux-i386-2.7/layer2/AtomInfoHistory.o build/temp.linux-i386-2.7/layer2/BondTypeHistory.o build/temp.linux-i386-2.7/layer2/CifFile.o build/temp.linux-i386-2.7/layer2/CifMoleculeReader.o build/temp.linux-i386-2.7/layer2/CoordSet.o build/temp.linux-i386-2.7/layer2/DistSet.o build/temp.linux-i386-2.7/layer2/GadgetSet.o build/temp.linux-i386-2.7/layer2/HydrogenAdder.o build/temp.linux-i386-2.7/layer2/MmodTyping.o build/temp.linux-i386-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-i386-2.7/layer2/Mol2Typing.o build/temp.linux-i386-2.7/layer2/MolV3000.o build/temp.linux-i386-2.7/layer2/ObjectAlignment.o build/temp.linux-i386-2.7/layer2/ObjectCGO.o build/temp.linux-i386-2.7/layer2/ObjectCallback.o build/temp.linux-i386-2.7/layer2/ObjectDist.o build/temp.linux-i386-2.7/layer2/ObjectGadget.o build/temp.linux-i386-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-i386-2.7/layer2/ObjectGroup.o build/temp.linux-i386-2.7/layer2/ObjectMap.o build/temp.linux-i386-2.7/layer2/ObjectMesh.o build/temp.linux-i386-2.7/layer2/ObjectMolecule.o build/temp.linux-i386-2.7/layer2/ObjectMolecule2.o build/temp.linux-i386-2.7/layer2/ObjectSlice.o build/temp.linux-i386-2.7/layer2/ObjectSurface.o build/temp.linux-i386-2.7/layer2/ObjectVolume.o build/temp.linux-i386-2.7/layer2/RepAngle.o build/temp.linux-i386-2.7/layer2/RepCartoon.o build/temp.linux-i386-2.7/layer2/RepCylBond.o build/temp.linux-i386-2.7/layer2/RepDihedral.o build/temp.linux-i386-2.7/layer2/RepDistDash.o build/temp.linux-i386-2.7/layer2/RepDistLabel.o build/temp.linux-i386-2.7/layer2/RepDot.o build/temp.linux-i386-2.7/layer2/RepEllipsoid.o build/temp.linux-i386-2.7/layer2/RepLabel.o build/temp.linux-i386-2.7/layer2/RepMesh.o build/temp.linux-i386-2.7/layer2/RepNonbonded.o build/temp.linux-i386-2.7/layer2/RepNonbondedSphere.o build/temp.linux-i386-2.7/layer2/RepRibbon.o build/temp.linux-i386-2.7/layer2/RepSphere.o build/temp.linux-i386-2.7/layer2/RepSphereGenerate.o build/temp.linux-i386-2.7/layer2/RepSphereImmediate.o build/temp.linux-i386-2.7/layer2/RepSurface.o build/temp.linux-i386-2.7/layer2/RepWireBond.o build/temp.linux-i386-2.7/layer2/Sculpt.o build/temp.linux-i386-2.7/layer2/SculptCache.o build/temp.linux-i386-2.7/layer2/SideChainHelper.o build/temp.linux-i386-2.7/layer2/VFont.o build/temp.linux-i386-2.7/layer3/AtomIterators.o build/temp.linux-i386-2.7/layer3/CifDataValueFormatter.o build/temp.linux-i386-2.7/layer3/Editor.o build/temp.linux-i386-2.7/layer3/Executive.o build/temp.linux-i386-2.7/layer3/MaeExportHelpers.o build/temp.linux-i386-2.7/layer3/MoleculeExporter.o build/temp.linux-i386-2.7/layer3/MovieScene.o build/temp.linux-i386-2.7/layer3/PlugIOManager.o build/temp.linux-i386-2.7/layer3/Seeker.o build/temp.linux-i386-2.7/layer3/Selector.o build/temp.linux-i386-2.7/layer4/Cmd.o build/temp.linux-i386-2.7/layer4/Export.o build/temp.linux-i386-2.7/layer4/Menu.o build/temp.linux-i386-2.7/layer4/PopUp.o build/temp.linux-i386-2.7/layer5/PyMOL.o build/temp.linux-i386-2.7/layer5/TestPyMOL.o build/temp.linux-i386-2.7/layer5/main.o build/temp.linux-i386-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i386-2.7/ov/src/OVContext.o build/temp.linux-i386-2.7/ov/src/OVHeap.o build/temp.linux-i386-2.7/ov/src/OVHeapArray.o build/temp.linux-i386-2.7/ov/src/OVLexicon.o build/temp.linux-i386-2.7/ov/src/OVOneToAny.o build/temp.linux-i386-2.7/ov/src/OVOneToOne.o build/temp.linux-i386-2.7/ov/src/OVRandom.o build/temp.linux-i386-2.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so running install_lib creating /build/pymol-2.2.0+dfsg/debian/python-pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7 creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/io.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ/_champ.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/arc.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/completing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/importing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2 creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/solvate.py to solvate.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/io.py to io.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pdb.py to pdb.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mae.py to mae.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol.py to mol.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_amber.py to bond_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmd.py to mmd.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/pkl.py to pkl.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/map.py to map.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/lst.py to lst.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein.py to protein.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/place.py to place.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mol2.py to mol2.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/util.py to util.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bmin/state.py to state.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cpv.py to cpv.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cif.py to cif.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/state.py to state.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf/io.py to io.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mmtf/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/sdf.py to sdf.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/charge.py to charge.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/champ/assign.py to assign.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/brick.py to brick.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cex.py to cex.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/cc1.py to cc1.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/models.py to models.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/arc.py to arc.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/mass.py to mass.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/bonds.py to bonds.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/xyz.py to xyz.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/gms.py to gms.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keywords.py to keywords.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/Qt/utils.py to utils.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/completing.py to completing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/rpc.py to rpc.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selecting.py to selecting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/gui.py to gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/epymol/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/externing.py to externing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/movie.py to movie.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/_gui.py to _gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/util.py to util.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants.py to constants.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/fitting.py to fitting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/preset.py to preset.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/computing.py to computing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/viewing.py to viewing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__main__.py to __main__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/lazyio.py to lazyio.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parser.py to parser.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/moving.py to moving.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/diagnosing.py to diagnosing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/querying.py to querying.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cgo.py to cgo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xwin.py to xwin.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/morphing.py to morphing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/command.py to command.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/message.py to message.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/security.py to security.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/density.py to density.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/box.py to box.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/label.py to label.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/povray.py to povray.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/callback.py to callback.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/controlling.py to controlling.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/vfont.py to vfont.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editing.py to editing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/internal.py to internal.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/exporting.py to exporting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/pymolhttpd.py to pymolhttpd.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/setting.py to setting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/colorprinting.py to colorprinting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/m4x.py to m4x.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/importing.py to importing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/xray.py to xray.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/menu.py to menu.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/parsing.py to parsing.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/creating.py to creating.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/helping.py to helping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/checking.py to checking.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/editor.py to editor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/cmd.py to cmd.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/headering.py to headering.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/selector.py to selector.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/api.py to api.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/invocation.py to invocation.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/locking.py to locking.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol/commanding.py to commanding.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/cmd2.py to cmd2.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol2/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/volume.py to volume.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/forms/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/keymapping.py to keymapping.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/builder.py to builder.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pml.py to pml.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/python.py to python.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/TextEditor.py to TextEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/volume.py to volume.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc running install_egg_info Writing /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/lib/python2.7/dist-packages/pymol-2.2.0.egg-info creating /build/pymol-2.2.0+dfsg/debian/python-pymol/usr/bin I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/pymol-2.2.0+dfsg/debian/python3-pymol running install running build running build_py running build_ext building 'pymol._cmd' extension i686-linux-gnu-g++ -pthread -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.7m -c build/generated/ShaderText.cpp -o build/temp.linux-i386-3.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/build/generated/ShaderText.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-i386-3.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-i386-3.7/layer0/Block.o build/temp.linux-i386-3.7/layer0/Crystal.o build/temp.linux-i386-3.7/layer0/Debug.o build/temp.linux-i386-3.7/layer0/Deferred.o build/temp.linux-i386-3.7/layer0/Err.o build/temp.linux-i386-3.7/layer0/Feedback.o build/temp.linux-i386-3.7/layer0/Field.o build/temp.linux-i386-3.7/layer0/File.o build/temp.linux-i386-3.7/layer0/GenericBuffer.o build/temp.linux-i386-3.7/layer0/GraphicsUtil.o build/temp.linux-i386-3.7/layer0/Isosurf.o build/temp.linux-i386-3.7/layer0/Map.o build/temp.linux-i386-3.7/layer0/Match.o build/temp.linux-i386-3.7/layer0/Matrix.o build/temp.linux-i386-3.7/layer0/MemoryCache.o build/temp.linux-i386-3.7/layer0/MemoryDebug.o build/temp.linux-i386-3.7/layer0/MyPNG.o build/temp.linux-i386-3.7/layer0/Parse.o build/temp.linux-i386-3.7/layer0/Pixmap.o build/temp.linux-i386-3.7/layer0/Queue.o build/temp.linux-i386-3.7/layer0/ShaderMgr.o build/temp.linux-i386-3.7/layer0/ShaderPrg.o build/temp.linux-i386-3.7/layer0/Sphere.o build/temp.linux-i386-3.7/layer0/Tetsurf.o build/temp.linux-i386-3.7/layer0/Texture.o build/temp.linux-i386-3.7/layer0/Tracker.o build/temp.linux-i386-3.7/layer0/Triangle.o build/temp.linux-i386-3.7/layer0/Util.o build/temp.linux-i386-3.7/layer0/Util2.o build/temp.linux-i386-3.7/layer0/Vector.o build/temp.linux-i386-3.7/layer0/Word.o build/temp.linux-i386-3.7/layer0/os_gl.o build/temp.linux-i386-3.7/layer1/Basis.o build/temp.linux-i386-3.7/layer1/ButMode.o build/temp.linux-i386-3.7/layer1/CGO.o build/temp.linux-i386-3.7/layer1/COLLADA.o build/temp.linux-i386-3.7/layer1/Character.o build/temp.linux-i386-3.7/layer1/Color.o build/temp.linux-i386-3.7/layer1/Control.o build/temp.linux-i386-3.7/layer1/Extrude.o build/temp.linux-i386-3.7/layer1/Font.o build/temp.linux-i386-3.7/layer1/FontGLUT.o build/temp.linux-i386-3.7/layer1/FontGLUT8x13.o build/temp.linux-i386-3.7/layer1/FontGLUT9x15.o build/temp.linux-i386-3.7/layer1/FontGLUTHel10.o build/temp.linux-i386-3.7/layer1/FontGLUTHel12.o build/temp.linux-i386-3.7/layer1/FontGLUTHel18.o build/temp.linux-i386-3.7/layer1/FontType.o build/temp.linux-i386-3.7/layer1/Movie.o build/temp.linux-i386-3.7/layer1/Ortho.o build/temp.linux-i386-3.7/layer1/P.o build/temp.linux-i386-3.7/layer1/PConv.o build/temp.linux-i386-3.7/layer1/Pop.o build/temp.linux-i386-3.7/layer1/PyMOLObject.o build/temp.linux-i386-3.7/layer1/Ray.o build/temp.linux-i386-3.7/layer1/Rep.o build/temp.linux-i386-3.7/layer1/Scene.o build/temp.linux-i386-3.7/layer1/ScenePicking.o build/temp.linux-i386-3.7/layer1/SceneRay.o build/temp.linux-i386-3.7/layer1/SceneRender.o build/temp.linux-i386-3.7/layer1/ScrollBar.o build/temp.linux-i386-3.7/layer1/Seq.o build/temp.linux-i386-3.7/layer1/Setting.o build/temp.linux-i386-3.7/layer1/Shaker.o build/temp.linux-i386-3.7/layer1/Symmetry.o build/temp.linux-i386-3.7/layer1/Text.o build/temp.linux-i386-3.7/layer1/TypeFace.o build/temp.linux-i386-3.7/layer1/View.o build/temp.linux-i386-3.7/layer1/Wizard.o build/temp.linux-i386-3.7/layer2/AssemblyHelpers.o build/temp.linux-i386-3.7/layer2/AtomInfo.o build/temp.linux-i386-3.7/layer2/AtomInfoHistory.o build/temp.linux-i386-3.7/layer2/BondTypeHistory.o build/temp.linux-i386-3.7/layer2/CifFile.o build/temp.linux-i386-3.7/layer2/CifMoleculeReader.o build/temp.linux-i386-3.7/layer2/CoordSet.o build/temp.linux-i386-3.7/layer2/DistSet.o build/temp.linux-i386-3.7/layer2/GadgetSet.o build/temp.linux-i386-3.7/layer2/HydrogenAdder.o build/temp.linux-i386-3.7/layer2/MmodTyping.o build/temp.linux-i386-3.7/layer2/MmtfMoleculeReader.o build/temp.linux-i386-3.7/layer2/Mol2Typing.o build/temp.linux-i386-3.7/layer2/MolV3000.o build/temp.linux-i386-3.7/layer2/ObjectAlignment.o build/temp.linux-i386-3.7/layer2/ObjectCGO.o build/temp.linux-i386-3.7/layer2/ObjectCallback.o build/temp.linux-i386-3.7/layer2/ObjectDist.o build/temp.linux-i386-3.7/layer2/ObjectGadget.o build/temp.linux-i386-3.7/layer2/ObjectGadgetRamp.o build/temp.linux-i386-3.7/layer2/ObjectGroup.o build/temp.linux-i386-3.7/layer2/ObjectMap.o build/temp.linux-i386-3.7/layer2/ObjectMesh.o build/temp.linux-i386-3.7/layer2/ObjectMolecule.o build/temp.linux-i386-3.7/layer2/ObjectMolecule2.o build/temp.linux-i386-3.7/layer2/ObjectSlice.o build/temp.linux-i386-3.7/layer2/ObjectSurface.o build/temp.linux-i386-3.7/layer2/ObjectVolume.o build/temp.linux-i386-3.7/layer2/RepAngle.o build/temp.linux-i386-3.7/layer2/RepCartoon.o build/temp.linux-i386-3.7/layer2/RepCylBond.o build/temp.linux-i386-3.7/layer2/RepDihedral.o build/temp.linux-i386-3.7/layer2/RepDistDash.o build/temp.linux-i386-3.7/layer2/RepDistLabel.o build/temp.linux-i386-3.7/layer2/RepDot.o build/temp.linux-i386-3.7/layer2/RepEllipsoid.o build/temp.linux-i386-3.7/layer2/RepLabel.o build/temp.linux-i386-3.7/layer2/RepMesh.o build/temp.linux-i386-3.7/layer2/RepNonbonded.o build/temp.linux-i386-3.7/layer2/RepNonbondedSphere.o build/temp.linux-i386-3.7/layer2/RepRibbon.o build/temp.linux-i386-3.7/layer2/RepSphere.o build/temp.linux-i386-3.7/layer2/RepSphereGenerate.o build/temp.linux-i386-3.7/layer2/RepSphereImmediate.o build/temp.linux-i386-3.7/layer2/RepSurface.o build/temp.linux-i386-3.7/layer2/RepWireBond.o build/temp.linux-i386-3.7/layer2/Sculpt.o build/temp.linux-i386-3.7/layer2/SculptCache.o build/temp.linux-i386-3.7/layer2/SideChainHelper.o build/temp.linux-i386-3.7/layer2/VFont.o build/temp.linux-i386-3.7/layer3/AtomIterators.o build/temp.linux-i386-3.7/layer3/CifDataValueFormatter.o build/temp.linux-i386-3.7/layer3/Editor.o build/temp.linux-i386-3.7/layer3/Executive.o build/temp.linux-i386-3.7/layer3/MaeExportHelpers.o build/temp.linux-i386-3.7/layer3/MoleculeExporter.o build/temp.linux-i386-3.7/layer3/MovieScene.o build/temp.linux-i386-3.7/layer3/PlugIOManager.o build/temp.linux-i386-3.7/layer3/Seeker.o build/temp.linux-i386-3.7/layer3/Selector.o build/temp.linux-i386-3.7/layer4/Cmd.o build/temp.linux-i386-3.7/layer4/Export.o build/temp.linux-i386-3.7/layer4/Menu.o build/temp.linux-i386-3.7/layer4/PopUp.o build/temp.linux-i386-3.7/layer5/PyMOL.o build/temp.linux-i386-3.7/layer5/TestPyMOL.o build/temp.linux-i386-3.7/layer5/main.o build/temp.linux-i386-3.7/modules/cealign/src/ccealignmodule.o build/temp.linux-i386-3.7/ov/src/OVContext.o build/temp.linux-i386-3.7/ov/src/OVHeap.o build/temp.linux-i386-3.7/ov/src/OVHeapArray.o build/temp.linux-i386-3.7/ov/src/OVLexicon.o build/temp.linux-i386-3.7/ov/src/OVOneToAny.o build/temp.linux-i386-3.7/ov/src/OVOneToOne.o build/temp.linux-i386-3.7/ov/src/OVRandom.o build/temp.linux-i386-3.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-i386-linux-gnu.so running install_lib creating /build/pymol-2.2.0+dfsg/debian/python3-pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7 creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/solvate.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/io.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/water_residues.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mae.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/pkl.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bond_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_mmff.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/map.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/hetatm.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/lst.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/place.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gamess1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mol2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/commands.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bmin/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cpv.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cif.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/keyword.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/realtime.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/state.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/tinker/amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf/io.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mmtf/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/sdf.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fast/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/amber99.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/_champ.cpython-37m-i386-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/formal_charges.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/champ/assign.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/neighbor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/brick.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cex.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/cc1.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/models.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/arc.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/mass.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/bonds.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/protein_amber.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/dictdb.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/xyz.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/gms.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/chempy/fragments/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keywords.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_cmd.cpython-37m-i386-linux-gnu.so -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/shortcut.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/Qt/utils.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/completing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorramping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/rpc.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selecting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/epymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/embed/wxpymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/externing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/movie.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizarding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/util.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/fitting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/preset.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/computing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/viewing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__main__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/lazyio.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/moving.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/constants_palette.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/contrib/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/repository.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui_qt.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/managergui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/legacysupport.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/plugins/installation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/diagnosing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/stereochemistry/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/keyboard.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/querying.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cgo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/experimenting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xwin.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/morphing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/cleanup.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/mutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/renaming.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/stereodemo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/appearance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/command.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/message.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pseudoatom.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/security.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/fedora.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/nucmutagenesis.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/density.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/filter.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/dragging.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/annotation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/box.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/label.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/pair_fit.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/benchmark.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/charge.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/distance.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/toggle.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/measurement.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/sculpting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/wizard/demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/povray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/monitoring.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/callback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/controlling.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/vfont.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/internal.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/exporting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/pymolhttpd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/colorprinting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/m4x.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/importing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/xray.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/menu.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/parsing.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/gl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glut/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/glu/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/opengl/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/creating.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/helping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/checking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/editor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/cmd.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/headering.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/selector.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/feedingback.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/api.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/invocation.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/locking.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol/commanding.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/cmd2.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pymol2/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2 creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/file_dialogs.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_qt_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/askpartial.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_map.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_molecule.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_traj.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginmanager.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/pluginitem.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/movieexport.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/png.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mae.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/render.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/fetch.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/load_mtz.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/colors.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/save_object.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/forms/props.ui -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/keymapping.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/properties_dialog.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_pmg_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/pymol_gl_widget.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pml.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/pmlparser.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/python.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/syntax/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/mimic_tk.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_qt/advanced_settings_gui.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Demo.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/demo/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/ModalWindow.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/builder.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/normal/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/skins/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/Setting.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/volume.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PMGApp.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/PyMOLMapLoad.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/TextEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/SetEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/__init__.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/apbs_tools.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/startup/remote_pdb_load.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup copying /build/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build/pmg_tk/ColorEditor.py -> /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/solvate.py to solvate.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/io.py to io.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_residues.py to protein_residues.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pdb.py to pdb.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_amber.py to water_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/water_residues.py to water_residues.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mae.py to mae.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol.py to mol.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_amber.py to bond_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmd.py to mmd.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/pkl.py to pkl.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bond_mmff.py to bond_mmff.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_mmff.py to protein_mmff.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber99.py to protein_amber99.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/map.py to map.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/hetatm.py to hetatm.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/lst.py to lst.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein.py to protein.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/place.py to place.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gamess1.py to gamess1.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mol2.py to mol2.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/util.py to util.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/commands.py to commands.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/realtime.py to realtime.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bmin/state.py to state.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cpv.py to cpv.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cif.py to cif.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/keyword.py to keyword.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/realtime.py to realtime.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/state.py to state.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/tinker/amber.py to amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf/io.py to io.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mmtf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/sdf.py to sdf.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/charge.py to charge.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fast/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/amber99.py to amber99.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/formal_charges.py to formal_charges.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/champ/assign.py to assign.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/neighbor.py to neighbor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/brick.py to brick.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cex.py to cex.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/cc1.py to cc1.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/models.py to models.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/arc.py to arc.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/mass.py to mass.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/bonds.py to bonds.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/protein_amber.py to protein_amber.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/dictdb.py to dictdb.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/xyz.py to xyz.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/gms.py to gms.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/chempy/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keywords.py to keywords.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/shortcut.py to shortcut.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/Qt/utils.py to utils.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/completing.py to completing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorramping.py to colorramping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/rpc.py to rpc.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selecting.py to selecting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/gui.py to gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/epymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/embed/wxpymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/externing.py to externing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/movie.py to movie.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/_gui.py to _gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizarding.py to wizarding.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/util.py to util.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants.py to constants.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/fitting.py to fitting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/preset.py to preset.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/computing.py to computing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/viewing.py to viewing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__main__.py to __main__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/lazyio.py to lazyio.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parser.py to parser.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/moving.py to moving.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/constants_palette.py to constants_palette.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/contrib/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/repository.py to repository.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/managergui.py to managergui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/plugins/installation.py to installation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/diagnosing.py to diagnosing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/stereochemistry/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/keyboard.py to keyboard.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/querying.py to querying.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cgo.py to cgo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/experimenting.py to experimenting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xwin.py to xwin.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/morphing.py to morphing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/cleanup.py to cleanup.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/renaming.py to renaming.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/appearance.py to appearance.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/command.py to command.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/message.py to message.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/security.py to security.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/fedora.py to fedora.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/density.py to density.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/filter.py to filter.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/dragging.py to dragging.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/annotation.py to annotation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/box.py to box.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/label.py to label.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/benchmark.py to benchmark.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/charge.py to charge.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/distance.py to distance.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/toggle.py to toggle.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/measurement.py to measurement.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/sculpting.py to sculpting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/wizard/demo.py to demo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/povray.py to povray.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/monitoring.py to monitoring.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/callback.py to callback.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/controlling.py to controlling.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/vfont.py to vfont.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editing.py to editing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/internal.py to internal.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/exporting.py to exporting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/setting.py to setting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/colorprinting.py to colorprinting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/m4x.py to m4x.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/importing.py to importing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/xray.py to xray.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/menu.py to menu.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/parsing.py to parsing.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/gl/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glut/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/glu/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/opengl/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/creating.py to creating.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/helping.py to helping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/checking.py to checking.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/editor.py to editor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/cmd.py to cmd.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/headering.py to headering.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/selector.py to selector.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/feedingback.py to feedingback.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/api.py to api.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/invocation.py to invocation.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/locking.py to locking.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol/commanding.py to commanding.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/cmd2.py to cmd2.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol2/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/volume.py to volume.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/forms/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/keymapping.py to keymapping.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/builder.py to builder.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pml.py to pml.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/python.py to python.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/syntax/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Demo.py to Demo.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/builder.py to builder.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/skins/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/Setting.py to Setting.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/volume.py to volume.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PMGApp.py to PMGApp.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/TextEditor.py to TextEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/SetEditor.py to SetEditor.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/__init__.py to __init__.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.cpython-37.pyc byte-compiling /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-37.pyc running install_egg_info Writing /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/lib/python3.7/dist-packages/pymol-2.2.0.egg-info creating /build/pymol-2.2.0+dfsg/debian/python3-pymol/usr/bin debian/rules override_dh_install-arch make[1]: Entering directory '/build/pymol-2.2.0+dfsg' dh_numpy dh_numpy3 dh_install rm -rf debian/python*pymol/usr/bin make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/pymol-2.2.0+dfsg' sed -e s/@PYTHON_VERSION@/3/g < debian/pymol.launch.in > debian/pymol.launch pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./debian/pymolRef.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) No file pymol-ref-card.aux. Underfull \hbox (badness 10000) in paragraph at lines 78--79 [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] (debian/pymol-ref-card.aux) ) (see the transcript file for additional information) Output written on debian/pymol-ref-card.pdf (2 pages, 107913 bytes). Transcript written on debian/pymol-ref-card.log. dh_install install -m 755 debian/pymol.launch debian/pymol/usr/bin/pymol make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 fs:343: renaming _champ.so to _champ.i386-linux-gnu.so I: dh_python2 fs:343: renaming _cmd.so to _cmd.i386-linux-gnu.so dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installmime -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/pymol-2.2.0+dfsg' dh_compress -Xpdb make[1]: Leaving directory '/build/pymol-2.2.0+dfsg' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pymol: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pymol: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pymol: substitution variable ${python:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pymol-dbgsym' in '../python-pymol-dbgsym_2.2.0+dfsg-4_i386.deb'. dpkg-deb: building package 'pymol' in '../pymol_2.2.0+dfsg-4_all.deb'. dpkg-deb: building package 'python3-pymol' in '../python3-pymol_2.2.0+dfsg-4_i386.deb'. dpkg-deb: building package 'python-pymol' in '../python-pymol_2.2.0+dfsg-4_i386.deb'. dpkg-deb: building package 'pymol-data' in '../pymol-data_2.2.0+dfsg-4_all.deb'. dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_2.2.0+dfsg-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pymol_2.2.0+dfsg-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/18077/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/18077/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18077 and its subdirectories I: Current time: Sat Jul 31 20:02:10 +14 2021 I: pbuilder-time-stamp: 1627711330