I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 18 02:17:28 +14 2020 I: pbuilder-time-stamp: 1597666648 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [proftmb_1.1.12-8.dsc] I: copying [./proftmb_1.1.12.orig.tar.gz] I: copying [./proftmb_1.1.12-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 19 01:50:05 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proftmb_1.1.12-8.dsc dpkg-source: info: extracting proftmb in proftmb-1.1.12 dpkg-source: info: unpacking proftmb_1.1.12.orig.tar.gz dpkg-source: info: unpacking proftmb_1.1.12-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid-dnl-in-makefiles.diff dpkg-source: info: applying gcc-6.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24636/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/24636/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/24636/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=1b5d8c0d977e4931a1979c9dacb450c5 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=24636 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/pbuilderrc_NbDf --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/b2 --logfile b2/build.log proftmb_1.1.12-8.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-10-686-pae #1 SMP Debian 4.19.132-1 (2020-07-24) i686 GNU/Linux I: ls -l /bin total 5512 -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash -rwxr-xr-x 1 root root 120676 Mar 1 2019 date -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd -rwxr-xr-x 1 root root 100620 Mar 1 2019 df -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 34532 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln -rwxr-xr-x 1 root root 55400 Jul 27 2018 login -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 10 2019 more -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 18 02:20 sh -> bash lrwxrwxrwx 1 root root 4 Aug 16 22:25 sh.distrib -> dash -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty -rwsr-xr-x 1 root root 71072 Jan 10 2019 su -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch -rwxr-xr-x 1 root root 34532 Mar 1 2019 true -rwxr-xr-x 1 root root 17768 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/24636/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), help2man, libgsl-dev, opt dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on opt; however: Package opt is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libicu63{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} opt{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After unpacking 80.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 liblocale-gettext-perl i386 1.07-3+b4 [19.3 kB] Get: 8 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 11 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 12 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 14 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 25 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 31 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 32 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main i386 help2man i386 1.47.8 [177 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libgslcblas0 i386 2.5+dfsg-6 [99.2 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libgsl23 i386 2.5+dfsg-6 [855 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libgsl-dev i386 2.5+dfsg-6 [1076 kB] Get: 39 http://deb.debian.org/debian buster/main i386 opt i386 3.19-1.3+b1 [47.5 kB] Fetched 21.6 MB in 6s (3647 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-3+b4_i386.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../12-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../25-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../26-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../27-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../28-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../29-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package help2man. Preparing to unpack .../34-help2man_1.47.8_i386.deb ... Unpacking help2man (1.47.8) ... Selecting previously unselected package libgslcblas0:i386. Preparing to unpack .../35-libgslcblas0_2.5+dfsg-6_i386.deb ... Unpacking libgslcblas0:i386 (2.5+dfsg-6) ... Selecting previously unselected package libgsl23:i386. Preparing to unpack .../36-libgsl23_2.5+dfsg-6_i386.deb ... Unpacking libgsl23:i386 (2.5+dfsg-6) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../37-libgsl-dev_2.5+dfsg-6_i386.deb ... Unpacking libgsl-dev (2.5+dfsg-6) ... Selecting previously unselected package opt. Preparing to unpack .../38-opt_3.19-1.3+b1_i386.deb ... Unpacking opt (3.19-1.3+b1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libgslcblas0:i386 (2.5+dfsg-6) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libgsl23:i386 (2.5+dfsg-6) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up opt (3.19-1.3+b1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up help2man (1.47.8) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package proftmb dpkg-buildpackage: info: source version 1.1.12-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf configure.ac:9: installing './compile' configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for main in -lopt... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gsl/gsl_errno.h usability... yes checking gsl/gsl_errno.h presence... yes checking for gsl/gsl_errno.h... yes checking opt.h usability... yes checking opt.h presence... yes checking for opt.h... yes checking for an ANSI C-conforming const... yes checking for --enable-debug... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j10 make[1]: Entering directory '/build/proftmb-1.1.12' make all-recursive make[2]: Entering directory '/build/proftmb-1.1.12' Making all in examples make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/proftmb-1.1.12/examples' Making all in src make[3]: Entering directory '/build/proftmb-1.1.12/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o proftmb.o proftmb.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Backward.o Backward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaumWelch.o BaumWelch.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Eval.o Eval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectA.o ExpectA.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectC.o ExpectC.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp In file included from TrainSeq.h:5, from ExpectA.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from ExpectA.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Backward.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from BaumWelch.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from GradientDescent.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from proftmb.cpp:14: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from HTools.h:4, from Backward.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ In file included from Forward.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from BaumWelch.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Forward.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from HMMEval.h:5, from HMMEval.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from HMMEval.h:5, from HMMEval.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from proftmb.cpp:15: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from proftmb.cpp:18: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void DisplayArch(ostream&,Par&,uint,char* =""); ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void PrintEmit(ostream&,Par&,uint,char* =""); ^ In file included from proftmb.cpp:20: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Z_Calibrate(set >&,int,double) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from GradientDescent.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from HMMOutput.h:4, from HMMOutput.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from Eval.h:11, from Eval.cpp:6: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from proftmb.cpp:22: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *); ^~~~~ In file included from HMMOutput.h:5, from HMMOutput.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from Eval.h:11, from Eval.cpp:6: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ proftmb.cpp:68:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const char *, double, Par&, const char*, bool) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from ExpectC.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from HMMOutput.cpp:1: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void DisplayArch(ostream&,Par&,uint,char* =""); ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void PrintEmit(ostream&,Par&,uint,char* =""); ^ In file included from Eval.cpp:6: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *); ^~~~~ In file included from HMMOutput.cpp:2: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *); ^~~~~ In file included from TrainSeq.h:6, from ExpectC.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ proftmb.cpp:273:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const char *datfile, double cut, Par& m, const char *name, bool multiQ) throw (string &) { ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Eval.cpp:654:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp In file included from HTools.h:4, from HTools.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from HTools.h:5, from HTools.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp In file included from TrainSeq.h:5, from Load.h:4, from Load.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from Load.h:4, from Load.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Krogh1Best.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Krogh1Best.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp In file included from Par.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Params.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Par.cpp:4: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp In file included from Posterior.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Regularization.cpp:7: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.cpp:263:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadConnect(char* cf) throw (string&){ ^~~~~ In file included from Posterior.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.cpp:348:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadL2L(char* l2lfile) throw (string&){ ^~~~~ Par.cpp:415:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadL2A(char* l2afile) throw (string&){ ^~~~~ Par.cpp:554:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadA2E(char* a2efile) throw (string&){ ^~~~~ Par.cpp:652:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector& redux) throw (string&){ ^~~~~ Par.cpp:742:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::ReadZCurve(char *ifile) throw (string&){ ^~~~~ Par.cpp:763:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::ReadNullFreq(char *ifile) throw (string&){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp In file included from Seq.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Seq.cpp:4: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp Seq.cpp:99:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool Seq::InitLabels(SS& sdat) throw (string&){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp Seq.cpp:313:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] map Seq::Read(char* file) throw (string&){ ^~~~~ In file included from TrainSeq.h:5, from Tally.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from Tally.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from structs.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp In file included from TrainSeq.h:5, from TrainSeq.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from TrainSeq.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Zscore.o Zscore.cpp Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt In file included from Zscore.cpp:24: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Z_Calibrate(set >&,int,double) throw (string&); ^~~~~ In file included from Viterbi.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Viterbi.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Zscore.cpp:36:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] int windowsize,double zmax) throw (string&){ ^~~~~ rm -f libhmm.a ar cru libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libhmm.a g++ -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/proftmb-1.1.12' Making check in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making check in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j10 install DESTDIR=/build/proftmb-1.1.12/debian/proftmb AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/proftmb-1.1.12' Making install in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' /usr/bin/install -c -m 644 16761001.Q 1a0s_P.f.1.Q 1af6_A.f.2.Q 1bt9_A.f.3.Q 1fep_A.f.4.Q 1prn.f.5.Q 1qd5_A.f.6.Q 1qj9_A.f.7.Q 1qjp_A.f.8.Q CADN_HUMAN.Q example.Q example_dat.txt example_proftmb_pretty.txt example_proftmb_tabular.txt YQIB_ECOLI.Q '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' make[3]: Leaving directory '/build/proftmb-1.1.12/examples' make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making install in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12/src' /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' /usr/bin/install -c proftmb '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /usr/bin/install -c -m 644 proftmb.1 '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' cp "."/input/* "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/" /usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' rm -rf `find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -name .svn` find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type d -exec chmod 0755 {} \; find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type f -exec chmod 0644 {} \; make install-data-hook make[4]: Entering directory '/build/proftmb-1.1.12' sed --in-place -e 's|__pkgdatadir__|/usr/share/proftmb|g' "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/options" make[4]: Leaving directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/proftmb-1.1.12' dh_compress -Xexample.Q make[1]: Leaving directory '/build/proftmb-1.1.12' dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/proftmb/usr/bin/proftmb was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-8_i386.deb'. dpkg-deb: building package 'proftmb' in '../proftmb_1.1.12-8_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../proftmb_1.1.12-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/24636/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/24636/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24636 and its subdirectories I: Current time: Tue Aug 18 02:21:39 +14 2020 I: pbuilder-time-stamp: 1597666899