I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 20 06:27:55 -12 2020 I: pbuilder-time-stamp: 1597948075 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [meep-mpich2_1.7.0-3.dsc] I: copying [./meep-mpich2_1.7.0.orig.tar.gz] I: copying [./meep-mpich2_1.7.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 5 07:15:23 2019 -12 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./meep-mpich2_1.7.0-3.dsc dpkg-source: info: extracting meep-mpich2 in meep-mpich2-1.7.0 dpkg-source: info: unpacking meep-mpich2_1.7.0.orig.tar.gz dpkg-source: info: unpacking meep-mpich2_1.7.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying c++14.patch dpkg-source: info: applying fix-test.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: gfortran, debhelper (>= 11), libctl-dev (>= 4.1.4-2), pkg-config, libharminv-dev (>= 1.4.1), zlib1g-dev, libfftw3-dev, libhdf5-mpich-dev, libgsl-dev, liblapack-dev, libmpich-dev, libatlas-base-dev, chrpath, dpkg-dev (>= 1.16.1~), swig, python-dev, python-numpy, python-h5py, mpich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libctl-dev (>= 4.1.4-2); however: Package libctl-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libharminv-dev (>= 1.4.1); however: Package libharminv-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpich-dev; however: Package libhdf5-mpich-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libmpich-dev; however: Package libmpich-dev is not installed. pbuilder-satisfydepends-dummy depends on libatlas-base-dev; however: Package libatlas-base-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-h5py; however: Package python-h5py is not installed. pbuilder-satisfydepends-dummy depends on mpich; however: Package mpich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} guile-2.2{a} guile-2.2-dev{a} guile-2.2-libs{a} hwloc-nox{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libatlas-base-dev{a} libatlas3-base{a} libblas-dev{a} libblas3{a} libbsd0{a} libcroco3{a} libctl-dev{a} libctl7{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgc-dev{a} libgc1c2{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libharminv-dev{a} libharminv3{a} libhdf5-103{a} libhdf5-mpich-103{a} libhdf5-mpich-dev{a} libhwloc5{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmpich-dev{a} libmpich12{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnuma1{a} libpipeline1{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline-dev{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} mpich{a} pkg-config{a} po-debconf{a} python{a} python-dev{a} python-h5py{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-six{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig3.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libctl-doc libglib2.0-data libgpm2 libhwloc-plugins libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After unpacking 398 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2 [395 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2 [1383 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2 [103 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2 [1935 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2 [305 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgc1c2 i386 1:7.6.4-0.4 [227 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 guile-2.2-libs i386 2.2.4+1-2 [5020 kB] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 guile-2.2 i386 2.2.4+1-2 [20.2 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses-dev i386 6.1+20181013-2 [360 kB] Get: 59 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses5-dev i386 6.1+20181013-2 [936 B] Get: 60 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline-dev i386 7.0-5 [146 kB] Get: 61 http://cdn-fastly.deb.debian.org/debian buster/main i386 libltdl-dev i386 2.4.6-9 [164 kB] Get: 62 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgmpxx4ldbl i386 2:6.1.2+dfsg-4 [23.2 kB] Get: 63 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgmp-dev i386 2:6.1.2+dfsg-4 [648 kB] Get: 64 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgc-dev i386 1:7.6.4-0.4 [382 kB] Get: 65 http://cdn-fastly.deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB] Get: 66 http://cdn-fastly.deb.debian.org/debian buster/main i386 guile-2.2-dev i386 2.2.4+1-2 [665 kB] Get: 67 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnuma1 i386 2.0.12-1 [27.7 kB] Get: 68 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhwloc5 i386 1.11.12-3 [119 kB] Get: 69 http://cdn-fastly.deb.debian.org/debian buster/main i386 hwloc-nox i386 1.11.12-3 [158 kB] Get: 70 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB] Get: 71 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B] Get: 72 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB] Get: 73 http://cdn-fastly.deb.debian.org/debian buster/main i386 libatlas3-base i386 3.10.3-8 [3408 kB] Get: 74 http://cdn-fastly.deb.debian.org/debian buster/main i386 libatlas-base-dev i386 3.10.3-8 [3582 kB] Get: 75 http://cdn-fastly.deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 76 http://cdn-fastly.deb.debian.org/debian buster/main i386 libblas-dev i386 3.8.0-2 [150 kB] Get: 77 http://cdn-fastly.deb.debian.org/debian buster/main i386 libctl7 i386 4.1.4-3 [105 kB] Get: 78 http://cdn-fastly.deb.debian.org/debian buster/main i386 libctl-dev i386 4.1.4-3 [74.4 kB] Get: 79 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2 [156 kB] Get: 80 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get: 81 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get: 82 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get: 83 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get: 84 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfftw3-bin i386 3.3.8-2 [53.5 kB] Get: 85 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get: 86 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgslcblas0 i386 2.5+dfsg-6 [99.2 kB] Get: 87 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgsl23 i386 2.5+dfsg-6 [855 kB] Get: 88 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgsl-dev i386 2.5+dfsg-6 [1076 kB] Get: 89 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 90 http://cdn-fastly.deb.debian.org/debian buster/main i386 libharminv3 i386 1.4.1-2 [15.5 kB] Get: 91 http://cdn-fastly.deb.debian.org/debian buster/main i386 libharminv-dev i386 1.4.1-2 [4916 B] Get: 92 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-103 i386 1.10.4+repack-10 [1310 kB] Get: 93 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmpich12 i386 3.3-3 [1139 kB] Get: 94 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-mpich-103 i386 1.10.4+repack-10 [1347 kB] Get: 95 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 96 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 97 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 98 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 99 http://cdn-fastly.deb.debian.org/debian buster/main i386 mpich i386 3.3-3 [404 kB] Get: 100 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmpich-dev i386 3.3-3 [1473 kB] Get: 101 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-mpich-dev i386 1.10.4+repack-10 [2645 kB] Get: 102 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblapack-dev i386 3.8.0-2 [2035 kB] Get: 103 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2 [1059 kB] Get: 104 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2 [31.4 MB] Get: 105 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] Get: 106 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] Get: 107 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2 [296 kB] Get: 108 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] Get: 109 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] Get: 110 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 111 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] Get: 112 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-six all 1.12.0-1 [15.7 kB] Get: 113 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-h5py i386 2.8.0-3 [600 kB] Get: 114 http://cdn-fastly.deb.debian.org/debian buster/main i386 swig3.0 i386 3.0.12-2 [1456 kB] Get: 115 http://cdn-fastly.deb.debian.org/debian buster/main i386 swig i386 3.0.12-2 [310 kB] Fetched 111 MB in 14s (7829 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. 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Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:i386 (8.3.0-6) ... Setting up libncurses-dev:i386 (6.1+20181013-2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up swig (3.0.12-2) ... Setting up libgmp-dev:i386 (2:6.1.2+dfsg-4) ... Setting up libatlas3-base:i386 (3.10.3-8) ... update-alternatives: using /usr/lib/i386-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libtool (2.4.6-9) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libhwloc5:i386 (1.11.12-3) ... Setting up gfortran-8 (8.3.0-6) ... Setting up hwloc-nox (1.11.12-3) ... Setting up libaec-dev:i386 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up m4 (1.4.18-2) ... Setting up libreadline-dev:i386 (7.0-5) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libatlas-base-dev:i386 (3.10.3-8) ... update-alternatives: using /usr/lib/i386-linux-gnu/atlas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/atlas/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libhdf5-mpich-103:i386 (1.10.4+repack-10) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2) ... Setting up libblas3:i386 (3.8.0-2) ... Setting up libhdf5-103:i386 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up libharminv3 (1.4.1-2) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libncurses5-dev:i386 (6.1+20181013-2) ... Setting up libharminv-dev (1.4.1-2) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up guile-2.2-libs:i386 (2.2.4+1-2) ... Setting up libblas-dev:i386 (3.8.0-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython2.7:i386 (2.7.16-2) ... Setting up liblapack3:i386 (3.8.0-2) ... Setting up libpython2.7-dev:i386 (2.7.16-2) ... Setting up gettext (0.19.8.1-9) ... Setting up guile-2.2 (2.2.4+1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/guile/2.2/bin/guile to provide /usr/bin/guile (guile) in auto mode Setting up python2.7 (2.7.16-2) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up mpich (3.3-3) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libltdl-dev:i386 (2.4.6-9) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up libctl7 (4.1.4-3) ... Setting up guile-2.2-dev (2.2.4+1-2) ... update-alternatives: using /usr/bin/guile-config-2.2 to provide /usr/bin/guile-config (guile-config) in auto mode Setting up liblapack-dev:i386 (3.8.0-2) ... Setting up libmpich-dev:i386 (3.3-3) ... update-alternatives: using /usr/include/i386-linux-gnu/mpich to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up libpython2-dev:i386 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libhdf5-mpich-dev (1.10.4+repack-10) ... update-alternatives: using /usr/bin/h5pcc.mpich to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-mpich.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libctl-dev (4.1.4-3) ... Setting up libpython-dev:i386 (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up python-dev (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-h5py (2.8.0-3) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/meep-mpich2-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package meep-mpich2 dpkg-buildpackage: info: source version 1.7.0-3 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by Thorsten Alteholz dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with autoreconf debian/rules override_dh_clean make[1]: Entering directory '/build/meep-mpich2-1.7.0' # we do not need this anymore rm -f tests/latest_output rm -f libctl/meep_mpi rm -f meep_mpi.pc rm -f src/libmeep_mpi.la dh_clean make[1]: Leaving directory '/build/meep-mpich2-1.7.0' debian/rules build dh build --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:66: installing './compile' configure.ac:66: installing './config.guess' configure.ac:66: installing './config.sub' configure.ac:11: installing './install-sh' configure.ac:11: installing './missing' libmeepgeom/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' python/Makefile.am:115: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/meep-mpich2-1.7.0' F77=gfortran dh_auto_configure -- --host=i686-linux-gnu --build=i686-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --build=i686-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode configure: WARNING: unrecognized options: --enable-cxx checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for i686-linux-gnu-g++... i686-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of i686-linux-gnu-g++... none checking for mpic++... mpic++ checking for MPI_Init... yes checking for mpi.h... yes checking for extra flag needed to combine stdio.h and mpi.h... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to accept ISO C89... none needed checking whether i686-linux-gnu-gcc understands -c and -o together... yes checking dependency style of i686-linux-gnu-gcc... none checking for C++ compiler vendor... gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i686-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/i686-linux-gnu-nm -B checking the name lister (/usr/bin/i686-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i686-linux-gnu-objdump... i686-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for i686-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-linux-gnu-ar... i686-linux-gnu-ar checking for archiver @FILE support... @ checking for i686-linux-gnu-strip... i686-linux-gnu-strip checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking command to parse /usr/bin/i686-linux-gnu-nm -B output from i686-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... i686-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i686-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for i686-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if i686-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if i686-linux-gnu-gcc static flag -static works... yes checking if i686-linux-gnu-gcc supports -c -o file.o... yes checking if i686-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the i686-linux-gnu-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpic++ -E checking for ld used by mpic++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the mpic++ linker (/usr/bin/ld) supports shared libraries... yes checking for mpic++ option to produce PIC... -fPIC -DPIC checking if mpic++ PIC flag -fPIC -DPIC works... yes checking if mpic++ static flag -static works... yes checking if mpic++ supports -c -o file.o... yes checking if mpic++ supports -c -o file.o... (cached) yes checking whether the mpic++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for latex2html... no configure: WARNING: Cannot find latex2html in your path! checking for sin in -lm... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking for i686-linux-gnu-g77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... yes checking for sgemm_ in -lf77blas... yes checking for cblas_dgemm in -lcblas... yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for pkg-config... /usr/bin/pkg-config checking for harminv >= 1.1... yes checking HARMINV_CFLAGS... checking HARMINV_LIBS... -lharminv checking mpb.h usability... no checking mpb.h presence... no checking for mpb.h... no checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_sf_bessel_Jn in -lgsl... yes checking for deflate in -lz... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pset_mpi... no checking for H5Pset_fapl_mpio... yes checking for mpirun... mpirun checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for SCM_SMOB_PREDICATE... no checking for SCM_SMOB_DATA... no checking for SCM_NEWSMOB... no checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /usr/share/libctl checking for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 4.1.0... ok checking for libctl_quiet feature... yes checking for vector3_dot in -lctlgeom... yes checking libGDSII.h usability... no checking libGDSII.h presence... no checking for libGDSII.h... no checking for feenableexcept... yes checking whether feenableexcept declaration is usable... yes checking whether to catch and ignore SIGFPE signals... no checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... __restrict checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for Python include directory... /usr/include/python2.7 checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes checking for Numpy include directory... /usr/lib/python2.7/dist-packages/numpy/core/include checking for numpy/arrayobject.h... yes checking for coverage module... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating scheme/Makefile config.status: creating scheme/meep.scm config.status: creating libmeepgeom/Makefile config.status: creating libpympb/Makefile config.status: creating python/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --enable-cxx make[1]: Leaving directory '/build/meep-mpich2-1.7.0' dh_auto_build make -j18 make[1]: Entering directory '/build/meep-mpich2-1.7.0' make all-recursive make[2]: Entering directory '/build/meep-mpich2-1.7.0' Making all in src make[3]: Entering directory '/build/meep-mpich2-1.7.0/src' make sphere_quad (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-mpich2-1.7.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h make all-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time 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-ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o .libs/casimir.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o .libs/dft.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o .libs/h5file.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o .libs/bicgstab.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o .libs/integrate.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o .libs/initialize.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o .libs/integrate2.o boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': boundaries.cpp:68:5: warning: this statement may fall through [-Wimplicit-fallthrough=] switch (d) { ^~~~~~ boundaries.cpp:73:3: note: here case D3: ^~~~ dft.cpp: In function 'cdouble* meep::collapse_empty_dimensions(cdouble*, int*, int*, meep::volume)': dft.cpp:916:54: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'cdouble' {aka 'struct std::complex'}; use assignment or value-initialization instead [-Wclass-memaccess] memset(reduced_array,0,reduced_size*sizeof(cdouble)); ^ In file included from meep/vec.hpp:22, from meep.hpp:24, from dft.cpp:24: /usr/include/c++/8/complex:1221:12: note: 'cdouble' {aka 'struct std::complex'} declared here struct complex ^~~~~~~~~~~~~~~ dft.cpp: In member function 'void meep::fields::output_dft_components(meep::dft_chunk**, int, meep::volume, const char*)': dft.cpp:1030:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] if (!real_array) abort("%s:%i:out of memory(%lu)",__FILE__,__LINE__,array_size); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o control_c.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 energy_and_flux.cpp: In member function 'double meep::fields::flux_in_box_wrongH(meep::direction, const meep::volume&)': energy_and_flux.cpp:219:26: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; ~~~~~~^~~~~~~ energy_and_flux.cpp:219:26: warning: 'cH' may be used uninitialized in this function [-Wmaybe-uninitialized] energy_and_flux.cpp:219:11: warning: '*((void*)& cE +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; ~~~~~~^~~~~~~ energy_and_flux.cpp:219:11: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src 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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o .libs/monitor.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time 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-I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o output_directory.cpp: In member function 'void meep::structure::set_output_directory(const char*)': output_directory.cpp:43:10: warning: ignoring return value of 'int symlink(const char*, const char*)', declared with attribute warn_unused_result [-Wunused-result] symlink(name, symlink_name); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:115:32: warning: '.cpp' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(sourcename, buflen, "%s.cpp", stripped_name); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:125:32: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(outdirname, buflen, "%s-out", basename); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:135:32: warning: '%s' directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); ^~~~~~~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 600 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:131:36: warning: '-out-' directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(outdirname, buflen, "%s-out-%d", basename, i++); ^~~~~~~~~~~ output_directory.cpp:131:36: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 7 and 315 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o time.lo time.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o structure_dump.cpp: In member function 'void meep::structure::dump(const char*)': structure_dump.cpp:256:31: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:256:31: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:873, from structure_dump.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 susceptibility.cpp:158:13: warning: 'bool meep::lorentzian_unstable(double, double, double)' defined but not used [-Wunused-function] static bool lorentzian_unstable(double omega_0, double gamma, double dt) { ^~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic.lo step_generic.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:545:31: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:545:31: note: directive argument in the range [0, 20] structure_dump.cpp:545:31: note: directive argument in the range [0, 5] In file included from /usr/include/stdio.h:873, from structure_dump.cpp:21: /usr/include/i386-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o libmeep.la -rpath /usr/lib/i386-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo control_c.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/8/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/control_c.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/step_generic_stride1.o -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lquadmath -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -Wl,-soname -Wl,libmeep.so.12 -o .libs/libmeep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.12" && ln -s "libmeep.so.12.0.0" "libmeep.so.12") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.12.0.0" "libmeep.so") libtool: link: i686-linux-gnu-ar cru .libs/libmeep.a array_slice.o anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o control_c.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o structure_dump.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o step_generic_stride1.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: i686-linux-gnu-ranlib .libs/libmeep.a libtool: link: ( cd ".libs" && rm -f "libmeep.la" && ln -s "../libmeep.la" "libmeep.la" ) make[4]: Leaving directory '/build/meep-mpich2-1.7.0/src' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/src' Making all in tests make[3]: Entering directory '/build/meep-mpich2-1.7.0/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/meep-mpich2-1.7.0/tests' Making all in scheme make[3]: Entering directory '/build/meep-mpich2-1.7.0/scheme' gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl gen-ctl-io --cxx --swig -o ctl-io.i meep.scm /usr/share/libctl (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; perl -pe 's/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){.*$/%rename(meep_\1) meep::\1;/' ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | grep "%rename" | sort -u; echo; grep -hv typedef ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/(inline|const|extern|static) +//g' | perl -pe 's/^[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%rename(meep_\1) meep::\1;/' | grep "%rename" | sort -u; ) > meep_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; for f in ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp; do egrep "^enum" $f | perl -pe 's/enum +([A-Za-z_0-9:]+).*$/\1/g' | while read enum; do cat $f | tr -d '\n' | perl -pe 's/.*enum +'${enum}' *{([^}]*)}.*/\1/g' | perl -pe 's/= *[0-9]+//g' |tr -d ' \t' | tr ',' '\n' | perl -pe 's/^(.*)$/'"%rename(meep_${enum}_\1) meep::\1;/g"; echo; done; done;) > meep_enum_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; grep -h friend ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/^ *friend +[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%ignore \1;/' | grep "%ignore" | sort -u;) > meep_swig_bug_workaround.i Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){ <-- HERE .*$/ at -e line 1. (perl -pe 's/%rename\(([A-Za-z0-9_]*)\) *([A-Za-z0-9:_]*);$/(define \2 (\1))/' meep_enum_renames.i | perl -pe 's/[A-Za-z0-9:_]*:://g' | perl -pe 's/_/-/g' | perl -pe 's,//,;,'; echo "(define Centered Dielectric)") > meep-enums.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" patch -p0 meep_wrap.cxx < ./meep_wrap.patch patching file meep_wrap.cxx Hunk #1 succeeded at 778 (offset 27 lines). sed -i.bak '/(SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob))/ s/swig_collectable_tag, smob)/swig_collectable_tag, smob) || SCM_SMOB_PREDICATE((swig_collectable_tag \& ~0xff00), (smob))/' meep_wrap.cxx; make all-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/scheme' mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep.o `test -f 'meep.cpp' || echo './'`meep.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-structure.o `test -f 'structure.cpp' || echo './'`structure.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep_wrap.o `test -f 'meep_wrap.cxx' || echo './'`meep_wrap.cxx mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp main.cpp: In function 'char* make_name(const char*, const char*)': main.cpp:140:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ndir > 5 && !strcmp(".libs", dir+ndir-5)) ^~ main.cpp:142:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' strcpy(base0, for_base); base = basename(base0); ^~~~~~ In file included from ctl-io.h:7, from main.cpp:37: main.cpp: In function 'void main_entry(void*, int, char**)': main.cpp:202:48: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure ("subplex", (SCM (*)(void)) subplex_scm, 7, 0, 0); ^~~~~~~~~~~ main.cpp:212:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) adaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:216:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) cadaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': ctl-io.cpp:1920:50: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("square-basis-aux", (SCM (*)()) square_basis_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~ ctl-io.cpp:1921:63: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("range-overlap-with-object-aux", (SCM (*)()) range_overlap_with_object_aux, 5, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1922:67: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("display-geometric-object-info-aux", (SCM (*)()) display_geometric_object_info_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1923:63: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-periodic-object?-aux", (SCM (*)()) point_in_periodic_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1924:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("normal-to-object-aux", (SCM (*)()) normal_to_object_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1925:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ geom.cpp: In function 'boolean point_in_fixed_pobjectp(vector3, ctlio::geometric_object*)': geom.cpp:320:7: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ geom.cpp:322:3: note: here case GEOM PRISM: ^~~~ geom.cpp: In function 'vector3 normal_to_fixed_object(vector3, ctlio::geometric_object)': geom.cpp:481:7: warning: this statement may fall through [-Wimplicit-fallthrough=] } // switch ^ geom.cpp:483:3: note: here case GEOM PRISM: ^~~~ geom.cpp: In function 'int intersect_line_with_object(vector3, vector3, ctlio::geometric_object, double*)': geom.cpp:909:8: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ geom.cpp:912:3: note: here default: ^~~~~~~ structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': structure.cpp:624:10: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] mat2 = mat1; ~~~~~^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:29774:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg1 = (meep::component const) scm_to_int(argv[0]); ^ meep_wrap.cxx:29777:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg2 = (meep::component const) scm_to_int(argv[1]); ^ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' Making all in libmeepgeom make[3]: Entering directory '/build/meep-mpich2-1.7.0/libmeepgeom' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 meepgeom.cpp: In member function 'void meep_geom::geom_epsilon::eff_chi1inv_matrix(meep::component, meep_geom::symmetric_matrix*, const meep::volume&, double, int)': meepgeom.cpp:747:16: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] mat_behind = mat1; ~~~~~~~~~~~^~~~~~ meepgeom.cpp:659:17: note: 'mat1' was declared here material_type mat1, mat2; ^~~~ meepgeom.cpp:714:42: warning: 'mat2' may be used uninitialized in this function [-Wmaybe-uninitialized] (id2 == id || material_type_equal(mat2,mat)))) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ meepgeom.cpp:659:23: note: 'mat2' was declared here material_type mat1, mat2; ^~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o libmeepgeom.la -rpath /usr/lib/i386-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -Wl,-rpath -Wl,/build/meep-mpich2-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lquadmath -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeepgeom.so.12" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so.12") libtool: link: (cd ".libs" && rm -f "libmeepgeom.so" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so") libtool: link: i686-linux-gnu-ar cru .libs/libmeepgeom.a meepgeom.o GDSIIgeom.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: i686-linux-gnu-ranlib .libs/libmeepgeom.a libtool: link: ( cd ".libs" && rm -f "libmeepgeom.la" && ln -s "../libmeepgeom.la" "libmeepgeom.la" ) /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/bend-flux-ll bend-flux-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath make[3]: Leaving directory '/build/meep-mpich2-1.7.0/libmeepgeom' Making all in python make[3]: Entering directory '/build/meep-mpich2-1.7.0/python' swig -Wextra -I../src -I../libmeepgeom -I.. -outdir . -c++ -python -o meep-python.cpp ./meep.i /bin/bash: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi make all-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/python' /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o .libs/_meep_la-meep-python.o meep-python.cpp: In function 'PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:18161:103: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_abort__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_master_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82498:111: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_master_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_debug_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82537:110: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_debug_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_master_fprintf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82576:112: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_master_fprintf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-mpich2-1.7.0/src/.libs -Wl,-rpath -Wl,/build/meep-mpich2-1.7.0/libmeepgeom/.libs ../src/.libs/libmeep.so ../libmeepgeom/.libs/libmeepgeom.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lquadmath -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.12" && ln -s "_meep.so.12.0.0" "_meep.so.12") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.12.0.0" "_meep.so") libtool: link: i686-linux-gnu-ar cru .libs/_meep.a _meep_la-meep-python.o i686-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: i686-linux-gnu-ranlib .libs/_meep.a libtool: link: ( cd ".libs" && rm -f "_meep.la" && ln -s "../_meep.la" "_meep.la" ) mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./materials.py .libs/_meep.so meep make[4]: Leaving directory '/build/meep-mpich2-1.7.0/python' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/python' make[3]: Entering directory '/build/meep-mpich2-1.7.0' cp -f ./meep-pkgconfig meep.pc make[3]: Leaving directory '/build/meep-mpich2-1.7.0' make[2]: Leaving directory '/build/meep-mpich2-1.7.0' make[1]: Leaving directory '/build/meep-mpich2-1.7.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/meep-mpich2-1.7.0' echo #if [ "" = "armel" ] || \ # [ "" = "mips" ] || \ # [ "" = "mipsel" ] || \ # [ "" = "powerpc" ] || \ # [ "" = "sparc" ] ; then \ # echo "Do not make tests on this architecture" ;\ #else \ # echo "Do make tests on this architecture" ;\ # make check; \ # find; \ # cat python/test-suite.log; \ #fi # check whether testsuite runs everywhere make check; \ cat tests/test-suite.log make[2]: Entering directory '/build/meep-mpich2-1.7.0' Making check in src make[3]: Entering directory '/build/meep-mpich2-1.7.0/src' make check-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/meep-mpich2-1.7.0/src' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/src' Making check in tests make[3]: Entering directory '/build/meep-mpich2-1.7.0/tests' make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml make[4]: Entering directory '/build/meep-mpich2-1.7.0/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o aniso_disp aniso_disp.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bench.o bench.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o bench bench.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/bench bench.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bragg_transmission.o bragg_transmission.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o bragg_transmission bragg_transmission.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/bragg_transmission bragg_transmission.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 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-lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o symmetry.o symmetry.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o symmetry symmetry.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/symmetry symmetry.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o three_d.o three_d.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o three_d three_d.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/three_d three_d.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o two_dimensional.o two_dimensional.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o two_dimensional two_dimensional.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/two_dimensional two_dimensional.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o 2D_convergence.o 2D_convergence.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o 2D_convergence 2D_convergence.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/2D_convergence 2D_convergence.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5test.o h5test.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o h5test h5test.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/h5test h5test.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/mpich -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o pml.o pml.cpp pml.cpp: In function 'int check_pmlcyl(double (*)(const meep::vec&))': pml.cpp:220:10: warning: variable 'prev_refl_const' set but not used [-Wunused-but-set-variable] double prev_refl_const = 0.0, refl_const = 0.0; ^~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o .libs/pml pml.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/meep-mpich2-1.7.0/tests' make check-TESTS make[4]: Entering directory '/build/meep-mpich2-1.7.0/tests' make[5]: Entering directory '/build/meep-mpich2-1.7.0/tests' FAIL: aniso_disp FAIL: bench FAIL: bragg_transmission FAIL: convergence_cyl_waveguide FAIL: cylindrical FAIL: flux FAIL: harmonics FAIL: integrate FAIL: known_results FAIL: near2far FAIL: one_dimensional FAIL: physical FAIL: stress_tensor FAIL: symmetry FAIL: three_d FAIL: two_dimensional FAIL: 2D_convergence FAIL: h5test FAIL: pml ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 19 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 19 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log Please report to meep@ab-initio.mit.edu ============================================================================ make[5]: *** [Makefile:941: test-suite.log] Error 1 make[5]: Leaving directory '/build/meep-mpich2-1.7.0/tests' make[4]: *** [Makefile:1049: check-TESTS] Error 2 make[4]: Leaving directory '/build/meep-mpich2-1.7.0/tests' make[3]: *** [Makefile:1249: check-am] Error 2 make[3]: Leaving directory '/build/meep-mpich2-1.7.0/tests' make[2]: *** [Makefile:508: check-recursive] Error 1 make[2]: Leaving directory '/build/meep-mpich2-1.7.0' ====================================== meep 1.7.0: tests/test-suite.log ====================================== # TOTAL: 19 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 19 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: aniso_disp ================ Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL aniso_disp (exit status: 15) FAIL: bench =========== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL bench (exit status: 15) FAIL: bragg_transmission ======================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL bragg_transmission (exit status: 15) FAIL: convergence_cyl_waveguide =============================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL convergence_cyl_waveguide (exit status: 15) FAIL: cylindrical ================= Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL cylindrical (exit status: 15) FAIL: flux ========== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL flux (exit status: 15) FAIL: harmonics =============== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL harmonics (exit status: 15) FAIL: integrate =============== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL integrate (exit status: 15) FAIL: known_results =================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL known_results (exit status: 15) FAIL: near2far ============== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL near2far (exit status: 15) FAIL: one_dimensional ===================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL one_dimensional (exit status: 15) FAIL: physical ============== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL physical (exit status: 15) FAIL: stress_tensor =================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL stress_tensor (exit status: 15) FAIL: symmetry ============== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL symmetry (exit status: 15) FAIL: three_d ============= Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL three_d (exit status: 15) FAIL: two_dimensional ===================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL two_dimensional (exit status: 15) FAIL: 2D_convergence ==================== Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL 2D_convergence (exit status: 15) FAIL: h5test ============ Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL h5test (exit status: 15) FAIL: pml ========= Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) Fatal error in PMPI_Init: Other MPI error, error stack: MPIR_Init_thread(565)..............: MPID_Init(224).....................: channel initialization failed MPIDI_CH3_Init(105)................: MPID_nem_init(324).................: MPID_nem_tcp_init(178).............: MPID_nem_tcp_get_business_card(425): MPID_nem_tcp_init(384).............: gethostbyname failed, profitbricks-build6-i386 (errno 2) FAIL pml (exit status: 15) make[1]: Leaving directory '/build/meep-mpich2-1.7.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/meep-mpich2-1.7.0' dh_installchangelogs NEWS.md dh_auto_install make -j1 install DESTDIR=/build/meep-mpich2-1.7.0/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/meep-mpich2-1.7.0' Making install in src make[3]: Entering directory '/build/meep-mpich2-1.7.0/src' make install-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/src' make[5]: Entering directory '/build/meep-mpich2-1.7.0/src' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.12.0.0 /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so.12 || { rm -f libmeep.so.12 && ln -s libmeep.so.12.0.0 libmeep.so.12; }; }) libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.12.0.0 libmeep.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeep.lai /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.la libtool: install: /usr/bin/install -c .libs/libmeep.a /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: install: chmod 644 /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: install: i686-linux-gnu-ranlib /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/include' /usr/bin/install -c -m 644 meep.hpp '/build/meep-mpich2-1.7.0/debian/tmp/usr/include' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meep/mympi.hpp meep/vec.hpp '/build/meep-mpich2-1.7.0/debian/tmp/usr/include/meep' make[5]: Leaving directory '/build/meep-mpich2-1.7.0/src' make[4]: Leaving directory '/build/meep-mpich2-1.7.0/src' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/src' Making install in tests make[3]: Entering directory '/build/meep-mpich2-1.7.0/tests' make[4]: Entering directory '/build/meep-mpich2-1.7.0/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/meep-mpich2-1.7.0/tests' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/tests' Making install in scheme make[3]: Entering directory '/build/meep-mpich2-1.7.0/scheme' make install-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/scheme' make[5]: Entering directory '/build/meep-mpich2-1.7.0/scheme' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-mpich2-1.7.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-mpich2-1.7.0/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/share/meep' /usr/bin/install -c -m 644 meep.scm meep-enums.scm casimir.scm materials.scm '/build/meep-mpich2-1.7.0/debian/tmp/usr/share/meep' make[5]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' make[4]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/scheme' Making install in libmeepgeom make[3]: Entering directory '/build/meep-mpich2-1.7.0/libmeepgeom' make[4]: Entering directory '/build/meep-mpich2-1.7.0/libmeepgeom' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu' libtool: warning: relinking 'libmeepgeom.la' libtool: install: (cd /build/meep-mpich2-1.7.0/libmeepgeom; /bin/bash "/build/meep-mpich2-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o libmeepgeom.la -rpath /usr/lib/i386-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-mpich2-1.7.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -L/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lmeep -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lquadmath -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libmeepgeom.so.12.0.0T /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so.12 || { rm -f libmeepgeom.so.12 && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so.12; }; }) libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so || { rm -f libmeepgeom.so && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeepgeom.lai /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeepgeom.la libtool: install: /usr/bin/install -c .libs/libmeepgeom.a /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeepgeom.a libtool: install: chmod 644 /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeepgeom.a libtool: install: i686-linux-gnu-ranlib /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/libmeepgeom.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meepgeom.hpp material_data.hpp '/build/meep-mpich2-1.7.0/debian/tmp/usr/include/meep' make[4]: Leaving directory '/build/meep-mpich2-1.7.0/libmeepgeom' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/libmeepgeom' Making install in python make[3]: Entering directory '/build/meep-mpich2-1.7.0/python' make install-am make[4]: Entering directory '/build/meep-mpich2-1.7.0/python' make[5]: Entering directory '/build/meep-mpich2-1.7.0/python' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' libtool: warning: relinking '_meep.la' libtool: install: (cd /build/meep-mpich2-1.7.0/python; /bin/bash "/build/meep-mpich2-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpich2-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/meep-mpich2-1.7.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lmeep -lmeepgeom -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -L/usr/lib/i386-linux-gnu/hdf5/mpich -lfftw3 -lgfortran -lquadmath -lmpichcxx -lmpich -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/mpich -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.12.0.0T /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so.12 || { rm -f _meep.so.12 && ln -s _meep.so.12.0.0 _meep.so.12; }; }) libtool: install: (cd /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so || { rm -f _meep.so && ln -s _meep.so.12.0.0 _meep.so; }; }) libtool: install: /usr/bin/install -c .libs/_meep.lai /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.la libtool: install: /usr/bin/install -c .libs/_meep.a /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: chmod 644 /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: i686-linux-gnu-ranlib /build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python2.7/dist-packages/meep' /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' /usr/bin/install -c -m 644 geom.py __init__.py source.py simulation.py materials.py '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' Byte-compiling python modules... geom.py__init__.pysource.pysimulation.pymaterials.py Byte-compiling python modules (optimized versions) ... geom.py__init__.pysource.pysimulation.pymaterials.py make install-data-hook make[6]: Entering directory '/build/meep-mpich2-1.7.0/python' make[6]: Nothing to be done for 'install-data-hook'. make[6]: Leaving directory '/build/meep-mpich2-1.7.0/python' make[5]: Leaving directory '/build/meep-mpich2-1.7.0/python' make[4]: Leaving directory '/build/meep-mpich2-1.7.0/python' make[3]: Leaving directory '/build/meep-mpich2-1.7.0/python' make[3]: Entering directory '/build/meep-mpich2-1.7.0' make[4]: Entering directory '/build/meep-mpich2-1.7.0' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 meep.pc '/build/meep-mpich2-1.7.0/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[4]: Leaving directory '/build/meep-mpich2-1.7.0' make[3]: Leaving directory '/build/meep-mpich2-1.7.0' make[2]: Leaving directory '/build/meep-mpich2-1.7.0' rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.a rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.la rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.pyc rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.pyo rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.a rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.la make[1]: Leaving directory '/build/meep-mpich2-1.7.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol PyFunction_Type: it's probably a plugin dpkg-shlibdeps: warning: 111 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libfftw3.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against liblapack.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libhdf5_mpich.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libharminv.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpichcxx.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libf77blas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgsl.so.23 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libatlas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libquadmath.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpich.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpich2/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: symbol create_geom_box_tree0 used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol normal_to_fixed_object used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geom_box_tree_stats used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol adaptive_integration used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol display_geom_box_tree used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geom_initialize used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol make_sphere used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol box_overlap_with_object used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol vector3_equal used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol dimensions used by debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libquadmath.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libf77blas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libmpichcxx.so.12 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpich2-12/usr/lib/i386-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libmpichcxx.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libfftw3.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libharminv.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgsl.so.23 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libquadmath.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libgc.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against liblapack.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libmpich.so.12 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libhdf5_mpich.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpich2/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libmeep-mpich2-12' in '../libmeep-mpich2-12_1.7.0-3_i386.deb'. dpkg-deb: building package 'meep-mpich2-dbgsym' in '../meep-mpich2-dbgsym_1.7.0-3_i386.deb'. dpkg-deb: building package 'meep-mpich2' in '../meep-mpich2_1.7.0-3_i386.deb'. dpkg-deb: building package 'libmeep-mpich2-dev' in '../libmeep-mpich2-dev_1.7.0-3_i386.deb'. dpkg-deb: building package 'libmeep-mpich2-12-dbgsym' in '../libmeep-mpich2-12-dbgsym_1.7.0-3_i386.deb'. dpkg-deb: building package 'python-meep-mpich2' in '../python-meep-mpich2_1.7.0-3_i386.deb'. dpkg-deb: building package 'python-meep-mpich2-dbgsym' in '../python-meep-mpich2-dbgsym_1.7.0-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep-mpich2_1.7.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12376 and its subdirectories I: Current time: Thu Aug 20 06:31:45 -12 2020 I: pbuilder-time-stamp: 1597948305