I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 14 02:34:49 -12 2019 I: pbuilder-time-stamp: 1560522889 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [lucy_1.20-1.dsc] I: copying [./lucy_1.20.orig.tar.gz] I: copying [./lucy_1.20-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Sep 5 20:59:45 2018 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lucy_1.20-1.dsc dpkg-source: info: extracting lucy in lucy-1.20 dpkg-source: info: unpacking lucy_1.20.orig.tar.gz dpkg-source: info: unpacking lucy_1.20-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying helpingMakefile.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.3 MB in 19s (1025 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/lucy-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lucy dpkg-buildpackage: info: source version 1.20-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/lucy-1.20' rm -f lucy.o qual_trim.o abi.o vector.o splice.o poly.o lucy make[1]: Leaving directory '/build/lucy-1.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lucy.substvars debian/files rm -fr -- debian/lucy/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lucy-1.20' cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lucy.o lucy.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qual_trim.o qual_trim.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abi.o abi.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o splice.o splice.c cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o poly.o poly.c done! abi.c:24:8: warning: type defaults to 'int' in declaration of 'condition' [-Wimplicit-int] static condition[]={ ^~~~~~~~~ abi.c: In function 'abi_code': abi.c:70:15: warning: implicit declaration of function 'random' [-Wimplicit-function-declaration] case 5: tmp=random()%2 ? 2 : 0; break; ^~~~~~ abi.c:82:5: warning: implicit declaration of function 'giveup' [-Wimplicit-function-declaration] giveup("how can other cases happen in tag_code?"); ^~~~~~ abi.c: In function 'abi_align': abi.c:195:16: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:195:22: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:221:16: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:221:22: warning: array subscript has type 'char' [-Wchar-subscripts] if (badness[a[i]][b[j]]) { ^ abi.c:226:37: warning: array subscript has type 'char' [-Wchar-subscripts] l=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:294:36: warning: array subscript has type 'char' [-Wchar-subscripts] l>=0 && r>=0 && badness[a[l]][b[r]]==0 ^ splice.c: In function 'splice_align_left': abi.c:301:21: warning: array subscript has type 'char' [-Wchar-subscripts] if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 ^ splice.c:68:31: warning: array subscript has type 'char' [-Wchar-subscripts] Score(0,0)=max_score=match[*a][*b]; ^ abi.c:313:36: warning: array subscript has type 'char' [-Wchar-subscripts] l>=0 && r>=0 && badness[a[l]][b[r]]==0 ^ splice.c:68:35: warning: array subscript has type 'char' [-Wchar-subscripts] Score(0,0)=max_score=match[*a][*b]; ^ splice.c:75:18: warning: array subscript has type 'char' [-Wchar-subscripts] score=match[a[i]][*b]; ^ splice.c:75:24: warning: array subscript has type 'char' [-Wchar-subscripts] score=match[a[i]][*b]; ^ abi.c:320:21: warning: array subscript has type 'char' [-Wchar-subscripts] if ((count+=badness[a[l]][b[r]])=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:334:36: warning: array subscript has type 'char' [-Wchar-subscripts] l>=0 && r>=0 && badness[a[l]][b[r]]==0 ^ abi.c:341:21: warning: array subscript has type 'char' [-Wchar-subscripts] if ((count+=badness[a[l]][b[r]])=span && j>=width-max_i || j>height/2) ~~~~~~~~^~~~~~~~~~~~~~~~~ vector.c: In function 'construct_vector_tags': vector.c:85:30: warning: array subscript has type 'char' [-Wchar-subscripts] accr|=tag_code(rev_code[seq[len-k%len-1]]); ^ poly.c: In function 'poly_at_left': poly.c:22:9: warning: implicit declaration of function 'abi_code' [-Wimplicit-function-declaration] if (abi_code(*seq)==T) { ^~~~~~~~ lucy.c: In function 'hashstring': lucy.c:111:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (g = value&0xF0000000) { ^ vector.c: In function 'tag_code': vector.c:44:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] return tmp; ^~~ lucy.c: In function 'work_splice': lucy.c:206:5: warning: implicit declaration of function 'splice_align_left' [-Wimplicit-function-declaration] splice_align_left(id, target_seq[id], ^~~~~~~~~~~~~~~~~ lucy.c:247:7: warning: implicit declaration of function 'splice_align_right' [-Wimplicit-function-declaration] splice_align_right(id, target_seq[id]+seqs[i].left, ^~~~~~~~~~~~~~~~~~ lucy.c: At top level: lucy.c:284:1: warning: return type defaults to 'int' [-Wimplicit-int] main (argc, argv) ^~~~ lucy.c: In function 'main': lucy.c:361:9: warning: implicit declaration of function 'set_bracket' [-Wimplicit-function-declaration] set_bracket(bracket_size, bracket_err); ^~~~~~~~~~~ lucy.c:469:5: warning: implicit declaration of function 'default_windows' [-Wimplicit-function-declaration] default_windows(); ^~~~~~~~~~~~~~~ lucy.c:639:7: warning: implicit declaration of function 'quality_trim' [-Wimplicit-function-declaration] quality_trim(conf_val_raw, j, minimum, &(ptr->left), &(ptr->right)); ^~~~~~~~~~~~ lucy.c:669:5: warning: implicit declaration of function 'prepare_abi_mask' [-Wimplicit-function-declaration] prepare_abi_mask(); ^~~~~~~~~~~~~~~~ lucy.c:713:2: warning: implicit declaration of function 'abi_align' [-Wimplicit-function-declaration] abi_align(phred_seq, ptr->len, abi_seq, bases, &left, &right); ^~~~~~~~~ qual_trim.c:214:1: warning: "/*" within comment [-Wcomment] /* Determines some number of candidate clean ranges using a particular qual_trim.c:215:1: warning: "/*" within comment [-Wcomment] /* window size. qual_trim.c:216:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:217:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:218:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:219:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:220:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:332:1: warning: "/*" within comment [-Wcomment] /* Finds the largest subsequence of a sequence whose average probability qual_trim.c:333:1: warning: "/*" within comment [-Wcomment] /* of error does not exceed a specified maximum. qual_trim.c:334:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:335:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:336:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:337:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:338:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:339:1: warning: "/*" within comment [-Wcomment] /* lucy.c:891:7: warning: implicit declaration of function 'poly_at_left' [-Wimplicit-function-declaration] left=poly_at_left(&phred_seq[seqs[i].left], ^~~~~~~~~~~~ qual_trim.c:434:1: warning: "/*" within comment [-Wcomment] /* Determines a single clean range, after recursively considering all of qual_trim.c:435:1: warning: "/*" within comment [-Wcomment] /* the specified window sizes. Calls average_error_trim to trim the qual_trim.c:436:1: warning: "/*" within comment [-Wcomment] /* results of the final window based on overall average probability of qual_trim.c:437:1: warning: "/*" within comment [-Wcomment] /* error. qual_trim.c:438:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:439:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:440:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:441:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:442:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:443:1: warning: "/*" within comment [-Wcomment] /* lucy.c:894:8: warning: implicit declaration of function 'poly_at_right' [-Wimplicit-function-declaration] right=poly_at_right(&phred_seq[seqs[i].right], ^~~~~~~~~~~~~ qual_trim.c:569:1: warning: "/*" within comment [-Wcomment] /* Sets the window size and average probability of error allowed for the qual_trim.c:570:1: warning: "/*" within comment [-Wcomment] /* terminal windows that "bracket" the candidate clean range. qual_trim.c:571:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:572:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:573:1: warning: "/*" within comment [-Wcomment] /* int bracket_window, (size of terminal window) qual_trim.c:574:1: warning: "/*" within comment [-Wcomment] /* double bracket_error (allowable average prob. error in window) qual_trim.c:575:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:587:1: warning: "/*" within comment [-Wcomment] /* Finds the leftmost window, and the rightmost window, which meet the qual_trim.c:588:1: warning: "/*" within comment [-Wcomment] /* specified error criterion. The purpose of this function is to bracket qual_trim.c:589:1: warning: "/*" within comment [-Wcomment] /* the portion of the sequence that is of decent quality -- i.e. to qual_trim.c:590:1: warning: "/*" within comment [-Wcomment] /* eliminate the really bad quality stuff that is often found on either qual_trim.c:591:1: warning: "/*" within comment [-Wcomment] /* end. The beginning of the first matching window, and the end of the qual_trim.c:592:1: warning: "/*" within comment [-Wcomment] /* last, bracket the sequence range that will be looked at to find the qual_trim.c:593:1: warning: "/*" within comment [-Wcomment] /* final clean range. qual_trim.c:594:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:595:1: warning: "/*" within comment [-Wcomment] /* This function is called before the multi_window_trim function, and qual_trim.c:596:1: warning: "/*" within comment [-Wcomment] /* its results are used to limit the range of sequence that will be qual_trim.c:597:1: warning: "/*" within comment [-Wcomment] /* considered by that function. qual_trim.c:598:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:678:1: warning: "/*" within comment [-Wcomment] /* Determines the clean range. Calls multi_window_trim, which calls both qual_trim.c:679:1: warning: "/*" within comment [-Wcomment] /* window_trim and average_error_trim. qual_trim.c:680:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:681:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:682:1: warning: "/*" within comment [-Wcomment] /* int num_windows, (number of windows) qual_trim.c:683:1: warning: "/*" within comment [-Wcomment] /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:684:1: warning: "/*" within comment [-Wcomment] /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:685:1: warning: "/*" within comment [-Wcomment] /* ( for each window size) qual_trim.c:686:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:687:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:688:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:689:1: warning: "/*" within comment [-Wcomment] /* int bracket_window, (size of terminal window) qual_trim.c:690:1: warning: "/*" within comment [-Wcomment] /* double bracket_error (allowable average prob. error in window) qual_trim.c:691:1: warning: "/*" within comment [-Wcomment] /* lucy.c:934:5: warning: implicit declaration of function 'construct_vector_tags' [-Wimplicit-function-declaration] construct_vector_tags(vec_seq, bases); ^~~~~~~~~~~~~~~~~~~~~ qual_trim.c: In function 'quality_trim': qual_trim.c:705:14: warning: unused variable 'sum' [-Wunused-variable] double err, sum; ^~~ qual_trim.c:705:9: warning: unused variable 'err' [-Wunused-variable] double err, sum; ^~~ qual_trim.c: At top level: qual_trim.c:792:1: warning: "/*" within comment [-Wcomment] /* Sets up 3 windows for quality trimming, with the average error allowed qual_trim.c:793:1: warning: "/*" within comment [-Wcomment] /* in each window calculated from max_avg_error. qual_trim.c:794:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:795:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:796:1: warning: "/*" within comment [-Wcomment] /* int num_windows, (number of windows) qual_trim.c:797:1: warning: "/*" within comment [-Wcomment] /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:798:1: warning: "/*" within comment [-Wcomment] /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:799:1: warning: "/*" within comment [-Wcomment] /* (for each window size) qual_trim.c:800:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:801:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:826:1: warning: "/*" within comment [-Wcomment] /* Simulates the functionality of the old grim() function, by calling qual_trim.c:827:1: warning: "/*" within comment [-Wcomment] /* quality_trim(). qual_trim.c:828:1: warning: "/*" within comment [-Wcomment] /* qual_trim.c:829:1: warning: "/*" within comment [-Wcomment] /* Globals used: qual_trim.c:830:1: warning: "/*" within comment [-Wcomment] /* int num_windows, (number of windows) qual_trim.c:831:1: warning: "/*" within comment [-Wcomment] /* int *windows, (array of window sizes (largest to smallest)) qual_trim.c:832:1: warning: "/*" within comment [-Wcomment] /* double *err_limits, (array of maximum allowed average probability) qual_trim.c:833:1: warning: "/*" within comment [-Wcomment] /* (for each window size) lucy.c:947:4: warning: implicit declaration of function 'match_vector_tags' [-Wimplicit-function-declaration] j=match_vector_tags(phred_seq+seqs[i].left, bases); ^~~~~~~~~~~~~~~~~ qual_trim.c:834:1: warning: "/*" within comment [-Wcomment] /* double max_avg_error, (maximum allowed average probability of error) qual_trim.c:835:1: warning: "/*" within comment [-Wcomment] /* double end_limit, (maximum allowed probability of error for bases) qual_trim.c:836:1: warning: "/*" within comment [-Wcomment] /* ( at each end of clean range) qual_trim.c:837:1: warning: "/*" within comment [-Wcomment] /* lucy.c:959:5: warning: implicit declaration of function 'destroy_vector_tags' [-Wimplicit-function-declaration] destroy_vector_tags(); ^~~~~~~~~~~~~~~~~~~ abi.c: In function 'abi_code': abi.c:84:10: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] return tmp; ^~~ lucy.c:631:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf, BUFFER_LENGTH, qul_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f lucy cc -g -O2 -ffile-prefix-map=/build/lucy-1.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -o lucy lucy.o qual_trim.o abi.o vector.o splice.o poly.o -lpthread make[1]: Leaving directory '/build/lucy-1.20' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/lucy.substvars rm -fr -- debian/.debhelper/generated/lucy/ debian/lucy/ debian/tmp/ dh_auto_install install -d /build/lucy-1.20/debian/lucy dh_install install -d debian/lucy/usr/bin cp --reflink=auto -a ./lucy debian/lucy/usr/bin/ install -d debian/.debhelper/generated/lucy dh_installdocs install -d debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.Debian debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./debian/README.source debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./README.FIRST debian/lucy/usr/share/doc/lucy cp --reflink=auto -a ./HISTORY debian/lucy/usr/share/doc/lucy chown -R 0:0 debian/lucy/usr/share/doc chmod -R u\+rw,go=rX debian/lucy/usr/share/doc install -p -m0644 debian/README.Debian debian/lucy/usr/share/doc/lucy/README.Debian install -p -m0644 debian/copyright debian/lucy/usr/share/doc/lucy/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/lucy/usr/share/doc/lucy/changelog.Debian mv debian/lucy/usr/share/doc/lucy/HISTORY debian/lucy/usr/share/doc/lucy/changelog chmod 0644 -- debian/lucy/usr/share/doc/lucy/changelog chown 0:0 -- debian/lucy/usr/share/doc/lucy/changelog dh_installman install -d debian/lucy/usr/share/man/man1/ install -p -m0644 ./lucy.1 debian/lucy/usr/share/man/man1/lucy.1 man -l --recode UTF-8 ./debian/lucy/usr/share/man/man1/lucy.1 > debian/lucy/usr/share/man/man1/lucy.1.dh-new mv debian/lucy/usr/share/man/man1/lucy.1.dh-new debian/lucy/usr/share/man/man1/lucy.1 chmod 0644 -- debian/lucy/usr/share/man/man1/lucy.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/lucy chmod a-x usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 gzip -9nf usr/share/doc/lucy/README.FIRST usr/share/doc/lucy/changelog usr/share/doc/lucy/changelog.Debian usr/share/man/man1/lucy.1 cd '/build/lucy-1.20' dh_fixperms find debian/lucy -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/lucy ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/lucy/usr/share/doc -type f -a -true -a ! -regex 'debian/lucy/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/lucy/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/lucy/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip install -d debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/lucy/usr/bin/lucy debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/c2/1c33678c674bc5778ead4b1f53ca9f4efec60f.debug chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/c2/1c33678c674bc5778ead4b1f53ca9f4efec60f.debug chown 0:0 -- debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/c2/1c33678c674bc5778ead4b1f53ca9f4efec60f.debug strip --remove-section=.comment --remove-section=.note debian/lucy/usr/bin/lucy objcopy --add-gnu-debuglink debian/.debhelper/lucy/dbgsym-root/usr/lib/debug/.build-id/c2/1c33678c674bc5778ead4b1f53ca9f4efec60f.debug debian/lucy/usr/bin/lucy install -d debian/.debhelper/lucy/dbgsym-root/usr/share/doc ln -s lucy debian/.debhelper/lucy/dbgsym-root/usr/share/doc/lucy-dbgsym dh_makeshlibs rm -f debian/lucy/DEBIAN/shlibs dh_shlibdeps install -d debian/lucy/DEBIAN dpkg-shlibdeps -Tdebian/lucy.substvars debian/lucy/usr/bin/lucy dh_installdeb dh_gencontrol echo misc:Depends= >> debian/lucy.substvars echo misc:Pre-Depends= >> debian/lucy.substvars install -d debian/.debhelper/lucy/dbgsym-root/DEBIAN dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -Pdebian/.debhelper/lucy/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=lucy-dbgsym "-DDepends=lucy (= \${binary:Version})" "-DDescription=debug symbols for lucy" -DBuild-Ids=c21c33678c674bc5778ead4b1f53ca9f4efec60f -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/control dpkg-gencontrol -plucy -ldebian/changelog -Tdebian/lucy.substvars -Pdebian/lucy -UMulti-Arch chmod 0644 -- debian/lucy/DEBIAN/control chown 0:0 -- debian/lucy/DEBIAN/control dh_md5sums cd debian/lucy >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lucy/DEBIAN/md5sums chown 0:0 -- debian/lucy/DEBIAN/md5sums cd debian/.debhelper/lucy/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/lucy/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/lucy .. dpkg-deb --build debian/.debhelper/lucy/dbgsym-root .. dpkg-deb: building package 'lucy' in '../lucy_1.20-1_i386.deb'. dpkg-deb: building package 'lucy-dbgsym' in '../lucy-dbgsym_1.20-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lucy_1.20-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14840 and its subdirectories I: Current time: Fri Jun 14 02:46:53 -12 2019 I: pbuilder-time-stamp: 1560523613