I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 12 19:29:53 +14 2020 I: pbuilder-time-stamp: 1586669393 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libpll_0.3.2-2.dsc] I: copying [./libpll_0.3.2.orig.tar.gz] I: copying [./libpll_0.3.2-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Jun 24 08:21:21 2018 +14 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpll_0.3.2-2.dsc dpkg-source: info: extracting libpll in libpll-0.3.2 dpkg-source: info: unpacking libpll_0.3.2.orig.tar.gz dpkg-source: info: unpacking libpll_0.3.2-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20006/tmp/hooks/D01_modify_environment starting disorder-fs debug: Running on profitbricks-build2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/20006/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), d-shlibs, bison, flex, autoconf-archive dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbison-dev{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libfl-dev libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 21.9 MB of archives. After unpacking 80.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 autoconf-archive all 20180313-1 [749 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 9 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 10 http://deb.debian.org/debian buster/main i386 flex i386 2.6.4-6.2 [446 kB] Get: 11 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 14 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 15 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 16 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 19 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libbison-dev i386 2:3.3.2.dfsg-1 [500 kB] Get: 21 http://deb.debian.org/debian buster/main i386 bison i386 2:3.3.2.dfsg-1 [877 kB] Get: 22 http://deb.debian.org/debian buster/main i386 d-shlibs all 0.84 [17.2 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 27 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 29 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 35 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 36 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 37 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 38 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 21.9 MB in 4s (6093 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up d-shlibs (0.84) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up bison (2:3.3.2.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up flex (2.6.4-6.2) ... Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libpll dpkg-buildpackage: info: source version 0.3.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf aclocal: installing 'm4/libtool.m4' from '/usr/share/aclocal/libtool.m4' aclocal: installing 'm4/ltoptions.m4' from '/usr/share/aclocal/ltoptions.m4' aclocal: installing 'm4/ltsugar.m4' from '/usr/share/aclocal/ltsugar.m4' aclocal: installing 'm4/ltversion.m4' from '/usr/share/aclocal/ltversion.m4' aclocal: installing 'm4/lt~obsolete.m4' from '/usr/share/aclocal/lt~obsolete.m4' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:11: installing './config.guess' configure.ac:11: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' configure.ac: installing './ylwrap' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libpll-0.3.2' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking for bison... bison -y checking for exp in -lm... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking x86intrin.h usability... yes checking x86intrin.h presence... yes checking for x86intrin.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working alloca.h... yes checking for alloca... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for asprintf... yes checking for memcpy... yes checking for memset... yes checking for posix_memalign... yes checking for ps2pdf... no configure: WARNING: *** ps2pdf is required to build a PDF version of the manual checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode libpll 0.3.2 Target: linux-gnu i686 Compiler: gcc CFLAGS: -g -Wdate-time -D_FORTIFY_SOURCE=2 LIBS: -lm -Wl,-z,relro -Wl,-z,now Continue with 'make' command make[1]: Leaving directory '/build/libpll-0.3.2' dh_auto_build make -j10 make[1]: Entering directory '/build/libpll-0.3.2' make all-recursive make[2]: Entering directory '/build/libpll-0.3.2' Making all in src make[3]: Entering directory '/build/libpll-0.3.2/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-rtree.lo `test -f 'rtree.c' || echo './'`rtree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -fPIC -DPIC -o .libs/libpll_la-pll.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -fPIC -DPIC -o .libs/libpll_la-output.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -fPIC -DPIC -o .libs/libpll_la-maps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -fPIC -DPIC -o .libs/libpll_la-likelihood.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -fPIC -DPIC -o .libs/libpll_la-models.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -fPIC -DPIC -o .libs/libpll_la-utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -fPIC -DPIC -o .libs/libpll_la-rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c output.c -o libpll_la-output.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -o libpll_la-list.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -o libpll_la-maps.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -o libpll_la-fasta.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -o libpll_la-models.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -o libpll_la-gamma.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -o libpll_la-likelihood.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c rtree.c -o libpll_la-rtree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c pll.c -o libpll_la-pll.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree.c -o libpll_la-utree.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-derivatives.lo `test -f 'derivatives.c' || echo './'`derivatives.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-partials.lo `test -f 'partials.c' || echo './'`partials.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-compress.lo `test -f 'compress.c' || echo './'`compress.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_moves.lo `test -f 'utree_moves.c' || echo './'`utree_moves.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree_svg.lo `test -f 'utree_svg.c' || echo './'`utree_svg.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parsimony.lo `test -f 'parsimony.c' || echo './'`parsimony.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -fPIC -DPIC -o .libs/libpll_la-derivatives.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -fPIC -DPIC -o .libs/libpll_la-partials.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -fPIC -DPIC -o .libs/libpll_la-utree_moves.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -fPIC -DPIC -o .libs/libpll_la-parsimony.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c -fPIC -DPIC -o .libs/libpll_la-utree_svg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -fPIC -DPIC -o .libs/libpll_la-compress.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_derivatives.lo `test -f 'core_derivatives.c' || echo './'`core_derivatives.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -fPIC -DPIC -o .libs/libpll_la-core_derivatives.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_partials.lo `test -f 'core_partials.c' || echo './'`core_partials.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_pmatrix.lo `test -f 'core_pmatrix.c' || echo './'`core_pmatrix.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-core_likelihood.lo `test -f 'core_likelihood.c' || echo './'`core_likelihood.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -fPIC -DPIC -o .libs/libpll_la-core_partials.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -fPIC -DPIC -o .libs/libpll_la-core_pmatrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -fPIC -DPIC -o .libs/libpll_la-core_likelihood.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c compress.c -o libpll_la-compress.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c derivatives.c -o libpll_la-derivatives.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parsimony.c -o libpll_la-parsimony.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c partials.c -o libpll_la-partials.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_pmatrix.c -o libpll_la-core_pmatrix.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_svg.c -o libpll_la-utree_svg.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c utree_moves.c -o libpll_la-utree_moves.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_derivatives.c -o libpll_la-core_derivatives.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_likelihood.c -o libpll_la-core_likelihood.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c core_partials.c -o libpll_la-core_partials.o >/dev/null 2>&1 /bin/sh ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` /bin/sh ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` /bin/sh ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_utree"` -o lex.yy.c /bin/sh ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -P `/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"lex_rtree"` -o lex.yy.c /build/libpll-0.3.2/src/parse_rtree.y:102.1/build/libpll-0.3.2/src/parse_utree.y-14: :159warning: .1POSIX Yacc does not support %error-verbose-14 [-Wyacc]: warning: POSIX Yacc does not support %error-verbose [-Wyacc] %error-ve rb%oesrer or- v^e~r~~b~o~s~e~ ~~ ~^~~~~~ ~~~~~~~~~~~ /build/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: /build/libpll-0.3.2/src/parse_utree.ydeprecated directive, use '%define parse.error verbose':159 [-Wdeprecated].1 -14: warning: deprecated directive, use '%define parse.error verbose' [-Wdeprecated] % e%rerrorro-rv-evrebrobsoes e ^ ~^~~~~~~~~~~~~~~~~~~~~~~~~ ~ /build/libpll-0.3.2/src/parse_utree.y:161.1-11: warning: /build/libpll-0.3.2/src/parse_rtree.yPOSIX Yacc does not support %destructor:104 [-Wyacc] .1-11 : %warning: dPOSIX Yacc does not support %destructores [-Wyacc]t ru c%tdoers t{r upcltlo_ru t{r epel_lg_rratprhe_ede_sgtrraopy(h$_$d,eNsUtrLoLy)(;$ $}, NsUuLbLt)r;e e} s u^b~t~r~e~e~ ~~ ~^~~~~ ~~~~~~~~ /build/libpll-0.3.2/src/parse_utree.y:162.1-11: /build/libpll-0.3.2/src/parse_rtree.ywarning: :105POSIX Yacc does not support %destructor.1 [-Wyacc]-11 : warning: %dPOSIX Yacc does not support %destructores [-Wyacc]t ru c%tdoers t{r ufcrteore ({$ $fr)e;e (}$ $S)T;R IN}G ST R^I~N~G~ ~~ ~^~~~~~~~~ ~~~~~~ /build/libpll-0.3.2/src/parse_utree.y:163.1/build/libpll-0.3.2/src/parse_rtree.y-11: :106warning: .1POSIX Yacc does not support %destructor-11 [-Wyacc]: warning: POSIX Yacc does not support %destructor%d [-Wyacc]e st r%udcetsotrr u{c tforre e{( $f$r)e;e (}$ $N)U;M B}E RNU MB E^R ~ ~^~~~~~~~~~~~~~~~~ ~~ /build/libpll-0.3.2/src/parse_utree.y/build/libpll-0.3.2/src/parse_rtree.y:164:107.1.1-11-11: : warning: warning: POSIX Yacc does not support %destructorPOSIX Yacc does not support %destructor [-Wyacc] [-Wyacc] %%ddeessttrruuccttoorr {{ ffrreeee(($$$$));; }} llaabbeell ^^~~~~~~~~~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fast_parsimony.lo `test -f 'fast_parsimony.c' || echo './'`fast_parsimony.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-stepwise.lo `test -f 'stepwise.c' || echo './'`stepwise.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-random.lo `test -f 'random.c' || echo './'`random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fast_parsimony.c -fPIC -DPIC -o .libs/libpll_la-fast_parsimony.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c random.c -fPIC -DPIC -o .libs/libpll_la-random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c stepwise.c -fPIC -DPIC -o .libs/libpll_la-stepwise.o /build/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] /build/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. 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libsimd_sse_la-core_partials_sse.lo `test -f 'core_partials_sse.c' || echo './'`core_partials_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -c core_likelihood_avx2.c -o libsimd_avx2_la-core_likelihood_avx2.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c -fPIC -DPIC -o .libs/libsimd_avx_la-core_partials_avx.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c -fPIC -DPIC -o .libs/libsimd_avx_la-core_derivatives_avx.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-core_partials_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -fPIC -DPIC -o .libs/libsimd_avx_la-fast_parsimony_avx.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -fPIC -DPIC -o .libs/libsimd_avx_la-core_likelihood_avx.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -fPIC -DPIC -o .libs/libsimd_avx_la-core_pmatrix_avx.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_derivatives_sse.lo `test -f 'core_derivatives_sse.c' || echo './'`core_derivatives_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-core_derivatives_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_likelihood_sse.lo `test -f 'core_likelihood_sse.c' || echo './'`core_likelihood_sse.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-core_pmatrix_sse.lo `test -f 'core_pmatrix_sse.c' || echo './'`core_pmatrix_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_pmatrix_avx.c -o libsimd_avx_la-core_pmatrix_avx.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-core_likelihood_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-core_pmatrix_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-fast_parsimony_sse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -o libsimd_sse_la-core_partials_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_partials_avx.c -o libsimd_avx_la-core_partials_avx.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c -o libsimd_avx_la-core_derivatives_avx.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -o libsimd_sse_la-fast_parsimony_sse.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_utree.lo `test -f 'parse_utree.c' || echo './'`parse_utree.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-parse_rtree.lo `test -f 'parse_rtree.c' || echo './'`parse_rtree.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -fPIC -DPIC -o .libs/libpll_la-parse_rtree.o /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -fPIC -DPIC -o .libs/libpll_la-lex_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -fPIC -DPIC -o .libs/libpll_la-parse_utree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -o libsimd_sse_la-core_likelihood_sse.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo -lm /bin/sh ../libtool --tag=CC --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo -lm libtool: link: ar cru .libs/libsimd_avx2.a .libs/libsimd_avx2_la-core_partials_avx2.o .libs/libsimd_avx2_la-core_derivatives_avx2.o .libs/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libsimd_avx2_la-core_likelihood_avx2.o .libs/libsimd_avx2_la-fast_parsimony_avx2.o libtool: link: ar cru .libs/libsimd_avx.a .libs/libsimd_avx_la-core_partials_avx.o .libs/libsimd_avx_la-core_derivatives_avx.o .libs/libsimd_avx_la-core_pmatrix_avx.o .libs/libsimd_avx_la-core_likelihood_avx.o .libs/libsimd_avx_la-fast_parsimony_avx.o ar: ar: `u' modifier ignored since `D' is the default (see `U') `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsimd_avx2.a libtool: link: ranlib .libs/libsimd_avx.a libtool: link: ( cd ".libs" && rm -f "libsimd_avx2.la" && ln -s "../libsimd_avx2.la" "libsimd_avx2.la" ) libtool: link: ( cd ".libs" && rm -f "libsimd_avx.la" && ln -s "../libsimd_avx.la" "libsimd_avx.la" ) /bin/sh ../libtool --tag=CC --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo -lm libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_utree.c -o libpll_la-parse_utree.o >/dev/null 2>&1 libtool: link: ar cru .libs/libsimd_sse.a .libs/libsimd_sse_la-core_partials_sse.o .libs/libsimd_sse_la-core_derivatives_sse.o .libs/libsimd_sse_la-core_likelihood_sse.o .libs/libsimd_sse_la-core_pmatrix_sse.o .libs/libsimd_sse_la-fast_parsimony_sse.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsimd_sse.a libtool: link: ( cd ".libs" && rm -f "libsimd_sse.la" && ln -s "../libsimd_sse.la" "libsimd_sse.la" ) libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c parse_rtree.c -o libpll_la-parse_rtree.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=link gcc -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/i386-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o -Wl,--whole-archive ./.libs/libsimd_avx2.a ./.libs/libsimd_avx.a ./.libs/libsimd_sse.a -Wl,--no-whole-archive -lm -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0") libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so") libtool: link: (cd .libs/libpll.lax/libsimd_avx2.a && ar x "/build/libpll-0.3.2/src/./.libs/libsimd_avx2.a") libtool: link: (cd .libs/libpll.lax/libsimd_avx.a && ar x "/build/libpll-0.3.2/src/./.libs/libsimd_avx.a") libtool: link: (cd .libs/libpll.lax/libsimd_sse.a && ar x "/build/libpll-0.3.2/src/./.libs/libsimd_sse.a") libtool: link: ar cru .libs/libpll.a libpll_la-fasta.o libpll_la-gamma.o libpll_la-likelihood.o libpll_la-list.o libpll_la-maps.o libpll_la-models.o libpll_la-pll.o libpll_la-output.o libpll_la-utree.o libpll_la-rtree.o libpll_la-derivatives.o libpll_la-partials.o libpll_la-compress.o libpll_la-utree_moves.o libpll_la-utree_svg.o libpll_la-parsimony.o libpll_la-core_derivatives.o libpll_la-core_partials.o libpll_la-core_pmatrix.o libpll_la-core_likelihood.o libpll_la-parse_utree.o libpll_la-parse_rtree.o libpll_la-lex_utree.o libpll_la-lex_rtree.o libpll_la-fast_parsimony.o libpll_la-stepwise.o libpll_la-random.o libpll_la-phylip.o libpll_la-hardware.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_derivatives_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_likelihood_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_partials_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libpll.lax/libsimd_avx2.a/libsimd_avx2_la-fast_parsimony_avx2.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_derivatives_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_likelihood_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_partials_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-core_pmatrix_avx.o .libs/libpll.lax/libsimd_avx.a/libsimd_avx_la-fast_parsimony_avx.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_derivatives_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_likelihood_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_partials_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-core_pmatrix_sse.o .libs/libpll.lax/libsimd_sse.a/libsimd_sse_la-fast_parsimony_sse.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libpll.a libtool: link: rm -fr .libs/libpll.lax libtool: link: ( cd ".libs" && rm -f "libpll.la" && ln -s "../libpll.la" "libpll.la" ) make[3]: Leaving directory '/build/libpll-0.3.2/src' Making all in man make[3]: Entering directory '/build/libpll-0.3.2/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libpll-0.3.2/man' Making all in examples make[3]: Entering directory '/build/libpll-0.3.2/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libpll-0.3.2/examples' make[3]: Entering directory '/build/libpll-0.3.2' make[3]: Leaving directory '/build/libpll-0.3.2' make[2]: Leaving directory '/build/libpll-0.3.2' make[1]: Leaving directory '/build/libpll-0.3.2' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/libpll-0.3.2' Making check in src make[2]: Entering directory '/build/libpll-0.3.2/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/libpll-0.3.2/src' Making check in man make[2]: Entering directory '/build/libpll-0.3.2/man' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/libpll-0.3.2/man' Making check in examples make[2]: Entering directory '/build/libpll-0.3.2/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/libpll-0.3.2/examples' make[2]: Entering directory '/build/libpll-0.3.2' make[2]: Leaving directory '/build/libpll-0.3.2' make[1]: Leaving directory '/build/libpll-0.3.2' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libpll-0.3.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libpll-0.3.2' Making install in src make[2]: Entering directory '/build/libpll-0.3.2/src' make[3]: Entering directory '/build/libpll-0.3.2/src' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c libpll.la '/build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.so.0.0.0 libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; }) libtool: install: (cd /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; }) libtool: install: /usr/bin/install -c .libs/libpll.lai /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.la libtool: install: /usr/bin/install -c .libs/libpll.a /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.a libtool: install: chmod 644 /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.a libtool: install: ranlib /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/include/libpll' /usr/bin/install -c -m 644 pll.h '/build/libpll-0.3.2/debian/tmp/usr/include/libpll' make[3]: Leaving directory '/build/libpll-0.3.2/src' make[2]: Leaving directory '/build/libpll-0.3.2/src' Making install in man make[2]: Entering directory '/build/libpll-0.3.2/man' make[3]: Entering directory '/build/libpll-0.3.2/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 libpll.3 '/build/libpll-0.3.2/debian/tmp/usr/share/man/man3' make[3]: Leaving directory '/build/libpll-0.3.2/man' make[2]: Leaving directory '/build/libpll-0.3.2/man' Making install in examples make[2]: Entering directory '/build/libpll-0.3.2/examples' make[3]: Entering directory '/build/libpll-0.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /usr/bin/install -c -m 644 heterotachy/heterotachy.c heterotachy/Makefile heterotachy/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/heterotachy' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /usr/bin/install -c -m 644 lg4/lg4.c lg4/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /usr/bin/install -c -m 644 lg4/data/example.fas lg4/data/example.tree '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/lg4/data' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /usr/bin/install -c -m 644 load-utree/load-utree.c load-utree/Makefile load-utree/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/load-utree' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /usr/bin/install -c -m 644 newick-fasta-rooted/newick-fasta-rooted.c newick-fasta-rooted/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-rooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /usr/bin/install -c -m 644 newick-fasta-unrooted/newick-fasta-unrooted.c newick-fasta-unrooted/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-fasta-unrooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /usr/bin/install -c -m 644 newick-phylip-unrooted/newick-phylip-unrooted.c newick-phylip-unrooted/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newick-phylip-unrooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /usr/bin/install -c -m 644 newton/newton.c newton/Makefile newton/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/newton' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /usr/bin/install -c -m 644 parsimony/npr-pars.c parsimony/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/parsimony' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /usr/bin/install -c -m 644 partial-traversal/partial.c partial-traversal/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/partial-traversal' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /usr/bin/install -c -m 644 protein-list/protein-list.c protein-list/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/protein-list' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /usr/bin/install -c -m 644 rooted/rooted.c rooted/Makefile rooted/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /usr/bin/install -c -m 644 rooted-tacg/rooted-tacg.c rooted-tacg/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/rooted-tacg' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /usr/bin/install -c -m 644 stepwise/stepwise.c stepwise/Makefile '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/stepwise' /bin/mkdir -p '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' /usr/bin/install -c -m 644 unrooted/unrooted.c unrooted/Makefile unrooted/README.md '/build/libpll-0.3.2/debian/tmp/usr/share/doc/libpll/examples/unrooted' make[3]: Leaving directory '/build/libpll-0.3.2/examples' make[2]: Leaving directory '/build/libpll-0.3.2/examples' make[2]: Entering directory '/build/libpll-0.3.2' make[3]: Entering directory '/build/libpll-0.3.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/libpll-0.3.2' make[2]: Leaving directory '/build/libpll-0.3.2' make[1]: Leaving directory '/build/libpll-0.3.2' debian/rules override_dh_install make[1]: Entering directory '/build/libpll-0.3.2' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/ld64-1-dev// \ --override s/ld-kfreebsd-x86-64-1-dev// \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libpll-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libpll0/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libpll.a debian/libpll-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libpll.so debian/libpll-dev/usr/lib/i386-linux-gnu mv /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.so.0 debian/libpll0/usr/lib/i386-linux-gnu mv /build/libpll-0.3.2/debian/tmp/usr/lib/i386-linux-gnu/libpll.so.0.0.0 debian/libpll0/usr/lib/i386-linux-gnu PKGDEV=libpll-dev PKGSHL=libpll0 install -d -m 755 debian/libpll-dev/usr/include mv debian/tmp/usr/include/libpll debian/libpll-dev/usr/include make[1]: Leaving directory '/build/libpll-0.3.2' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libpll-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libpll-dev' in '../libpll-dev_0.3.2-2_i386.deb'. dpkg-deb: building package 'libpll0' in '../libpll0_0.3.2-2_i386.deb'. dpkg-deb: building package 'libpll0-dbgsym' in '../libpll0-dbgsym_0.3.2-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libpll_0.3.2-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/20006/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/20006/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20006 and its subdirectories I: Current time: Sun Apr 12 19:40:17 +14 2020 I: pbuilder-time-stamp: 1586670017