I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 31 22:05:52 -12 2021 I: pbuilder-time-stamp: 1630490752 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libbioparser-dev_1.2.1-1.dsc] I: copying [./libbioparser-dev_1.2.1.orig.tar.gz] I: copying [./libbioparser-dev_1.2.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 24 04:33:03 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbioparser-dev_1.2.1-1.dsc dpkg-source: info: extracting libbioparser-dev in libbioparser-dev-1.2.1 dpkg-source: info: unpacking libbioparser-dev_1.2.1.orig.tar.gz dpkg-source: info: unpacking libbioparser-dev_1.2.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2438/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='b42700cc737a44ef81e5fba61d89e3d9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2438' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.yUG3eLsjKi/pbuilderrc_SKc9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.yUG3eLsjKi/b1 --logfile b1/build.log libbioparser-dev_1.2.1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-8-686-pae #1 SMP Debian 5.10.46-4 (2021-08-03) i686 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:26 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2438/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), cmake, zlib1g-dev, libgtest-dev (>> 1.8.0-10~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev (>> 1.8.0-10~); however: Package libgtest-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbsd0{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 30.6 MB of archives. After unpacking 119 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2+deb10u1 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3+deb10u1 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libprocps7 i386 2:3.3.15-2 [62.7 kB] Get: 9 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 procps i386 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u2 [242 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u2 [124 kB] Get: 14 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u2 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 17 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 18 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main i386 cmake-data all 3.13.4-1 [1476 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+deb10u2 [723 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libarchive13 i386 3.3.3-4+deb10u1 [351 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3+deb10u1 [68.7 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3+deb10u1 [126 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u6 [1538 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3+deb10u1 [395 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3+deb10u1 [168 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u6 [236 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 38 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4+deb10u2 [359 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libjsoncpp1 i386 1.7.4-3 [85.0 kB] Get: 43 http://deb.debian.org/debian buster/main i386 librhash0 i386 1.3.8-1 [135 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libuv1 i386 1.24.1-1 [116 kB] Get: 45 http://deb.debian.org/debian buster/main i386 cmake i386 3.13.4-1 [3747 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 47 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 50 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 52 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u3 [1334 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 55 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 56 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main i386 googletest i386 1.8.1-3 [903 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libgtest-dev i386 1.8.1-3 [231 kB] Get: 61 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Fetched 30.6 MB in 1s (44.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_i386.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../06-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:i386. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_i386.deb ... Unpacking libprocps7:i386 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../09-procps_2%3a3.3.15-2_i386.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../10-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../11-libmagic-mgc_1%3a5.35-4+deb10u2_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../12-libmagic1_1%3a5.35-4+deb10u2_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../13-file_1%3a5.35-4+deb10u2_i386.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../14-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../15-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../21-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../22-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../23-libxml2_2.9.4+dfsg1-7+deb10u2_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../24-libarchive13_3.3.3-4+deb10u1_i386.deb ... Unpacking libarchive13:i386 (3.3.3-4+deb10u1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../25-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../26-libkrb5support0_1.17-3+deb10u1_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3+deb10u1) ... Selecting previously unselected package libk5crypto3:i386. 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Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbioparser-dev-1.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbioparser-dev_1.2.1-1_source.changes dpkg-buildpackage: info: source package libbioparser-dev dpkg-buildpackage: info: source version 1.2.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libbioparser-dev-1.2.1' dh_auto_configure -- -Dbioparser_build_tests=ON cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dbioparser_build_tests=ON .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu make[1]: Leaving directory '/build/libbioparser-dev-1.2.1' dh_auto_build cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/libbioparser-dev-1.2.1 -B/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu/CMakeFiles /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/depend make[3]: Entering directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' cd /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbioparser-dev-1.2.1 /build/libbioparser-dev-1.2.1 /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu/CMakeFiles/bioparser_test.dir/DependInfo.cmake --color= Scanning dependencies of target bioparser_test make[3]: Leaving directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' make -f CMakeFiles/bioparser_test.dir/build.make CMakeFiles/bioparser_test.dir/build make[3]: Entering directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' [ 50%] Building CXX object CMakeFiles/bioparser_test.dir/test/bioparser_test.cpp.o /usr/bin/c++ -I/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu/config -I/build/libbioparser-dev-1.2.1/include -g -O2 -ffile-prefix-map=/build/libbioparser-dev-1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=gnu++11 -o CMakeFiles/bioparser_test.dir/test/bioparser_test.cpp.o -c /build/libbioparser-dev-1.2.1/test/bioparser_test.cpp [100%] Linking CXX executable bin/bioparser_test /usr/bin/cmake -E cmake_link_script CMakeFiles/bioparser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/libbioparser-dev-1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -rdynamic CMakeFiles/bioparser_test.dir/test/bioparser_test.cpp.o -o bin/bioparser_test -lgtest_main -lgtest -lz -lpthread make[3]: Leaving directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' [100%] Built target bioparser_test make[2]: Leaving directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbioparser-dev-1.2.1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/libbioparser-dev-1.2.1/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbioparser-dev-1.2.1' set -e -x; for f in obj-*/bin/*_test; do [ ! -x $f ] || $f; done + [ ! -x obj-i686-linux-gnu/bin/bioparser_test ] + obj-i686-linux-gnu/bin/bioparser_test Running main() from /build/googletest-e7KYpA/googletest-1.8.1/googletest/src/gtest_main.cc [==========] Running 37 tests from 6 test cases. [----------] Global test environment set-up. [----------] 1 test from BioparserTest [ RUN ] BioparserTest.CreateParserError [ OK ] BioparserTest.CreateParserError (13 ms) [----------] 1 test from BioparserTest (14 ms total) [----------] 10 tests from BioparserFastaTest [ RUN ] BioparserFastaTest.ParseWhole [ OK ] BioparserFastaTest.ParseWhole (20 ms) [ RUN ] BioparserFastaTest.CompressedParseWhole [ OK ] BioparserFastaTest.CompressedParseWhole (45 ms) [ RUN ] BioparserFastaTest.ParseInChunks [ OK ] BioparserFastaTest.ParseInChunks (12 ms) [ RUN ] BioparserFastaTest.CompressedParseInChunks [ OK ] BioparserFastaTest.CompressedParseInChunks (23 ms) [ RUN ] BioparserFastaTest.FormatError [ OK ] BioparserFastaTest.FormatError (18 ms) [ RUN ] BioparserFastaTest.CompressedFormatError [ OK ] BioparserFastaTest.CompressedFormatError (29 ms) [ RUN ] BioparserFastaTest.ChunkSizeError [ OK ] BioparserFastaTest.ChunkSizeError (14 ms) [ RUN ] BioparserFastaTest.CompressedChunkSizeError [ OK ] BioparserFastaTest.CompressedChunkSizeError (12 ms) [ RUN ] BioparserFastaTest.ParseAndReset [ OK ] BioparserFastaTest.ParseAndReset (10 ms) [ RUN ] BioparserFastaTest.CompressedParseAndReset [ OK ] BioparserFastaTest.CompressedParseAndReset (14 ms) [----------] 10 tests from BioparserFastaTest (199 ms total) [----------] 8 tests from BioparserFastqTest [ RUN ] BioparserFastqTest.ParseWhole [ OK ] BioparserFastqTest.ParseWhole (21 ms) [ RUN ] BioparserFastqTest.CompressedParseWhole [ OK ] BioparserFastqTest.CompressedParseWhole (21 ms) [ RUN ] BioparserFastqTest.ParseInChunks [ OK ] BioparserFastqTest.ParseInChunks (18 ms) [ RUN ] BioparserFastqTest.CompressedParseInChunks [ OK ] BioparserFastqTest.CompressedParseInChunks (26 ms) [ RUN ] BioparserFastqTest.FormatError [ OK ] BioparserFastqTest.FormatError (30 ms) [ RUN ] BioparserFastqTest.CompressedFormatError [ OK ] BioparserFastqTest.CompressedFormatError (36 ms) [ RUN ] BioparserFastqTest.ChunkSizeError [ OK ] BioparserFastqTest.ChunkSizeError (44 ms) [ RUN ] BioparserFastqTest.CompressedChunkSizeError [ OK ] BioparserFastqTest.CompressedChunkSizeError (44 ms) [----------] 8 tests from BioparserFastqTest (241 ms total) [----------] 6 tests from BioparserMhapTest [ RUN ] BioparserMhapTest.ParseWhole ./test/bioparser_test.cpp:506: Failure Expected equality of these values: 7822873U Which is: 7822873 total_value Which is: 7822813 [ FAILED ] BioparserMhapTest.ParseWhole (4 ms) [ RUN ] BioparserMhapTest.CompressedParseWhole ./test/bioparser_test.cpp:521: Failure Expected equality of these values: 7822873U Which is: 7822873 total_value Which is: 7822813 [ FAILED ] BioparserMhapTest.CompressedParseWhole (4 ms) [ RUN ] BioparserMhapTest.ParseInChunks ./test/bioparser_test.cpp:538: Failure Expected equality of these values: 7822873U Which is: 7822873 total_value Which is: 7822813 [ FAILED ] BioparserMhapTest.ParseInChunks (0 ms) [ RUN ] BioparserMhapTest.CompressedParseInChunks ./test/bioparser_test.cpp:555: Failure Expected equality of these values: 7822873U Which is: 7822873 total_value Which is: 7822813 [ FAILED ] BioparserMhapTest.CompressedParseInChunks (0 ms) [ RUN ] BioparserMhapTest.FormatError [ OK ] BioparserMhapTest.FormatError (24 ms) [ RUN ] BioparserMhapTest.CompressedFormatError [ OK ] BioparserMhapTest.CompressedFormatError (11 ms) [----------] 6 tests from BioparserMhapTest (44 ms total) [----------] 6 tests from BioparserPafTest [ RUN ] BioparserPafTest.ParseWhole [ OK ] BioparserPafTest.ParseWhole (2 ms) [ RUN ] BioparserPafTest.CompressedParseWhole [ OK ] BioparserPafTest.CompressedParseWhole (3 ms) [ RUN ] BioparserPafTest.ParseInChunks [ OK ] BioparserPafTest.ParseInChunks (2 ms) [ RUN ] BioparserPafTest.CompressedParseInChunks [ OK ] BioparserPafTest.CompressedParseInChunks (4 ms) [ RUN ] BioparserPafTest.FormatError [ OK ] BioparserPafTest.FormatError (16 ms) [ RUN ] BioparserPafTest.CompressedFormatError [ OK ] BioparserPafTest.CompressedFormatError (16 ms) [----------] 6 tests from BioparserPafTest (52 ms total) [----------] 6 tests from BioparserSamTest [ RUN ] BioparserSamTest.ParseWhole [ OK ] BioparserSamTest.ParseWhole (52 ms) [ RUN ] BioparserSamTest.CompressedParseWhole [ OK ] BioparserSamTest.CompressedParseWhole (63 ms) [ RUN ] BioparserSamTest.ParseInChunks [ OK ] BioparserSamTest.ParseInChunks (39 ms) [ RUN ] BioparserSamTest.CompressedParseInChunks [ OK ] BioparserSamTest.CompressedParseInChunks (183 ms) [ RUN ] BioparserSamTest.FormatError [ OK ] BioparserSamTest.FormatError (47 ms) [ RUN ] BioparserSamTest.CompressedFormatError [ OK ] BioparserSamTest.CompressedFormatError (52 ms) [----------] 6 tests from BioparserSamTest (436 ms total) [----------] Global test environment tear-down [==========] 37 tests from 6 test cases ran. (986 ms total) [ PASSED ] 33 tests. [ FAILED ] 4 tests, listed below: [ FAILED ] BioparserMhapTest.ParseWhole [ FAILED ] BioparserMhapTest.CompressedParseWhole [ FAILED ] BioparserMhapTest.ParseInChunks [ FAILED ] BioparserMhapTest.CompressedParseInChunks 4 FAILED TESTS make[1]: *** [debian/rules:15: override_dh_auto_test] Error 1 make[1]: Leaving directory '/build/libbioparser-dev-1.2.1' make: *** [debian/rules:8: build] Error 2 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2438 and its subdirectories