I: pbuilder: network access will be disabled during build
I: Current time: Wed Apr 21 14:05:06 +14 2021
I: pbuilder-time-stamp: 1618963506
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [htsjdk_2.18.2+dfsg-2.dsc]
I: copying [./htsjdk_2.18.2+dfsg.orig.tar.xz]
I: copying [./htsjdk_2.18.2+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Mar  2 12:06:01 2019 +14
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./htsjdk_2.18.2+dfsg-2.dsc
dpkg-source: info: extracting htsjdk in htsjdk-2.18.2+dfsg
dpkg-source: info: unpacking htsjdk_2.18.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking htsjdk_2.18.2+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10-build.xml.patch
dpkg-source: info: applying 13-skip_network_tests
dpkg-source: info: applying 20-fix-version.patch
dpkg-source: info: applying 30-disable-scalatest.patch
dpkg-source: info: applying 40-fix-java9
dpkg-source: info: applying 50-fix-javadoc
dpkg-source: info: applying 60-enable-tests
dpkg-source: info: applying 70-removesometests-testng.patch
dpkg-source: info: applying 80-2to3.patch
dpkg-source: info: applying 90-disable-testftp.patch
dpkg-source: info: applying 92-disable-testhttp.patch
dpkg-source: info: applying 100-fix-java11
dpkg-source: info: applying 110-debian-lib-version.patch
dpkg-source: info: applying disable-network-tests.diff
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/35623/tmp/hooks/D01_modify_environment starting
disorder-fs debug: Running on profitbricks-build16-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/35623/tmp/hooks/D01_modify_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: default-jdk (>= 2:1.9), javahelper, gradle-debian-helper, maven-repo-helper, debhelper (>= 12~), libcommons-jexl2-java, libcommons-logging-java, libjaxb-api-java, libjaxb-java, libsnappy-java, libcommons-compress-java, libxz-java (>= 1.5), libngs-java, default-jdk-doc, testng (>= 6.9.9), junit4, libjimfs-java, scala-library
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19231 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on default-jdk (>= 2:1.9); however:
  Package default-jdk is not installed.
 pbuilder-satisfydepends-dummy depends on javahelper; however:
  Package javahelper is not installed.
 pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however:
  Package gradle-debian-helper is not installed.
 pbuilder-satisfydepends-dummy depends on maven-repo-helper; however:
  Package maven-repo-helper is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on libcommons-jexl2-java; however:
  Package libcommons-jexl2-java is not installed.
 pbuilder-satisfydepends-dummy depends on libcommons-logging-java; however:
  Package libcommons-logging-java is not installed.
 pbuilder-satisfydepends-dummy depends on libjaxb-api-java; however:
  Package libjaxb-api-java is not installed.
 pbuilder-satisfydepends-dummy depends on libjaxb-java; however:
  Package libjaxb-java is not installed.
 pbuilder-satisfydepends-dummy depends on libsnappy-java; however:
  Package libsnappy-java is not installed.
 pbuilder-satisfydepends-dummy depends on libcommons-compress-java; however:
  Package libcommons-compress-java is not installed.
 pbuilder-satisfydepends-dummy depends on libxz-java (>= 1.5); however:
  Package libxz-java is not installed.
 pbuilder-satisfydepends-dummy depends on libngs-java; however:
  Package libngs-java is not installed.
 pbuilder-satisfydepends-dummy depends on default-jdk-doc; however:
  Package default-jdk-doc is not installed.
 pbuilder-satisfydepends-dummy depends on testng (>= 6.9.9); however:
  Package testng is not installed.
 pbuilder-satisfydepends-dummy depends on junit4; however:
  Package junit4 is not installed.
 pbuilder-satisfydepends-dummy depends on libjimfs-java; however:
  Package libjimfs-java is not installed.
 pbuilder-satisfydepends-dummy depends on scala-library; however:
  Package scala-library is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  ant{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bnd{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-doc{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} intltool-debian{a} ivy{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} libactivation-java{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libargs4j-java{a} libasm-java{a} libasound2{a} libasound2-data{a} libassuan0{a} libatinject-jsr330-api-java{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbsd0{a} libbsf-java{a} libbsh-java{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libcodemodel-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libdbus-1-3{a} libdd-plist-java{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdtd-parser-java{a} libdynaloader-functions-perl{a} libedit2{a} libel-api-java{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfastinfoset-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgssapi-krb5-2{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libicu63{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libistack-commons-java{a} libjansi-java{a} libjansi-native-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxb-api-java{a} libjaxb-java{a} libjaxen-java{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjformatstring-java{a} libjgit-java{a} libjimfs-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmaven-file-management-java{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec2{a} libnative-platform-java{a} libnative-platform-jni{a} libncurses6{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libngs-java{a} libngs-sdk-dev{a} libngs-sdk2{a} libnpth0{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libplexus-archiver-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16{a} libpolyglot-maven-java{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libqdox-java{a} libreadline7{a} libreflectasm-java{a} librelaxng-datatype-java{a} librhino-java{a} librngom-java{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libservlet3.1-java{a} libsigsegv2{a} libsimple-http-java{a} libsisu-guice-java{a} libsisu-inject-java{a} libsisu-ioc-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libssl1.1{a} libstax-ex-java{a} libstreambuffer-java{a} libstrictures-perl{a} libsub-exporter-progressive-perl{a} libsub-quote-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libtxw2-java{a} libuchardet0{a} liburi-perl{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrender1{a} libxshmfence1{a} libxsom-java{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} lsb-base{a} m4{a} man-db{a} maven-repo-helper{a} mime-support{a} netbase{a} openjdk-11-doc{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} scala-library{a} sensible-utils{a} testng{a} ucf{a} unzip{a} wdiff{a} x11-common{a} 
The following packages are RECOMMENDED but will NOT be installed:
  at curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libcglib-java libclass-xsaccessor-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libxt-dev licensecheck lintian lynx python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg shared-mime-info strace wget xdg-user-dirs 
0 packages upgraded, 328 newly installed, 0 to remove and 0 not upgraded.
Need to get 484 MB of archives. After unpacking 1238 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB]
Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB]
Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB]
Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB]
Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB]
Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB]
Get: 7 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u2 [1538 kB]
Get: 8 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB]
Get: 9 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB]
Get: 10 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB]
Get: 11 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB]
Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB]
Get: 13 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB]
Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB]
Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB]
Get: 16 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB]
Get: 17 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB]
Get: 18 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB]
Get: 19 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB]
Get: 20 http://deb.debian.org/debian buster/main i386 netbase all 5.6 [19.4 kB]
Get: 21 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB]
Get: 22 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB]
Get: 23 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB]
Get: 24 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB]
Get: 25 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB]
Get: 26 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB]
Get: 27 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u2 [853 kB]
Get: 28 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB]
Get: 29 http://deb.debian.org/debian buster/main i386 libnspr4 i386 2:4.20-1 [122 kB]
Get: 30 http://deb.debian.org/debian buster/main i386 libnss3 i386 2:3.42.1-1+deb10u2 [1237 kB]
Get: 31 http://deb.debian.org/debian buster/main i386 ca-certificates-java all 20190405 [15.7 kB]
Get: 32 http://deb.debian.org/debian buster/main i386 java-common all 0.71 [14.4 kB]
Get: 33 http://deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB]
Get: 34 http://deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB]
Get: 35 http://deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.16-1 [226 kB]
Get: 36 http://deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB]
Get: 37 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB]
Get: 38 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB]
Get: 39 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB]
Get: 40 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB]
Get: 41 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB]
Get: 42 http://deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6+deb10u2 [338 kB]
Get: 43 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB]
Get: 44 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB]
Get: 45 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB]
Get: 46 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB]
Get: 47 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB]
Get: 48 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB]
Get: 49 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB]
Get: 50 http://deb.debian.org/debian buster/main i386 libasound2-data all 1.1.8-1 [59.6 kB]
Get: 51 http://deb.debian.org/debian buster/main i386 libasound2 i386 1.1.8-1 [382 kB]
Get: 52 http://deb.debian.org/debian buster/main i386 libpcsclite1 i386 1.8.24-1 [60.0 kB]
Get: 53 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB]
Get: 54 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 55 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB]
Get: 56 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB]
Get: 57 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB]
Get: 58 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB]
Get: 59 http://deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB]
Get: 60 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB]
Get: 61 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB]
Get: 62 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB]
Get: 63 http://deb.debian.org/debian buster/main i386 libxtst6 i386 2:1.2.3-1 [28.3 kB]
Get: 64 http://deb.debian.org/debian buster/main i386 openjdk-11-jre-headless i386 11.0.6+10-1~deb10u1 [36.9 MB]
Get: 65 http://deb.debian.org/debian buster/main i386 default-jre-headless i386 2:1.11-71 [10.9 kB]
Get: 66 http://deb.debian.org/debian buster/main i386 ant all 1.10.5-2 [2082 kB]
Get: 67 http://deb.debian.org/debian buster/main i386 ant-optional all 1.10.5-2 [379 kB]
Get: 68 http://deb.debian.org/debian buster/main i386 libantlr-java all 2.7.7+dfsg-9.2 [459 kB]
Get: 69 http://deb.debian.org/debian buster/main i386 antlr all 2.7.7+dfsg-9.2 [13.9 kB]
Get: 70 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB]
Get: 71 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB]
Get: 72 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB]
Get: 73 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB]
Get: 74 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB]
Get: 75 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB]
Get: 76 http://deb.debian.org/debian buster/main i386 unzip i386 6.0-23+deb10u1 [171 kB]
Get: 77 http://deb.debian.org/debian buster/main i386 java-wrappers all 0.3 [10.9 kB]
Get: 78 http://deb.debian.org/debian buster/main i386 libhamcrest-java all 1.3-9 [388 kB]
Get: 79 http://deb.debian.org/debian buster/main i386 junit4 all 4.12-8 [292 kB]
Get: 80 http://deb.debian.org/debian buster/main i386 libfelix-framework-java all 4.6.1-2 [543 kB]
Get: 81 http://deb.debian.org/debian buster/main i386 libfelix-gogo-runtime-java all 0.16.2-1 [111 kB]
Get: 82 http://deb.debian.org/debian buster/main i386 libosgi-annotation-java all 6.0.0-2 [3698 B]
Get: 83 http://deb.debian.org/debian buster/main i386 libosgi-core-java all 6.0.0-1 [147 kB]
Get: 84 http://deb.debian.org/debian buster/main i386 libfelix-resolver-java all 1.14.0-1 [177 kB]
Get: 85 http://deb.debian.org/debian buster/main i386 libosgi-compendium-java all 6.0.0-1 [244 kB]
Get: 86 http://deb.debian.org/debian buster/main i386 libslf4j-java all 1.7.25-3 [143 kB]
Get: 87 http://deb.debian.org/debian buster/main i386 libxz-java all 1.8-2 [141 kB]
Get: 88 http://deb.debian.org/debian buster/main i386 libyaml-snake-java all 1.23-1 [270 kB]
Get: 89 http://deb.debian.org/debian buster/main i386 bnd all 3.5.0-4 [7604 kB]
Get: 90 http://deb.debian.org/debian buster/main i386 dctrl-tools i386 2.24-3 [105 kB]
Get: 91 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB]
Get: 92 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB]
Get: 93 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB]
Get: 94 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get: 95 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get: 96 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB]
Get: 97 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB]
Get: 98 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB]
Get: 99 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB]
Get: 100 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB]
Get: 101 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB]
Get: 102 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB]
Get: 103 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB]
Get: 104 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 105 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB]
Get: 106 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB]
Get: 107 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB]
Get: 108 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB]
Get: 109 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB]
Get: 110 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB]
Get: 111 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1 [190 kB]
Get: 112 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB]
Get: 113 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB]
Get: 114 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB]
Get: 115 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB]
Get: 116 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB]
Get: 117 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB]
Get: 118 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB]
Get: 119 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B]
Get: 120 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB]
Get: 121 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB]
Get: 122 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB]
Get: 123 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB]
Get: 124 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB]
Get: 125 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB]
Get: 126 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB]
Get: 127 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8 [13.0 MB]
Get: 128 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB]
Get: 129 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB]
Get: 130 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB]
Get: 131 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB]
Get: 132 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB]
Get: 133 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB]
Get: 134 http://deb.debian.org/debian buster/main i386 libgif7 i386 5.1.4-3 [44.4 kB]
Get: 135 http://deb.debian.org/debian buster/main i386 openjdk-11-jre i386 11.0.6+10-1~deb10u1 [34.8 kB]
Get: 136 http://deb.debian.org/debian buster/main i386 default-jre i386 2:1.11-71 [1044 B]
Get: 137 http://deb.debian.org/debian buster/main i386 openjdk-11-jdk-headless i386 11.0.6+10-1~deb10u1 [280 MB]
Get: 138 http://deb.debian.org/debian buster/main i386 default-jdk-headless i386 2:1.11-71 [1104 B]
Get: 139 http://deb.debian.org/debian buster/main i386 openjdk-11-jdk i386 11.0.6+10-1~deb10u1 [2140 kB]
Get: 140 http://deb.debian.org/debian buster/main i386 default-jdk i386 2:1.11-71 [1056 B]
Get: 141 http://deb.debian.org/debian buster/main i386 openjdk-11-doc all 11.0.6+10-1~deb10u1 [13.5 MB]
Get: 142 http://deb.debian.org/debian buster/main i386 default-jdk-doc i386 2:1.11-71 [10.9 kB]
Get: 143 http://deb.debian.org/debian buster/main i386 libassuan0 i386 2.5.2-1 [51.5 kB]
Get: 144 http://deb.debian.org/debian buster/main i386 gpgconf i386 2.2.12-1+deb10u1 [517 kB]
Get: 145 http://deb.debian.org/debian buster/main i386 libksba8 i386 1.3.5-2 [107 kB]
Get: 146 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB]
Get: 147 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB]
Get: 148 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u1 [89.6 kB]
Get: 149 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u1 [236 kB]
Get: 150 http://deb.debian.org/debian buster/main i386 libnpth0 i386 1.6-1 [18.7 kB]
Get: 151 http://deb.debian.org/debian buster/main i386 dirmngr i386 2.2.12-1+deb10u1 [738 kB]
Get: 152 http://deb.debian.org/debian buster/main i386 gnupg-l10n all 2.2.12-1+deb10u1 [1010 kB]
Get: 153 http://deb.debian.org/debian buster/main i386 gnupg-utils i386 2.2.12-1+deb10u1 [908 kB]
Get: 154 http://deb.debian.org/debian buster/main i386 gpg i386 2.2.12-1+deb10u1 [905 kB]
Get: 155 http://deb.debian.org/debian buster/main i386 pinentry-curses i386 1.1.0-2 [66.3 kB]
Get: 156 http://deb.debian.org/debian buster/main i386 gpg-agent i386 2.2.12-1+deb10u1 [636 kB]
Get: 157 http://deb.debian.org/debian buster/main i386 gpg-wks-client i386 2.2.12-1+deb10u1 [496 kB]
Get: 158 http://deb.debian.org/debian buster/main i386 gpg-wks-server i386 2.2.12-1+deb10u1 [487 kB]
Get: 159 http://deb.debian.org/debian buster/main i386 gpgsm i386 2.2.12-1+deb10u1 [624 kB]
Get: 160 http://deb.debian.org/debian buster/main i386 gnupg all 2.2.12-1+deb10u1 [715 kB]
Get: 161 http://deb.debian.org/debian buster/main i386 libfile-which-perl all 1.23-1 [16.6 kB]
Get: 162 http://deb.debian.org/debian buster/main i386 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get: 163 http://deb.debian.org/debian buster/main i386 libio-pty-perl i386 1:1.08-1.1+b5 [34.4 kB]
Get: 164 http://deb.debian.org/debian buster/main i386 libipc-run-perl all 20180523.0-1 [101 kB]
Get: 165 http://deb.debian.org/debian buster/main i386 libclass-method-modifiers-perl all 2.12-1 [18.6 kB]
Get: 166 http://deb.debian.org/debian buster/main i386 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get: 167 http://deb.debian.org/debian buster/main i386 libdevel-globaldestruction-perl all 0.14-1 [8084 B]
Get: 168 http://deb.debian.org/debian buster/main i386 libb-hooks-op-check-perl i386 0.22-1+b1 [11.5 kB]
Get: 169 http://deb.debian.org/debian buster/main i386 libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get: 170 http://deb.debian.org/debian buster/main i386 libdevel-callchecker-perl i386 0.008-1 [15.7 kB]
Get: 171 http://deb.debian.org/debian buster/main i386 libparams-classify-perl i386 0.015-1+b1 [26.1 kB]
Get: 172 http://deb.debian.org/debian buster/main i386 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get: 173 http://deb.debian.org/debian buster/main i386 libimport-into-perl all 1.002005-1 [11.6 kB]
Get: 174 http://deb.debian.org/debian buster/main i386 librole-tiny-perl all 2.000006-1 [19.4 kB]
Get: 175 http://deb.debian.org/debian buster/main i386 libstrictures-perl all 2.000005-1 [18.3 kB]
Get: 176 http://deb.debian.org/debian buster/main i386 libsub-quote-perl all 2.005001-1 [17.9 kB]
Get: 177 http://deb.debian.org/debian buster/main i386 libmoo-perl all 2.003004-2 [57.4 kB]
Get: 178 http://deb.debian.org/debian buster/main i386 libencode-locale-perl all 1.05-1 [13.7 kB]
Get: 179 http://deb.debian.org/debian buster/main i386 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB]
Get: 180 http://deb.debian.org/debian buster/main i386 libhttp-date-perl all 6.02-1 [10.7 kB]
Get: 181 http://deb.debian.org/debian buster/main i386 libfile-listing-perl all 6.04-1 [10.3 kB]
Get: 182 http://deb.debian.org/debian buster/main i386 libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get: 183 http://deb.debian.org/debian buster/main i386 liburi-perl all 1.76-1 [89.9 kB]
Get: 184 http://deb.debian.org/debian buster/main i386 libhtml-parser-perl i386 3.72-3+b3 [106 kB]
Get: 185 http://deb.debian.org/debian buster/main i386 libhtml-tree-perl all 5.07-2 [213 kB]
Get: 186 http://deb.debian.org/debian buster/main i386 libio-html-perl all 1.001-1 [17.6 kB]
Get: 187 http://deb.debian.org/debian buster/main i386 liblwp-mediatypes-perl all 6.02-1 [22.1 kB]
Get: 188 http://deb.debian.org/debian buster/main i386 libhttp-message-perl all 6.18-1 [77.8 kB]
Get: 189 http://deb.debian.org/debian buster/main i386 libhttp-cookies-perl all 6.04-1 [17.8 kB]
Get: 190 http://deb.debian.org/debian buster/main i386 libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get: 191 http://deb.debian.org/debian buster/main i386 perl-openssl-defaults i386 3 [6782 B]
Get: 192 http://deb.debian.org/debian buster/main i386 libnet-ssleay-perl i386 1.85-2+b1 [314 kB]
Get: 193 http://deb.debian.org/debian buster/main i386 libio-socket-ssl-perl all 2.060-3 [207 kB]
Get: 194 http://deb.debian.org/debian buster/main i386 libnet-http-perl all 6.18-1 [24.5 kB]
Get: 195 http://deb.debian.org/debian buster/main i386 liblwp-protocol-https-perl all 6.07-2 [9242 B]
Get: 196 http://deb.debian.org/debian buster/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get: 197 http://deb.debian.org/debian buster/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get: 198 http://deb.debian.org/debian buster/main i386 libwww-perl all 6.36-2 [188 kB]
Get: 199 http://deb.debian.org/debian buster/main i386 patchutils i386 0.3.4-2 [92.4 kB]
Get: 200 http://deb.debian.org/debian buster/main i386 wdiff i386 1.2.2-2+b1 [123 kB]
Get: 201 http://deb.debian.org/debian buster/main i386 devscripts i386 2.19.5+deb10u1 [1046 kB]
Get: 202 http://deb.debian.org/debian buster/main i386 ivy all 2.4.0-5 [1207 kB]
Get: 203 http://deb.debian.org/debian buster/main i386 libasm-java all 7.0-1 [362 kB]
Get: 204 http://deb.debian.org/debian buster/main i386 libbsf-java all 1:2.4.0-8 [76.3 kB]
Get: 205 http://deb.debian.org/debian buster/main i386 libcommons-cli-java all 1.4-1 [55.2 kB]
Get: 206 http://deb.debian.org/debian buster/main i386 libapache-pom-java all 18-1 [4676 B]
Get: 207 http://deb.debian.org/debian buster/main i386 libcommons-parent-java all 43-1 [10.8 kB]
Get: 208 http://deb.debian.org/debian buster/main i386 libcommons-logging-java all 1.2-2 [62.2 kB]
Get: 209 http://deb.debian.org/debian buster/main i386 libhawtjni-runtime-java all 1.16-1 [29.9 kB]
Get: 210 http://deb.debian.org/debian buster/main i386 libjansi-native-java all 1.8-1 [26.0 kB]
Get: 211 http://deb.debian.org/debian buster/main i386 libjansi-java all 1.17.1-1 [63.8 kB]
Get: 212 http://deb.debian.org/debian buster/main i386 libjline2-java all 2.14.6-3 [151 kB]
Get: 213 http://deb.debian.org/debian buster/main i386 libqdox-java all 1.12.1-3 [172 kB]
Get: 214 http://deb.debian.org/debian buster/main i386 libservlet-api-java all 4.0.1-2 [81.0 kB]
Get: 215 http://deb.debian.org/debian buster/main i386 libjsp-api-java all 2.3.4-2 [53.5 kB]
Get: 216 http://deb.debian.org/debian buster/main i386 libel-api-java all 3.0.0-2 [64.7 kB]
Get: 217 http://deb.debian.org/debian buster/main i386 libwebsocket-api-java all 1.1-1 [39.8 kB]
Get: 218 http://deb.debian.org/debian buster/main i386 libservlet3.1-java all 1:4.0.1-2 [9516 B]
Get: 219 http://deb.debian.org/debian buster/main i386 libxpp3-java all 1.1.4c-3 [292 kB]
Get: 220 http://deb.debian.org/debian buster/main i386 libxstream-java all 1.4.11.1-1 [539 kB]
Get: 221 http://deb.debian.org/debian buster/main i386 groovy all 2.4.16-2 [12.9 MB]
Get: 222 http://deb.debian.org/debian buster/main i386 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B]
Get: 223 http://deb.debian.org/debian buster/main i386 libcommons-collections3-java all 3.2.2-2 [526 kB]
Get: 224 http://deb.debian.org/debian buster/main i386 libcommons-compress-java all 1.18-2 [530 kB]
Get: 225 http://deb.debian.org/debian buster/main i386 libcommons-io-java all 2.6-2 [213 kB]
Get: 226 http://deb.debian.org/debian buster/main i386 libcommons-lang-java all 2.6-8 [273 kB]
Get: 227 http://deb.debian.org/debian buster/main i386 libjsr305-java all 0.1~+svn49-11 [26.9 kB]
Get: 228 http://deb.debian.org/debian buster/main i386 libguava-java all 19.0-1 [2028 kB]
Get: 229 http://deb.debian.org/debian buster/main i386 libcommons-codec-java all 1.11-1 [271 kB]
Get: 230 http://deb.debian.org/debian buster/main i386 libhttpcore-java all 4.4.11-1 [625 kB]
Get: 231 http://deb.debian.org/debian buster/main i386 libhttpclient-java all 4.5.7-1 [721 kB]
Get: 232 http://deb.debian.org/debian buster/main i386 libjarjar-java all 1.4+svn142-10 [192 kB]
Get: 233 http://deb.debian.org/debian buster/main i386 libjcip-annotations-java all 20060626-5 [12.7 kB]
Get: 234 http://deb.debian.org/debian buster/main i386 libjna-jni i386 4.5.2-1 [54.1 kB]
Get: 235 http://deb.debian.org/debian buster/main i386 libjna-java all 4.5.2-1 [195 kB]
Get: 236 http://deb.debian.org/debian buster/main i386 libjzlib-java all 1.1.3-2 [80.0 kB]
Get: 237 http://deb.debian.org/debian buster/main i386 libjsch-java all 0.1.55-1 [298 kB]
Get: 238 http://deb.debian.org/debian buster/main i386 libminlog-java all 1.3.0-1 [7618 B]
Get: 239 http://deb.debian.org/debian buster/main i386 libobjenesis-java all 3.0.1-2 [52.5 kB]
Get: 240 http://deb.debian.org/debian buster/main i386 libreflectasm-java all 1.05-4 [17.6 kB]
Get: 241 http://deb.debian.org/debian buster/main i386 libkryo-java all 2.20-6 [151 kB]
Get: 242 http://deb.debian.org/debian buster/main i386 liblogback-java all 1:1.2.3-5 [762 kB]
Get: 243 http://deb.debian.org/debian buster/main i386 libnative-platform-jni i386 0.14-5 [13.7 kB]
Get: 244 http://deb.debian.org/debian buster/main i386 libnative-platform-java all 0.14-5 [71.0 kB]
Get: 245 http://deb.debian.org/debian buster/main i386 libxml-commons-external-java all 1.4.01-3 [240 kB]
Get: 246 http://deb.debian.org/debian buster/main i386 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB]
Get: 247 http://deb.debian.org/debian buster/main i386 libxerces2-java all 2.12.0-1 [1440 kB]
Get: 248 http://deb.debian.org/debian buster/main i386 libnekohtml-java all 1.9.22-1 [120 kB]
Get: 249 http://deb.debian.org/debian buster/main i386 libxbean-reflect-java all 4.5-8 [133 kB]
Get: 250 http://deb.debian.org/debian buster/main i386 libgradle-core-java all 4.4.1-6 [4242 kB]
Get: 251 http://deb.debian.org/debian buster/main i386 libbcprov-java all 1.60-1 [3258 kB]
Get: 252 http://deb.debian.org/debian buster/main i386 libbcpg-java all 1.60-1 [301 kB]
Get: 253 http://deb.debian.org/debian buster/main i386 libbsh-java all 2.0b4-19 [282 kB]
Get: 254 http://deb.debian.org/debian buster/main i386 libdd-plist-java all 1.20-1 [72.5 kB]
Get: 255 http://deb.debian.org/debian buster/main i386 libjaxen-java all 1.1.6-4 [214 kB]
Get: 256 http://deb.debian.org/debian buster/main i386 libdom4j-java all 2.1.1-2 [310 kB]
Get: 257 http://deb.debian.org/debian buster/main i386 libbcel-java all 6.2-1 [611 kB]
Get: 258 http://deb.debian.org/debian buster/main i386 libjformatstring-java all 0.10~20131207-2 [33.8 kB]
Get: 259 http://deb.debian.org/debian buster/main i386 libfindbugs-java all 3.1.0~preview2-3 [3502 kB]
Get: 260 http://deb.debian.org/debian buster/main i386 libgoogle-gson-java all 2.8.5-3 [225 kB]
Get: 261 http://deb.debian.org/debian buster/main i386 libaopalliance-java all 20070526-6 [9048 B]
Get: 262 http://deb.debian.org/debian buster/main i386 libguice-java all 4.2.1-1 [962 kB]
Get: 263 http://deb.debian.org/debian buster/main i386 libjatl-java all 0.2.3-1 [28.1 kB]
Get: 264 http://deb.debian.org/debian buster/main i386 libjcifs-java all 1.3.19-2 [394 kB]
Get: 265 http://deb.debian.org/debian buster/main i386 libjavaewah-java all 0.7.9-1 [120 kB]
Get: 266 http://deb.debian.org/debian buster/main i386 libjgit-java all 3.7.1-6 [1885 kB]
Get: 267 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get: 268 http://deb.debian.org/debian buster/main i386 libplexus-utils2-java all 3.1.1-1 [249 kB]
Get: 269 http://deb.debian.org/debian buster/main i386 libwagon-provider-api-java all 3.3.1-2 [50.1 kB]
Get: 270 http://deb.debian.org/debian buster/main i386 libmaven-resolver-java all 1.3.1-1 [549 kB]
Get: 271 http://deb.debian.org/debian buster/main i386 libcommons-lang3-java all 3.8-2 [478 kB]
Get: 272 http://deb.debian.org/debian buster/main i386 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB]
Get: 273 http://deb.debian.org/debian buster/main i386 libmaven-parent-java all 31-2 [5100 B]
Get: 274 http://deb.debian.org/debian buster/main i386 libmaven-shared-utils-java all 3.3.0-1 [149 kB]
Get: 275 http://deb.debian.org/debian buster/main i386 libplexus-cipher-java all 1.7-3 [15.0 kB]
Get: 276 http://deb.debian.org/debian buster/main i386 libplexus-classworlds-java all 2.6.0-1 [49.4 kB]
Get: 277 http://deb.debian.org/debian buster/main i386 libplexus-component-annotations-java all 1.7.1-7 [7536 B]
Get: 278 http://deb.debian.org/debian buster/main i386 libplexus-interpolation-java all 1.25-1 [76.8 kB]
Get: 279 http://deb.debian.org/debian buster/main i386 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB]
Get: 280 http://deb.debian.org/debian buster/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B]
Get: 281 http://deb.debian.org/debian buster/main i386 libcdi-api-java all 1.2-2 [54.5 kB]
Get: 282 http://deb.debian.org/debian buster/main i386 libsisu-inject-java all 0.3.3-1 [347 kB]
Get: 283 http://deb.debian.org/debian buster/main i386 libsisu-plexus-java all 0.3.3-3 [182 kB]
Get: 284 http://deb.debian.org/debian buster/main i386 libmaven3-core-java all 3.6.0-1 [1465 kB]
Get: 285 http://deb.debian.org/debian buster/main i386 libplexus-container-default-java all 1.7.1-7 [194 kB]
Get: 286 http://deb.debian.org/debian buster/main i386 libplexus-container-default1.5-java all 1.7.1-7 [4336 B]
Get: 287 http://deb.debian.org/debian buster/main i386 libpolyglot-maven-java all 0.8~tobrien+git20120905-9 [74.7 kB]
Get: 288 http://deb.debian.org/debian buster/main i386 librhino-java all 1.7.7.1-1 [1160 kB]
Get: 289 http://deb.debian.org/debian buster/main i386 libsimple-http-java all 4.1.21-1 [205 kB]
Get: 290 http://deb.debian.org/debian buster/main i386 libwagon-file-java all 3.3.1-2 [10.7 kB]
Get: 291 http://deb.debian.org/debian buster/main i386 libjsoup-java all 1.10.2-2 [350 kB]
Get: 292 http://deb.debian.org/debian buster/main i386 libwagon-http-java all 3.3.1-2 [50.5 kB]
Get: 293 http://deb.debian.org/debian buster/main i386 libjcommander-java all 1.71-3 [72.7 kB]
Get: 294 http://deb.debian.org/debian buster/main i386 testng all 6.9.12-4 [795 kB]
Get: 295 http://deb.debian.org/debian buster/main i386 libgradle-plugins-java all 4.4.1-6 [5162 kB]
Get: 296 http://deb.debian.org/debian buster/main i386 gradle all 4.4.1-6 [400 kB]
Get: 297 http://deb.debian.org/debian buster/main i386 maven-repo-helper all 1.9.3 [142 kB]
Get: 298 http://deb.debian.org/debian buster/main i386 gradle-debian-helper all 2.0.2 [25.2 kB]
Get: 299 http://deb.debian.org/debian buster/main i386 javahelper all 0.72.9 [96.4 kB]
Get: 300 http://deb.debian.org/debian buster/main i386 libactivation-java all 1.2.0-2 [84.7 kB]
Get: 301 http://deb.debian.org/debian buster/main i386 libargs4j-java all 2.33-1 [139 kB]
Get: 302 http://deb.debian.org/debian buster/main i386 libmaven-shared-io-java all 3.0.0-3 [33.3 kB]
Get: 303 http://deb.debian.org/debian buster/main i386 libmaven-file-management-java all 3.0.0-1 [35.1 kB]
Get: 304 http://deb.debian.org/debian buster/main i386 libplexus-io-java all 3.1.1-1 [64.6 kB]
Get: 305 http://deb.debian.org/debian buster/main i386 libsnappy1v5 i386 1.1.7-1 [18.0 kB]
Get: 306 http://deb.debian.org/debian buster/main i386 libsnappy-jni i386 1.1.7.2-1 [7236 B]
Get: 307 http://deb.debian.org/debian buster/main i386 libsnappy-java all 1.1.7.2-1 [73.7 kB]
Get: 308 http://deb.debian.org/debian buster/main i386 libplexus-archiver-java all 3.6.0-2 [171 kB]
Get: 309 http://deb.debian.org/debian buster/main i386 libsisu-guice-java all 4.2.0-1 [785 kB]
Get: 310 http://deb.debian.org/debian buster/main i386 libsisu-ioc-java all 2.3.0-11 [492 kB]
Get: 311 http://deb.debian.org/debian buster/main i386 libistack-commons-java all 3.0.6-3 [144 kB]
Get: 312 http://deb.debian.org/debian buster/main i386 libcodemodel-java all 2.6+jaxb2.3.0.1-8 [163 kB]
Get: 313 http://deb.debian.org/debian buster/main i386 libcommons-jexl2-java all 2.1.1-4 [257 kB]
Get: 314 http://deb.debian.org/debian buster/main i386 libdtd-parser-java all 1.2~svn20110404-1 [62.5 kB]
Get: 315 http://deb.debian.org/debian buster/main i386 libjaxb-api-java all 2.3.1-1 [119 kB]
Get: 316 http://deb.debian.org/debian buster/main i386 libstax-ex-java all 1.7.8-3 [40.9 kB]
Get: 317 http://deb.debian.org/debian buster/main i386 libstreambuffer-java all 1.5.4-1 [71.8 kB]
Get: 318 http://deb.debian.org/debian buster/main i386 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB]
Get: 319 http://deb.debian.org/debian buster/main i386 libxsom-java all 2.3.0.1-8 [396 kB]
Get: 320 http://deb.debian.org/debian buster/main i386 libfastinfoset-java all 1.2.12-3 [343 kB]
Get: 321 http://deb.debian.org/debian buster/main i386 librngom-java all 2.3.0.1-8 [288 kB]
Get: 322 http://deb.debian.org/debian buster/main i386 libtxw2-java all 2.3.0.1-8 [134 kB]
Get: 323 http://deb.debian.org/debian buster/main i386 libjaxb-java all 2.3.0.1-8 [1966 kB]
Get: 324 http://deb.debian.org/debian buster/main i386 libjimfs-java all 1.1-5 [191 kB]
Get: 325 http://deb.debian.org/debian buster/main i386 libngs-sdk2 i386 2.9.3-1 [65.2 kB]
Get: 326 http://deb.debian.org/debian buster/main i386 libngs-sdk-dev i386 2.9.3-1 [122 kB]
Get: 327 http://deb.debian.org/debian buster/main i386 libngs-java i386 2.9.3-1 [79.9 kB]
Get: 328 http://deb.debian.org/debian buster/main i386 scala-library all 2.11.12-4 [9589 kB]
Fetched 484 MB in 8s (63.6 MB/s)
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Setting up ca-certificates-java (20190405) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
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Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:EC-ACC.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:Certigna.pem
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Adding debian:AffirmTrust_Premium.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:SecureTrust_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Izenpe.com.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:LuxTrust_Global_Root_2.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Certinomis_-_Root_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
done.
Setting up default-jre-headless (2:1.11-71) ...
Setting up libwww-perl (6.36-2) ...
Setting up maven-repo-helper (1.9.3) ...
Setting up antlr (2.7.7+dfsg-9.2) ...
Setting up dh-autoreconf (19) ...
Setting up devscripts (2.19.5+deb10u1) ...
Setting up ivy (2.4.0-5) ...
Setting up ant (1.10.5-2) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up junit4 (4.12-8) ...
Setting up liblwp-protocol-https-perl (6.07-2) ...
Setting up groovy (2.4.16-2) ...
update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode
update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode
update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode
update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode
update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode
update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode
update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode
update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode
Setting up debhelper (12.1.1) ...
Setting up ant-optional (1.10.5-2) ...
Setting up bnd (3.5.0-4) ...
Setting up libgradle-core-java (4.4.1-6) ...
Setting up libgradle-plugins-java (4.4.1-6) ...
Setting up javahelper (0.72.9) ...
Setting up gradle (4.4.1-6) ...
Setting up libistack-commons-java (3.0.6-3) ...
Setting up libcodemodel-java (2.6+jaxb2.3.0.1-8) ...
Setting up gradle-debian-helper (2.0.2) ...
Setting up libtxw2-java (2.3.0.1-8) ...
Setting up libjaxb-java (2.3.0.1-8) ...
Processing triggers for libc-bin (2.28-10) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.
Setting up openjdk-11-jre-headless:i386 (11.0.6+10-1~deb10u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
OpenJDK Client VM warning: Ignoring option PermSize; support was removed in 8.0
Setting up openjdk-11-jre:i386 (11.0.6+10-1~deb10u1) ...
Setting up openjdk-11-jdk-headless:i386 (11.0.6+10-1~deb10u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre (2:1.11-71) ...
Setting up default-jdk-headless (2:1.11-71) ...
Setting up openjdk-11-jdk:i386 (11.0.6+10-1~deb10u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk (2:1.11-71) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.23-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/htsjdk-2.18.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b
dpkg-buildpackage: info: source package htsjdk
dpkg-buildpackage: info: source version 2.18.2+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 fakeroot debian/rules clean
dh  clean  --buildsystem=gradle --with javahelper,jh_maven_repo_helper
   dh_auto_clean -O--buildsystem=gradle
	sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf"
	sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf"
	rm -Rf /build/htsjdk-2.18.2\+dfsg/.gradle /build/htsjdk-2.18.2\+dfsg/buildSrc/.gradle .m2
   dh_autoreconf_clean -O--buildsystem=gradle
   jh_clean -O--buildsystem=gradle
	rm -fr debian/_jh_manifest* debian/_jh_build*
	rm -fr debian/.eclipse-build
	rm -f debian/orbitdeps.debhelper
   mh_clean -O--buildsystem=gradle
   dh_clean -O--buildsystem=gradle
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/libhtsjdk-java.substvars debian/libhtsjdk-java-doc.substvars debian/files
	rm -fr -- debian/libhtsjdk-java/ debian/tmp/ debian/libhtsjdk-java-doc/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules build
dh  build  --buildsystem=gradle --with javahelper,jh_maven_repo_helper
   dh_update_autotools_config -O--buildsystem=gradle
   dh_autoreconf -O--buildsystem=gradle
   dh_auto_configure -O--buildsystem=gradle
   jh_linkjars -O--buildsystem=gradle
   debian/rules override_dh_auto_build
make[1]: Verzeichnis „/build/htsjdk-2.18.2+dfsg“ wird betreten
dh_auto_build -- jar javadoc
	mkdir -p .gradle/init.d
	cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
	gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=htsjdk -Dfile.encoding=UTF-8 --parallel --max-workers=18 jar javadoc
Initialized native services in: /build/htsjdk-2.18.2+dfsg/.gradle/native
Using 18 worker leases.
Creating new cache for fileHashes, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@16cf158
Creating new cache for resourceHashesCache, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@16cf158
Creating new cache for fileHashes, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@fac80
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader
WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release
Starting Build
Compiling initialization script '/build/htsjdk-2.18.2+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer.
Creating new cache for metadata-1.1/results, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@15c938d
Compiling initialization script '/build/htsjdk-2.18.2+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer.
Compiling settings file '/build/htsjdk-2.18.2+dfsg/settings.gradle' using SubsetScriptTransformer.
Compiling settings file '/build/htsjdk-2.18.2+dfsg/settings.gradle' using BuildScriptTransformer.
Settings evaluated using settings file '/build/htsjdk-2.18.2+dfsg/settings.gradle'.
Projects loaded. Root project using build file '/build/htsjdk-2.18.2+dfsg/build.gradle'.
Included projects: [root project 'htsjdk']
	Keep-alive timer started
	Adding Debian repository to project 'htsjdk'
Parallel execution is an incubating feature.
Evaluating root project 'htsjdk' using build file '/build/htsjdk-2.18.2+dfsg/build.gradle'.
Compiling build file '/build/htsjdk-2.18.2+dfsg/build.gradle' using SubsetScriptTransformer.
Compiling build file '/build/htsjdk-2.18.2+dfsg/build.gradle' using BuildScriptTransformer.
Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/htsjdk-2.18.2+dfsg Command: dpkg-parsechangelog -S Version
Successfully started process 'command 'dpkg-parsechangelog''
build for version:2.18.2
	Adding Maven pom generation to project 'htsjdk'
	Linking the generated javadoc to the system JDK API documentation
All projects evaluated.
Selected primary task 'jar' from project :
Creating new cache for annotation-processors, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1dac0b6
Selected primary task 'javadoc' from project :
Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar', task ':javadoc']
Creating new cache for resourceHashesCache, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@fac80
Creating new cache for taskHistory, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@2f0bb8
Creating new cache for outputFiles, path /build/htsjdk-2.18.2+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@851821
:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started.
:compileJava
Putting task artifact state for task ':compileJava' into context took 0.003 secs.
Creating new cache for metadata-2.36/module-metadata, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bcdd6e
	Loading the Maven rules...
	Replacing org.apache.commons:commons-jexl:jar:2.1.1  ->  org.apache.commons:commons-jexl:jar:debian
	Passing through org.apache.commons:commons-parent:jar:debian
	Passing through org.apache:apache:jar:debian
	Replacing commons-logging:commons-logging:jar:1.1.1  ->  commons-logging:commons-logging:jar:debian
	Replacing org.xerial.snappy:snappy-java:jar:1.1.4  ->  org.xerial.snappy:snappy-java:jar:debian
	Replacing org.apache.commons:commons-compress:jar:1.4.1  ->  org.apache.commons:commons-compress:jar:debian
	Replacing org.tukaani:xz:jar:1.5  ->  org.tukaani:xz:jar:debian
	Replacing gov.nih.nlm.ncbi:ngs-java:jar:2.9.0  ->  gov.nih.nlm.ncbi:ngs-java:jar:debian
	Passing through javax.xml.bind:jaxb-api:jar:debian
	Passing through javax.xml.bind:jaxb-api-parent:jar:debian
	Passing through javax.activation:javax.activation-api:jar:debian
javax.activation:javax.activation-api:debian is relocated to com.sun.activation:javax.activation:debian. Please update your dependencies.
	Passing through com.sun.activation:javax.activation:jar:debian
	Passing through com.sun.activation:all:jar:debian
Up-to-date check for task ':compileJava' took 0.652 secs. It is not up-to-date because:
  No history is available.
All input files are considered out-of-date for incremental task ':compileJava'.
Compiling with JDK Java compiler API.
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 5.611 secs.
:processResources (Thread[Task worker for ':' Thread 2,5,main]) started.
:processResources
Putting task artifact state for task ':processResources' into context took 0.0 secs.
file or directory '/build/htsjdk-2.18.2+dfsg/src/main/resources', not found
Skipping task ':processResources' as it has no source files and no previous output files.
:processResources NO-SOURCE
:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.006 secs.
:classes (Thread[Task worker for ':' Thread 2,5,main]) started.
:classes
Skipping task ':classes' as it has no actions.
:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs.
:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started.
:debianMavenPom
Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs.
Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because:
  No history is available.
	Generating pom file /build/htsjdk-2.18.2+dfsg/build/debian/htsjdk.pom
:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.03 secs.
:jar (Thread[Task worker for ':' Thread 2,5,main]) started.
:jar
Putting task artifact state for task ':jar' into context took 0.0 secs.
Up-to-date check for task ':jar' took 0.014 secs. It is not up-to-date because:
  No history is available.
:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.299 secs.
:javadoc (Thread[Task worker for ':' Thread 2,5,main]) started.
:javadoc
Putting task artifact state for task ':javadoc' into context took 0.0 secs.
Up-to-date check for task ':javadoc' took 0.082 secs. It is not up-to-date because:
  No history is available.
Starting process 'command '/usr/lib/jvm/java-11-openjdk-i386/bin/javadoc''. Working directory: /build/htsjdk-2.18.2+dfsg Command: /usr/lib/jvm/java-11-openjdk-i386/bin/javadoc @/build/htsjdk-2.18.2+dfsg/build/tmp/javadoc/javadoc.options
Successfully started process 'command '/usr/lib/jvm/java-11-openjdk-i386/bin/javadoc''
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/variant/bcf2/BCF2Codec.java:488: warning - @param argument "bufferedinput" is not a parameter name.
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/filter/IntervalFilter.java:53: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/filter/IntervalKeepPairFilter.java:59: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/index/DynamicIndexCreator.java:171: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/cram/io/ITF8.java:17: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/cram/io/ITF8.java:31: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/index/linear/LinearIndex.java:165: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/index/linear/LinearIndex.java:166: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/readers/LongLineBufferedReader.java:75: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/readers/LongLineBufferedReader.java:453: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/readers/Positional.java:45: warning - invalid usage of tag >
javadoc: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/Bin.java:106: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/Bin.java:106: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/CoordinateSortedPairInfoMap.java:194: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/DuplicateScoringStrategy.java:125: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/DuplicateScoringStrategy.java:150: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/GenomicIndexUtil.java:57: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/QueryInterval.java:18: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMFileHeader.java:331: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMFileWriterImpl.java:35: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMLineParser.java:221: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecord.java:53: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecord.java:159: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecord.java:159: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecord.java:774: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordComparator.java:37: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:39: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:39: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:40: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:40: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:40: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:40: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:40: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordCoordinateComparator.java:85: warning - invalid usage of tag <
javadoc: warning - invalid usage of tag <
javadoc: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMRecordQueryNameComparator.java:77: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMSortOrderChecker.java:42: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:655: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:655: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:641: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:642: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:642: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:655: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:655: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:656: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:656: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:1125: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMUtils.java:1125: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMValidationError.java:84: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SAMValidationError.java:84: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SQTagUtil.java:63: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SQTagUtil.java:63: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SQTagUtil.java:64: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/SQTagUtil.java:95: warning - invalid usage of tag >
javadoc: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/FeatureCodecHeader.java:31: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/tribble/FeatureCodecHeader.java:71: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/AbstractLocusIterator.java:210: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/AbstractLocusIterator.java:210: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/AbstractLocusIterator.java:210: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/AbstractLocusIterator.java:210: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:143: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:143: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:151: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:151: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:161: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:161: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:170: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:170: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:64: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java:64: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/BlockGunzipper.java:104: warning - Parameter "compressedBlock" is documented more than once.
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/CloserUtil.java:57: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/CloserUtil.java:57: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/CollectionUtil.java:108: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/CollectionUtil.java:108: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/FormatUtil.java:97: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/FormatUtil.java:97: warning - invalid usage of tag &
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/Histogram.java:344: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/Histogram.java:520: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/Histogram.java:344: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/Histogram.java:520: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalList.java:240: warning - invalid usage of tag {@link #uniqued()#getIntervals()
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalList.java:312: warning - invalid usage of tag {@link #uniqued(boolean)#getIntervals()
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalList.java:240: warning - invalid usage of tag {@link #uniqued()#getIntervals()
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalList.java:312: warning - invalid usage of tag {@link #uniqued(boolean)#getIntervals()
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalList.java:331: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalListReferenceSequenceMask.java:65: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalListReferenceSequenceMask.java:76: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalListReferenceSequenceMask.java:65: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalListReferenceSequenceMask.java:76: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalListReferenceSequenceMask.java:78: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalTree.java:213: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IntervalTree.java:310: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IOUtil.java:118: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IOUtil.java:118: warning - invalid usage of tag <
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IOUtil.java:165: warning - invalid usage of tag >
/build/htsjdk-2.18.2+dfsg/src/main/java/htsjdk/samtools/util/IOUtil.java:172: warning - invalid usage of tag >
100 warnings
:javadoc (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 6.531 secs.

BUILD SUCCESSFUL in 15s
4 actionable tasks: 4 executed
make[1]: Verzeichnis „/build/htsjdk-2.18.2+dfsg“ wird verlassen
   jh_build -O--buildsystem=gradle
	rm -f debian/libhtsjdk-java-doc.debhelper.log debian/libhtsjdk-java.debhelper.log
   debian/rules override_dh_auto_test
make[1]: Verzeichnis „/build/htsjdk-2.18.2+dfsg“ wird betreten
# testng bug 895886: testng: jcommander classes not found
dh_auto_build -- test
	mkdir -p .gradle/init.d
	cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
	gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=htsjdk -Dfile.encoding=UTF-8 --parallel --max-workers=18 test
Initialized native services in: /build/htsjdk-2.18.2+dfsg/.gradle/native
Using 18 worker leases.
Creating new cache for fileHashes, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@16cf158
Creating new cache for resourceHashesCache, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@16cf158
Creating new cache for fileHashes, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@fac80
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader
WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release
Starting Build
Creating new cache for metadata-1.1/results, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b48179
Settings evaluated using settings file '/build/htsjdk-2.18.2+dfsg/settings.gradle'.
Projects loaded. Root project using build file '/build/htsjdk-2.18.2+dfsg/build.gradle'.
Included projects: [root project 'htsjdk']
	Keep-alive timer started
	Adding Debian repository to project 'htsjdk'
Parallel execution is an incubating feature.
Evaluating root project 'htsjdk' using build file '/build/htsjdk-2.18.2+dfsg/build.gradle'.
Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/htsjdk-2.18.2+dfsg Command: dpkg-parsechangelog -S Version
Successfully started process 'command 'dpkg-parsechangelog''
build for version:2.18.2
	Adding Maven pom generation to project 'htsjdk'
	Linking the generated javadoc to the system JDK API documentation
All projects evaluated.
Selected primary task 'test' from project :
Creating new cache for annotation-processors, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@18b4846
Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':findScalaAndJavaTypes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test']
Creating new cache for resourceHashesCache, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@fac80
Creating new cache for taskHistory, path /build/htsjdk-2.18.2+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@e671ef
Creating new cache for outputFiles, path /build/htsjdk-2.18.2+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@930fc3
:compileJava (Thread[Task worker for ':' Thread 6,5,main]) started.
:compileJava
Putting task artifact state for task ':compileJava' into context took 0.003 secs.
Creating new cache for metadata-2.36/module-metadata, path /build/htsjdk-2.18.2+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@d2fb5
	Loading the Maven rules...
	Replacing org.apache.commons:commons-jexl:jar:2.1.1  ->  org.apache.commons:commons-jexl:jar:debian
	Passing through org.apache.commons:commons-parent:jar:debian
	Passing through org.apache:apache:jar:debian
	Replacing commons-logging:commons-logging:jar:1.1.1  ->  commons-logging:commons-logging:jar:debian
	Replacing org.xerial.snappy:snappy-java:jar:1.1.4  ->  org.xerial.snappy:snappy-java:jar:debian
	Replacing org.apache.commons:commons-compress:jar:1.4.1  ->  org.apache.commons:commons-compress:jar:debian
	Replacing org.tukaani:xz:jar:1.5  ->  org.tukaani:xz:jar:debian
	Replacing gov.nih.nlm.ncbi:ngs-java:jar:2.9.0  ->  gov.nih.nlm.ncbi:ngs-java:jar:debian
	Passing through javax.xml.bind:jaxb-api:jar:debian
	Passing through javax.xml.bind:jaxb-api-parent:jar:debian
	Passing through javax.activation:javax.activation-api:jar:debian
javax.activation:javax.activation-api:debian is relocated to com.sun.activation:javax.activation:debian. Please update your dependencies.
	Passing through com.sun.activation:javax.activation:jar:debian
	Passing through com.sun.activation:all:jar:debian
Skipping task ':compileJava' as it is up-to-date (took 0.442 secs).
:compileJava UP-TO-DATE
:compileJava (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 0.47 secs.
:processResources (Thread[Task worker for ':' Thread 6,5,main]) started.
:processResources
Putting task artifact state for task ':processResources' into context took 0.0 secs.
file or directory '/build/htsjdk-2.18.2+dfsg/src/main/resources', not found
Skipping task ':processResources' as it has no source files and no previous output files.
:processResources NO-SOURCE
:processResources (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 0.001 secs.
:classes (Thread[Task worker for ':' Thread 6,5,main]) started.
:classes
Skipping task ':classes' as it has no actions.
:classes UP-TO-DATE
:classes (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 0.0 secs.
:findScalaAndJavaTypes (Thread[Task worker for ':' Thread 6,5,main]) started.
:findScalaAndJavaTypes
Putting task artifact state for task ':findScalaAndJavaTypes' into context took 0.001 secs.
Up-to-date check for task ':findScalaAndJavaTypes' took 0.0 secs. It is not up-to-date because:
  Task has not declared any outputs.
Starting process 'command './scripts/checkScalaAndJavaFiles.sh''. Working directory: /build/htsjdk-2.18.2+dfsg Command: ./scripts/checkScalaAndJavaFiles.sh 
Successfully started process 'command './scripts/checkScalaAndJavaFiles.sh''
:findScalaAndJavaTypes (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 0.017 secs.
:compileTestJava (Thread[Task worker for ':' Thread 6,5,main]) started.
:compileTestJava
Putting task artifact state for task ':compileTestJava' into context took 0.0 secs.
	Passing through org.scala-lang:scala-library:jar:2.11.x
	Passing through org.testng:testng:jar:debian
	Passing through com.google.jimfs:jimfs:jar:debian
	Passing through com.google.jimfs:jimfs-parent:jar:debian
	Passing through com.google.guava:guava:jar:debian
	Passing through com.google.guava:guava-parent:jar:debian
	Passing through com.sun.xml.bind:jaxb-impl:jar:debian
com.sun.xml.bind:jaxb-impl:debian is relocated to org.glassfish.jaxb:jaxb-runtime:debian. Please update your dependencies.
	Passing through org.beanshell:bsh:jar:debian
	Passing through com.beust:jcommander:jar:debian
	Passing through org.glassfish.jaxb:jaxb-runtime:jar:debian
	Passing through com.sun.xml.bind.mvn:jaxb-runtime-parent:jar:debian
	Passing through com.sun.xml.bind.mvn:jaxb-parent:jar:debian
	Passing through com.sun.xml.bind:jaxb-bom-ext:jar:debian
	Passing through org.glassfish.jaxb:jaxb-bom:jar:debian
	Passing through org.glassfish.jaxb:jaxb-core:jar:debian
	Passing through org.jvnet.staxex:stax-ex:jar:debian
	Passing through com.sun.xml.fastinfoset:FastInfoset:jar:debian
	Passing through com.sun.xml.fastinfoset:fastinfoset-project:jar:debian
	Passing through org.glassfish.jaxb:txw2:jar:debian
	Passing through com.sun.xml.bind.mvn:jaxb-txw-parent:jar:debian
	Passing through com.sun.istack:istack-commons-runtime:jar:debian
	Passing through com.sun.istack:istack-commons:jar:debian
Up-to-date check for task ':compileTestJava' took 1.609 secs. It is not up-to-date because:
  No history is available.
All input files are considered out-of-date for incremental task ':compileTestJava'.
Compiling with JDK Java compiler API.
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
:compileTestJava (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 6.099 secs.
:processTestResources (Thread[Task worker for ':' Thread 6,5,main]) started.
:processTestResources
Putting task artifact state for task ':processTestResources' into context took 0.0 secs.
Up-to-date check for task ':processTestResources' took 0.229 secs. It is not up-to-date because:
  No history is available.
:processTestResources (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 0.583 secs.
:testClasses (Thread[Task worker for ':' Thread 6,5,main]) started.
:testClasses
Skipping task ':testClasses' as it has no actions.
:testClasses (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 0.0 secs.
:test (Thread[Task worker for ':' Thread 6,5,main]) started.
:test
Putting task artifact state for task ':test' into context took 0.0 secs.
Up-to-date check for task ':test' took 0.423 secs. It is not up-to-date because:
  Task.upToDateWhen is false.
Starting process 'Gradle Test Executor 1'. Working directory: /build/htsjdk-2.18.2+dfsg Command: /usr/lib/jvm/java-11-openjdk-i386/bin/java -Djava.awt.headless=true -Dorg.gradle.native=false @/tmp/gradle-worker-classpath14420815562932269231txt -Xms1G -Xmx2G -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1'
Successfully started process 'Gradle Test Executor 1'
Gradle Test Executor 1 started executing tests.

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[5](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[6](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstCompleteContigRead[7](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstCompleteContigRead runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstElementOfIterator runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstElementOfIterator runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstElementOfIterator runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstElementOfIterator runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstElementOfIterator runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[5](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstElementOfIterator runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[6](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstElementOfIterator runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstElementOfIterator[7](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstElementOfIterator runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequence[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstSequence runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequence[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testFirstSequence runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequence[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstSequence runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequence[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testFirstSequence runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequence[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstSequence runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequenceExtended[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstSequenceExtended runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequenceExtended[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testFirstSequenceExtended runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequenceExtended[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstSequenceExtended runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequenceExtended[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testFirstSequenceExtended runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testFirstSequenceExtended[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstSequenceExtended runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testLastCompleteContigRead runtime: 6ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testLastCompleteContigRead runtime: 4ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testLastCompleteContigRead runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testLastCompleteContigRead runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testLastCompleteContigRead runtime: 10ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[5](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testLastCompleteContigRead runtime: 9ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[6](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testLastCompleteContigRead runtime: 2ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastCompleteContigRead[7](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testLastCompleteContigRead runtime: 2ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastOfChr20[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstOfChr1 runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastOfChr20[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testFirstOfChr1 runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastOfChr20[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testFirstOfChr1 runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastOfChr20[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testFirstOfChr1 runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testLastOfChr20[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testFirstOfChr1 runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testNextElementOfIterator runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testNextElementOfIterator runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testNextElementOfIterator runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testNextElementOfIterator runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testNextElementOfIterator runtime: 10ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[5](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testNextElementOfIterator runtime: 10ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[6](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testNextElementOfIterator runtime: 2ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testNextElementOfIterator[7](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testNextElementOfIterator runtime: 2ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testOpenFile[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testOpenFile runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testOpenFile[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testOpenFile runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testOpenFile[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testOpenFile runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testOpenFile[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testOpenFile runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testOpenFile[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testOpenFile runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadPastEndOfContig[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadPastEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadPastEndOfContig[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadPastEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadPastEndOfContig[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadPastEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadPastEndOfContig[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadPastEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadPastEndOfContig[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testReadPastEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfFirstLine[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadStartingInCenterOfFirstLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfFirstLine[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadStartingInCenterOfFirstLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfFirstLine[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadStartingInCenterOfFirstLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfFirstLine[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadStartingInCenterOfFirstLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfFirstLine[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testReadStartingInCenterOfFirstLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfMiddleLine[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadStartingInCenterOfMiddleLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfMiddleLine[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadStartingInCenterOfMiddleLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfMiddleLine[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadStartingInCenterOfMiddleLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfMiddleLine[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadStartingInCenterOfMiddleLine runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadStartingInCenterOfMiddleLine[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testReadStartingInCenterOfMiddleLine runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadThroughEndOfContig[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadThroughEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadThroughEndOfContig[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadThroughEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadThroughEndOfContig[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReadThroughEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadThroughEndOfContig[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.nodict.fasta) STANDARD_ERROR
    testReadThroughEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReadThroughEndOfContig[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testReadThroughEndOfContig runtime: 0ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[0](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReset runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[1](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReset runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[2](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReset runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[3](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReset runtime: 1ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[4](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testReset runtime: 9ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[5](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta.gz) STANDARD_ERROR
    testReset runtime: 10ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[6](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReset runtime: 2ms

Gradle suite > Gradle test > htsjdk.samtools.reference.AbstractIndexedFastaSequenceFileTest.testReset[7](/build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta, /build/htsjdk-2.18.2+dfsg/src/test/resources/htsjdk/samtools/reference/Homo_sapiens_assembly18.trimmed.fasta) STANDARD_ERROR
    testReset runtime: 2ms

Gradle suite > Gradle test > htsjdk.samtools.BAMFileIndexTest.testQueryUnmapped STANDARD_OUT
    Found start of unmapped reads.  Num mapped reads: 9721
    Time so far: 0
    Linear scan total time: 0
    queryUnmapped time: 0
    Number of unmapped reads:279

Gradle suite > Gradle test > htsjdk.samtools.BAMFileIndexTest.testRandomQueries STANDARD_OUT
    Testing query chr11_random:7211102-7392752 ...
    Testing query chrX_random:2969904-3087323 ...
    Testing query chr5:9255377-9796767 ...
    Testing query chr16_random:9067406-9976989 ...
    Testing query chr6:2164417-9572211 ...
    Testing query chr8_random:5688357-6576007 ...
    Testing query chr4_random:4241203-6327831 ...
    Testing query chr2_random:411082-4462819 ...
    Testing query chr13_random:145947-4307287 ...
    Testing query chr15_random:3298214-6356603 ...
    Testing query chr21:472385-8291032 ...
    Testing query chr2:4177649-9835176 ...
    Testing query chr22_random:1490587-8781106 ...
    Testing query chr14:2167927-6299701 ...
    Testing query chr7:4700515-5593851 ...
    Testing query chr22:5016764-7470151 ...
    Testing query chr22_random:7524398-8627117 ...
    Testing query chr8:3764754-6977071 ...
    Testing query chr1_random:1725504-3204042 ...
    Testing query chr21:2025794-4625889 ...
    Testing query chr14:1426554-6327490 ...
    Testing query chrX_random:1992622-9650667 ...
    Testing query chr4:2669418-7183639 ...
    Testing query chr10:2967472-3641376 ...
    Testing query chr10_random:3273594-3427480 ...
    Testing query chr19_random:4582311-5090524 ...
    Testing query chr9_random:7218100-8812477 ...
    Testing query chrX:257134-4337775 ...
    Testing query chr9_random:713930-3536575 ...
    Testing query chrX:2523687-4774316 ...
    Testing query chr21:513221-829881 ...
    Testing query chr14:6924617-9048044 ...
    Testing query chr6:4945372-7173211 ...
    Testing query chr6_random:7501139-9077397 ...
    Testing query chr19:2934833-5141776 ...
    Testing query chr9:863231-7545153 ...
    Testing query chr2:4308042-6742767 ...
    Testing query chr12:293858-324418 ...
    Testing query chr6_random:3308674-4557713 ...
    Testing query chr2_random:6755655-7330097 ...
    Testing query chr9_random:1234763-6135261 ...
    Testing query chr17:7042296-7582149 ...
    Testing query chr18:6749235-8476299 ...
    Testing query chr22:1198031-6226173 ...
    Testing query chr22:9446557-9458998 ...
    Testing query chr15:473293-1136600 ...
    Testing query chr13:8001267-8034858 ...
    Testing query chr7_random:12779-8349897 ...
    Testing query chrX:6476995-9046675 ...
    Testing query chr22:455684-9901546 ...
    Testing query chr20:2540726-9004820 ...
    Testing query chr1:5290124-7772462 ...
    Testing query chr2_random:4562177-7629291 ...
    Testing query chr4:5992612-7734912 ...
    Testing query chr5:1027938-6017856 ...
    Testing query chr5:3945452-4558863 ...
    Testing query chr7_random:1434224-8766265 ...
    Testing query chr13_random:2806926-8471270 ...
    Testing query chr21:5896937-6230120 ...
    Testing query chr10_random:2325170-6773979 ...
    Testing query chr4:768115-9242973 ...
    Testing query chr9:204376-1523700 ...
    Testing query chr15:6918456-9920136 ...
    Testing query chr8:195836-2912231 ...
    Testing query chr4_random:8569316-9601747 ...
    Testing query chr14:7539676-8479802 ...
    Testing query chr17_random:6016149-9676582 ...
    Testing query chr3:2401075-5926977 ...
    Testing query chr7:6825835-8610049 ...
    Testing query chr4:8589977-9226779 ...
    Testing query chr22_random:881883-9900377 ...
    Testing query chr19:2282185-2974234 ...
    Testing query chr2_random:530137-7997036 ...
    Testing query chr11_random:1524078-8571487 ...
    Testing query chrX:3561537-3812547 ...
    Testing query chr7_random:5345040-8399303 ...
    Testing query chr22:1586323-6546266 ...
    Testing query chr13:356087-8263221 ...
    Testing query chr9:6308509-8761532 ...
    Testing query chr8:3702301-5705153 ...
    Testing query chr13_random:1656308-4034137 ...
    Testing query chr3:4684965-7862719 ...
    Testing query chr19_random:5585589-7312648 ...
    Testing query chr18:8395777-9280098 ...
    Testing query chr6_random:738052-6252176 ...
    Testing query chr5_random:6874632-8838246 ...
    Testing query chr7_random:4576401-9601286 ...
    Testing query chr6_random:1277796-9240909 ...
    Testing query chr22:2128956-7451924 ...
    Testing query chr9:5866041-7641214 ...
    Testing query chr6_random:2900603-6324004 ...
    Testing query chr5:3340073-3878152 ...
    Testing query chr7_random:6065731-8117472 ...
    Testing query chr22:6980282-9420307 ...
    Testing query chr3_random:7896234-9902729 ...
    Testing query chr4:5226514-9465698 ...
    Testing query chr11_random:2710966-7297413 ...
    Testing query chr4:5814391-6477874 ...
    Testing query chr17:3411447-7945931 ...
    Testing query chr19_random:1563833-8954930 ...
    Testing query chr4:2666458-5577064 ...
    Testing query chrM:2495375-2785830 ...
    Testing query chr22_random:2741863-7160257 ...
    Testing query chr20:3030962-4839827 ...
    Testing query chrX_random:1999206-3290596 ...
    Testing query chr1_random:7581574-9491516 ...
    Testing query chr5:8544911-9905206 ...
    Testing query chr17_random:5247411-8818598 ...
    Testing query chr18:2206748-2542618 ...
    Testing query chr6:5560095-6841213 ...
    Testing query chrX:5584638-8069137 ...
    Testing query chr2_random:893746-4019636 ...
    Testing query chr4_random:7220619-8625179 ...
    Testing query chr17_random:7487783-7745825 ...
    Testing query chr13_random:140415-4339843 ...
    Testing query chr22:3465880-9918684 ...
    Testing query chr16_random:2228554-5218116 ...
    Testing query chr6:3812651-9020894 ...
    Testing query chr19:4897072-8152584 ...
    Testing query chr15_random:2493596-3303830 ...
    Testing query chr17:7330256-9331563 ...
    Testing query chr7_random:2372609-7660988 ...
    Testing query chr21:16468-1408282 ...
    Testing query chrM:946718-7866529 ...
    Testing query chr6:636772-5261193 ...
    Testing query chr4:4081985-5160778 ...
    Testing query chr4_random:3992937-8001782 ...
    Testing query chr3_random:4269902-7314671 ...
    Testing query chr8_random:5398008-9100867 ...
    Testing query chr11_random:4717946-5886722 ...
    Testing query chr14:3324888-9762784 ...
    Testing query chr3_random:447076-2904415 ...
    Testing query chr18_random:4656587-8830031 ...
    Testing query chr15_random:2677992-8013872 ...
    Testing query chr8:8741342-9773821 ...
    Testing query chrM:638643-3884353 ...
    Testing query chr6:1102480-2996219 ...
    Testing query chr13:27071-9001996 ...
    Testing query chr8_random:133575-8239847 ...
    Testing query chr4:5119076-7497751 ...
    Testing query chr6_random:8932876-9157638 ...
    Testing query chr2:8039126-9556281 ...
    Testing query chr18:2759483-4424919 ...
    Testing query chr7_random:2162721-7693312 ...
    Testing query chr17_random:3212242-7079443 ...
    Testing query chrX_random:9441944-9675063 ...
    Testing query chrX:1483850-9503277 ...
    Testing query chrY:708618-2939362 ...
    Testing query chr1:1457571-8460228 ...
    Testing query chrM:5153488-6390263 ...
    Testing query chr8:2469944-5489240 ...
    Testing query chr4:2270560-9937550 ...
    Testing query chr10:1924284-4282155 ...
    Testing query chrY:5044757-9726553 ...
    Testing query chr21_random:8138434-8862076 ...
    Testing query chr17_random:8064209-8585636 ...
    Testing query chr22:7325448-9656485 ...
    Testing query chr11:6475178-6915306 ...
    Testing query chrM:1569370-6357214 ...
    Testing query chr8_random:1676954-7528262 ...
    Testing query chr8:3436473-9972209 ...
    Testing query chr19_random:8309162-8766514 ...
    Testing query chr7_random:6416981-6735864 ...
    Testing query chr19:3484685-3801122 ...
    Testing query chr1:1868925-6151268 ...
    Testing query chr1:536419-4044558 ...
    Testing query chr1:2522877-4924643 ...
    Testing query chr11_random:676633-9128847 ...
    Testing query chr6_random:3598124-6981657 ...
    Testing query chr5_random:7166103-8219161 ...
    Testing query chr19:1684800-5872548 ...
    Testing query chr1_random:3315026-8441262 ...
    Testing query chr18_random:2290355-8594736 ...
    Testing query chr20:3121858-8750525 ...
    Testing query chr5:1854779-7785465 ...
    Testing query chr3:2844488-8229201 ...
    Testing query chr9:98994-6937193 ...
    Testing query chr7_random:566405-4329525 ...
    Testing query chrM:3349123-8858299 ...
    Testing query chr18_random:2476805-3333909 ...
    Testing query chr5_random:2947230-5023103 ...
    Testing query chrY:858711-3764404 ...
    Testing query chrM:3202756-4087290 ...
    Testing query chr3:2241212-3744434 ...
    Testing query chr2:294299-2791063 ...
    Testing query chr16:5636813-7725712 ...
    Testing query chrY:190457-4183568 ...
    Testing query chr15_random:1757556-6243468 ...
    Testing query chr21_random:2404640-9698959 ...
    Testing query chrY:2899895-8525822 ...
    Testing query chr14:5316023-9325638 ...
    Testing query chr5_random:3836137-6496666 ...
    Testing query chr10_random:1992029-2390509 ...
    Testing query chr15:2008393-5397033 ...
    Testing query chr6:3033491-5689013 ...
    Testing query chr13:4802709-6651494 ...
    Testing query chr11_random:1126435-2590416 ...
    Testing query chr14:674415-1741256 ...
    Testing query chr2:5945864-7917088 ...
    Testing query chr4:2984861-4376484 ...
    Testing query chr1_random:5661261-9348854 ...
    Testing query chr18:2892586-9538492 ...
    Testing query chr19_random:2666788-6214501 ...
    Testing query chr5_random:2892340-8892790 ...
    Testing query chr3:8321138-9156829 ...
    Testing query chr20:1010051-2675065 ...
    Testing query chr12:2016127-9734230 ...
    Testing query chr17:6565364-9842724 ...
    Testing query chr2_random:1534009-9935421 ...
    Testing query chr22_random:1798866-3566302 ...
    Testing query chr9_random:2863862-4098636 ...
    Testing query chr7_random:6695702-7166373 ...
    Testing query chr19_random:7774915-8904502 ...
    Testing query chr4_random:1354793-3060860 ...
    Testing query chr16_random:680783-7967813 ...
    Testing query chr22_random:1679274-1962853 ...
    Testing query chr5:1405068-3861785 ...
    Testing query chr8_random:6642950-9011653 ...
    Testing query chr16:1873173-7921837 ...
    Testing query chr7_random:2750681-9520458 ...
    Testing query chr16_random:885218-3713066 ...
    Testing query chr10_random:4952036-9328892 ...
    Testing query chr1_random:1556041-9207413 ...
    Testing query chrX:3509058-4668683 ...
    Testing query chr22_random:5775297-9086853 ...
    Testing query chr1:1171026-6903635 ...
    Testing query chr17_random:706069-7256916 ...
    Testing query chr1:7825983-8559769 ...
    Testing query chr7_random:7709758-9250068 ...
    Testing query chr6:4475592-7218806 ...
    Testing query chr5_random:7263397-7305993 ...
    Testing query chr16_random:5376132-9863064 ...
    Testing query chr5:4383593-4921390 ...
    Testing query chr12:5541381-6329888 ...
    Testing query chr7_random:297473-6191920 ...
    Testing query chr7_random:5797186-6007720 ...
    Testing query chr14:6288978-7147625 ...
    Testing query chrY:3280527-6071425 ...
    Testing query chr2_random:341241-9849655 ...
    Testing query chr18_random:2756400-5124352 ...
    Testing query chr18_random:3245587-6421468 ...
    Testing query chr7_random:1108885-7011416 ...
    Testing query chr19:55506-8032351 ...
    Testing query chr9_random:507759-1925801 ...
    Testing query chr21_random:5641470-6291456 ...
    Testing query chr16_random:2647045-6473932 ...
    Testing query chr3:8883638-9872842 ...
    Testing query chr17:2328196-3652679 ...
    Testing query chr22_random:2297511-5498425 ...
    Testing query chrX_random:3773240-4693054 ...
    Testing query chr13:1575245-9070298 ...
    Testing query chr8_random:5301468-7005527 ...
    Testing query chr4:6535020-9656212 ...
    Testing query chr18:5782944-8199590 ...
    Testing query chr5_random:1102579-7463246 ...
    Testing query chr5:2779653-6802521 ...
    Testing query chr10:99615-2172940 ...
    Testing query chr7:2762506-2870870 ...
    Testing query chr15_random:981768-8907527 ...
    Testing query chr16:436530-5189740 ...
    Testing query chr15:9551545-9569163 ...
    Testing query chr17_random:432471-8074112 ...
    Testing query chr8:4845184-5039976 ...
    Testing query chr7:3531770-6086719 ...
    Testing query chr17:2693356-7185572 ...
    Testing query chr6:6650063-9646384 ...
    Testing query chrY:121317-4718433 ...
    Testing query chr1_random:1003027-1831870 ...
    Testing query chr21:8788645-9420609 ...
    Testing query chr13_random:987064-4341370 ...
    Testing query chr13_random:842466-5111480 ...
    Testing query chrM:7654248-8310027 ...
    Testing query chr2:1532378-3980671 ...
    Testing query chr16_random:2308350-8259941 ...
    Testing query chr18_random:7619793-8200073 ...
    Testing query chr16:908998-6962421 ...
    Testing query chr1_random:4760134-7897692 ...
    Testing query chr4_random:351969-2613223 ...
    Testing query chr16:3482498-9633584 ...
    Testing query chr22:7907949-9933800 ...
    Testing query chr15:5854248-7275283 ...
    Testing query chr14:3664791-8748133 ...
    Testing query chrX:896137-9572469 ...
    Testing query chrX:1865390-3062428 ...
    Testing query chr6:595893-8247348 ...
    Testing query chr9_random:1425130-4402172 ...
    Testing query chr7_random:463001-1378501 ...
    Testing query chr10:5465621-8140677 ...
    Testing query chr22:4007755-6030817 ...
    Testing query chr19:2152758-4285738 ...
    Testing query chrX_random:6197638-7278734 ...
    Testing query chr8_random:2506286-3132074 ...
    Testing query chr3:5088917-6346018 ...
    Testing query chr21_random:709245-2447062 ...
    Testing query chr7_random:2297450-2733491 ...
    Testing query chrX_random:75616-6715390 ...
    Testing query chr14:1451557-9217186 ...
    Testing query chr22:4216648-4273083 ...
    Testing query chr22_random:2900019-9495009 ...
    Testing query chr4:6062237-9450155 ...
    Testing query chr3_random:2205998-8038523 ...
    Testing query chr19:4006735-8497976 ...
    Testing query chrM:4367909-8743630 ...
    Testing query chr1:3235237-5886681 ...
    Testing query chr18:2455071-8918070 ...
    Testing query chr3:715763-7415212 ...
    Testing query chr2_random:3698070-6718252 ...
    Testing query chr10:4035923-8780337 ...
    Testing query chr1_random:4369783-9221375 ...
    Testing query chr11:3488452-9565235 ...
    Testing query chrX:3524615-7110878 ...
    Testing query chr19_random:7779323-8424172 ...
    Testing query chr15_random:910898-4876910 ...
    Testing query chr15_random:1015024-3678499 ...
    Testing query chr9:3393986-9417756 ...
    Testing query chr18_random:857279-9200045 ...
    Testing query chr18:1396324-2772435 ...
    Testing query chr12:5614369-9031405 ...
    Testing query chr5:3780359-4070909 ...
    Testing query chr17:4508678-5389778 ...
    Testing query chr21_random:6972726-7854603 ...
    Testing query chr12:3182535-8039198 ...
    Testing query chr10:3951103-7166395 ...
    Testing query chr5_random:6532707-9837900 ...
    Testing query chr13_random:7985015-9743703 ...
    Testing query chr20:6134113-9969678 ...
    Testing query chrY:1542908-4899134 ...
    Testing query chr19_random:324180-7673324 ...
    Testing query chr22_random:4465119-8807791 ...
    Testing query chr14:4342424-6275354 ...
    Testing query chr21:3393386-7099240 ...
    Testing query chr3_random:2130566-2642809 ...
    Testing query chr1_random:2534189-6047752 ...
    Testing query chrM:3319509-8627744 ...
    Testing query chr4_random:7027413-8546790 ...
    Testing query chr18:5213087-7307044 ...
    Testing query chrX_random:5138706-7179617 ...
    Testing query chr21:1746459-3369825 ...
    Testing query chr17_random:4364489-9952653 ...
    Testing query chr21_random:2852383-6343308 ...
    Testing query chr16:1718072-7027200 ...
    Testing query chr7:2836942-5941970 ...
    Testing query chr21_random:6013526-6739121 ...
    Testing query chr6:2041720-8080188 ...
    Testing query chr20:5614189-8320637 ...
    Testing query chr18:7510033-9259036 ...
    Testing query chr7_random:5464431-5858425 ...
    Testing query chrX_random:2642097-9170108 ...
    Testing query chr21_random:2372613-7228145 ...
    Testing query chr7:7643929-8629915 ...
    Testing query chrM:1496669-3662785 ...
    Testing query chrM:5816559-7988640 ...
    Testing query chr4_random:3216837-5344216 ...
    Testing query chr8_random:7939352-9193364 ...
    Testing query chr11_random:4477474-7119222 ...
    Testing query chr22:1795085-7018163 ...
    Testing query chr2:489045-5507534 ...
    Testing query chr20:228222-2645827 ...
    Testing query chr2_random:6696262-7193942 ...
    Testing query chrX:624678-2022130 ...
    Testing query chr11_random:7420609-7476969 ...
    Testing query chr7_random:35741-8947140 ...
    Testing query chr9:2887670-8574309 ...
    Testing query chr9_random:5022666-8213630 ...
    Testing query chr16_random:2811399-8122673 ...
    Testing query chr19:2563169-2938289 ...
    Testing query chr15_random:3165794-8354108 ...
    Testing query chr1_random:4114915-9235471 ...
    Testing query chr10_random:983161-9480146 ...
    Testing query chr2:5984445-9861542 ...
    Testing query chr21:2955353-3709382 ...
    Testing query chr18:4220403-7713605 ...
    Testing query chr9:5837376-6191557 ...
    Testing query chr18:3760903-6211242 ...
    Testing query chr4:2604919-6869284 ...
    Testing query chr14:8243966-8657979 ...
    Testing query chrX:8572226-9566286 ...
    Testing query chr15_random:1776922-9379642 ...
    Testing query chr11:6484864-9835462 ...
    Testing query chr13_random:2265643-8434104 ...
    Testing query chr18_random:2936640-6667223 ...
    Testing query chr21_random:6212251-8673018 ...
    Testing query chr1_random:1062720-2585432 ...
    Testing query chr21_random:5965453-7655829 ...
    Testing query chrX_random:2147524-2773583 ...
    Testing query chr13_random:368974-2821747 ...
    Testing query chr5_random:1943780-5626512 ...
    Testing query chr20:30472-8431478 ...
    Testing query chr10_random:1574710-2300026 ...
    Testing query chr16_random:5290469-9294719 ...
    Testing query chr22:2213818-3185623 ...
    Testing query chr18:2186838-5554932 ...
    Testing query chr1_random:4416515-6829118 ...
    Testing query chr17_random:4168349-9033195 ...
    Testing query chr4_random:7231065-9006087 ...
    Testing query chr3:6627861-7098084 ...
    Testing query chr21:4791386-7462661 ...
    Testing query chr6:5486440-6497547 ...
    Testing query chr7:7583780-8490132 ...
    Testing query chr15:4167629-9516050 ...
    Testing query chr13:412129-3106131 ...
    Testing query chr6:2242528-3392002 ...
    Testing query chr13:4573366-8565166 ...
    Testing query chr14:1012727-4265512 ...
    Testing query chrX:8331093-8914945 ...
    Testing query chr19:3587675-9174187 ...
    Testing query chr7:296443-1800051 ...
    Testing query chr3:5277077-9767087 ...
    Testing query chr21:7692109-7739057 ...
    Testing query chr11:3448455-8411453 ...
    Testing query chr1_random:2275881-3676442 ...
    Testing query chr4_random:6322956-7587151 ...
    Testing query chr22_random:4609088-7067795 ...
    Testing query chr11:1103974-5115622 ...
    Testing query chr17:8733322-9618772 ...
    Testing query chr5_random:1779768-6935553 ...
    Testing query chr8_random:2538535-9879832 ...
    Testing query chr22:768294-3209930 ...
    Testing query chr22:943981-2330158 ...
    Testing query chr12:4987241-7314877 ...
    Testing query chr2:3120747-6311500 ...
    Testing query chrX:1829150-5592634 ...
    Testing query chr7:795351-9692074 ...
    Testing query chr9:5469158-7108447 ...
    Testing query chr18:1967306-6204810 ...
    Testing query chr4_random:8969152-9598463 ...
    Testing query chr4_random:1579186-2839628 ...
    Testing query chr15:5974419-7281533 ...
    Testing query chr8_random:3609626-6631230 ...
    Testing query chr17:3094989-6618173 ...
    Testing query chr15:1799279-6576530 ...
    Testing query chr3:5157964-8423765 ...
    Testing query chr22_random:2813926-5797993 ...
    Testing query chr2:2248206-3931961 ...
    Testing query chr7:3205910-9801772 ...
    Testing query chr21_random:623490-6775587 ...
    Testing query chrM:8166786-8509161 ...
    Testing query chr17:1804940-2950404 ...
    Testing query chr10_random:2511464-6816559 ...
    Testing query chr21_random:153036-5827934 ...
    Testing query chr2_random:8263243-9685626 ...
    Testing query chr21:1111482-5812333 ...
    Testing query chr8:4290604-9166817 ...
    Testing query chr13:3398929-7913910 ...
    Testing query chr10:4553797-9072246 ...
    Testing query chr20:7207944-7471721 ...
    Testing query chrY:1982521-2897985 ...
    Testing query chr10_random:5100074-7818426 ...
    Testing query chr15:4365944-8388476 ...
    Testing query chr13:50044-8373169 ...
    Testing query chr12:5115399-7648840 ...
    Testing query chr4:2962742-8829366 ...
    Testing query chr6_random:1322565-9235978 ...
    Testing query chr12:6057343-7930326 ...
    Testing query chr3:1612029-2982153 ...
    Testing query chr15:6582900-8591795 ...
    Testing query chr21:5009971-6424414 ...
    Testing query chr6:706279-8162934 ...
    Testing query chr16:3267535-9670332 ...
    Testing query chr16:2694606-3346697 ...
    Testing query chrY:9108749-9339860 ...
    Testing query chr18:1265164-5476362 ...
    Testing query chr8_random:1135765-3131623 ...
    Testing query chr1_random:4068577-5850392 ...
    Testing query chr10_random:8086436-9515610 ...
    Testing query chr12:786080-9272524 ...
    Testing query chr2_random:3529918-9107547 ...
    Testing query chrX:33039-720704 ...
    Testing query chrY:7759964-8753893 ...
    Testing query chr18_random:9023306-9399435 ...
    Testing query chr6:5281117-9258674 ...
    Testing query chr2_random:3737881-7335740 ...
    Testing query chr18_random:486302-3415910 ...
    Testing query chr9_random:4036001-4224366 ...
    Testing query chr1_random:676459-981484 ...
    Testing query chr21:213055-9194219 ...
    Testing query chr3:5273397-7935759 ...
    Testing query chr7:5844019-5928029 ...
    Testing query chr22:4400032-4947008 ...
    Testing query chr1_random:6368632-9050986 ...
    Testing query chr6_random:3521181-8577335 ...
    Testing query chr11_random:4864475-5742060 ...
    Testing query chr9:691952-3618418 ...
    Testing query chr16:5899296-6778697 ...
    Testing query chr16:865613-6607475 ...
    Testing query chr17_random:4739682-6923211 ...
    Testing query chrY:2356621-4914419 ...
    Testing query chr3_random:1842297-6259766 ...
    Testing query chr3_random:5126637-7321281 ...
    Testing query chrX:4209013-9761426 ...
    Testing query chr5_random:4596157-5675945 ...
    Testing query chr21_random:3696079-6024271 ...
    Testing query chr3_random:5067064-8876286 ...
    Testing query chr21_random:5565110-6689301 ...
    Testing query chr21_random:15781-4584722 ...
    Testing query chr1:3346110-7059075 ...
    Testing query chrX:5966696-6933232 ...
    Testing query chr17:5021510-8070334 ...
    Testing query chr6:1149206-6788407 ...
    Testing query chr3_random:3744515-8291994 ...
    Testing query chr2:22996-4588290 ...
    Testing query chr17_random:5326761-6699939 ...
    Testing query chr11_random:2696057-3080563 ...
    Testing query chr9:6885746-7594235 ...
    Testing query chr2:4534733-7295296 ...
    Testing query chr13_random:3998213-9469962 ...
    Testing query chr1_random:5426791-6149949 ...
    Testing query chr9_random:530950-725978 ...
    Testing query chr11:4184033-9403368 ...
    Testing query chr15_random:1456012-6938955 ...
    Testing query chr4:527074-2332486 ...
    Testing query chr15:6231961-6744661 ...
    Testing query chr4_random:1429017-4799661 ...
    Testing query chrX_random:1288951-8906564 ...
    Testing query chr5:203973-5396390 ...
    Testing query chr22_random:6924137-9556382 ...
    Testing query chr13:3692768-5792536 ...
    Testing query chr7_random:4736121-7190035 ...
    Testing query chr19_random:1067060-5424230 ...
    Testing query chr5:4645403-9655346 ...
    Testing query chr21:6194788-9692460 ...
    Testing query chr3_random:6249249-8849610 ...
    Testing query chr1_random:116005-4931104 ...
    Testing query chr9_random:2264542-9177908 ...
    Testing query chr5:1920701-3940100 ...
    Testing query chr19:3510626-6120416 ...
    Testing query chr8_random:1385330-9139475 ...
    Testing query chr5_random:4560385-9932819 ...
    Testing query chr10_random:1546770-4255829 ...
    Testing query chrY:1634712-6195051 ...
    Testing query chr21:1934284-3805640 ...
    Testing query chr10:1098075-1222293 ...
    Testing query chrX:3147440-5915627 ...
    Testing query chr12:644340-9578661 ...
    Testing query chr7:3815107-7552297 ...
    Testing query chr7_random:979254-6592345 ...
    Testing query chr15_random:4031375-9529529 ...
    Testing query chr20:809453-6417655 ...
    Testing query chr3_random:1311668-6592135 ...
    Testing query chr16_random:4796848-9917504 ...
    Testing query chr2:2316239-8809758 ...
    Testing query chr22_random:3700813-7193581 ...
    Testing query chr2_random:5629881-8301170 ...
    Testing query chr2:4292815-5793077 ...
    Testing query chr16:4963697-5732378 ...
    Testing query chr20:1818167-2602981 ...
    Testing query chr13_random:857910-3186701 ...
    Testing query chr8:7828099-7863231 ...
    Testing query chr2:3039751-5869790 ...
    Testing query chr7_random:948462-2258714 ...
    Testing query chr12:2176474-8835346 ...
    Testing query chr4_random:4818082-9335116 ...
    Testing query chr9_random:949590-4937462 ...
    Testing query chr3_random:139177-2147902 ...
    Testing query chr15_random:4086655-7110200 ...
    Testing query chr7:1707937-7031178 ...
    Testing query chr15:6704897-7523233 ...
    Testing query chr8_random:3261310-3388805 ...
    Testing query chr11:4627964-9758513 ...
    Testing query chr3_random:1269243-5807226 ...
    Testing query chr9_random:564250-7036410 ...
    Testing query chr8_random:5129373-5437488 ...
    Testing query chr18:2171501-3304941 ...
    Testing query chr17_random:5747642-6505556 ...
    Testing query chrY:3819311-5517038 ...
    Testing query chr11_random:4980823-9419145 ...
    Testing query chrX:3246258-6297440 ...
    Testing query chr1_random:810216-9835846 ...
    Testing query chr9_random:227030-6294798 ...
    Testing query chr1_random:301295-1576363 ...
    Testing query chr21:4560202-9527465 ...
    Testing query chr11:3926303-4702504 ...
    Testing query chr13_random:4053954-7799426 ...
    Testing query chr8_random:1615788-4228091 ...
    Testing query chrX:5354321-7998054 ...
    Testing query chr5:428791-7222158 ...
    Testing query chrY:5600982-5656729 ...
    Testing query chr4_random:3857931-8313241 ...
    Testing query chr15:1925774-5199208 ...
    Testing query chr11_random:1107850-6997032 ...
    Testing query chr14:2769511-5526141 ...
    Testing query chr22:1129798-7717631 ...
    Testing query chr22_random:2940332-5279177 ...
    Testing query chr9:1067427-1150594 ...
    Testing query chr8:5146545-9541542 ...
    Testing query chr15:7089597-8473958 ...
    Testing query chr12:5527737-5802706 ...
    Testing query chr7:1551097-6396733 ...
    Testing query chr2_random:3022570-3558123 ...
    Testing query chr5_random:385945-6563916 ...
    Testing query chr19_random:3546106-9160937 ...
    Testing query chr15_random:3701260-8137083 ...
    Testing query chr5:1805515-5128679 ...
    Testing query chr10_random:748486-5680503 ...
    Testing query chr18:1342370-7881611 ...
    Testing query chr18_random:770908-6308398 ...
    Testing query chr19:7484581-8473209 ...
    Testing query chr7:4518548-7588072 ...
    Testing query chr9_random:7255308-8443827 ...
    Testing query chrX:5799987-8117438 ...
    Testing query chr14:7540848-8413963 ...
    Testing query chr19_random:2328053-2556284 ...
    Testing query chr16_random:7230921-7518347 ...
    Testing query chr19_random:276347-1547597 ...
    Testing query chr13:765679-7048818 ...
    Testing query chrM:2605992-5897739 ...
    Testing query chrX:7913839-8348655 ...
    Testing query chr2_random:7115229-7577760 ...
    Testing query chr21:7618516-8976664 ...
    Testing query chr10_random:5113402-9511617 ...
    Testing query chr3_random:2749825-6235208 ...
    Testing query chr7_random:4542464-5736534 ...
    Testing query chr22:3287391-8684233 ...
    Testing query chr1:6551268-8138439 ...
    Testing query chr18_random:7072081-7642659 ...
    Testing query chr1_random:375703-2560467 ...
    Testing query chr21:5140483-9431223 ...
    Testing query chr19:320517-7295855 ...
    Testing query chr12:585392-5511186 ...
    Testing query chr18_random:8083366-8235379 ...
    Testing query chr10:126713-1547118 ...
    Testing query chr10:5632955-8746379 ...
    Testing query chr10_random:3676138-6848091 ...
    Testing query chr9:4589897-9207905 ...
    Testing query chr6_random:7846883-9764185 ...
    Testing query chr18_random:4290690-8214747 ...
    Testing query chr13_random:2540819-4559633 ...
    Testing query chr11_random:3861379-5778337 ...
    Testing query chr16_random:1701866-3678380 ...
    Testing query chr15:6359944-8126244 ...
    Testing query chr9_random:3748170-8007098 ...
    Testing query chr9:7943740-9455802 ...
    Testing query chr19_random:1042691-5523628 ...
    Testing query chr1_random:1492517-5228447 ...
    Testing query chr6:5705000-6113711 ...
    Testing query chr20:323999-8013692 ...
    Testing query chr10_random:2403788-4666817 ...
    Testing query chr12:809220-4859122 ...
    Testing query chr7:4626441-6767688 ...
    Testing query chr9:1227373-9861818 ...
    Testing query chr9_random:1646320-4830906 ...
    Testing query chr5:1816686-8010796 ...
    Testing query chr18_random:2978620-4099625 ...
    Testing query chr2:2092284-6363784 ...
    Testing query chr11:6697928-8978854 ...
    Testing query chr15:4328362-7736553 ...
    Testing query chr19:2684370-4694361 ...
    Testing query chr8_random:1549783-2052889 ...
    Testing query chr10_random:343773-5114298 ...
    Testing query chr22:239978-7311092 ...
    Testing query chr10:59830-4498628 ...
    Testing query chr6_random:4394006-8726576 ...
    Testing query chr2:2521493-6006376 ...
    Testing query chrY:174190-248602 ...
    Testing query chr5_random:3175374-3810594 ...
    Testing query chr21:458207-4328406 ...
    Testing query chr7:746735-8755260 ...
    Testing query chr1:8376346-9926832 ...
    Testing query chrX:1558302-6671795 ...
    Testing query chr3:90115-6523026 ...
    Testing query chr17_random:1954593-2055586 ...
    Testing query chr9:2137572-9471850 ...
    Testing query chr18_random:7412031-7927783 ...
    Testing query chr7:2153207-4745373 ...
    Testing query chrX:4532293-8914932 ...
    Testing query chr11:2910609-3421044 ...
    Testing query chr9:6096367-7279687 ...
    Testing query chr3:2070513-7395995 ...
    Testing query chr8_random:835918-1827839 ...
    Testing query chr18:248820-4981110 ...
    Testing query chr11_random:4573607-7438971 ...
    Testing query chrX:4061785-7455437 ...
    Testing query chr3:5179852-5811856 ...
    Testing query chr7_random:3320586-3880101 ...
    Testing query chr22:1201575-8615117 ...
    Testing query chr4:6832003-9027563 ...
    Testing query chr5_random:2075108-2231968 ...
    Testing query chrX_random:59800-714902 ...
    Testing query chrX_random:2828941-5491980 ...
    Testing query chr8:1038109-7255118 ...
    Testing query chr19:564478-5162536 ...
    Testing query chr21:6696589-7247970 ...
    Testing query chr6:918960-1474816 ...
    Testing query chrM:5636321-9968137 ...
    Testing query chr7_random:5485027-5682623 ...
    Testing query chrY:4149126-7271874 ...
    Testing query chrX_random:2119447-7981903 ...
    Testing query chr8:392266-4278110 ...
    Testing query chr15:126791-8741531 ...
    Testing query chrY:1970354-3699838 ...
    Testing query chr16:4070891-8181737 ...
    Testing query chr18_random:1308317-5408953 ...
    Testing query chr9:1486842-2579174 ...
    Testing query chr9_random:3614823-8021197 ...
    Testing query chr19_random:4100590-7401362 ...
    Testing query chr13:9198949-9562213 ...
    Testing query chr13_random:3477250-5979150 ...
    Testing query chr8:702816-7724269 ...
    Testing query chrX:1173848-9916277 ...
    Testing query chr19_random:1528939-7213477 ...
    Testing query chrY:4055178-8006125 ...
    Testing query chr21_random:5600720-8897721 ...
    Testing query chr13:5754292-7802376 ...
    Testing query chr6_random:2337681-6172508 ...
    Testing query chr2:5799739-7134812 ...
    Testing query chrX_random:3353632-6262401 ...
    Testing query chr21:945894-5132876 ...
    Testing query chr18_random:2350673-9531784 ...
    Testing query chr22_random:5048930-8474866 ...
    Testing query chr19:6352226-8501858 ...
    Testing query chr20:3392059-9830746 ...
    Testing query chr16_random:4090981-7752074 ...
    Testing query chr11_random:5905570-6251642 ...
    Testing query chr13:360298-9358487 ...
    Testing query chr6_random:882947-4758560 ...
    Testing query chr11:2340078-2932391 ...
    Testing query chr22_random:2213551-2534609 ...
    Testing query chr21:5841676-5846763 ...
    Testing query chr11_random:4038782-7000307 ...
    Testing query chr6_random:25409-5762752 ...
    Testing query chr16:5928354-8501435 ...
    Testing query chrY:694230-6280406 ...
    Testing query chr11:7243231-8376959 ...
    Testing query chr16_random:7306380-8046651 ...
    Testing query chr16:1271045-7843225 ...
    Testing query chr15:3261152-4143715 ...
    Testing query chr16:3643483-7977448 ...
    Testing query chrM:2682115-4251696 ...
    Testing query chrM:8447185-9660353 ...
    Testing query chr17_random:4662108-9040099 ...
    Testing query chr15:2717869-3422290 ...
    Testing query chr9_random:2276674-4258729 ...
    Testing query chrX_random:975097-5521164 ...
    Testing query chr11:2146529-8617542 ...
    Testing query chr10_random:1180053-8007684 ...
    Testing query chr3_random:3693000-4565796 ...
    Testing query chr11:145445-2682401 ...
    Testing query chr8_random:6750591-7945127 ...
    Testing query chr1:8320362-9511438 ...
    Testing query chr8:7013549-9472948 ...
    Testing query chr13_random:3536637-5003209 ...
    Testing query chr9:6558793-7284938 ...
    Testing query chr21_random:2580219-9412760 ...
    Testing query chr10:406321-2977770 ...
    Testing query chr21:492284-7994828 ...
    Testing query chr8:2657319-7983432 ...
    Testing query chrX:4732048-8043746 ...
    Testing query chr20:3307597-9305376 ...
    Testing query chr2_random:755380-8957174 ...
    Testing query chrY:2933069-9880634 ...
    Testing query chr6:774738-5674081 ...
    Testing query chr22_random:715809-9050909 ...
    Testing query chr4:1349527-3344979 ...
    Testing query chr6:8028105-9684178 ...
    Testing query chr5_random:4787471-8881473 ...
    Testing query chr10_random:2634703-3696440 ...
    Testing query chr11_random:829085-1727870 ...
    Testing query chr15_random:592933-9165180 ...
    Testing query chr4_random:4418610-8898086 ...
    Testing query chrX_random:2431444-6884713 ...
    Testing query chr8_random:6475456-8480814 ...
    Testing query chr7:3815530-7026545 ...
    Testing query chr19:7331585-7602899 ...
    Testing query chr1_random:874465-3320587 ...
    Testing query chr13_random:733794-6825035 ...
    Testing query chr15_random:9014536-9668872 ...
    Testing query chr17_random:6591609-9129777 ...
    Testing query chrM:656068-4356620 ...
    Testing query chr8:405654-9125605 ...
    Testing query chrX:2091850-6675177 ...
    Testing query chr17_random:7703315-8296743 ...
    Testing query chr5:6509082-7915180 ...
    Testing query chr22:2553656-7681295 ...
    Testing query chr14:3268086-7514168 ...
    Testing query chr8:4422671-6192314 ...
    Testing query chr1:65591-912831 ...
    Testing query chr3_random:5754696-6365576 ...
    Testing query chr19:3761804-6226235 ...
    Testing query chr15_random:437782-2343429 ...
    Testing query chr21_random:6464723-8352688 ...
    Testing query chr2:2429164-5768260 ...
    Testing query chr4:470318-7002218 ...
    Testing query chr4:3690943-5461445 ...
    Testing query chr22_random:5183905-6703677 ...
    Testing query chr6:956010-4837181 ...
    Testing query chr22_random:4644999-6726863 ...
    Testing query chr3:461910-2847795 ...
    Testing query chrM:1898841-4804510 ...
    Testing query chr17_random:4508018-9521979 ...
    Testing query chr5_random:324986-2917264 ...
    Testing query chr21_random:5399136-5748620 ...
    Testing query chr22:2778077-4812793 ...
    Testing query chr10:4969555-6126688 ...
    Testing query chr18:1713300-5060476 ...
    Testing query chr13_random:3333348-5290509 ...
    Testing query chr11_random:4081564-5917103 ...
    Testing query chr4_random:5054748-8642850 ...
    Testing query chr1:2326146-4227874 ...
    Testing query chr18:1537257-7925976 ...
    Testing query chr22_random:8252153-8805544 ...
    Testing query chr3_random:1198809-9011283 ...
    Testing query chr17_random:6967406-8885184 ...
    Testing query chr13:1386877-2947412 ...
    Testing query chrM:6757870-7928951 ...
    Testing query chr21:4074861-7649457 ...
    Testing query chrX_random:1019101-6500619 ...
    Testing query chrX:1825987-5504513 ...
    Testing query chr21_random:3186073-5713305 ...
    Testing query chr4:6259611-8028235 ...
    Testing query chr4:1743818-8599191 ...
    Testing query chr17:1858282-6524491 ...
    Testing query chr15_random:4438074-7157093 ...
    Testing query chr3_random:397131-735889 ...
    Testing query chr8:6928096-9944821 ...
    Testing query chr4_random:1300717-4919221 ...
    Testing query chr5_random:338852-4544685 ...
    Testing query chr7_random:9056136-9688355 ...
    Testing query chr13:2503131-3346435 ...
    Testing query chr15_random:4163332-8152391 ...
    Testing query chr11_random:3309623-7440495 ...
    Testing query chr5_random:9256148-9879716 ...
    Testing query chr17_random:1285404-9731324 ...
    Testing query chr11:8839451-9081378 ...
    Testing query chr13:8871343-9845159 ...
    Testing query chr22:4961912-7272246 ...
    Testing query chr7_random:1546612-1704922 ...
    Testing query chr4_random:3988885-5892099 ...
    Testing query chr16:3240803-6856154 ...
    Testing query chr16:217614-7256181 ...
    Testing query chr8_random:9247976-9386452 ...
    Testing query chr3_random:6627763-9791298 ...
    Testing query chr2:2529288-4212123 ...
    Testing query chrX_random:2988973-8007994 ...
    Testing query chr15:7917609-9330719 ...
    Testing query chr11_random:3494062-5554433 ...
    Testing query chr10_random:550231-9169795 ...
    Testing query chrM:2348914-4789264 ...
    Testing query chr10_random:1774094-2022615 ...
    Testing query chrY:1233622-1787356 ...
    Testing query chr16:1423379-2759956 ...
    Testing query chr15_random:2179216-5955676 ...
    Testing query chr13_random:4485355-8258869 ...
    Testing query chr16:1540718-7599890 ...
    Testing query chr16:3470124-5210468 ...
    Testing query chr5_random:2480219-3389498 ...
    Testing query chrX_random:2150354-9183393 ...
    Testing query chr4_random:7326066-8687796 ...
    Testing query chr9_random:778644-7335950 ...
    Testing query chr3_random:117405-711777 ...
    Testing query chr3_random:1627027-5946622 ...
    Testing query chr14:1896619-3058485 ...
    Testing query chr4:361451-8469991 ...
    Testing query chr13:8016007-9409673 ...
    Testing query chr15_random:4902505-9345392 ...
    Testing query chr11_random:7321862-9499733 ...
    Testing query chr4:1033220-5712150 ...
    Testing query chr8:3549734-9090035 ...
    Testing query chrM:5081509-5962772 ...
    Testing query chrX_random:97240-6137606 ...
    Testing query chr8_random:4271059-4291635 ...
    Testing query chrX_random:530035-1682825 ...
    Testing query chr15:2788773-5483281 ...
    Testing query chrX_random:4759178-9377757 ...
    Testing query chrM:3245025-4297984 ...
    Testing query chr19_random:3021529-4576251 ...
    Testing query chr4_random:1397040-5761345 ...
    Testing query chrM:561371-7187972 ...
    Testing query chr22:5413646-8736775 ...
    Testing query chr17_random:1425366-7019792 ...
    Testing query chr3_random:572179-7205526 ...
    Testing query chr5:4328737-9239750 ...
    Testing query chr22:5069432-6659616 ...
    Testing query chr13:48249-7303858 ...
    Testing query chr3:305799-6869287 ...
    Testing query chr21:3873459-5093561 ...
    Testing query chr19:5939843-9027189 ...
    Testing query chr2:5873453-6683127 ...
    Testing query chr22_random:3713598-5598641 ...
    Testing query chr20:179927-8450235 ...
    Testing query chr13_random:8308459-9668938 ...
    Testing query chr11:1199780-7649669 ...
    Testing query chr19:4137076-6447341 ...
    Testing query chrM:78280-8559488 ...
    Testing query chr4:623887-7069138 ...
    Testing query chr16:3039657-4345359 ...
    Testing query chr17:3391405-4744719 ...
    Testing query chr20:2910861-7899348 ...
    Testing query chr19_random:913985-2128081 ...
    Testing query chr22:1426695-8605324 ...
    Testing query chr12:1887213-4358077 ...
    Testing query chrX:5563613-8375913 ...
    Testing query chr7_random:136737-595720 ...
    Testing query chr22:3649338-3715557 ...
    Testing query chr22_random:1857324-2876705 ...
    Testing query chr3_random:1299041-9034999 ...
    Testing query chr15:978485-8350193 ...
    Testing query chr19_random:4068601-6523086 ...
    Testing query chr2:201488-4273604 ...
    Testing query chr19_random:5966187-9871009 ...
    Testing query chrM:1330413-9761840 ...
    Testing query chr7:4263424-8956444 ...
    Testing query chr5:710131-1481160 ...
    Testing query chr22_random:3228001-4696776 ...
    Testing query chr3:64585-1673488 ...
    Testing query chr16:8045346-8459636 ...
    Testing query chr13_random:1741393-4393228 ...
    Testing query chr22_random:2624571-7878001 ...
    Testing query chr20:4312366-7263897 ...
    Testing query chr2_random:792986-9926045 ...
    Testing query chr4:876557-8032416 ...
    Testing query chr7_random:9474728-9775529 ...
    Testing query chrY:196281-2297210 ...
    Testing query chr11_random:1815604-1988691 ...
    Testing query chr17:327462-9941596 ...
    Testing query chr4:1225057-5716342 ...
    Testing query chrX_random:5518830-9291836 ...
    Testing query chr19_random:8850582-9837888 ...
    Testing query chr10_random:906079-4133872 ...
    Testing query chrX:1487717-2363048 ...
    Testing query chrX:315413-7567516 ...
    Testing query chr8_random:6478215-9426080 ...
    Testing query chr20:2999407-4776774 ...
    Testing query chr5_random:1309090-5902755 ...
    Testing query chr4_random:4737388-7952008 ...
    Testing query chr21_random:3092337-5111212 ...
    Testing query chr12:4888197-9051400 ...
    Testing query chr13_random:4483564-5744770 ...
    Testing query chr22_random:54755-6638497 ...
    Testing query chr13_random:5891419-7679795 ...
    Testing query chr12:1730038-8775120 ...
    Testing query chr10:3971454-8725046 ...
    Testing query chr13_random:2420218-3946730 ...
    Testing query chr16_random:6268326-9602951 ...
    Testing query chr15_random:6201359-7624324 ...
    Testing query chr8_random:1897294-5156982 ...
    Testing query chr1:2597385-4514890 ...
    Testing query chrX_random:338730-7953560 ...
    Testing query chr7:5484367-7925032 ...
    Testing query chr5_random:6298235-7470139 ...
    Testing query chr21_random:3834366-4459713 ...
    Testing query chr5:2361767-8905807 ...
    Testing query chrM:3162105-9086123 ...
    Testing query chrX_random:4940689-6482079 ...
    Testing query chr4:4948264-5128137 ...
    Testing query chr3:4207686-7342748 ...
    Testing query chr19_random:2021389-9994958 ...
    Testing query chr18:3680011-9706840 ...
    Testing query chr17_random:5951397-8238603 ...
    Testing query chr15_random:4175461-7481270 ...
    Testing query chr4:498362-9165782 ...
    Testing query chr21:4179687-5159563 ...
    Testing query chr1:5178637-7992880 ...
    Testing query chr15_random:6053128-8149868 ...
    Testing query chr5:4008322-7971530 ...
    Testing query chr19_random:1097409-1939223 ...
    Testing query chr15:7469377-8821183 ...
    Testing query chr11_random:1627957-5387469 ...
    Testing query chr9:5855393-7238773 ...
    Testing query chr22:3055704-4751301 ...
    Testing query chr18_random:2752026-7569770 ...
    Testing query chr6:2659325-3383321 ...
    Testing query chr19_random:6031799-9193165 ...
    Testing query chr10:2867928-7456748 ...
    Testing query chr17:803521-2016747 ...
    Testing query chr11_random:2756837-9309974 ...
    Testing query chr9_random:4932323-6215308 ...
    Testing query chr19_random:1738738-9429398 ...
    Testing query chr4_random:162435-8328176 ...
    Testing query chr17:138893-2694455 ...
    Testing query chrX_random:4137996-9339319 ...
    Testing query chr19:2497402-8914940 ...
    Testing query chr13_random:3513964-5910759 ...
    Testing query chrX:1099583-2639169 ...
    Testing query chr11_random:6266637-8387131 ...
    Testing query chr8_random:3059827-5229064 ...
    Testing query chr6:380960-2560436 ...
    Testing query chr15_random:5618328-6876961 ...
    Testing query chr2_random:3878460-5680854 ...
    Testing query chr8_random:2477614-4148075 ...
    Testing query chr18_random:5415785-8338387 ...
    Testing query chr10_random:8209397-8355863 ...
    Testing query chr11_random:4475489-6604223 ...
    Testing query chr1_random:754948-7226484 ...
    Testing query chr9:2946100-8357028 ...
    Testing query chr15:7199317-8245905 ...
    Testing query chr7_random:7269507-8820498 ...
    Testing query chr16:1621267-2368637 ...
    Testing query chr7_random:2996833-9854987 ...
    Testing query chrM:6484003-6911983 ...
    Testing query chr13:1771424-4738191 ...
    Testing query chr13_random:1828228-4302873 ...
    Testing query chrM:2962858-5957962 ...
    Testing query chr6_random:4242794-9824359 ...
    Testing query chr13:415874-9331256 ...
    Testing query chr8:7417568-9299672 ...
    Testing query chr5_random:6880184-8188312 ...
    Testing query chr10_random:1892176-5188920 ...
    Testing query chr21_random:4076206-6101050 ...
    Testing query chr20:5126731-9990106 ...
    Testing query chr4:3133535-3261569 ...

Gradle suite > Gradle test > htsjdk.samtools.BAMIndexWriterTest.testWriteBinary STANDARD_OUT
    #BAMIndexWriterTest Wrote binary java BAM Index file /tmp/javaBai.7811954401730367047.bai
    #BAMIndexWriterTest Wrote sorted C binary BAM Index file /tmp/cBai.8029143536141324581.bai
    #BAMIndexWriterTest diff /tmp/javaBai.7811954401730367047.bai /tmp/cBai.8029143536141324581.bai

Gradle suite > Gradle test > htsjdk.samtools.BAMIndexWriterTest.testWriteText STANDARD_OUT
    #BAMIndexWriterTest Wrote textual C BAM Index file /tmp/cBai.17735140578389157976.bai.txt
    #BAMIndexWriterTest Wrote binary Java BAM Index file /tmp/javaBai.5714726907828292296java.bai
    #BAMIndexWriterTest diff /tmp/javaBai.5714726907828292296java.bai.txt /tmp/cBai.17735140578389157976.bai.txt

Gradle suite > Gradle test > htsjdk.samtools.util.BinaryCodecTest.readPastEndOfFile STANDARD_OUT
    4ms to write

Gradle suite > Gradle test > htsjdk.samtools.util.BinaryCodecTest.timeTest STANDARD_OUT
    4ms to write

Gradle suite > Gradle test > htsjdk.samtools.util.BlockCompressedInputStreamTest.testCustomInflater SKIPPED

Gradle suite > Gradle test > htsjdk.samtools.util.BlockCompressedOutputStreamTest.testBasic STANDARD_OUT
    Creating file /tmp/BCOST.16545528615624691735.gz

Gradle suite > Gradle test > htsjdk.samtools.util.BlockCompressedOutputStreamTest.testCustomDeflater STANDARD_OUT
    Creating file /tmp/testCustomDeflater.11827107573483708252.gz

Gradle suite > Gradle test > htsjdk.samtools.util.BlockCompressedOutputStreamTest.testOverflow STANDARD_OUT
    Creating file /tmp/BCOST.16878038951208566634.gz

Gradle suite > Gradle test > htsjdk.samtools.CRAMSliceMD5Test.testExceptionWhileReadingWithWrongReference STANDARD_ERROR
    ERROR	2021-04-21 14:08:15	Slice	Reference MD5 mismatch for slice 0:1-31, .aAbBcCdDgGhHkKmMnNrRsStTvVwWyY

Gradle suite > Gradle test > htsjdk.samtools.util.CoordSpanInputSteamTest.test_3_ranges_byte_single_read STANDARD_ERROR
    Adding chunk: 0 - 100
    Adding chunk: 10 - 20
    Adding chunk: 100 - 200
    Adding chunk: 1048575 - 1048576

Gradle suite > Gradle test > htsjdk.samtools.util.CoordSpanInputSteamTest.test_first_3_bytes STANDARD_ERROR
    Adding chunk: 0 - 1
    Adding chunk: 1 - 2
    Adding chunk: 2 - 3

Gradle suite > Gradle test > htsjdk.samtools.util.CoordSpanInputSteamTest.test_range_read STANDARD_ERROR
    Adding chunk: 0 - 100
    Adding chunk: 10 - 20
    Adding chunk: 100 - 200
    Adding chunk: 1048575 - 1048576
    Adding chunk: 0 - 100
    Adding chunk: 10 - 20
    Adding chunk: 100 - 200
    Adding chunk: 1048575 - 1048576

Gradle suite > Gradle test > htsjdk.samtools.util.DiskBackedQueueTest STANDARD_ERROR
    Resetting tmpdir

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.samtools.util.DiskBackedQueueTest.testPositive[2](no ram records, 10, 0) STANDARD_ERROR
    Could not delete file tmp
    Could not delete file pbuilder2
    Could not delete file DiskBackedQueueTest
    Could not delete file diskbackedqueue.7365309340221330505.tmp

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.samtools.util.DiskBackedQueueTest.testPositive[5](greater than threshold, 550, 100) STANDARD_ERROR
    Could not delete file tmp
    Could not delete file pbuilder2
    Could not delete file DiskBackedQueueTest
    Could not delete file diskbackedqueue.5948670887694821084.tmp

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.samtools.util.DiskBackedQueueTest.testPositive[6](threshold multiple, 600, 100) STANDARD_ERROR
    Could not delete file tmp
    Could not delete file pbuilder2
    Could not delete file DiskBackedQueueTest
    Could not delete file diskbackedqueue.4244515280835066046.tmp

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.samtools.util.DiskBackedQueueTest.testPositive[7](threshold multiple plus one, 101, 100) STANDARD_ERROR
    Could not delete file tmp
    Could not delete file pbuilder2
    Could not delete file DiskBackedQueueTest
    Could not delete file diskbackedqueue.2304895065706227280.tmp

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.samtools.util.DiskBackedQueueTest.testReadOnlyQueueJustBeforeReadingFromDisk STANDARD_ERROR
    Could not delete file tmp
    Could not delete file pbuilder2
    Could not delete file DiskBackedQueueTest
    Could not delete file diskbackedqueue.12595663863019775384.tmp

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.samtools.DownsamplingIteratorTests.testBasicFunction STANDARD_ERROR
    Could not delete file tmp
    Could not delete file pbuilder2
    Could not delete file DiskBackedQueueTest
    Could not delete file diskbackedqueue.367109786807828087.tmp

Gradle suite > Gradle test > htsjdk.samtools.util.IntervalTreeTest.performanceTest STANDARD_OUT
    Time to construct a tree with 50000 nodes: 38 milliseconds
    Queried for the same 100-length mapping 179010468 times in 10 seconds.

Gradle suite > Gradle test > htsjdk.samtools.filter.JavascriptSamRecordFilterTest.testJavascriptFilters[0](unsorted.sam, samFilter01.js, 8) STANDARD_ERROR
    Warning: Nashorn engine is planned to be removed from a future JDK release

Gradle suite > Gradle test > htsjdk.samtools.filter.JavascriptSamRecordFilterTest.testJavascriptFilters[1](unsorted.sam, samFilter02.js, 10) STANDARD_ERROR
    Warning: Nashorn engine is planned to be removed from a future JDK release

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[0](chr3:50911035-50911051	+	.) STANDARD_OUT
    Diagnosing chr3:50911035-50911051	+	. (len 17)
    chr3:50911035-50911051	+	null intersection null (len 17)=>chr3:50936014-50936030	+	.(+) using chain 3 ; pct matched 0.9411765

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[1](chr2:111013693-111013832	+	.) STANDARD_OUT
    Diagnosing chr2:111013693-111013832	+	. (len 140)
    chr2:111013693-111013832	+	null intersection null (len 140)=>null using chain 1
    chr2:111013693-111013832	+	null intersection null (len 140)=>chr2:108482693-108482783	-	.(-) using chain 53 ; pct matched 0.65
    chr2:111013693-111013832	+	null intersection null (len 140)=>chr2:113152284-113152332	+	.(+) using chain 310 ; pct matched 0.35

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[2](chr3:14174511-14175398	+	.) STANDARD_OUT
    Diagnosing chr3:14174511-14175398	+	. (len 888)
    chr3:14174511-14175398	+	null intersection null (len 888)=>chr3:14199509-14200394	+	.(+) using chain 3 ; pct matched 0.9166667

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[3](chr3:50911035-50911051	+	.) STANDARD_OUT
    Diagnosing chr3:50911035-50911051	+	. (len 17)
    chr3:50911035-50911051	+	null intersection null (len 17)=>chr3:50936014-50936030	+	.(+) using chain 3 ; pct matched 0.9411765

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[4](chr6:32071709-32071869	+	.) STANDARD_OUT
    Diagnosing chr6:32071709-32071869	+	. (len 161)
    chr6:32071709-32071869	+	null intersection null (len 161)=>chr6:31963730-31963890	+	.(+) using chain 6 ; pct matched 0.89440995

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[5](chr6:32072183-32072358	+	.) STANDARD_OUT
    Diagnosing chr6:32072183-32072358	+	. (len 176)
    chr6:32072183-32072358	+	null intersection null (len 176)=>chr6:31964204-31964379	+	.(+) using chain 6 ; pct matched 0.90909094

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[6](chr6:32104446-32104606	+	.) STANDARD_OUT
    Diagnosing chr6:32104446-32104606	+	. (len 161)
    chr6:32104446-32104606	+	null intersection null (len 161)=>chr6:31996468-31996628	+	.(+) using chain 6 ; pct matched 0.89440995

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[7](chr6:32104920-32105095	+	.) STANDARD_OUT
    Diagnosing chr6:32104920-32105095	+	. (len 176)
    chr6:32104920-32105095	+	null intersection null (len 176)=>chr6:31996942-31997117	+	.(+) using chain 6 ; pct matched 0.90909094

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[8](chr7:101995561-101995739	+	.) STANDARD_OUT
    Diagnosing chr7:101995561-101995739	+	. (len 179)
    chr7:101995561-101995739	+	null intersection null (len 179)=>chr7:102208488-102208633	+	.(+) using chain 7 ; pct matched 0.8156425

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[9](chr7:142178782-142178825	+	.) STANDARD_OUT
    Diagnosing chr7:142178782-142178825	+	. (len 44)
    chr7:142178782-142178825	+	null intersection null (len 44)=>null using chain 7

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[10](chr7:142179850-142180013	+	.) STANDARD_OUT
    Diagnosing chr7:142179850-142180013	+	. (len 164)
    chr7:142179850-142179857	+	null intersection null (len 8)=>chr7:142479907-142479914	+	.(+) using chain 31548103 ; pct matched 0.048780486
    chr7:142179946-142180009	+	null intersection null (len 64)=>chr7:142480003-142480066	+	.(+) using chain 30171758 ; pct matched 0.3902439
    chr7:142179850-142180013	+	null intersection null (len 164)=>null using chain 7

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[11](chr7:142181067-142181324	+	.) STANDARD_OUT
    Diagnosing chr7:142181067-142181324	+	. (len 258)
    chr7:142181067-142181324	+	null intersection null (len 258)=>null using chain 7

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[12](chr7:142181720-142181860	+	.) STANDARD_OUT
    Diagnosing chr7:142181720-142181860	+	. (len 141)
    chr7:142181720-142181860	+	null intersection null (len 141)=>null using chain 7

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[13](chr7:142182157-142182313	+	.) STANDARD_OUT
    Diagnosing chr7:142182157-142182313	+	. (len 157)
    chr7:142182157-142182313	+	null intersection null (len 157)=>null using chain 7

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[14](chr15:19335778-19336302	+	.) STANDARD_OUT
    Diagnosing chr15:19335778-19336302	+	. (len 525)
    chr15:19335778-19336302	+	null intersection null (len 525)=>chr15:21071199-21071612	+	.(+) using chain 16 ; pct matched 0.7885714
    chr15:19335778-19336302	+	null intersection null (len 525)=>null using chain 110

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[15](chr17:33364376-33364428	+	.) STANDARD_OUT
    Diagnosing chr17:33364376-33364428	+	. (len 53)
    chr17:33364376-33364428	+	null intersection null (len 53)=>chr17:36289992-36290044	+	.(+) using chain 18 ; pct matched 0.3207547
    chr17:33364385-33364428	+	null intersection null (len 44)=>chr17:36342590-36342625	-	.(-) using chain 363 ; pct matched 0.6792453

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[16](chr17:33546162-33546214	+	.) STANDARD_OUT
    Diagnosing chr17:33546162-33546214	+	. (len 53)
    chr17:33546162-33546214	+	null intersection null (len 53)=>null using chain 18
    chr17:33546162-33546214	+	null intersection null (len 53)=>null using chain 1564
    chr17:33546162-33546214	+	null intersection null (len 53)=>chr17:36289992-36290044	-	.(-) using chain 363 ; pct matched 0.3207547
    chr17:33546162-33546214	+	null intersection null (len 53)=>chr17:36342590-36342625	+	.(+) using chain 1571 ; pct matched 0.6792453

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[17](chr17:33706667-33706736	+	.) STANDARD_OUT
    Diagnosing chr17:33706667-33706736	+	. (len 70)
    chr17:33706667-33706736	+	null intersection null (len 70)=>chr17:36453148-36453217	+	.(+) using chain 18 ; pct matched 0.75714284

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[18](chr17:59772721-59772781	+	.) STANDARD_OUT
    Diagnosing chr17:59772721-59772781	+	. (len 61)
    chr17:59772721-59772781	+	null intersection null (len 61)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[19](chr17:59779355-59779421	+	.) STANDARD_OUT
    Diagnosing chr17:59779355-59779421	+	. (len 67)
    chr17:59779355-59779421	+	null intersection null (len 67)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[20](chr17:59781483-59781540	+	.) STANDARD_OUT
    Diagnosing chr17:59781483-59781540	+	. (len 58)
    chr17:59781483-59781540	+	null intersection null (len 58)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[21](chr17:59783488-59783565	+	.) STANDARD_OUT
    Diagnosing chr17:59783488-59783565	+	. (len 78)
    chr17:59783488-59783565	+	null intersection null (len 78)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[22](chr17:59784584-59784615	+	.) STANDARD_OUT
    Diagnosing chr17:59784584-59784615	+	. (len 32)
    chr17:59784584-59784615	+	null intersection null (len 32)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[23](chr17:59786025-59786136	+	.) STANDARD_OUT
    Diagnosing chr17:59786025-59786136	+	. (len 112)
    chr17:59786025-59786136	+	null intersection null (len 112)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[24](chr17:59787203-59787494	+	.) STANDARD_OUT
    Diagnosing chr17:59787203-59787494	+	. (len 292)
    chr17:59787203-59787494	+	null intersection null (len 292)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[25](chr17:59791235-59791514	+	.) STANDARD_OUT
    Diagnosing chr17:59791235-59791514	+	. (len 280)
    chr17:59791235-59791514	+	null intersection null (len 280)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[26](chr17:59794247-59794502	+	.) STANDARD_OUT
    Diagnosing chr17:59794247-59794502	+	. (len 256)
    chr17:59794247-59794502	+	null intersection null (len 256)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[27](chr17:59801884-59802193	+	.) STANDARD_OUT
    Diagnosing chr17:59801884-59802193	+	. (len 310)
    chr17:59801884-59802193	+	null intersection null (len 310)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[28](chr17:59804685-59804982	+	.) STANDARD_OUT
    Diagnosing chr17:59804685-59804982	+	. (len 298)
    chr17:59804685-59804982	+	null intersection null (len 298)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[29](chr17:59817352-59817382	+	.) STANDARD_OUT
    Diagnosing chr17:59817352-59817382	+	. (len 31)
    chr17:59817352-59817382	+	null intersection null (len 31)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[30](chr17:59817465-59817532	+	.) STANDARD_OUT
    Diagnosing chr17:59817465-59817532	+	. (len 68)
    chr17:59817465-59817532	+	null intersection null (len 68)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[31](chr17:59875754-59875812	+	.) STANDARD_OUT
    Diagnosing chr17:59875754-59875812	+	. (len 59)
    chr17:59875754-59875812	+	null intersection null (len 59)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[32](chr17:59875899-59875944	+	.) STANDARD_OUT
    Diagnosing chr17:59875899-59875944	+	. (len 46)
    chr17:59875899-59875944	+	null intersection null (len 46)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[33](chr17:59879183-59879456	+	.) STANDARD_OUT
    Diagnosing chr17:59879183-59879456	+	. (len 274)
    chr17:59879183-59879456	+	null intersection null (len 274)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[34](chr17:59883988-59884276	+	.) STANDARD_OUT
    Diagnosing chr17:59883988-59884276	+	. (len 289)
    chr17:59883988-59884276	+	null intersection null (len 289)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[35](chr17:59887398-59887512	+	.) STANDARD_OUT
    Diagnosing chr17:59887398-59887512	+	. (len 115)
    chr17:59887398-59887512	+	null intersection null (len 115)=>null using chain 18

Gradle suite > Gradle test > htsjdk.samtools.liftover.LiftOverTest.testDiagnosticLiftover[36](chrX:48774611-48775058	+	.) STANDARD_OUT
    Diagnosing chrX:48774611-48775058	+	. (len 448)
    chrX:48774611-48775058	+	null intersection null (len 448)=>null using chain 8

Gradle suite > Gradle test > htsjdk.samtools.MergingSamRecordIteratorTest.testVanillaCoordinateMultiIterator STANDARD_OUT
    read_28833_29006_6945	0	chr21	28833	255	36M	*	0	0	AAGCTGGAGATTACCATACTTAGGCTCATGTAGCCA	?.QC5:&34LA#;K;A'5L*!.;.LJ?)FO?'?D2<	RG:Z:1

    read_28833_29006_6945	0	chr21	30000	255	36M	*	0	0	AAGCTGGAGATTACCATACTTAGGCTCATGTAGCCA	?.QC5:&34LA#;K;A'5L*!.;.LJ?)FO?'?D2<	RG:Z:1

    read_28701_28881_323b	0	chrX	28834	255	36M	*	0	0	GCCCTATCGCCAGATCAATCGTCGCTGTGGAACTAG	$>8BE+:L!M$K(L*MQ>PO8N*8>;;=5IA>B,*O	RG:Z:1

    read_28701_28881_323b	0	chrX	28835	255	36M	*	0	0	GCCCTATCGCCAGATCAATCGTCGCTGTGGAACTAG	$>8BE+:L!M$K(L*MQ>PO8N*8>;;=5IA>B,*O	RG:Z:1

    read_28701_28881_323c	0	chrX	28835	255	36M	*	0	0	CTCAACGTATTCATACAGGCCCTTTTCGAATAGCTG	%$=LPJ?D6&@R!"KJCOI+05?>>J9CJ)'@-O>K	RG:Z:1


Gradle suite > Gradle test > htsjdk.samtools.MergingSamRecordIteratorTest.testVanillaReadOrderMultiIterator STANDARD_OUT
    a
    b
    c
    d
    e

Gradle suite > Gradle test > htsjdk.samtools.MergingSamRecordIteratorTest.testVanillaUnsortedMultiIterator STANDARD_OUT
    b
    d
    e
    c
    a

Gradle suite > Gradle test > htsjdk.samtools.SAMFileWriterFactoryTest.testMakeWriter[0](.bam) STANDARD_ERROR
    Ignoring SAM validation error: ERROR: File /tmp/tmp.13322026046749377680.bam, Error parsing SAM header. @RG line missing SM tag. Line:
    @RG	ID:1

Gradle suite > Gradle test > htsjdk.samtools.SAMFileWriterFactoryTest.testMakeWriterPath[0](.bam) STANDARD_ERROR
    Ignoring SAM validation error: ERROR: File /work/testMakeWriterPath.bam, Error parsing SAM header. @RG line missing SM tag. Line:
    @RG	ID:1

Gradle suite > Gradle test > htsjdk.samtools.SAMFileWriterFactoryTest.testMakeWriterPathAndReferencePath[0](.bam) STANDARD_ERROR
    Ignoring SAM validation error: ERROR: File /work/testMakeWriterPath.bam, Error parsing SAM header. @RG line missing SM tag. Line:
    @RG	ID:1

Gradle suite > Gradle test > htsjdk.samtools.SAMSequenceDictionaryTest.testMergeDictionaries[7](SAMSequenceRecord(name=chr1,length=101,dict_index=0,assembly=null), SAMSequenceRecord(name=chr1,length=0,dict_index=0,assembly=null), false) STANDARD_ERROR
    ERROR	2021-04-21 14:08:48	SAMSequenceDictionary	Cannot merge dictionaries. Found sequence entry for which tags differ: chr1 and tag M5 has the two values: dummy and dummy2.

Gradle suite > Gradle test > htsjdk.samtools.SamReaderFactoryTest.exhaustInputResourcePermutation SKIPPED

Gradle suite > Gradle test > htsjdk.samtools.SamReaderFactoryTest.queryInputResourcePermutation SKIPPED

Gradle suite > Gradle test > htsjdk.samtools.seekablestream.SeekableStreamFactoryTest.testGetStreamFor SKIPPED

Gradle suite > Gradle test > htsjdk.samtools.cram.structure.SliceTests.testFailsMD5Check STANDARD_ERROR
    ERROR	2021-04-21 14:08:50	Slice	Reference MD5 mismatch for slice 0:1-20, CTAGCTCAGAAAAAAAAAA

Gradle suite > Gradle test > htsjdk.samtools.util.SortingCollectionTest STANDARD_ERROR
    Resetting tmpdir

Gradle suite > Gradle test STANDARD_ERROR
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir
    Resetting tmpdir

Gradle suite > Gradle test > htsjdk.variant.variantcontext.filter.JavascriptVariantFilterTest.testJavascriptFilters[0](ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf, variantFilter01.js, 61) STANDARD_ERROR
    Warning: Nashorn engine is planned to be removed from a future JDK release

Gradle suite > Gradle test > htsjdk.variant.variantcontext.filter.JavascriptVariantFilterTest.testJavascriptFilters[1](ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf, variantFilter02.js, 38) STANDARD_ERROR
    Warning: Nashorn engine is planned to be removed from a future JDK release

Gradle suite > Gradle test > htsjdk.variant.variantcontext.writer.VariantContextWriterBuilderUnitTest.demonstrateTestWriteToPipeDoesNotHang_1 STANDARD_ERROR
    java.lang.RuntimeException: oops
    	at htsjdk.variant.variantcontext.writer.VariantContextWriterBuilderUnitTest.lambda$demonstrateTestWriteToPipeDoesNotHang_1$0(VariantContextWriterBuilderUnitTest.java:515)
    	at htsjdk.variant.variantcontext.writer.VariantContextWriterBuilderUnitTest.lambda$testWriteToPipe$2(VariantContextWriterBuilderUnitTest.java:540)
    	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
    	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
    	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    	at java.base/java.lang.Thread.run(Thread.java:834)

Gradle suite > Gradle test > htsjdk.variant.variantcontext.writer.VariantContextWriterBuilderUnitTest.demonstrateTestWriteToPipeDoesNotHang_2 STANDARD_ERROR
    java.lang.RuntimeException: oops
    	at htsjdk.variant.variantcontext.writer.VariantContextWriterBuilderUnitTest.lambda$demonstrateTestWriteToPipeDoesNotHang_2$1(VariantContextWriterBuilderUnitTest.java:521)
    	at htsjdk.variant.variantcontext.writer.VariantContextWriterBuilderUnitTest.lambda$testWriteToPipe$2(VariantContextWriterBuilderUnitTest.java:540)
    	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
    	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
    	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    	at java.base/java.lang.Thread.run(Thread.java:834)
Gradle Test Executor 1 finished executing tests.
Finished generating test XML results (0.286 secs) into: /build/htsjdk-2.18.2+dfsg/build/test-results/test
Generating HTML test report...
Finished generating test html results (0.245 secs) into: /build/htsjdk-2.18.2+dfsg/build/reports/tests/test
:test (Thread[Task worker for ':' Thread 6,5,main]) completed. Took 3 mins 41.667 secs.

BUILD SUCCESSFUL in 3m 51s
5 actionable tasks: 4 executed, 1 up-to-date
make[1]: Verzeichnis „/build/htsjdk-2.18.2+dfsg“ wird verlassen
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary
dh  binary  --buildsystem=gradle --with javahelper,jh_maven_repo_helper
   dh_testroot -O--buildsystem=gradle
   dh_prep -O--buildsystem=gradle
	rm -f -- debian/libhtsjdk-java.substvars debian/libhtsjdk-java-doc.substvars
	rm -fr -- debian/.debhelper/generated/libhtsjdk-java/ debian/libhtsjdk-java/ debian/tmp/ debian/.debhelper/generated/libhtsjdk-java-doc/ debian/libhtsjdk-java-doc/
   dh_auto_install -O--buildsystem=gradle
	install -d /build/htsjdk-2.18.2\+dfsg/debian/tmp
   dh_install -O--buildsystem=gradle
	install -d debian/libhtsjdk-java/usr/share/libhtsjdk-java
	cp --reflink=auto -a ./scripts/explain_sam_flags.py debian/libhtsjdk-java/usr/share/libhtsjdk-java/
	install -d debian/.debhelper/generated/libhtsjdk-java
	install -d debian/.debhelper/generated/libhtsjdk-java-doc
   jh_installjavadoc -O--buildsystem=gradle
	Installing javadoc from build/docs/javadoc into package libhtsjdk-java-doc
	install -d debian/libhtsjdk-java-doc//usr/share/doc/libhtsjdk-java
	cp -r build/docs/javadoc debian/libhtsjdk-java-doc//usr/share/doc/libhtsjdk-java/api/
	cat > debian/libhtsjdk-java-doc.doc-base.javadoc
   dh_installdocs -O--buildsystem=gradle
	install -d debian/libhtsjdk-java/usr/share/doc/libhtsjdk-java
	install -p -m0644 debian/libhtsjdk-java.README.Debian debian/libhtsjdk-java/usr/share/doc/libhtsjdk-java/README.Debian
	install -p -m0644 debian/copyright debian/libhtsjdk-java/usr/share/doc/libhtsjdk-java/copyright
	install -d debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java-doc
	install -p -m0644 debian/copyright debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java-doc/copyright
	install -d debian/libhtsjdk-java-doc/usr/share/doc-base/
	install -p -m0644 debian/libhtsjdk-java-doc.doc-base.javadoc debian/libhtsjdk-java-doc/usr/share/doc-base/libhtsjdk-java-doc
   dh_installchangelogs -O--buildsystem=gradle
	install -p -m0644 debian/changelog debian/libhtsjdk-java/usr/share/doc/libhtsjdk-java/changelog.Debian
	install -p -m0644 debian/changelog debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java-doc/changelog.Debian
   dh_installinit -O--buildsystem=gradle
   dh_installsystemduser -O--buildsystem=gradle
   dh_perl -O--buildsystem=gradle
   dh_link -O--buildsystem=gradle
	rm -f debian/libhtsjdk-java-doc.debhelper.log debian/libhtsjdk-java.debhelper.log
   debian/rules override_jh_installlibs
make[1]: Verzeichnis „/build/htsjdk-2.18.2+dfsg“ wird betreten
jh_installlibs --version-strip='[+]dfsg[.0-9]*'
	install -d debian/libhtsjdk-java/usr/share/java
	install -p -m0644 ./build/libs/htsjdk-2.18.2.jar debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar
	rm -f debian/libhtsjdk-java/usr/share/java/htsjdk.jar
	ln -s htsjdk-2.18.2.jar debian/libhtsjdk-java/usr/share/java/htsjdk.jar
make[1]: Verzeichnis „/build/htsjdk-2.18.2+dfsg“ wird verlassen
   jh_classpath -O--buildsystem=gradle
	jh_manifest -plibhtsjdk-java "--classpath=/usr/share/java/commons-jexl2.jar /usr/share/java/commons-logging.jar /usr/share/java/snappy-java.jar /usr/share/java/commons-compress.jar /usr/share/java/xz.jar /usr/share/java/ngs-java.jar /usr/share/java/libjaxb-api.jar /usr/share/java/jaxb-impl.jar" debian/libhtsjdk-java/usr/share/java/htsjdk.jar
	Updating symlinked /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar (via debian/libhtsjdk-java/usr/share/java/htsjdk.jar)
	Reading manifest from /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar
	Updating manifest in /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar
   jh_manifest -O--buildsystem=gradle
	find debian/libhtsjdk-java  -name '*.jar'
	Found symlink usr/share/java/htsjdk.jar
	Found usr/share/java/htsjdk-2.18.2.jar
	Reading manifest from debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar
	No update of debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar required.
	find debian/libhtsjdk-java-doc  -name '*.jar'
   jh_exec -O--buildsystem=gradle
   jh_depends -O--buildsystem=gradle
Searching /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java for libhtsjdk-java
Searching /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar
Found Jars: /usr/share/java/commons-compress.jar /usr/share/java/commons-jexl2.jar /usr/share/java/commons-logging.jar /usr/share/java/jaxb-impl.jar /usr/share/java/libjaxb-api.jar /usr/share/java/ngs-java.jar /usr/share/java/snappy-java.jar /usr/share/java/xz.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/commons-compress.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/commons-compress.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/commons-jexl2.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/commons-jexl2.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/commons-logging-1.2.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/commons-logging-1.2.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/jaxb-runtime.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/jaxb-runtime.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/libjaxb-api.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/libjaxb-api.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/ngs-java-2.9.3.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/ngs-java-2.9.3.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/snappy-java.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/snappy-java.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java/usr/share/java/xz-1.8.jar
Checking:  /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc/usr/share/java/xz-1.8.jar
Found Debs: libcommons-compress-java libcommons-jexl2-java libcommons-logging-java libjaxb-java libngs-java libsnappy-java libxz-java
Adding substvars: java:Depends=libcommons-compress-java,  libcommons-jexl2-java,  libcommons-logging-java,  libjaxb-java,  libngs-java,  libsnappy-java,  libxz-java java:Recommends=
Searching /build/htsjdk-2.18.2+dfsg/debian/libhtsjdk-java-doc for libhtsjdk-java-doc
Searching
Found Jars:
Found Debs:
Adding substvars: java:Depends= java:Recommends=
   mh_installpoms -O--buildsystem=gradle
	mh_installpom   --package=libhtsjdk-java            --has-package-version --usj-name=htsjdk         debian/htsjdk.pom
	mh_cleanpom   --package=libhtsjdk-java    --has-package-version   --rules=debian/maven.rules      debian/htsjdk.pom debian/.mh/pom.xml debian/.mh/pom.properties
	mv debian/.mh/pom.xml debian/.mh/htsjdk-debian.pom
	install -m 644 -D debian/.mh/htsjdk-2.14.3.pom debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/2.14.3/htsjdk-2.14.3.pom
	install -m 644 -D debian/.mh/htsjdk-debian.pom debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/debian/htsjdk-debian.pom
   mh_linkjars --skip-clean-poms -O--buildsystem=gradle
	mh_linkjar --has-package-version            --package=libhtsjdk-java    --skip-clean-pom debian/htsjdk.pom /usr/share/java/htsjdk.jar
	dh_link   -plibhtsjdk-java /usr/share/javahtsjdk.jar usr/share/maven-repo/com/github/samtools/htsjdk/2.14.3/htsjdk-2.14.3.jar
	rm -f debian/libhtsjdk-java/usr/share/java/htsjdk.jar
	ln -s htsjdk-2.18.2.jar debian/libhtsjdk-java/usr/share/java/htsjdk.jar
	rm -f debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/2.14.3/htsjdk-2.14.3.jar
	ln -s ../../../../../../java/htsjdk.jar debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/2.14.3/htsjdk-2.14.3.jar
	dh_link   -plibhtsjdk-java /usr/share/javahtsjdk.jar usr/share/maven-repo/com/github/samtools/htsjdk/debian/htsjdk-debian.jar
	rm -f debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/2.14.3/htsjdk-2.14.3.jar
	ln -s ../../../../../../java/htsjdk.jar debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/2.14.3/htsjdk-2.14.3.jar
	rm -f debian/libhtsjdk-java/usr/share/java/htsjdk.jar
	ln -s htsjdk-2.18.2.jar debian/libhtsjdk-java/usr/share/java/htsjdk.jar
	rm -f debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/debian/htsjdk-debian.jar
	ln -s ../../../../../../java/htsjdk.jar debian/libhtsjdk-java/usr/share/maven-repo/com/github/samtools/htsjdk/debian/htsjdk-debian.jar
   dh_strip_nondeterminism -O--buildsystem=gradle
	Using 1551477897 as canonical time
	Normalizing debian/libhtsjdk-java/usr/share/java/htsjdk-2.18.2.jar using File::StripNondeterminism::handlers::jar
	Using 1551477897 as canonical time
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalTreeIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalTreeIndex.ChrIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalIndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/IndexToTable.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/IndicesAreEqual.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/ProfileIndexReading.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/CountRecords.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/ExampleBinaryCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/ClassFinder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-bg_glass_75_e6e6e6_1x400.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-icons_2e83ff_256x240.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-bg_highlight-soft_75_cccccc_1x100.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-bg_glass_65_dadada_1x400.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-bg_glass_95_fef1ec_1x400.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-bg_glass_55_fbf9ee_1x400.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-icons_454545_256x240.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-icons_222222_256x240.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-icons_cd0a0a_256x240.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-icons_888888_256x240.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/jquery/images/ui-bg_glass_75_dadada_1x400.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/resources/x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/resources/glass.png using File::StripNondeterminism::handlers::png
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/VCFHeaderReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/SAMSequenceDictionaryExtractor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContext.Validation.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/JexlMissingValueTreatment.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeBuilder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypesContext.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/Allele.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextComparator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/LazyGenotypesContext.LazyData.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/Genotype.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/CommonInfo.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeJEXLContext.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextUtils.JexlVCMatchExp.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeLikelihoods.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContext.Type.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/StructuralVariantType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextBuilder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/FastGenotype.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/LazyGenotypesContext.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContext.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/LazyGenotypesContext.LazyParser.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeLikelihoods.GenotypeLikelihoodsAllelePair.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/FilteringVariantContextIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/FilteringIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/GenotypeQualityFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/HeterozygosityFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/CompoundFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/PassingVariantFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/SnpFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/JavascriptVariantFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/VariantContextFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/VariantContextWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.SiteWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.StaticallyTypeGenotypesWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.GenericInts.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriterManager.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/Options.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.IntArray.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.IntegerTypeGenotypesWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.DPAccessor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.FTGenotypesWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.PLAccessor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.StringOrCharacter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/AsyncVariantContextWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.GenericSiteWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.IGFGenotypesWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.GTWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.GenotypesWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.Accessor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.ADAccessor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.AtomicInt.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilder.OutputType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.Flag.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/SortingVariantContextWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.GQAccessor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2Encoder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.Float.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Codec.SitesInfoForDecoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Codec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Codec.LazyData.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2GenotypeFieldDecoders.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Decoder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCFVersion.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2GenotypeFieldDecoders.Decoder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2LazyGenotypesDecoder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Utils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Type.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/example/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/example/PrintVariantsExample.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/example/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSequenceDictionaryCodec.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSequenceDictionary.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BamFileIoUtils.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMBinaryTagAndValue.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateSetIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/TagValueAndUnsignedArrayFlag.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SBIIndexWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMFileReader.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMRecordCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFormatException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SQTagUtil.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFlag.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMContainerStreamWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/ReservedTagConstants.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMFileWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamInputResource.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexContent.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMFileWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/Chunk.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SQTagUtil.SQBase.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexBuilder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMBAIIndexer.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMBinaryTagAndUnsignedArrayValue.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTextWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFileValidator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexContent.BinList.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateSet.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BrowseableBAMIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTestUtil.SanityCheckFailedException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CustomReaderFactory.ICustomReaderFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.ReaderImplementation.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinList.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSequenceRecord.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMValidationError.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFiles.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/LinearIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.Type.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SortingCollection.Codec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/GZIIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RuntimeIOException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Lazy.LazyInitializer.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CustomGzipOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/HttpUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IterableAdapter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/QualityEncodingDetector.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FastLineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamLocusIterator.RecordAndOffset.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Histogram.Bin.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TrimmingUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Log.LogLevel.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TestUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Log.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractAsyncWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamRecordWithOrdinal.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SolexaQualityConverter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractProgressLogger.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/StringUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LocusComparator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.OverlapIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LocationAware.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FastqQualityFormat.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RuntimeScriptException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.MultiMap.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.FwdIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Locus.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Murmur3.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/EdgingRecordAndOffset.Type.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Histogram.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProcessExecutor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SnappyLoader.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/MergingIterator.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ListMap.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Lazy.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Md5CalculatingInputStream.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamLocusIterator.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AsyncBufferedIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DiskBackedQueue.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TempStreamFactory.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Interval.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DelegatingIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/StringLineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AsciiWriter.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/StopWatch.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalUtil.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/SamLocusAndReferenceIterator.SAMLocusAndReference.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequenceFileWalker.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/package-summary.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaSequenceIndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequenceFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequence.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/BlockCompressedIndexedFastaSequenceFile.html using File::StripNondeterminism::handlers::javadoc
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	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/SamLocusAndReferenceIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaSequenceIndexEntry.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAIEntry.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAIIndex.CRAIIndexException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAMException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAIIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/DefaultBitInputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/BitInputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CramIntArray.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/InputStreamUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/BitOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/ExposedByteArrayOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/DefaultBitOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CountingInputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/ITF8.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CRC32InputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CramInt.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/LTF8.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CRC32OutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/CramVersions.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/MutableInt.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/Version.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/IntHashMap.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/CramVersionPolicies.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/ContentDigests.KNOWN_DIGESTS.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/AbstractBAMFileIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CoordinateSortedPairInfoMap.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/FileTruncatedException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SRAIterator.RecordRangeInfo.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexBuilder.FeatureToBeIndexed.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecord.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/Cigar.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMQueryMultipleIntervalsIteratorFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/AbstractSAMHeaderRecord.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CigarElement.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SecondaryAlignmentSkippingIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileWriterImpl.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DownsamplingIteratorFactory.Strategy.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DiskBasedBAMFileIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMCRAIIndexer.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTagUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReaderFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTestUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DownsamplingIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMIndexMetaData.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.AssertingIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMRecord.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/TextCigarCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReaderFactory.Option.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/TextTagCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecord.SAMTagAndValue.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CigarOperator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DownsamplingIteratorFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.Indexing.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMValidationError.Type.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SRAIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SBIIndex.Header.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateScoringStrategy.ScoringStrategy.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.PrimitiveSamReaderToSamReaderAdapter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/QueryInterval.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/NotPrimarySkippingIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BamIndexValidator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CoordinateSortedPairInfoMap.Codec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/MappingQualityFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SecondaryOrSupplementaryFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/FilteringSamIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/ReadNameFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SecondaryAlignmentFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SolexaNoiseFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/NotPrimaryAlignmentFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SamRecordFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/InsertSizeFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/DuplicateReadFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/TagFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/FailsVendorReadQualityFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/TimeChannel.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/TimeRandomAccessFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/StringHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/Header.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/MetricBase.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/MetricsFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/VersionHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/PrintReadsExample.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/ExampleSamUsage.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AbstractFeatureCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AbstractFeatureReader.ComponentMethods.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.CorruptedIndexFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.InvalidDecodeLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AsciiFeatureCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/FeatureReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AbstractFeatureReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.UnableToCreateCorrectIndexType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/Feature.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/SimpleFeature.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/FeatureCodecHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.UnableToReadIndexFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleIndexedFeatureReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.InvalidHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/DataSeries.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/EncodingParams.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CompressionHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/BlockContentType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/ExternalBlock.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/Block.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/BlockCompressionMethod.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/ReferenceSource.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/ReferenceTracks.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/EnaRefService.GaveUpException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/CRAMReferenceSource.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/EnaRefService.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/ExternalCompressor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/ExternalCompression.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/RANS.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/RANS.ORDER.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/Sam2CramRecordFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramContainerHeaderIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/ContainerFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramNormalizer.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/Cram2SamRecordFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/Utils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CompressionHeaderFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramSpanContainerIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramContainerIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/ContainerParser.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramIO.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/LiftOver.PartialLiftover.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/LiftOver.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/AsyncFastqWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/BasicFastqWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/AsciiLineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/SynchronousLineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/annotation/Strand.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/annotation/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/annotation/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/FullBEDFeature.Exon2.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/FullBEDFeature.Exon.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/SimpleBEDFeature.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/BEDCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/FullBEDFeature.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/BEDCodec.StartOffset.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/BEDFeature.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/AbstractIndex.BlockStats.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/MutableIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexFactory.IndexBalanceApproach.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexFactory.IndexType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/AbstractIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/Index.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/AbstractIndex.IndexType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/DynamicIndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/Block.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/ChrIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/TribbleIndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixIndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixFormat.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/LinearIndexCreator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/LinearIndex.ChrIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/LinearIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalTree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/Interval.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/InflaterFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPClient.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPReply.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableHTTPStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableFTPStreamHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableFTPStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/ISeekableStreamFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableBufferedStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableStreamFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekablePathStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/ReadableSeekableStreamByteChannel.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableMemoryStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/UserPasswordInput.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableFileStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/ByteArraySeekableStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRALazyRecord.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAAccession.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/ReferenceCache.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAUnalignmentIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAIndexedSequenceFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAAlignmentIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/OverclippedReadFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/FilteringIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/IntervalFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/WholeReadClippedFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/AlignedFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/AggregateFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/IntervalKeepPairFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/JavascriptSamRecordFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/AbstractJavascriptFilter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/ContentDigests.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/CRAMEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/EncodingFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/CRAMCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/ByteArrayLenEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ByteArrayStopCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ByteArrayStopEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalLongEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteArrayCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteArrayEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/CanonicalHuffmanIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/BetaIntegerCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/CanonicalHuffmanByteEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/CoreCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/GammaIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/BetaIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/SubexponentialIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanByteHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanIntHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanTree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanCode.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanParamsCalculator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/GolombIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/GolombLongEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/GolombRiceIntegerEncoding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/ReadFeature.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Deletion.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Padding.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Insertion.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Substitution.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Scores.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/ReadBase.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/BaseQualityScore.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Bases.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/InsertBase.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/SoftClip.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/HardClip.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/RefSkip.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/CramRecordReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/MultiRefSliceAlignmentSpanReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/DataSeriesReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/CramRecordWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/DataSeriesWriter.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/QualityScorePreservation.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/BaseCategoryType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/ReadCategory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/PreservationPolicy.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/ReadCategoryType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/BaseCategory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/QualityScoreTreatment.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/lossy/QualityScoreTreatmentType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/Slice.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/AlignmentSpan.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/SubstitutionMatrix.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CramCompressionRecord.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/DataSeriesType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CramCompressionRecord.BAM_FLAGS.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/ReadTag.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/ContainerIO.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/Container.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/EncodingID.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CramHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/CloseableTribbleIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/BinaryFeatureCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/Tribble.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/FeatureCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TabixFeatureReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/NameAwareCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.MalformedFeatureFile.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.TabixReaderFailure.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.FeatureFileDoesntExist.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.InternalCodecException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/CodecLineParsingException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/UnsortedFileException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/URLHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/LittleEndianInputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/ParsingUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/LittleEndianOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/RemoteURLHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/HTTPHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.TIntv.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/MathUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/MathUtils.RunningStat.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.TIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.TPair64.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/FTPHelper.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/popgen/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/popgen/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/popgen/HardyWeinbergCalculation.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.TIndex.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/Positional.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LongLineBufferedReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/PositionalBufferedStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LineIteratorImpl.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.Iterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/AsciiLineReaderIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.TPair64.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LineIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixIteratorLineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalListReferenceSequenceMask.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/PositionalOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LocusImpl.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.Partitioner.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LineReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CloseableIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SequenceUtil.SequenceListsDifferException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/EdgeReadIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/EdgingRecordAndOffset.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.ValuesIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ResourceLimitedMap.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalList.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SortingCollection.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractLocusInfo.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RuntimeEOFException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.DefaultingMap.Factory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractRecordAndOffset.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTreeMap.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FormatUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IOUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DateParser.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CodeUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/WholeGenomeReferenceSequenceMask.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.Node.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ResourceLimitedMapFunctor.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedStreamConstants.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractLocusIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Md5CalculatingOutputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ReferenceSequenceMask.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Locatable.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProcessExecutor.ExitStatusAndOutput.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Tuple.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DateParser.InvalidDateException.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProgressLogger.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RelativeIso8601Date.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedInputStream.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/PeekIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Iso8601Date.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CloserUtil.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/PeekableIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/nio/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/nio/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/nio/DeleteOnExitPathHook.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/DeflaterFactory.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/member-search-index.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/allclasses.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/overview-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/deprecated-list.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/help-doc.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/index-all.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/package-search-index.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/overview-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/constant-values.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/allpackages-index.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/index.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/type-search-index.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/allclasses-index.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/serialized-form.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFConstants.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeader.HEADER_FIELDS.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSimpleHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFStandardHeaderLines.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFFilterHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFCompoundHeaderLine.SupportedHeaderLineType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-summary.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFInfoHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLineCount.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFIDHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFFileReader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-tree.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCF3Codec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFContigHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFIterator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFRecordCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFIteratorBuilder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeader.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFFormatHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFCompoundHeaderLine.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLineType.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/AbstractVCFCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderVersion.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFEncoder.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLineTranslator.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFCodec.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/GeneralUtils.html using File::StripNondeterminism::handlers::javadoc
	Normalizing debian/libhtsjdk-java-doc/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/package-summary.html using File::StripNondeterminism::handlers::javadoc
   dh_compress -O--buildsystem=gradle
	cd debian/libhtsjdk-java
	cd debian/libhtsjdk-java-doc
	chmod a-x usr/share/doc/libhtsjdk-java/changelog.Debian
	gzip -9nf usr/share/doc/libhtsjdk-java/changelog.Debian
	cd '/build/htsjdk-2.18.2+dfsg'
	chmod a-x usr/share/doc/libhtsjdk-java-doc/changelog.Debian
	gzip -9nf usr/share/doc/libhtsjdk-java-doc/changelog.Debian
	cd '/build/htsjdk-2.18.2+dfsg'
   dh_fixperms -O--buildsystem=gradle
	find debian/libhtsjdk-java -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/libhtsjdk-java-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/libhtsjdk-java ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/libhtsjdk-java/usr/share/doc -type f -a -true -a ! -regex 'debian/libhtsjdk-java/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/libhtsjdk-java/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/libhtsjdk-java -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/libhtsjdk-java-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/libhtsjdk-java-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libhtsjdk-java-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/libhtsjdk-java-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/libhtsjdk-java-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
   dh_missing -O--buildsystem=gradle
   dh_installdeb -O--buildsystem=gradle
	install -d debian/libhtsjdk-java/DEBIAN
	install -d debian/libhtsjdk-java-doc/DEBIAN
   dh_gencontrol -O--buildsystem=gradle
	echo misc:Depends= >> debian/libhtsjdk-java.substvars
	echo misc:Pre-Depends= >> debian/libhtsjdk-java.substvars
	dpkg-gencontrol -plibhtsjdk-java -ldebian/changelog -Tdebian/libhtsjdk-java.substvars -Pdebian/libhtsjdk-java -UMulti-Arch
	echo misc:Depends= >> debian/libhtsjdk-java-doc.substvars
	echo misc:Pre-Depends= >> debian/libhtsjdk-java-doc.substvars
	dpkg-gencontrol -plibhtsjdk-java-doc -ldebian/changelog -Tdebian/libhtsjdk-java-doc.substvars -Pdebian/libhtsjdk-java-doc -UMulti-Arch
	chmod 0644 -- debian/libhtsjdk-java/DEBIAN/control
	chown 0:0 -- debian/libhtsjdk-java/DEBIAN/control
	chmod 0644 -- debian/libhtsjdk-java-doc/DEBIAN/control
	chown 0:0 -- debian/libhtsjdk-java-doc/DEBIAN/control
   dh_md5sums -O--buildsystem=gradle
	cd debian/libhtsjdk-java >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	cd debian/libhtsjdk-java-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/libhtsjdk-java/DEBIAN/md5sums
	chown 0:0 -- debian/libhtsjdk-java/DEBIAN/md5sums
	chmod 0644 -- debian/libhtsjdk-java-doc/DEBIAN/md5sums
	chown 0:0 -- debian/libhtsjdk-java-doc/DEBIAN/md5sums
   dh_builddeb -O--buildsystem=gradle
	dpkg-deb --build debian/libhtsjdk-java ..
	dpkg-deb --build debian/libhtsjdk-java-doc ..
dpkg-deb: Paket »libhtsjdk-java« wird in »../libhtsjdk-java_2.18.2+dfsg-2_all.deb« gebaut.
dpkg-deb: Paket »libhtsjdk-java-doc« wird in »../libhtsjdk-java-doc_2.18.2+dfsg-2_all.deb« gebaut.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../htsjdk_2.18.2+dfsg-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: user script /srv/workspace/pbuilder/35623/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/35623/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/35623 and its subdirectories
I: Current time: Wed Apr 21 14:10:35 +14 2021
I: pbuilder-time-stamp: 1618963835