I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 3 15:16:44 -12 2021 I: pbuilder-time-stamp: 1638587804 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dolfin_2018.1.0.post1-16.dsc] I: copying [./dolfin_2018.1.0.post1.orig.tar.gz] I: copying [./dolfin_2018.1.0.post1.orig.tar.gz.asc] I: copying [./dolfin_2018.1.0.post1-16.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 10 20:16:08 2019 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: issuer "dparsons@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dolfin_2018.1.0.post1-16.dsc dpkg-source: info: extracting dolfin in dolfin-2018.1.0.post1 dpkg-source: info: unpacking dolfin_2018.1.0.post1.orig.tar.gz dpkg-source: info: unpacking dolfin_2018.1.0.post1-16.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying conditional-parmetis-in-cholmod.patch dpkg-source: info: applying test_mpi_oversubscribe.patch dpkg-source: info: applying mpi_prefer_mumps_not_superlu_dist.patch dpkg-source: info: applying skip_demo_hyperelasticity_mpi.patch dpkg-source: info: applying unittests_demos_include_dirs.patch dpkg-source: info: applying extra_CXXFLAGS.patch dpkg-source: info: applying PETSc_3.10_SNESTEST_removed.patch dpkg-source: info: applying pytest_fixtures_096217a.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2865/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6993dc2106da45f7952e6a656fc8823a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2865' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.C6lr6Hkf8Y/pbuilderrc_Frnj --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.C6lr6Hkf8Y/b1 --logfile b1/build.log dolfin_2018.1.0.post1-16.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 30 12:10 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2865/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake (>= 3.5), debhelper (>= 12), dh-python, gfortran, chrpath, libboost-chrono-dev, libboost-dev (>= 1.56), libboost-filesystem-dev, libboost-iostreams-dev, libboost-math-dev, libboost-mpi-dev, libboost-program-options-dev, libboost-serialization-dev, libboost-thread-dev, libboost-timer-dev, libeigen3-dev (>= 3.2.90), libhdf5-mpi-dev, libsuitesparse-dev, libscotch-dev, libxml2-dev, mpi-default-dev, petsc-dev (>= 3.7), slepc-dev (>= 3.7), pybind11-dev (>= 2.2.0), python3-setuptools, python3-petsc4py, python3-slepc4py, pkg-config, python3-all-dev, python3-pkg-resources, python3-ffc (>= 2018.1), python3-ffc (<< 2018.2), python3-dijitso (>= 2018.1), python3-dijitso (<< 2018.2), python3-numpy, python3-ply dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake (>= 3.5); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.56); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-mpi-dev; however: Package libboost-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-timer-dev; however: Package libboost-timer-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev (>= 3.2.90); however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libsuitesparse-dev; however: Package libsuitesparse-dev is not installed. pbuilder-satisfydepends-dummy depends on libscotch-dev; however: Package libscotch-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on petsc-dev (>= 3.7); however: Package petsc-dev is not installed. pbuilder-satisfydepends-dummy depends on slepc-dev (>= 3.7); however: Package slepc-dev is not installed. pbuilder-satisfydepends-dummy depends on pybind11-dev (>= 2.2.0); however: Package pybind11-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc (>= 2018.1); however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc (<< 2018.2); however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-dijitso (>= 2018.1); however: Package python3-dijitso is not installed. pbuilder-satisfydepends-dummy depends on python3-dijitso (<< 2018.2); however: Package python3-dijitso is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-ply; however: Package python3-ply is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libblas-dev{a} libblas3{a} libboost-atomic1.67-dev{a} libboost-atomic1.67.0{a} libboost-chrono-dev{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-date-time1.67-dev{a} libboost-date-time1.67.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-iostreams-dev{a} libboost-iostreams1.67-dev{a} libboost-math-dev{a} libboost-math1.67-dev{a} libboost-math1.67.0{a} libboost-mpi-dev{a} libboost-mpi1.67-dev{a} libboost-mpi1.67.0{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost-serialization-dev{a} libboost-serialization1.67-dev{a} libboost-serialization1.67.0{a} libboost-system1.67-dev{a} libboost-thread-dev{a} libboost-thread1.67-dev{a} libboost-thread1.67.0{a} libboost-timer-dev{a} libboost-timer1.67-dev{a} libboost-timer1.67.0{a} libboost1.67-dev{a} libbsd0{a} libbtf1{a} libcamd2{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcroco3{a} libcurl4{a} libcxsparse3{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas2{a} libgssapi-krb5-2{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103{a} libhdf5-openmpi-dev{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libhypre-2.15.1{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libklu1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmpdec2{a} libmumps-5.1.2{a} libmumps-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real-dev{a} libpetsc-real3.10{a} libpetsc-real3.10-dev{a} libpetsc3.10-dev-common{a} libpipeline1{a} libpmix2{a} libprocps7{a} libpsl5{a} libpsm-infinipath1{a} libptscotch-6.0{a} libptscotch-dev{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} librbio2{a} librdmacm1{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.0{a} libscotch-6.0{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.10{a} libslepc-real3.10-dev{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libssl1.1{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libxml2{a} libxml2-dev{a} lsb-base{a} m4{a} man-db{a} mime-support{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} petsc-dev{a} pkg-config{a} po-debconf{a} procps{a} pybind11-dev{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-dijitso{a} python3-distutils{a} python3-ffc{a} python3-fiat{a} python3-lib2to3{a} python3-minimal{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-petsc4py{a} python3-petsc4py-real{a} python3-pkg-resources{a} python3-ply{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-real{a} python3-sympy{a} python3-ufl{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} slepc-dev{a} swig{a} swig3.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl ipython3 javascript-common krb5-locales ksh libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl libpetsc3.10-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python-petsc4py-docs python-slepc4py-docs python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 257 newly installed, 0 to remove and 0 not upgraded. Need to get 209 MB of archives. After unpacking 959 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2+deb10u1 [1381 kB] Get: 9 http://deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2+deb10u1 [1934 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u2 [590 kB] Get: 23 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u2 [1746 kB] Get: 24 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u2 [1751 kB] Get: 27 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libprocps7 i386 2:3.3.15-2 [62.7 kB] Get: 32 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 33 http://deb.debian.org/debian buster/main i386 procps i386 2:3.3.15-2 [259 kB] Get: 34 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 37 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 38 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 45 http://deb.debian.org/debian buster/main i386 openssh-client i386 1:7.9p1-10+deb10u2 [834 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 47 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 48 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 49 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 50 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 51 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 52 http://deb.debian.org/debian buster/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 53 http://deb.debian.org/debian buster/main i386 cmake-data all 3.13.4-1 [1476 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libarchive13 i386 3.3.3-4+deb10u1 [351 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u2 [236 kB] Get: 61 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 63 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4+deb10u1 [358 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libjsoncpp1 i386 1.7.4-3 [85.0 kB] Get: 67 http://deb.debian.org/debian buster/main i386 librhash0 i386 1.3.8-1 [135 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libuv1 i386 1.24.1-1 [116 kB] Get: 69 http://deb.debian.org/debian buster/main i386 cmake i386 3.13.4-1 [3747 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 71 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 74 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 76 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 79 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 80 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 81 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 82 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 83 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 84 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 85 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 86 http://deb.debian.org/debian buster/main i386 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB] Get: 89 http://deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB] Get: 90 http://deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B] Get: 91 http://deb.debian.org/debian buster/main i386 libnl-3-200 i386 3.4.0-1 [65.8 kB] Get: 92 http://deb.debian.org/debian buster/main i386 libnl-route-3-200 i386 3.4.0-1 [170 kB] Get: 93 http://deb.debian.org/debian buster/main i386 libibverbs1 i386 22.1-1 [53.9 kB] Get: 94 http://deb.debian.org/debian buster/main i386 ibverbs-providers i386 22.1-1 [201 kB] Get: 95 http://deb.debian.org/debian buster/main i386 icu-devtools i386 63.1-6+deb10u1 [196 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB] Get: 97 http://deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B] Get: 98 http://deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB] Get: 99 http://deb.debian.org/debian buster/main i386 libsuitesparseconfig5 i386 1:5.4.0+dfsg-1 [21.0 kB] Get: 100 http://deb.debian.org/debian buster/main i386 libamd2 i386 1:5.4.0+dfsg-1 [28.2 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 102 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libarpack2 i386 3.7.0-2 [103 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libblas-dev i386 3.8.0-2 [150 kB] Get: 105 http://deb.debian.org/debian buster/main i386 liblapack-dev i386 3.8.0-2 [2035 kB] Get: 106 http://deb.debian.org/debian buster/main i386 libarpack2-dev i386 3.7.0-2 [117 kB] Get: 107 http://deb.debian.org/debian buster/main i386 libboost1.67-dev i386 1.67.0-13+deb10u1 [8388 kB] Get: 108 http://deb.debian.org/debian buster/main i386 libboost-atomic1.67.0 i386 1.67.0-13+deb10u1 [226 kB] Get: 109 http://deb.debian.org/debian buster/main i386 libboost-atomic1.67-dev i386 1.67.0-13+deb10u1 [225 kB] Get: 110 http://deb.debian.org/debian buster/main i386 libboost-chrono1.67.0 i386 1.67.0-13+deb10u1 [235 kB] Get: 111 http://deb.debian.org/debian buster/main i386 libboost-chrono1.67-dev i386 1.67.0-13+deb10u1 [238 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libboost-chrono-dev i386 1.67.0.1 [4268 B] Get: 113 http://deb.debian.org/debian buster/main i386 libboost-date-time1.67.0 i386 1.67.0-13+deb10u1 [239 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libboost-serialization1.67.0 i386 1.67.0-13+deb10u1 [325 kB] Get: 115 http://deb.debian.org/debian buster/main i386 libboost-serialization1.67-dev i386 1.67.0-13+deb10u1 [367 kB] Get: 116 http://deb.debian.org/debian buster/main i386 libboost-date-time1.67-dev i386 1.67.0-13+deb10u1 [248 kB] Get: 117 http://deb.debian.org/debian buster/main i386 libboost-dev i386 1.67.0.1 [3864 B] Get: 118 http://deb.debian.org/debian buster/main i386 libboost-filesystem1.67.0 i386 1.67.0-13+deb10u1 [265 kB] Get: 119 http://deb.debian.org/debian buster/main i386 libboost-system1.67-dev i386 1.67.0-13+deb10u1 [232 kB] Get: 120 http://deb.debian.org/debian buster/main i386 libboost-filesystem1.67-dev i386 1.67.0-13+deb10u1 [274 kB] Get: 121 http://deb.debian.org/debian buster/main i386 libboost-filesystem-dev i386 1.67.0.1 [3684 B] Get: 122 http://deb.debian.org/debian buster/main i386 libboost-regex1.67.0 i386 1.67.0-13+deb10u1 [508 kB] Get: 123 http://deb.debian.org/debian buster/main i386 libicu-dev i386 63.1-6+deb10u1 [9377 kB] Get: 124 http://deb.debian.org/debian buster/main i386 libboost-regex1.67-dev i386 1.67.0-13+deb10u1 [561 kB] Get: 125 http://deb.debian.org/debian buster/main i386 libboost-iostreams1.67-dev i386 1.67.0-13+deb10u1 [258 kB] Get: 126 http://deb.debian.org/debian buster/main i386 libboost-iostreams-dev i386 1.67.0.1 [3632 B] Get: 127 http://deb.debian.org/debian buster/main i386 libboost-math1.67.0 i386 1.67.0-13+deb10u1 [437 kB] Get: 128 http://deb.debian.org/debian buster/main i386 libboost-math1.67-dev i386 1.67.0-13+deb10u1 [725 kB] Get: 129 http://deb.debian.org/debian buster/main i386 libboost-math-dev i386 1.67.0.1 [3848 B] Get: 130 http://deb.debian.org/debian buster/main i386 libevent-2.1-6 i386 2.1.8-stable-4 [191 kB] Get: 131 http://deb.debian.org/debian buster/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4 [137 kB] Get: 132 http://deb.debian.org/debian buster/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4 [48.1 kB] Get: 133 http://deb.debian.org/debian buster/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6 [178 kB] Get: 134 http://deb.debian.org/debian buster/main i386 librdmacm1 i386 22.1-1 [68.8 kB] Get: 135 http://deb.debian.org/debian buster/main i386 libfabric1 i386 1.6.2-3 [364 kB] Get: 136 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 137 http://deb.debian.org/debian buster/main i386 libnuma1 i386 2.0.12-1 [27.7 kB] Get: 138 http://deb.debian.org/debian buster/main i386 libhwloc5 i386 1.11.12-3 [119 kB] Get: 139 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 140 http://deb.debian.org/debian buster/main i386 ocl-icd-libopencl1 i386 2.2.12-2 [37.2 kB] Get: 141 http://deb.debian.org/debian buster/main i386 libhwloc-plugins i386 1.11.12-3 [17.8 kB] Get: 142 http://deb.debian.org/debian buster/main i386 libpmix2 i386 3.1.2-3 [541 kB] Get: 143 http://deb.debian.org/debian buster/main i386 libopenmpi3 i386 3.1.3-11 [2236 kB] Get: 144 http://deb.debian.org/debian buster/main i386 libboost-mpi1.67.0 i386 1.67.0-13+deb10u1 [274 kB] Get: 145 http://deb.debian.org/debian buster/main i386 openmpi-common all 3.1.3-11 [165 kB] Get: 146 http://deb.debian.org/debian buster/main i386 libnl-3-dev i386 3.4.0-1 [107 kB] Get: 147 http://deb.debian.org/debian buster/main i386 libnl-route-3-dev i386 3.4.0-1 [193 kB] Get: 148 http://deb.debian.org/debian buster/main i386 libibverbs-dev i386 22.1-1 [385 kB] Get: 149 http://deb.debian.org/debian buster/main i386 libnuma-dev i386 2.0.12-1 [40.9 kB] Get: 150 http://deb.debian.org/debian buster/main i386 libltdl-dev i386 2.4.6-9 [164 kB] Get: 151 http://deb.debian.org/debian buster/main i386 libhwloc-dev i386 1.11.12-3 [185 kB] Get: 152 http://deb.debian.org/debian buster/main i386 openmpi-bin i386 3.1.3-11 [200 kB] Get: 153 http://deb.debian.org/debian buster/main i386 libopenmpi-dev i386 3.1.3-11 [963 kB] Get: 154 http://deb.debian.org/debian buster/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 155 http://deb.debian.org/debian buster/main i386 libboost-mpi1.67-dev i386 1.67.0-13+deb10u1 [388 kB] Get: 156 http://deb.debian.org/debian buster/main i386 libboost-mpi-dev i386 1.67.0.1 [3732 B] Get: 157 http://deb.debian.org/debian buster/main i386 libboost-program-options1.67.0 i386 1.67.0-13+deb10u1 [365 kB] Get: 158 http://deb.debian.org/debian buster/main i386 libboost-program-options1.67-dev i386 1.67.0-13+deb10u1 [395 kB] Get: 159 http://deb.debian.org/debian buster/main i386 libboost-program-options-dev i386 1.67.0.1 [3660 B] Get: 160 http://deb.debian.org/debian buster/main i386 libboost-serialization-dev i386 1.67.0.1 [3876 B] Get: 161 http://deb.debian.org/debian buster/main i386 libboost-thread1.67.0 i386 1.67.0-13+deb10u1 [270 kB] Get: 162 http://deb.debian.org/debian buster/main i386 libboost-thread1.67-dev i386 1.67.0-13+deb10u1 [273 kB] Get: 163 http://deb.debian.org/debian buster/main i386 libboost-thread-dev i386 1.67.0.1 [3672 B] Get: 164 http://deb.debian.org/debian buster/main i386 libboost-timer1.67.0 i386 1.67.0-13+deb10u1 [232 kB] Get: 165 http://deb.debian.org/debian buster/main i386 libboost-timer1.67-dev i386 1.67.0-13+deb10u1 [232 kB] Get: 166 http://deb.debian.org/debian buster/main i386 libboost-timer-dev i386 1.67.0.1 [3772 B] Get: 167 http://deb.debian.org/debian buster/main i386 libbtf1 i386 1:5.4.0+dfsg-1 [21.3 kB] Get: 168 http://deb.debian.org/debian buster/main i386 libcamd2 i386 1:5.4.0+dfsg-1 [28.9 kB] Get: 169 http://deb.debian.org/debian buster/main i386 libccolamd2 i386 1:5.4.0+dfsg-1 [30.1 kB] Get: 170 http://deb.debian.org/debian buster/main i386 libcolamd2 i386 1:5.4.0+dfsg-1 [26.0 kB] Get: 171 http://deb.debian.org/debian buster/main i386 libmetis5 i386 5.1.0.dfsg-5+b2 [173 kB] Get: 172 http://deb.debian.org/debian buster/main i386 libcholmod3 i386 1:5.4.0+dfsg-1 [251 kB] Get: 173 http://deb.debian.org/debian buster/main i386 libcombblas1.16.0 i386 1.6.2-3 [282 kB] Get: 174 http://deb.debian.org/debian buster/main i386 libcxsparse3 i386 1:5.4.0+dfsg-1 [61.6 kB] Get: 175 http://deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB] Get: 176 http://deb.debian.org/debian buster/main i386 libeigen3-dev all 3.3.7-1 [850 kB] Get: 177 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] Get: 178 http://deb.debian.org/debian buster/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get: 179 http://deb.debian.org/debian buster/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get: 180 http://deb.debian.org/debian buster/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get: 181 http://deb.debian.org/debian buster/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get: 182 http://deb.debian.org/debian buster/main i386 libfftw3-bin i386 3.3.8-2 [53.5 kB] Get: 183 http://deb.debian.org/debian buster/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get: 184 http://deb.debian.org/debian buster/main i386 libfftw3-mpi3 i386 3.3.8-2 [70.2 kB] Get: 185 http://deb.debian.org/debian buster/main i386 libfftw3-mpi-dev i386 3.3.8-2 [70.9 kB] Get: 186 http://deb.debian.org/debian buster/main i386 libgraphblas2 i386 1:5.4.0+dfsg-1 [2597 kB] Get: 187 http://deb.debian.org/debian buster/main i386 libhdf5-openmpi-103 i386 1.10.4+repack-10 [1348 kB] Get: 188 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 189 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 190 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 191 http://deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 192 http://deb.debian.org/debian buster/main i386 libhdf5-openmpi-dev i386 1.10.4+repack-10 [2645 kB] Get: 193 http://deb.debian.org/debian buster/main i386 libhdf5-mpi-dev i386 1.10.4+repack-10 [27.3 kB] Get: 194 http://deb.debian.org/debian buster/main i386 libsuperlu-dist6 i386 6.1.1+dfsg1-1 [400 kB] Get: 195 http://deb.debian.org/debian buster/main i386 libsuperlu5 i386 5.2.1+dfsg1-4 [160 kB] Get: 196 http://deb.debian.org/debian buster/main i386 libhypre-2.15.1 i386 2.15.1-5 [1699 kB] Get: 197 http://deb.debian.org/debian buster/main i386 libsuperlu-dev i386 5.2.1+dfsg1-4 [18.4 kB] Get: 198 http://deb.debian.org/debian buster/main i386 libhypre-dev i386 2.15.1-5 [171 kB] Get: 199 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 200 http://deb.debian.org/debian buster/main i386 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 201 http://deb.debian.org/debian buster/main i386 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get: 202 http://deb.debian.org/debian buster/main i386 libklu1 i386 1:5.4.0+dfsg-1 [55.8 kB] Get: 203 http://deb.debian.org/debian buster/main i386 libldl2 i386 1:5.4.0+dfsg-1 [21.1 kB] Get: 204 http://deb.debian.org/debian buster/main i386 libmongoose2 i386 1:5.4.0+dfsg-1 [47.0 kB] Get: 205 http://deb.debian.org/debian buster/main i386 mpi-default-bin i386 1.13 [4672 B] Get: 206 http://deb.debian.org/debian buster/main i386 libscalapack-openmpi2.0 i386 2.0.2-7+b2 [1371 kB] Get: 207 http://deb.debian.org/debian buster/main i386 libmumps-5.1.2 i386 5.1.2-4+b2 [1144 kB] Get: 208 http://deb.debian.org/debian buster/main i386 libscalapack-openmpi-dev i386 2.0.2-7+b2 [12.9 kB] Get: 209 http://deb.debian.org/debian buster/main i386 libscalapack-mpi-dev i386 2.0.2-7+b2 [8884 B] Get: 210 http://deb.debian.org/debian buster/main i386 libmumps-dev i386 5.1.2-4+b2 [1090 kB] Get: 211 http://deb.debian.org/debian buster/main i386 libparpack2 i386 3.7.0-2 [97.5 kB] Get: 212 http://deb.debian.org/debian buster/main i386 libparpack2-dev i386 3.7.0-2 [110 kB] Get: 213 http://deb.debian.org/debian buster/main i386 libscotch-6.0 i386 6.0.6-2 [534 kB] Get: 214 http://deb.debian.org/debian buster/main i386 libptscotch-6.0 i386 6.0.6-2 [826 kB] Get: 215 http://deb.debian.org/debian buster/main i386 libumfpack5 i386 1:5.4.0+dfsg-1 [149 kB] Get: 216 http://deb.debian.org/debian buster/main i386 libpetsc-real3.10 i386 3.10.3+dfsg1-5 [4149 kB] Get: 217 http://deb.debian.org/debian buster/main i386 libpetsc3.10-dev-common all 3.10.3+dfsg1-5 [178 kB] Get: 218 http://deb.debian.org/debian buster/main i386 librbio2 i386 1:5.4.0+dfsg-1 [31.9 kB] Get: 219 http://deb.debian.org/debian buster/main i386 libspqr2 i386 1:5.4.0+dfsg-1 [80.5 kB] Get: 220 http://deb.debian.org/debian buster/main i386 libsuitesparse-dev i386 1:5.4.0+dfsg-1 [3308 kB] Get: 221 http://deb.debian.org/debian buster/main i386 libscotch-dev i386 6.0.6-2 [2974 kB] Get: 222 http://deb.debian.org/debian buster/main i386 libptscotch-dev i386 6.0.6-2 [4424 kB] Get: 223 http://deb.debian.org/debian buster/main i386 libssl-dev i386 1.1.1d-0+deb10u3 [1826 kB] Get: 224 http://deb.debian.org/debian buster/main i386 libsuperlu-dist-dev i386 6.1.1+dfsg1-1 [249 kB] Get: 225 http://deb.debian.org/debian buster/main i386 libpetsc-real3.10-dev i386 3.10.3+dfsg1-5 [5626 kB] Get: 226 http://deb.debian.org/debian buster/main i386 libpetsc-real-dev all 3.10.3+dfsg1-5 [24.8 kB] Get: 227 http://deb.debian.org/debian buster/main i386 libpython3.7 i386 3.7.3-2+deb10u2 [1508 kB] Get: 228 http://deb.debian.org/debian buster/main i386 libpython3.7-dev i386 3.7.3-2+deb10u2 [47.7 MB] Get: 229 http://deb.debian.org/debian buster/main i386 libpython3-dev i386 3.7.3-1 [20.2 kB] Get: 230 http://deb.debian.org/debian buster/main i386 libpython3-all-dev i386 3.7.3-1 [1068 B] Get: 231 http://deb.debian.org/debian buster/main i386 libslepc-real3.10 i386 3.10.1+dfsg1-3 [755 kB] Get: 232 http://deb.debian.org/debian buster/main i386 libslepc-real3.10-dev i386 3.10.1+dfsg1-3 [4128 kB] Get: 233 http://deb.debian.org/debian buster/main i386 libxml2-dev i386 2.9.4+dfsg1-7+b3 [843 kB] Get: 234 http://deb.debian.org/debian buster/main i386 petsc-dev all 3.10.3+dfsg1-5 [28.0 kB] Get: 235 http://deb.debian.org/debian buster/main i386 pybind11-dev all 2.2.4-2 [130 kB] Get: 236 http://deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] Get: 237 http://deb.debian.org/debian buster/main i386 python3.7-dev i386 3.7.3-2+deb10u2 [509 kB] Get: 238 http://deb.debian.org/debian buster/main i386 python3-dev i386 3.7.3-1 [1260 B] Get: 239 http://deb.debian.org/debian buster/main i386 python3-all-dev i386 3.7.3-1 [1068 B] Get: 240 http://deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 241 http://deb.debian.org/debian buster/main i386 python3-numpy i386 1:1.16.2-1 [2115 kB] Get: 242 http://deb.debian.org/debian buster/main i386 python3-mpi4py i386 2.0.0-3+b3 [348 kB] Get: 243 http://deb.debian.org/debian buster/main i386 python3-dijitso all 2018.1.1~git1-1 [24.7 kB] Get: 244 http://deb.debian.org/debian buster/main i386 python3-mpmath all 1.1.0-1 [416 kB] Get: 245 http://deb.debian.org/debian buster/main i386 python3-sympy all 1.3-2 [3500 kB] Get: 246 http://deb.debian.org/debian buster/main i386 python3-fiat all 2018.1.0-5 [55.9 kB] Get: 247 http://deb.debian.org/debian buster/main i386 python3-ufl all 2018.1.0-5 [162 kB] Get: 248 http://deb.debian.org/debian buster/main i386 python3-ffc all 2018.1.0-5 [233 kB] Get: 249 http://deb.debian.org/debian buster/main i386 swig3.0 i386 3.0.12-2 [1456 kB] Get: 250 http://deb.debian.org/debian buster/main i386 swig i386 3.0.12-2 [310 kB] Get: 251 http://deb.debian.org/debian buster/main i386 python3-petsc4py-real i386 3.10.1-1 [660 kB] Get: 252 http://deb.debian.org/debian buster/main i386 python3-petsc4py all 3.10.1-1 [9344 B] Get: 253 http://deb.debian.org/debian buster/main i386 python3-ply all 3.11-3 [65.1 kB] Get: 254 http://deb.debian.org/debian buster/main i386 python3-setuptools all 40.8.0-1 [306 kB] Get: 255 http://deb.debian.org/debian buster/main i386 python3-slepc4py-real i386 3.10.0-2 [178 kB] Get: 256 http://deb.debian.org/debian buster/main i386 python3-slepc4py all 3.10.0-2 [5228 B] Get: 257 http://deb.debian.org/debian buster/main i386 slepc-dev all 3.10.1+dfsg1-3 [12.1 kB] Fetched 209 MB in 9s (23.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_i386.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_i386.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../14-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:i386. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_i386.deb ... Unpacking libpython2-stdlib:i386 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20732 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_i386.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libpython3.7-minimal:i386. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u2_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_i386.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:i386 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:i386 (3.7.3-2+deb10u2) ... Setting up libexpat1:i386 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20986 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:i386. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u2_i386.deb ... Unpacking libpython3.7-stdlib:i386 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_i386.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../libpython3-stdlib_3.7.3-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21398 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_i386.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../001-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:i386. Preparing to unpack .../002-libprocps7_2%3a3.3.15-2_i386.deb ... Unpacking libprocps7:i386 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../003-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.15-2_i386.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../007-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../010-libedit2_3.1-20181209-1_i386.deb ... Unpacking libedit2:i386 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../011-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../012-libkrb5support0_1.17-3_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../013-libk5crypto3_1.17-3_i386.deb ... Unpacking libk5crypto3:i386 (1.17-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../014-libkrb5-3_1.17-3_i386.deb ... Unpacking libkrb5-3:i386 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../015-libgssapi-krb5-2_1.17-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../016-openssh-client_1%3a7.9p1-10+deb10u2_i386.deb ... Unpacking openssh-client (1:7.9p1-10+deb10u2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../017-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up libboost-chrono1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:i386 (1.24.1-1) ... Setting up libexpat1-dev:i386 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:i386 (1:1.5.2-2+b1) ... Setting up libboost-program-options-dev:i386 (1.67.0.1) ... Setting up swig3.0 (3.0.12-2) ... Setting up libjpeg62-turbo-dev:i386 (1:1.5.2-2+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libfftw3-quad3:i386 (3.3.8-2) ... Setting up libssl-dev:i386 (1.1.1d-0+deb10u3) ... Setting up autopoint (0.19.8.1-9) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up pkg-config (0.29-6) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libltdl7:i386 (2.4.6-9) ... Setting up libfftw3-double3:i386 (3.3.8-2) ... 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Setting up libboost-system1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libboost-dev:i386 (1.67.0.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libboost-serialization1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:i386 (63.1-6+deb10u1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libsuitesparseconfig5:i386 (1:5.4.0+dfsg-1) ... Setting up chrpath (0.16-2+b1) ... Setting up libsz2:i386 (1.0.2-1) ... Setting up librbio2:i386 (1:5.4.0+dfsg-1) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libreadline7:i386 (7.0-5) ... 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Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-regex1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libhwloc5:i386 (1.11.12-3) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libboost-math-dev:i386 (1.67.0.1) ... Setting up libpython3.7-dev:i386 (3.7.3-2+deb10u2) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up libaec-dev:i386 (1.0.2-1) ... Setting up libldl2:i386 (1:5.4.0+dfsg-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:i386 (1.11.12-3) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libbtf1:i386 (1:5.4.0+dfsg-1) ... Setting up libnuma-dev:i386 (2.0.12-1) ... Setting up libnl-route-3-200:i386 (3.4.0-1) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Setting up libcamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libmongoose2:i386 (1:5.4.0+dfsg-1) ... Setting up libboost-date-time1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libxml2-dev:i386 (2.9.4+dfsg1-7+b3) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up libboost-serialization-dev:i386 (1.67.0.1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libboost-timer1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libnl-3-dev:i386 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libklu1:i386 (1:5.4.0+dfsg-1) ... Setting up libccolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libcurl4:i386 (7.64.0-4+deb10u1) ... Setting up libcxsparse3:i386 (1:5.4.0+dfsg-1) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up libboost-iostreams1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libboost-timer-dev:i386 (1.67.0.1) ... Setting up libboost-filesystem-dev:i386 (1.67.0.1) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libibverbs1:i386 (22.1-1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:i386 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpmix2:i386 (3.1.2-3) ... Setting up ibverbs-providers:i386 (22.1-1) ... Setting up libboost-thread1.67-dev:i386 (1.67.0-13+deb10u1) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libarpack2:i386 (3.7.0-2) ... Setting up libsuperlu5:i386 (5.2.1+dfsg1-4) ... Setting up python3 (3.7.3-1) ... Setting up libboost-iostreams-dev:i386 (1.67.0.1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:i386 (3.4.0-1) ... Setting up libltdl-dev:i386 (2.4.6-9) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython3-all-dev:i386 (3.7.3-1) ... Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up cmake (3.13.4-1) ... Setting up libhwloc-dev:i386 (1.11.12-3) ... Setting up python3-mpmath (1.1.0-1) ... Setting up libsuperlu-dev:i386 (5.2.1+dfsg1-4) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up libcholmod3:i386 (1:5.4.0+dfsg-1) ... Setting up libboost-thread-dev:i386 (1.67.0.1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python3-sympy (1.3-2) ... Setting up librdmacm1:i386 (22.1-1) ... Setting up libspqr2:i386 (1:5.4.0+dfsg-1) ... Setting up libarpack2-dev:i386 (3.7.0-2) ... Setting up python3-setuptools (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-ply (3.11-3) ... Setting up python3-all (3.7.3-1) ... Setting up libibverbs-dev:i386 (22.1-1) ... Setting up libpetsc3.10-dev-common (3.10.3+dfsg1-5) ... Setting up libumfpack5:i386 (1:5.4.0+dfsg-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up python3-fiat (2018.1.0-5) ... Setting up python3-ufl (2018.1.0-5) ... Setting up libsuitesparse-dev:i386 (1:5.4.0+dfsg-1) ... Setting up libopenmpi3:i386 (3.1.3-11) ... Setting up libboost-mpi1.67.0 (1.67.0-13+deb10u1) ... Setting up libfftw3-mpi3:i386 (3.3.8-2) ... Setting up python3-mpi4py (2.0.0-3+b3) ... Setting up libhdf5-openmpi-103:i386 (1.10.4+repack-10) ... Setting up libscotch-6.0 (6.0.6-2) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libparpack2:i386 (3.7.0-2) ... Setting up libcombblas1.16.0:i386 (1.6.2-3) ... Setting up python3-dijitso (2018.1.1~git1-1) ... Setting up python3-ffc (2018.1.0-5) ... update-alternatives: using /usr/lib/python3/dist-packages/ffc/backends/ufc/ufc.h to provide /usr/include/ufc.h (ufc.h) in auto mode Setting up libfftw3-mpi-dev:i386 (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up libptscotch-6.0 (6.0.6-2) ... Setting up libsuperlu-dist6:i386 (6.1.1+dfsg1-1) ... Setting up libopenmpi-dev:i386 (3.1.3-11) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libscalapack-openmpi2.0 (2.0.2-7+b2) ... Setting up libhypre-2.15.1:i386 (2.15.1-5) ... Setting up libsuperlu-dist-dev:i386 (6.1.1+dfsg1-1) ... Setting up libmumps-5.1.2:i386 (5.1.2-4+b2) ... Setting up libscalapack-openmpi-dev (2.0.2-7+b2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev (2.0.2-7+b2) ... Setting up libpetsc-real3.10:i386 (3.10.3+dfsg1-5) ... update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.10.3 to provide /usr/lib/i386-linux-gnu/libpetsc.so.3.10 (libpetsc.so.3.10) in auto mode Setting up libslepc-real3.10 (3.10.1+dfsg1-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.10.1 to provide /usr/lib/i386-linux-gnu/libslepc.so.3.10 (libslepc.so.3.10) in auto mode Setting up libmumps-dev:i386 (5.1.2-4+b2) ... Setting up libscotch-dev (6.0.6-2) ... Setting up libparpack2-dev:i386 (3.7.0-2) ... Setting up python3-petsc4py-real (3.10.1-1) ... update-alternatives: using /usr/lib/python3/dist-packages/petsc4py_real to provide /usr/lib/python3/dist-packages/petsc4py (petsc4py) in auto mode Setting up libboost-mpi1.67-dev (1.67.0-13+deb10u1) ... Setting up libhypre-dev:i386 (2.15.1-5) ... Setting up libptscotch-dev (6.0.6-2) ... Setting up libboost-mpi-dev (1.67.0.1) ... Setting up libhdf5-mpi-dev (1.10.4+repack-10) ... Setting up libpetsc-real3.10-dev:i386 (3.10.3+dfsg1-5) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libpetsc_real.so.3.10.3 to provide /usr/lib/i386-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real to provide /usr/lib/petscdir/3.10 (petsc3.10) in auto mode Setting up libslepc-real3.10-dev (3.10.1+dfsg1-3) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/libslepc_real.so.3.10.1 to provide /usr/lib/i386-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real to provide /usr/lib/slepcdir/3.10 (slepc3.10) in auto mode Setting up python3-petsc4py (3.10.1-1) ... Setting up slepc-dev (3.10.1+dfsg1-3) ... Setting up libpetsc-real-dev (3.10.3+dfsg1-5) ... Setting up python3-slepc4py-real (3.10.0-2) ... update-alternatives: using /usr/lib/python3/dist-packages/slepc4py_real to provide /usr/lib/python3/dist-packages/slepc4py (slepc4py) in auto mode Setting up petsc-dev (3.10.3+dfsg1-5) ... Setting up python3-slepc4py (3.10.0-2) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dolfin-2018.1.0.post1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dolfin dpkg-buildpackage: info: source version 2018.1.0.post1-16 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions rm -rf installation-build build-tests dh_auto_clean make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build py3versions: no X-Python3-Version in control file, using supported versions dh build --buildsystem=cmake --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_configure -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D PETSC_DIR:PATH=/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real -D SLEPC_DIR:PATH=/usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF -D DOLFIN_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_SCOTCH:BOOL=ON -D DOLFIN_ENABLE_DOCS:BOOL=OFF -D DOLFIN_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING="--oversubscribe" -D CMAKE_CXX_FLAGS:STRING="-fpermissive" -D DOLFIN_EXTRA_CXX_FLAGS:STRING="-g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfin-2018.1.0.post1/ cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D PETSC_DIR:PATH=/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real -D SLEPC_DIR:PATH=/usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF -D DOLFIN_ENABLE_HDF5:BOOL=ON -D HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc -D DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_SCOTCH:BOOL=ON -D DOLFIN_ENABLE_DOCS:BOOL=OFF -D DOLFIN_ENABLE_MPI:BOOL=ON -D MPIEXEC_PARAMS:STRING=--oversubscribe -D CMAKE_CXX_FLAGS:STRING=-fpermissive -D "DOLFIN_EXTRA_CXX_FLAGS:STRING=-g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security" /build/dolfin-2018.1.0.post1/ .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so -- Boost version: 1.67.0 -- Found the following Boost libraries: -- timer -- filesystem -- program_options -- iostreams -- chrono -- system -- regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.7.3", minimum required is "3") -- Found UFC: /usr/include (Required is at least version "2018.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.13/Modules/CheckIncludeFile.cmake:70 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.13/Modules/CheckTypeSize.cmake:225 (check_include_file) cmake/modules/FindPETSc.cmake:213 (check_type_size) CMakeLists.txt:301 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.10.3", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- Test SLEPC_TEST_RUNS with shared library linking - Success -- Found SLEPc: TRUE (found suitable version "3.10.1", minimum required is "3.7") -- SUNDIALS could not be found/configured. (missing: SUNDIALS_LIBRARIES SUNDIALS_TEST_RUNS SUNDIALS_INCLUDE_DIRS SUNDIALS_VERSION SUNDIALS_VERSION_OK) (Required is at least version "3") -- Checking for package 'SCOTCH-PT' -- Found SCOTCH (version 6.0.4) -- Performing test SCOTCH_TEST_RUNS -- Performing test SCOTCH_TEST_RUNS - Success -- Found SCOTCH: /usr/lib/i386-linux-gnu/libptscotch.so;/usr/lib/i386-linux-gnu/libscotch.so;/usr/lib/i386-linux-gnu/libptscotcherr.so -- Checking for package 'AMD' -- Looking for sgemm_ -- Looking for sgemm_ - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib/i386-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Performing test CHOLMOD_TEST_RUNS - Success -- Performing test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /usr/lib/i386-linux-gnu/libumfpack.so;/usr/lib/i386-linux-gnu/libamd.so;/usr/lib/i386-linux-gnu/libblas.so;/usr/lib/i386-linux-gnu/libcholmod.so;/usr/lib/i386-linux-gnu/libamd.so;/usr/lib/i386-linux-gnu/libcamd.so;/usr/lib/i386-linux-gnu/libcolamd.so;/usr/lib/i386-linux-gnu/libccolamd.so;/usr/lib/i386-linux-gnu/libsuitesparseconfig.so;/usr/lib/i386-linux-gnu/librt.so;/usr/lib/i386-linux-gnu/liblapack.so;/usr/lib/i386-linux-gnu/libblas.so;/usr/lib/i386-linux-gnu/libblas.so;/usr/lib/gcc/i686-linux-gnu/8/libgfortran.so;/usr/lib/i386-linux-gnu/libsuitesparseconfig.so;/usr/lib/gcc/i686-linux-gnu/8/libgfortran.so -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib/i386-linux-gnu/libblas.so -- Performing test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /usr/lib/i386-linux-gnu/libcholmod.so;/usr/lib/i386-linux-gnu/libamd.so;/usr/lib/i386-linux-gnu/libcamd.so;/usr/lib/i386-linux-gnu/libcolamd.so;/usr/lib/i386-linux-gnu/libccolamd.so;/usr/lib/i386-linux-gnu/libsuitesparseconfig.so;/usr/lib/i386-linux-gnu/librt.so;/usr/lib/i386-linux-gnu/liblapack.so;/usr/lib/i386-linux-gnu/libblas.so;/usr/lib/i386-linux-gnu/libblas.so;/usr/lib/gcc/i686-linux-gnu/8/libgfortran.so -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/i386-linux-gnu/libsz.so;/usr/lib/i386-linux-gnu/libz.so;/usr/lib/i386-linux-gnu/libdl.so;/usr/lib/i386-linux-gnu/libm.so (found version "1.10.4") found components: C -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * SCOTCH, Programs and libraries for graph, mesh and hypergraph partitioning, Enables parallel graph partitioning * UMFPACK, Sparse LU factorization library, * BLAS, Basic Linear Algebra Subprograms, * Threads * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2018.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. -- The following OPTIONAL packages have not been found: * SUNDIALS (required version >= 3), SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers, Provides robust time integrators and nonlinear solvers that can easily be incorporated into existing simulation codes. -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- extract written to /build/dolfin-2018.1.0.post1/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/auto-adaptive-poisson/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/biharmonic/cpp/Biharmonic.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/biharmonic/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/built-in-meshes/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/eigenvalue/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/hyperelasticity/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/mixed-poisson/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/nonmatching-interpolation/cpp/P1.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/nonmatching-interpolation/cpp/P3.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/nonmatching-interpolation/cpp/main.cpp extract written to /build/dolfin-2018.1.0.post1/demo/documented/poisson/cpp/Poisson.ufl extract written to /build/dolfin-2018.1.0.post1/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PETSC_DIR SLEPC_DIR -- Build files have been written to: /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j18 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin/ale /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= Scanning dependencies of target compile_ale_forms make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 0%] Compiling form Poisson2D.ufl [ 0%] Compiling form Poisson1D.ufl [ 0%] Compiling form Poisson3D.ufl cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/dolfin/ale/Poisson1D.ufl cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/dolfin/ale/Poisson2D.ufl cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/dolfin/ale/Poisson3D.ufl make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 0%] Built target compile_ale_forms make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= Scanning dependencies of target dolfin make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/adapt.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/adaptivesolve.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/ale/ALE.cpp [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/ErrorControl.cpp cd 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/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem 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/usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/MPI.cpp cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/SubSystemsManager.cpp cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/Timer.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/timing.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/UniqueIdGenerator.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/utils.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/common/Variable.cpp [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 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-DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/assemble_local.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/AssemblerBase.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/Assembler.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DirichletBC.cpp [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DiscreteOperators.cpp [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DofMapBuilder.cpp [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/DofMap.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/Equation.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/fem_utils.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/FiniteElement.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/Form.cpp [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LinearTimeDependentProblem.cpp [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LinearVariationalProblem.cpp [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem 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-I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LocalAssembler.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/LocalSolver.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshAssembler.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshDirichletBC.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshDofMap.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/MultiMeshForm.cpp [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/NonlinearVariationalProblem.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/NonlinearVariationalSolver.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/PointSource.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/PETScDMCollection.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/solve.cpp [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/SparsityPatternBuilder.cpp [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/SystemAssembler.cpp [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/fem/UFC.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/assign.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/CoefficientAssigner.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG 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-DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/FunctionAssigner.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/FunctionAXPY.cpp [ 25%] Building CXX object 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/build/dolfin-2018.1.0.post1/dolfin/function/Function.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/FunctionSpace.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/GenericFunction.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/LagrangeInterpolator.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/MultiMeshCoefficientAssigner.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem 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/usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/MultiMeshFunctionSpace.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/MultiMeshSubSpace.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/SpecialFacetFunction.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/function/SpecialFunctions.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/BoxMesh.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/IntervalMesh.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/RectangleMesh.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/SphericalShellMesh.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/UnitDiscMesh.cpp [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/UnitTetrahedronMesh.cpp [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/generation/UnitTriangleMesh.cpp [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/BoundingBoxTree.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/CollisionPredicates.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/ConvexTriangulation.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/GenericBoundingBoxTree.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/GeometryDebugging.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/GeometryPredicates.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/intersect.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/IntersectionConstruction.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/MeshPointIntersection.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/Point.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/predicates.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/geometry/SimplexQuadrature.cpp [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/BoostGraphOrdering.cpp [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/GraphBuilder.cpp [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/GraphColoring.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/ParMETIS.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/SCOTCH.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/graph/ZoltanInterface.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/base64.cpp [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/File.cpp [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd 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dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/HDF5Attribute.cpp [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/HDF5File.cpp [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 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-fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/HDF5Utility.cpp [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 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/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/RAWFile.cpp [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/SVGFile.cpp [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/VTKFile.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/VTKWriter.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/X3DFile.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/X3DOM.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XDMFFile.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLFile.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLFunctionData.cpp [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLMesh.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLParameters.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLTable.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/xmlutils.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XMLVector.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/io/XYZFile.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/Amesos2LUSolver.cpp [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/BelosKrylovSolver.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/BlockMatrix.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/BlockVector.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/CoordinateMatrix.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/DefaultFactory.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenFactory.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenKrylovSolver.cpp [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenLUSolver.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenMatrix.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/EigenVector.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/GenericLinearSolver.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/GenericMatrix.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/Ifpack2Preconditioner.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/IndexMap.cpp [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/KrylovSolver.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/LinearOperator.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/LinearSolver.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/LUSolver.cpp [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/MueluPreconditioner.cpp [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScBaseMatrix.cpp [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScFactory.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScKrylovSolver.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScLinearOperator.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScLUSolver.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScMatrix.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScObject.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScOptions.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScPreconditioner.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/PETScVector.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/SLEPcEigenSolver.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/solve.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/SparsityPattern.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TensorLayout.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/test_nullspace.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TpetraFactory.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TpetraMatrix.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TpetraVector.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/TrilinosParameters.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/la/VectorSpaceBasis.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem 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/usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/log.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/Logger.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/LogManager.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/LogStream.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/log/Progress.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem 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/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/math/basic.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/math/Lagrange.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/math/Legendre.cpp [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/BoundaryComputation.cpp [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/BoundaryMesh.cpp [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Cell.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/CellType.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/DistributedMeshTools.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/DynamicMeshEditor.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Edge.cpp [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Face.cpp [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat 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-fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Facet.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 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/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/IntervalCell.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/LocalMeshData.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshColoring.cpp [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshConnectivity.cpp [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/Mesh.cpp [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshData.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshDomains.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshEditor.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 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-DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshFunction.cpp [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshGeometry.cpp [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshHierarchy.cpp [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshOrdering.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c 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CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshQuality.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat 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/usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MeshTransformation.cpp [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/MultiMesh.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/PeriodicBoundaryComputation.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem 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-I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/QuadrilateralCell.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/SubDomain.cpp [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/SubMesh.cpp [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/TetrahedronCell.cpp [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/TopologyComputation.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/mesh/TriangleCell.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c 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-fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/multistage/PointIntegralSolver.cpp [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/multistage/RKSolver.cpp [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 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/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/nls/PETScSNESSolver.cpp [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/nls/PETScTAOSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/nls/TAOLinearBoundSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /build/dolfin-2018.1.0.post1/dolfin/parameter/GlobalParameters.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ddolfin_EXPORTS -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem 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CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_filesystem.so /usr/lib/i386-linux-gnu/libboost_program_options.so /usr/lib/i386-linux-gnu/libboost_iostreams.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/i386-linux-gnu/libumfpack.so /usr/lib/i386-linux-gnu/libamd.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/libcholmod.so /usr/lib/i386-linux-gnu/libamd.so /usr/lib/i386-linux-gnu/libcamd.so /usr/lib/i386-linux-gnu/libcolamd.so 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/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2018.1.0 libdolfin.so.2018.1 libdolfin.so make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [100%] Built target dolfin make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions case " hurd-i386 m68k sh4 " in \ *\ i386\ *) echo "ALL tests have been disabled on i386";; \ *) set -e; \ cp -ra obj-i686-linux-gnu installation-build; \ cd obj-i686-linux-gnu; \ make -j18 unittests; \ make -j18 demos; \ case " i386 mips64el ppc64el " in \ *\ i386\ *) IGNORE_MPI_TESTS="demo_hyperelasticity_mpi demo_elastodynamics_mpi demo_cahn-hilliard_mpi demo_navier-stokes_mpi demo_elasticity_mpi ";; \ *) IGNORE_MPI_TESTS="demo_hyperelasticity_mpi demo_elastodynamics_mpi ";; \ esac; \ echo "set(CTEST_CUSTOM_TESTS_IGNORE ${IGNORE_MPI_TESTS} )" >> CTestCustom.cmake; \ echo "Run C++ unit tests (serial)"; \ LD_LIBRARY_PATH=/build/dolfin-2018.1.0.post1//obj-i686-linux-gnu/dolfin:${LD_LIBRARY_PATH} ctest --output-on-failure -R unittests; \ echo "Run C++ regressions tests (serial)"; \ LD_LIBRARY_PATH=/build/dolfin-2018.1.0.post1//obj-i686-linux-gnu/dolfin:${LD_LIBRARY_PATH} ctest --output-on-failure -j18 -R demo -R serial; \ echo "Run C++ regression tests (MPI)"; \ case " armel armhf i386 hppa m68k powerpc " in \ *\ i386\ *) echo "MPI tests have been disabled on i386";; \ *) LD_LIBRARY_PATH=/build/dolfin-2018.1.0.post1//obj-i686-linux-gnu/dolfin:${LD_LIBRARY_PATH} ctest --output-on-failure -j6 -R demo -R mpi;; \ esac; \ cd ..; \ mv obj-i686-linux-gnu build-tests; \ mv installation-build obj-i686-linux-gnu;; \ esac make[2]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 unittests make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles 69 make -f CMakeFiles/Makefile2 test/unit/cpp/CMakeFiles/unittests.dir/all make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[5]: Entering directory 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-DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -I/build/dolfin-2018.1.0.post1/test/unit/cpp/catch -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o -c /build/dolfin-2018.1.0.post1/test/unit/cpp/common/SubSystemsManager.cpp cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/test/unit/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -I/build/dolfin-2018.1.0.post1/test/unit/cpp/catch -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o -c /build/dolfin-2018.1.0.post1/test/unit/cpp/geometry/ConvexTriangulation.cpp [ 94%] Building CXX object test/unit/cpp/CMakeFiles/unittests.dir/la/LinearOperator.cpp.o [ 94%] Building CXX object test/unit/cpp/CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o [ 95%] Building CXX object test/unit/cpp/CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/test/unit/cpp && 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/build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/documented/built-in-meshes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/built-in-meshes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/DependInfo.cmake --color= make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/documented/cahn-hilliard/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/cahn-hilliard/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/DependInfo.cmake --color= make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build.make demo/documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/depend cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/documented/eigenvalue/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/eigenvalue/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/DependInfo.cmake --color= make -f demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build.make demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 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demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/build.make demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/depend make -f demo/documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/build.make demo/documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/documented/neumann-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/neumann-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/DependInfo.cmake --color= make -f demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/build.make 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'/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' Scanning dependencies of target demo_nonlinear-poisson make -f demo/documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build.make demo/documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build Scanning dependencies of target demo_mixed-poisson Scanning dependencies of target demo_nonmatching-interpolation Scanning dependencies of target demo_singular-poisson Scanning dependencies of target demo_auto-adaptive-poisson Scanning dependencies of target demo_periodic make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build.make demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build Scanning dependencies of target demo_eigenvalue Scanning dependencies of target demo_subdomains make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' 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-I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/hyperelasticity/cpp/main.cpp make -f demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/build.make demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/build Scanning dependencies of target demo_stokes-taylor-hood make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/build.make 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/usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/auto-adaptive-poisson/cpp/main.cpp cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/eigenvalue/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_eigenvalue.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/eigenvalue/cpp/main.cpp make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 71%] Building CXX object demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem 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/usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/cahn-hilliard/cpp/CahnHilliard2D.cpp [ 72%] Building CXX object demo/documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/navier-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_navier-stokes.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/navier-stokes/cpp/main.cpp [ 73%] Building CXX object demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/stokes-iterative/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/stokes-iterative/cpp/main.cpp [ 74%] Building CXX object demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/cahn-hilliard/cpp/CahnHilliard3D.cpp [ 74%] Linking CXX executable demo_built-in-meshes cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/built-in-meshes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_built-in-meshes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -o demo_built-in-meshes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 74%] Built target demo_built-in-meshes make -f demo/undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/build.make demo/undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/advection-diffusion/cpp 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-DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_advection-diffusion.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/advection-diffusion/cpp/main.cpp [ 75%] Linking CXX executable demo_subdomains cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/subdomains/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_subdomains.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro 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/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/ale/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/ale/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/DependInfo.cmake --color= Scanning dependencies of target demo_ale make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build.make demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 75%] Building CXX object demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/ale/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_ale.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/ale/cpp/main.cpp [ 75%] Linking CXX executable demo_neumann-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/neumann-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_neumann-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_neumann-poisson.dir/main.cpp.o -o demo_neumann-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 75%] Linking CXX executable demo_periodic cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/periodic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_periodic.dir/link.txt --verbose=1 [ 75%] Linking CXX executable demo_nonmatching-interpolation cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/nonmatching-interpolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonmatching-interpolation.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_periodic.dir/main.cpp.o -o demo_periodic ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro 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'/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/auto-adaptive-navier-stokes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/auto-adaptive-navier-stokes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/DependInfo.cmake --color= [ 76%] Linking CXX executable demo_nonlinear-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/nonlinear-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonlinear-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -o demo_nonlinear-poisson 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-E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/block-matrix/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/block-matrix/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/DependInfo.cmake --color= make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 76%] Built target demo_nonmatching-interpolation make -f demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build.make demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/conditional/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/conditional/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/DependInfo.cmake --color= Scanning dependencies of target demo_conditional Scanning dependencies of target demo_block-matrix Scanning dependencies of target demo_auto-adaptive-navier-stokes make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/build.make demo/undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/build make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build.make demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build make -f demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build.make demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 76%] Building CXX object demo/undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/block-matrix/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_block-matrix.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/block-matrix/cpp/main.cpp [ 76%] Building CXX object demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o [ 76%] Building CXX object demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/conditional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_conditional.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/conditional/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 76%] Built target demo_poisson make -f demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build.make demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/contact-vi-snes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-snes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/DependInfo.cmake --color= make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 76%] Linking CXX executable demo_singular-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/singular-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_singular-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_singular-poisson.dir/main.cpp.o -o demo_singular-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_contact-vi-snes [ 76%] Built target demo_nonlinear-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build.make demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build [ 76%] Linking CXX executable demo_eigenvalue cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/eigenvalue/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_eigenvalue.dir/link.txt --verbose=1 make -f demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build.make demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/contact-vi-tao/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-tao/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/DependInfo.cmake --color= make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_eigenvalue.dir/main.cpp.o -o demo_eigenvalue ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 76%] Building CXX object demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-snes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/contact-vi-snes/cpp/main.cpp Scanning dependencies of target demo_contact-vi-tao make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build.make demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 77%] Building CXX object demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-tao/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/contact-vi-tao/cpp/main.cpp [ 77%] Linking CXX executable demo_bcs cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/bcs/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_bcs.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_bcs.dir/main.cpp.o -o demo_bcs ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 77%] Built target demo_eigenvalue make -f demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/curl-curl/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/curl-curl/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/DependInfo.cmake --color= [ 77%] Built target demo_singular-poisson make -f demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/dg-advection-diffusion/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-advection-diffusion/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/DependInfo.cmake --color= make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 77%] Built target demo_bcs make -f demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/dg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/DependInfo.cmake --color= Scanning dependencies of target demo_curl-curl Scanning dependencies of target demo_dg-advection-diffusion make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f 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-isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/dg-advection-diffusion/cpp/main.cpp cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/curl-curl/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_curl-curl.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/curl-curl/cpp/main.cpp Scanning dependencies of target demo_dg-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 78%] Building CXX object demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC 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demo_mixed-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 80%] Linking CXX executable demo_hyperelasticity cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/hyperelasticity/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -o demo_hyperelasticity ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 80%] Built target demo_mixed-poisson make -f demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/elasticity/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/elasticity/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/DependInfo.cmake --color= make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 80%] Built target demo_hyperelasticity make -f demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/elastodynamics/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu 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-I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_elasticity.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/elasticity/cpp/main.cpp Scanning dependencies of target demo_elastodynamics make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 81%] Building CXX object demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/elastodynamics/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_elastodynamics.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/elastodynamics/cpp/main.cpp [ 81%] Linking CXX executable demo_biharmonic cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/biharmonic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_biharmonic.dir/main.cpp.o -o demo_biharmonic ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 81%] Built target demo_biharmonic make -f demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/eval/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/eval/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/DependInfo.cmake --color= Scanning dependencies of target demo_eval make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 82%] Building CXX object demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/eval/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_eval.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/eval/cpp/main.cpp [ 82%] Building CXX object demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/documented/cahn-hilliard/cpp/main.cpp [ 83%] Linking CXX executable demo_ale cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/ale/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_ale.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_ale.dir/main.cpp.o -o demo_ale ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 84%] Linking CXX executable demo_stokes-taylor-hood cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/stokes-taylor-hood/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-taylor-hood.dir/link.txt --verbose=1 [ 84%] Built target demo_ale make -f demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build.make demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/extrapolation/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/extrapolation/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/DependInfo.cmake --color= /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o -o demo_stokes-taylor-hood ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_extrapolation make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build.make demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 84%] Building CXX object 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'/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 84%] Built target demo_stokes-taylor-hood make -f demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/functional/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/functional/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/DependInfo.cmake --color= Scanning dependencies of target demo_functional make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make 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/usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 84%] Built target demo_stokes-iterative make -f demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build.make demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/gmg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/gmg-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/DependInfo.cmake --color= Scanning dependencies of target demo_gmg-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f 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/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_gmg-poisson.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/gmg-poisson/cpp/main.cpp [ 84%] Linking CXX executable demo_contact-vi-tao cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-tao/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-tao.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -o demo_contact-vi-tao ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 84%] Built target demo_block-matrix make -f demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build.make demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/lift-drag/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/lift-drag/cpp 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-isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_lift-drag.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/lift-drag/cpp/main.cpp [ 86%] Linking CXX executable demo_conditional cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/conditional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_conditional.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_conditional.dir/main.cpp.o -o demo_conditional ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 86%] Built target demo_contact-vi-tao make -f demo/undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/build.make demo/undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/mesh-quality/cpp 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-D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_mesh-quality.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/mesh-quality/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 86%] Built target demo_conditional make -f demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/meshfunction-refinement/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/meshfunction-refinement/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/DependInfo.cmake --color= [ 86%] Linking CXX executable demo_contact-vi-snes cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/contact-vi-snes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-snes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -o demo_contact-vi-snes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_meshfunction-refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 87%] Building CXX object demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/meshfunction-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/meshfunction-refinement/cpp/main.cpp [ 88%] Linking CXX executable demo_auto-adaptive-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/auto-adaptive-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -o demo_auto-adaptive-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 88%] Built target demo_contact-vi-snes make -f demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-poisson/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/DependInfo.cmake --color= Scanning dependencies of target demo_multimesh-poisson make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f 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/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-poisson/cpp/main.cpp [ 89%] Linking CXX executable demo_dg-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_dg-poisson.dir/main.cpp.o -o demo_dg-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Built target demo_auto-adaptive-poisson make -f demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build.make demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-stokes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-stokes/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/DependInfo.cmake --color= Scanning dependencies of target demo_multimesh-stokes make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build.make demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Building CXX object demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/multimesh-stokes/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Built target demo_dg-poisson make -f demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/nonmatching-projection/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/nonmatching-projection/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/DependInfo.cmake --color= Scanning dependencies of target demo_nonmatching-projection make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Building CXX object demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o cd 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/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/cahn-hilliard/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_cahn-hilliard.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -o demo_cahn-hilliard ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 89%] Linking CXX executable demo_advection-diffusion cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_advection-diffusion.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_advection-diffusion.dir/main.cpp.o -o demo_advection-diffusion ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Built target demo_cahn-hilliard make -f demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build.make demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/parallel-refinement/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/parallel-refinement/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/DependInfo.cmake --color= Scanning dependencies of target demo_parallel-refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build.make demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Building CXX object demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/parallel-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_parallel-refinement.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/parallel-refinement/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 89%] Built target demo_advection-diffusion make -f demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build.make demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/parameters/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu 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-I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_parameters.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/parameters/cpp/main.cpp [ 91%] Linking CXX executable demo_extrapolation cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/extrapolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_extrapolation.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_extrapolation.dir/main.cpp.o -o demo_extrapolation ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_extrapolation make -f demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build.make demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_poisson1D.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D/cpp/main.cpp [ 91%] Linking CXX executable demo_functional cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/functional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_functional.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_functional.dir/main.cpp.o -o demo_functional ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 91%] Linking CXX executable demo_eval cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/eval/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_eval.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_eval.dir/main.cpp.o -o demo_eval ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_functional make -f demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D-in-2D/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/DependInfo.cmake --color= Scanning dependencies of target demo_poisson1D-in-2D make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Building CXX object demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/poisson1D-in-2D/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_eval make -f demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/build.make demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/poisson-disc/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson-disc/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/DependInfo.cmake --color= [ 91%] Linking CXX executable demo_elastodynamics cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/elastodynamics/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elastodynamics.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_elastodynamics.dir/main.cpp.o -o demo_elastodynamics ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so Scanning dependencies of target demo_poisson-disc make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/build.make demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Building CXX object demo/undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson-disc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_poisson-disc.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/poisson-disc/cpp/main.cpp [ 91%] Linking CXX executable demo_navier-stokes cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/documented/navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_navier-stokes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_navier-stokes.dir/main.cpp.o -o demo_navier-stokes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_elastodynamics make -f demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/refinement/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/refinement/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/DependInfo.cmake --color= Scanning dependencies of target demo_refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Building CXX object demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_refinement.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/refinement/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_navier-stokes make -f demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/spatial-coordinates/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/spatial-coordinates/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/DependInfo.cmake --color= Scanning dependencies of target demo_spatial-coordinates make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build [ 91%] Linking CXX executable demo_mesh-quality cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/mesh-quality/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_mesh-quality.dir/link.txt --verbose=1 make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_mesh-quality.dir/main.cpp.o -o demo_mesh-quality ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 91%] Building CXX object demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/spatial-coordinates/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/spatial-coordinates/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_mesh-quality make -f demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/submesh/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/submesh/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/DependInfo.cmake --color= Scanning dependencies of target demo_submesh make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Building CXX object demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/submesh/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_submesh.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/submesh/cpp/main.cpp [ 91%] Linking CXX executable demo_elasticity cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/elasticity/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elasticity.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_elasticity.dir/main.cpp.o -o demo_elasticity ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_elasticity make -f demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/sym-dirichlet-bc/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sym-dirichlet-bc make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Building CXX object demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/sym-dirichlet-bc/cpp/main.cpp [ 91%] Linking CXX executable demo_meshfunction-refinement cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/meshfunction-refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_meshfunction-refinement.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -o demo_meshfunction-refinement ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 91%] Built target demo_meshfunction-refinement make -f demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/time-series/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/time-series/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/DependInfo.cmake --color= Scanning dependencies of target demo_time-series make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 92%] Building CXX object demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/time-series/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_time-series.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/time-series/cpp/main.cpp [ 92%] Linking CXX executable demo_lift-drag cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/lift-drag/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_lift-drag.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_lift-drag.dir/main.cpp.o -o demo_lift-drag ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 92%] Linking CXX executable demo_curl-curl cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/curl-curl/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_curl-curl.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_curl-curl.dir/main.cpp.o -o demo_curl-curl ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 92%] Built target demo_lift-drag make -f demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/depend make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/demo/undocumented/waveguide/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/waveguide/cpp /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/DependInfo.cmake --color= Scanning dependencies of target demo_waveguide make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build make[8]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 92%] Building CXX object demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/main.cpp.o cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/waveguide/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -I/build/dolfin-2018.1.0.post1 -I/build/dolfin-2018.1.0.post1/dolfin -I/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -Wno-comment -fpermissive -O2 -g -DNDEBUG -std=c++11 -o CMakeFiles/demo_waveguide.dir/main.cpp.o -c /build/dolfin-2018.1.0.post1/demo/undocumented/waveguide/cpp/main.cpp make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 92%] Built target demo_curl-curl [ 93%] Linking CXX executable demo_gmg-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/gmg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_gmg-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_gmg-poisson.dir/main.cpp.o -o demo_gmg-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 93%] Built target demo_gmg-poisson [ 93%] Linking CXX executable demo_parameters cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/parameters/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parameters.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_parameters.dir/main.cpp.o -o demo_parameters ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 93%] Built target demo_parameters [ 93%] Linking CXX executable demo_parallel-refinement cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/parallel-refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parallel-refinement.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_parallel-refinement.dir/main.cpp.o -o demo_parallel-refinement ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 93%] Linking CXX executable demo_dg-advection-diffusion cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/dg-advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-advection-diffusion.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -o demo_dg-advection-diffusion ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 93%] Built target demo_parallel-refinement [ 93%] Linking CXX executable demo_multimesh-poisson cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-poisson.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -o demo_multimesh-poisson ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 93%] Built target demo_dg-advection-diffusion make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 93%] Built target demo_multimesh-poisson [ 94%] Linking CXX executable demo_poisson1D-in-2D cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D-in-2D.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -o demo_poisson1D-in-2D ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 95%] Linking CXX executable demo_submesh cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/submesh/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_submesh.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_submesh.dir/main.cpp.o -o demo_submesh ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 95%] Linking CXX executable demo_refinement cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_refinement.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_refinement.dir/main.cpp.o -o demo_refinement ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 95%] Built target demo_submesh [ 95%] Built target demo_poisson1D-in-2D [ 96%] Linking CXX executable demo_nonmatching-projection cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/nonmatching-projection/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonmatching-projection.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o -o demo_nonmatching-projection ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so [ 96%] Linking CXX executable demo_poisson1D cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson1D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson1D.dir/main.cpp.o -o demo_poisson1D ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 96%] Built target demo_refinement make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 96%] Built target demo_nonmatching-projection make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 96%] Built target demo_poisson1D [ 96%] Linking CXX executable demo_time-series cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/time-series/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_time-series.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_time-series.dir/main.cpp.o -o demo_time-series ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 96%] Built target demo_time-series [ 96%] Linking CXX executable demo_spatial-coordinates cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/spatial-coordinates/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_spatial-coordinates.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -o demo_spatial-coordinates ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 96%] Built target demo_spatial-coordinates [ 97%] Linking CXX executable demo_poisson-disc cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/poisson-disc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson-disc.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_poisson-disc.dir/main.cpp.o -o demo_poisson-disc ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 97%] Built target demo_poisson-disc [ 97%] Linking CXX executable demo_sym-dirichlet-bc cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sym-dirichlet-bc.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -o demo_sym-dirichlet-bc ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 97%] Built target demo_sym-dirichlet-bc [ 98%] Linking CXX executable demo_multimesh-stokes cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/multimesh-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-stokes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -o demo_multimesh-stokes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 98%] Built target demo_multimesh-stokes [100%] Linking CXX executable demo_waveguide cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/waveguide/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_waveguide.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_waveguide.dir/main.cpp.o -o demo_waveguide ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [100%] Built target demo_waveguide [100%] Linking CXX executable demo_auto-adaptive-navier-stokes cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-navier-stokes.dir/link.txt --verbose=1 /usr/bin/c++ -Wno-comment -fpermissive -O2 -g -DNDEBUG -Wl,-z,relro CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -o demo_auto-adaptive-navier-stokes ../../../../dolfin/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/i386-linux-gnu/libsz.so /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libdl.so /usr/lib/i386-linux-gnu/libm.so /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so make[8]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [100%] Built target demo_auto-adaptive-navier-stokes make[7]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles 0 make[6]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/demo' make[5]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' Built target demos make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' Run C++ unit tests (serial) Test project /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu Start 1: unittests 1/1 Test #1: unittests ........................ Passed 1.99 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 2.00 sec Run C++ regressions tests (serial) Test project /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu Start 3: demo_auto-adaptive-poisson_serial Start 5: demo_bcs_serial Start 7: demo_biharmonic_serial Start 9: demo_built-in-meshes_serial Start 10: demo_cahn-hilliard_serial Start 12: demo_eigenvalue_serial Start 13: demo_hyperelasticity_serial Start 15: demo_mixed-poisson_serial Start 16: demo_navier-stokes_serial Start 18: demo_neumann-poisson_serial Start 20: demo_nonlinear-poisson_serial Start 22: demo_nonmatching-interpolation_serial Start 24: demo_periodic_serial Start 26: demo_poisson_serial Start 28: demo_singular-poisson_serial Start 30: demo_stokes-iterative_serial Start 32: demo_stokes-taylor-hood_serial Start 34: demo_subdomains_serial 1/51 Test #9: demo_built-in-meshes_serial ............... Passed 0.57 sec Start 36: demo_advection-diffusion_serial 2/51 Test #20: demo_nonlinear-poisson_serial ............. Passed 0.57 sec Start 38: demo_ale_serial 3/51 Test #24: demo_periodic_serial ...................... Passed 0.57 sec Start 40: demo_auto-adaptive-navier-stokes_serial 4/51 Test #26: demo_poisson_serial ....................... Passed 0.57 sec Start 42: demo_block-matrix_serial 5/51 Test #18: demo_neumann-poisson_serial ............... Passed 0.61 sec Start 44: demo_conditional_serial 6/51 Test #22: demo_nonmatching-interpolation_serial ..... Passed 0.60 sec Start 46: demo_contact-vi-snes_serial 7/51 Test #34: demo_subdomains_serial .................... Passed 0.62 sec Start 48: demo_contact-vi-tao_serial 8/51 Test #15: demo_mixed-poisson_serial ................. Passed 0.65 sec Start 50: demo_curl-curl_serial 9/51 Test #7: demo_biharmonic_serial .................... Passed 0.67 sec Start 52: demo_dg-advection-diffusion_serial 10/51 Test #28: demo_singular-poisson_serial .............. Passed 0.79 sec Start 54: demo_dg-poisson_serial 11/51 Test #12: demo_eigenvalue_serial .................... Passed 0.94 sec Start 55: demo_elasticity_serial 12/51 Test #5: demo_bcs_serial ........................... Passed 1.03 sec Start 56: demo_elastodynamics_serial 13/51 Test #38: demo_ale_serial ........................... Passed 0.53 sec Start 58: demo_eval_serial 14/51 Test #42: demo_block-matrix_serial .................. Passed 0.54 sec Start 60: demo_extrapolation_serial 15/51 Test #48: demo_contact-vi-tao_serial ................ Passed 0.71 sec Start 62: demo_functional_serial 16/51 Test #54: demo_dg-poisson_serial .................... Passed 0.55 sec Start 64: demo_gmg-poisson_serial 17/51 Test #44: demo_conditional_serial ................... Passed 0.79 sec Start 66: demo_lift-drag_serial 18/51 Test #32: demo_stokes-taylor-hood_serial ............ Passed 1.56 sec Start 68: demo_mesh-quality_serial 19/51 Test #46: demo_contact-vi-snes_serial ............... Passed 1.01 sec Start 70: demo_meshfunction-refinement_serial 20/51 Test #60: demo_extrapolation_serial ................. Passed 0.55 sec Start 72: demo_multimesh-poisson_serial 21/51 Test #52: demo_dg-advection-diffusion_serial ........ Passed 1.04 sec Start 74: demo_multimesh-stokes_serial 22/51 Test #62: demo_functional_serial .................... Passed 0.55 sec Start 76: demo_nonmatching-projection_serial 23/51 Test #64: demo_gmg-poisson_serial ................... Passed 0.60 sec Start 78: demo_parallel-refinement_serial 24/51 Test #66: demo_lift-drag_serial ..................... Passed 0.56 sec Start 80: demo_parameters_serial 25/51 Test #68: demo_mesh-quality_serial .................. Passed 0.56 sec Start 82: demo_poisson1D_serial 26/51 Test #70: demo_meshfunction-refinement_serial ....... Passed 0.53 sec Start 84: demo_poisson1D-in-2D_serial 27/51 Test #36: demo_advection-diffusion_serial ........... Passed 1.59 sec Start 86: demo_poisson-disc_serial 28/51 Test #58: demo_eval_serial .......................... Passed 1.18 sec Start 88: demo_refinement_serial 29/51 Test #80: demo_parameters_serial .................... Passed 0.54 sec Start 90: demo_spatial-coordinates_serial 30/51 Test #78: demo_parallel-refinement_serial ........... Passed 0.58 sec Start 92: demo_submesh_serial 31/51 Test #74: demo_multimesh-stokes_serial .............. Passed 0.92 sec Start 94: demo_sym-dirichlet-bc_serial 32/51 Test #82: demo_poisson1D_serial ..................... Passed 0.53 sec Start 96: demo_time-series_serial 33/51 Test #84: demo_poisson1D-in-2D_serial ............... Passed 0.56 sec Start 98: demo_waveguide_serial 34/51 Test #76: demo_nonmatching-projection_serial ........ Passed 0.95 sec 35/51 Test #88: demo_refinement_serial .................... Passed 0.63 sec 36/51 Test #86: demo_poisson-disc_serial .................. Passed 0.81 sec 37/51 Test #16: demo_navier-stokes_serial ................. Passed 3.10 sec 38/51 Test #92: demo_submesh_serial ....................... Passed 0.58 sec 39/51 Test #90: demo_spatial-coordinates_serial ........... Passed 0.62 sec 40/51 Test #96: demo_time-series_serial ................... Passed 0.58 sec 41/51 Test #98: demo_waveguide_serial ..................... Passed 0.73 sec 42/51 Test #72: demo_multimesh-poisson_serial ............. Passed 2.79 sec 43/51 Test #50: demo_curl-curl_serial ..................... Passed 4.35 sec 44/51 Test #3: demo_auto-adaptive-poisson_serial ......... Passed 5.09 sec 45/51 Test #94: demo_sym-dirichlet-bc_serial .............. Passed 2.72 sec 46/51 Test #55: demo_elasticity_serial .................... Passed 4.55 sec 47/51 Test #40: demo_auto-adaptive-navier-stokes_serial ... Passed 13.67 sec 48/51 Test #56: demo_elastodynamics_serial ................ Passed 15.51 sec 49/51 Test #30: demo_stokes-iterative_serial .............. Passed 27.56 sec 50/51 Test #13: demo_hyperelasticity_serial ............... Passed 72.98 sec 51/51 Test #10: demo_cahn-hilliard_serial ................. Passed 100.05 sec 100% tests passed, 0 tests failed out of 51 Total Test time (real) = 100.06 sec Run C++ regression tests (MPI) MPI tests have been disabled on i386 make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary py3versions: no X-Python3-Version in control file, using supported versions dh binary --buildsystem=cmake --with python3 dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake debian/rules override_dh_auto_install make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install cd obj-i686-linux-gnu && make -j18 install DESTDIR=/build/dolfin-2018.1.0.post1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1 -B/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin/ale /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [ 0%] Built target compile_ale_forms make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' cd /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1 /build/dolfin-2018.1.0.post1/dolfin /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[4]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[4]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' [100%] Built target dolfin make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/bin/dolfin-convert -- Installing: 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/build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/BoxMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/dolfin_generation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/IntervalMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/RectangleMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/SphericalShellMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/UnitCubeMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/UnitDiscMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/UnitIntervalMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/generation/UnitSquareMesh.h -- Installing: 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/build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScOptions.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScPreconditioner.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/PETScVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/Scalar.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/SLEPcEigenSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/solve.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/SparsityPattern.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/SUNDIALSNVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TensorLayout.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/test_nullspace.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TpetraFactory.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TpetraMatrix.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TpetraVector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TrilinosParameters.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/TrilinosPreconditioner.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/Vector.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/la/VectorSpaceBasis.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/dolfin_log.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/Event.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/Logger.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/log/log.h -- 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/build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/PointCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/SubDomain.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/SubMesh.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/mesh/Vertex.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/multistage/RKSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/Parameter.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/parameter/Parameters.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/refine.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/include/dolfin/ts/CVode.h -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/libdolfin.so.2018.1 -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/libdolfin.so -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/obj-i686-linux-gnu' dh_numpy3 for v in python3.7; do \ cd python; \ PATH=/build/dolfin-2018.1.0.post1/debian/tmp/usr/bin:$PATH \ CXXFLAGS="-g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include" \ VERBOSE=1 \ $v setup.py install --root=/build/dolfin-2018.1.0.post1/debian/tmp --install-layout=deb; \ done; running install running build running build_py creating build creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/dolfin copying dolfin/__init__.py -> build/lib.linux-x86_64-3.7/dolfin creating build/lib.linux-x86_64-3.7/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-x86_64-3.7/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-x86_64-3.7/dolfin/common creating build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/function.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-x86_64-3.7/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-x86_64-3.7/dolfin/function creating build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-x86_64-3.7/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-x86_64-3.7/dolfin/fem creating build/lib.linux-x86_64-3.7/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-x86_64-3.7/dolfin/la creating build/lib.linux-x86_64-3.7/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/io creating build/lib.linux-x86_64-3.7/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-x86_64-3.7/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-x86_64-3.7/dolfin/jit creating build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-x86_64-3.7/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-x86_64-3.7/dolfin/mesh creating build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-x86_64-3.7/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-x86_64-3.7/dolfin/multistage creating build/lib.linux-x86_64-3.7/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-x86_64-3.7/dolfin/parameter creating build/lib.linux-x86_64-3.7/dolfin_utils creating build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert creating build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-x86_64-3.7/dolfin_utils/test creating build/lib.linux-x86_64-3.7/fenics copying fenics/__init__.py -> build/lib.linux-x86_64-3.7/fenics running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python3.7 (found version "3.7.3") -- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython3.7m.so -- Performing Test HAS_CPP14_FLAG -- Performing Test HAS_CPP14_FLAG - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;SLEPc' -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- LTO enabled -- Checking for package 'PETSc4Py' -- petsc4py version 3.10.1 found -- Found PETSc4py: /usr/lib/python3/dist-packages/petsc4py/include -- Found MPI4PY: /usr/lib/python3/dist-packages/mpi4py/include -- Configuring done -- Generating done -- Build files have been written to: /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 make[2]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/cmake -S/build/dolfin-2018.1.0.post1/python -B/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/make -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend make[4]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' cd /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/dolfin-2018.1.0.post1/python /build/dolfin-2018.1.0.post1/python /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7 /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/DependInfo.cmake --color= Dependee "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/DependInfo.cmake" is newer than depender "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/depend.internal". Dependee "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles/cpp.dir/depend.internal". Scanning dependencies of target cpp make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/make -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build make[4]: Entering directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' [ 4%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/dolfin.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/dolfin.cpp [ 9%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o [ 14%] Building CXX object CMakeFiles/cpp.dir/src/ale.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/adaptivity.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/adaptivity.cpp /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/ale.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/ale.cpp [ 19%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/parameter.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/parameter.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/src/common.cpp.o /usr/bin/c++ 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-DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/nls.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/nls.cpp [ 90%] Building CXX object CMakeFiles/cpp.dir/src/refinement.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_PYBIND11_MPI4PY -DHAS_PYBIND11_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -D_FILE_OFFSET_BITS=64 -Dcpp_EXPORTS -I/usr/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -isystem /usr/include/python3.7m -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/i386-linux-gnu/openmpi/include -isystem /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -fPIC -fvisibility=hidden -std=c++14 -flto -fno-fat-lto-objects -fvisibility=hidden -std=c++11 -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /build/dolfin-2018.1.0.post1/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library ../lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-i386-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/dolfin-2018.1.0.post1=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/dolfin-2018.1.0.post1/debian/tmp/usr/include -DVERSION_INFO=\"2018.1.0\" -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,cpp.cpython-37m-i386-linux-gnu.so -o ../lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-i386-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu:/usr/lib/i386-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib:/usr/lib/i386-linux-gnu/openmpi/lib -flto /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 /usr/lib/i386-linux-gnu/libboost_timer.so /usr/lib/i386-linux-gnu/libboost_chrono.so /usr/lib/i386-linux-gnu/libboost_system.so /usr/lib/i386-linux-gnu/hdf5/openmpi/libhdf5.so -lsz -lz -ldl -lm /usr/lib/slepcdir/slepc3.10/i386-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.10/i386-linux-gnu-real/lib/libpetsc_real.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so /usr/bin/strip /build/dolfin-2018.1.0.post1/python/build/lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-i386-linux-gnu.so make[4]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' [100%] Built target cpp make[3]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' /usr/bin/cmake -E cmake_progress_start /build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7/CMakeFiles 0 make[2]: Leaving directory '/build/dolfin-2018.1.0.post1/python/build/temp.linux-x86_64-3.7' running install_lib creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3 creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/io copying build/lib.linux-x86_64-3.7/dolfin/io/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/io creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/interpolation.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/projection.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/adaptivesolving.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/multimeshdirichletbc.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/norms.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/formmanipulations.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/solving.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/assembling.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/problem.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/errorcontrolgenerator.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/form.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/dirichletbc.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem copying build/lib.linux-x86_64-3.7/dolfin/fem/solvers.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/common/timer.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/common/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common copying build/lib.linux-x86_64-3.7/dolfin/common/plotting.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/parameter copying build/lib.linux-x86_64-3.7/dolfin/parameter/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/parameter creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/factorize.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/rushlarsenschemes.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/multistagescheme.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage copying build/lib.linux-x86_64-3.7/dolfin/multistage/multistagesolvers.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la copying build/lib.linux-x86_64-3.7/dolfin/la/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la copying build/lib.linux-x86_64-3.7/dolfin/la/solver.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/jit/jit.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/jit/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/jit/pybind11jit.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit copying build/lib.linux-x86_64-3.7/dolfin/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/expression.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/jit.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/function.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/specialfunctions.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/constant.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/argument.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/multimeshfunction.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/multimeshfunctionspace.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/function/functionspace.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function copying build/lib.linux-x86_64-3.7/dolfin/cpp.cpython-37m-i386-linux-gnu.so -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/meshvaluecollection.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/svgtools.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/ufl_util.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/subdomain.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/meshfunction.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh copying build/lib.linux-x86_64-3.7/dolfin/mesh/ale.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/meshconvert.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/abaqus.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-3.7/dolfin_utils/meshconvert/xml_writer.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/skips.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/fixtures.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test copying build/lib.linux-x86_64-3.7/dolfin_utils/test/paths.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test creating /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics copying build/lib.linux-x86_64-3.7/fenics/__init__.py -> /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/interpolation.py to interpolation.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/projection.py to projection.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/norms.py to norms.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/solving.py to solving.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/assembling.py to assembling.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/problem.py to problem.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/form.py to form.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/fem/solvers.py to solvers.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common/timer.py to timer.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/common/plotting.py to plotting.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/parameter/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/factorize.py to factorize.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/la/solver.py to solver.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit/jit.py to jit.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/expression.py to expression.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/jit.py to jit.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/function.py to function.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/constant.py to constant.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/argument.py to argument.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/function/functionspace.py to functionspace.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/svgtools.py to svgtools.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/subdomain.py to subdomain.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin/mesh/ale.py to ale.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/skips.py to skips.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/dolfin_utils/test/paths.py to paths.cpython-37.pyc byte-compiling /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python3/dist-packages/fenics_dolfin-2018.1.0.egg-info Skipping SOURCES.txt running install_scripts chrpath -d /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/python*/dist-packages/dolfin/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/dolfin.pc sed -i "s|-DNDEBUG||g" /build/dolfin-2018.1.0.post1/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/dolfin.pc make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' debian/rules override_dh_install-indep make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions cd python/demo; \ python3 generate-demo-files.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/eigenvalue/demo_eigenvalue.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/neumann-poisson/demo_neumann-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/nonmatching-interpolation/demo_nonmatching-interpolation.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/stokes-iterative/demo_stokes-iterative.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/maxwell-eigenvalues/demo_maxwell-eigenvalues.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/auto-adaptive-poisson/demo_auto-adaptive-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/hyperelasticity/demo_hyperelasticity.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/poisson/demo_poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/built-in-meshes/demo_built-in-meshes.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/singular-poisson/demo_singular-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/nonlinear-poisson/demo_nonlinear-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/biharmonic/demo_biharmonic.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/mixed-poisson/demo_mixed-poisson.py extract written to /build/dolfin-2018.1.0.post1/python/demo/documented/cahn-hilliard/demo_cahn-hilliard.py Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/eigenvalue ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/neumann-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/nonmatching-interpolation ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/stokes-iterative ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/maxwell-eigenvalues ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/auto-adaptive-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/hyperelasticity ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/built-in-meshes ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/singular-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/nonlinear-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/biharmonic ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/mixed-poisson ... Converting rst files in in /build/dolfin-2018.1.0.post1/python/demo/documented/cahn-hilliard ... dh_install -X*.rst make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_install -O--buildsystem=cmake -Npython-dolfin -Ndolfin-doc -Ndolfin-bin dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_python3 -O--buildsystem=cmake I: dh_python3 tools:114: replacing shebang in debian/dolfin-bin/usr/bin/dolfin-order I: dh_python3 tools:114: replacing shebang in debian/dolfin-bin/usr/bin/dolfin-convert I: dh_python3 tools:114: replacing shebang in debian/dolfin-bin/usr/bin/dolfin-plot dh_installinit -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake debian/rules override_dh_compress make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_compress -X.py -X.cpp -X.h -X.pdf -X.ufl make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_fixperms chmod a-x debian/dolfin-doc/usr/share/dolfin/demo-python/*/*/*.py make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_fixperms -O--buildsystem=cmake -Npython-dolfin -Ndolfin-doc -Ndolfin-bin dh_missing -O--buildsystem=cmake debian/rules override_dh_dwz make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_dwz -Xcpp.cpython make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' debian/rules override_dh_strip make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_strip --package=libdolfin2018.1 --dbgsym-migration='libdolfin2017.2-dbg (<< 2017.2.0.post0-1~)' -Xpython dh_strip --package=python3-dolfin --dbgsym-migration='python3-dolfin-dbg (<< 2017.2.0.post0-1~)' -Xpython2 make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_makeshlibs -O--buildsystem=cmake debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info dpkg-shlibdeps: warning: debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so contains an unresolvable reference to symbol PySequence_Tuple: it's probably a plugin dpkg-shlibdeps: warning: 131 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libhdf5_openmpi.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libboost_system.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libboost_chrono.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libslepc_real.so.3.10 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfin/usr/lib/python3/dist-packages/dolfin/cpp.cpython-37m-i386-linux-gnu.so was not linked against libboost_timer.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: symbol pthread_create used by debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libccolamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libboost_chrono.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libptscotcherr-6.so (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libscotch-6.so (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libcamd.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libsuitesparseconfig.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against liblapack.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libboost_regex.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against librt.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libdolfin2018.1/usr/lib/i386-linux-gnu/libdolfin.so.2018.1.0 was not linked against libcolamd.so.2 (it uses none of the library's symbols) make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol make[1]: Entering directory '/build/dolfin-2018.1.0.post1' py3versions: no X-Python3-Version in control file, using supported versions echo "python3-petsc4py:Depends=python3-petsc4py (>= 3.10), python3-petsc4py (<< 3.11), python3-slepc4py (>= 3.10), python3-slepc4py (<< 3.11)" >> debian/python3-dolfin.substvars echo "python-petsc4py-alt:Depends=python3-petsc4py (>= 3.10), python3-petsc4py (<< 3.11), python3-slepc4py (>= 3.10), python3-slepc4py (<< 3.11)" >> debian/libdolfin-dev.substvars dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.10-dev | libpetsc3.10.3-dev, libslepc-real3.10-dev | libslepc3.10.1-dev" -Vfenics:Upstream-Version=2018.1 -Vfenics:Next-Upstream-Version=2018.2~ \ -Vpybind11:Upstream-Version=2.2.4 -Vpybind11:Next-Upstream-Version=2.2.5 dpkg-gencontrol: warning: package python3-dolfin: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-dolfin: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libdolfin2018.1: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-dolfin: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfin-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfin-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfin-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfin2018.1: substitution variable ${python3:Depends} unused, but is defined make[1]: Leaving directory '/build/dolfin-2018.1.0.post1' dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libdolfin2018.1-dbgsym' in '../libdolfin2018.1-dbgsym_2018.1.0.post1-16_i386.deb'. dpkg-deb: building package 'libdolfin-dev' in '../libdolfin-dev_2018.1.0.post1-16_i386.deb'. dpkg-deb: building package 'libdolfin2018.1' in '../libdolfin2018.1_2018.1.0.post1-16_i386.deb'. dpkg-deb: building package 'python-dolfin' in '../python-dolfin_2018.1.0.post1-16_all.deb'. dpkg-deb: building package 'python3-dolfin' in '../python3-dolfin_2018.1.0.post1-16_i386.deb'. dpkg-deb: building package 'dolfin-doc' in '../dolfin-doc_2018.1.0.post1-16_all.deb'. dpkg-deb: building package 'dolfin-bin' in '../dolfin-bin_2018.1.0.post1-16_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dolfin_2018.1.0.post1-16_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2865 and its subdirectories I: Current time: Fri Dec 3 15:26:40 -12 2021 I: pbuilder-time-stamp: 1638588400