W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Tue May 5 13:24:00 -12 2020 I: pbuilder-time-stamp: 1588728240 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [cdk_1.2.10-7.dsc] I: copying [./cdk_1.2.10.orig.tar.gz] I: copying [./cdk_1.2.10-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Mar 30 08:57:00 2018 -12 gpgv: using RSA key B8CE4DE21080DCF903E16C40F513C419E4B9D0AC gpgv: issuer "ebourg@apache.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cdk_1.2.10-7.dsc dpkg-source: info: extracting cdk in cdk-1.2.10 dpkg-source: info: unpacking cdk_1.2.10.orig.tar.gz dpkg-source: info: unpacking cdk_1.2.10-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 22_fix_build.patch dpkg-source: info: applying ant19.patch dpkg-source: info: applying jama-1.0.3.patch dpkg-source: info: applying java8-compatibility.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: ant-contrib, ant-optional, antlr, debhelper (>= 11), default-jdk, docbook-xsl (>= 1.66.1), javacc, javahelper, libjama-java (>= 1.0.3), libjgrapht0.6-java, liblog4j1.2-java, libvecmath-java, libxerces2-java, libxom-java, libxpp3-java, r-cran-rjava dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on ant-contrib; however: Package ant-contrib is not installed. pbuilder-satisfydepends-dummy depends on ant-optional; however: Package ant-optional is not installed. pbuilder-satisfydepends-dummy depends on antlr; however: Package antlr is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on docbook-xsl (>= 1.66.1); however: Package docbook-xsl is not installed. pbuilder-satisfydepends-dummy depends on javacc; however: Package javacc is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on libjama-java (>= 1.0.3); however: Package libjama-java is not installed. pbuilder-satisfydepends-dummy depends on libjgrapht0.6-java; however: Package libjgrapht0.6-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j1.2-java; however: Package liblog4j1.2-java is not installed. pbuilder-satisfydepends-dummy depends on libvecmath-java; however: Package libvecmath-java is not installed. pbuilder-satisfydepends-dummy depends on libxerces2-java; however: Package libxerces2-java is not installed. pbuilder-satisfydepends-dummy depends on libxom-java; however: Package libxom-java is not installed. pbuilder-satisfydepends-dummy depends on libxpp3-java; however: Package libxpp3-java is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rjava; however: Package r-cran-rjava is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-contrib{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} docbook-xsl{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} java-common{a} javacc{a} javahelper{a} junit{a} libantlr-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libblas3{a} libbsd0{a} libcairo2{a} libclass-method-modifiers-perl{a} libcroco3{a} libcups2{a} libcurl4{a} libdatrie1{a} libdbus-1-3{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu63{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjama-java{a} libjaxen-java{a} libjbig0{a} libjgraph-java{a} libjgrapht0.6-java{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} liblog4j1.2-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec2{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libnpth0{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libstrictures-perl{a} libsub-exporter-progressive-perl{a} libsub-quote-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvecmath-java{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxom-java{a} libxpp3-java{a} libxrender1{a} libxshmfence1{a} libxss1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} lsb-base{a} m4{a} man-db{a} mime-support{a} netbase{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} r-base-core{a} r-cran-rjava{a} readline-common{a} sensible-utils{a} sgml-base{a} ucf{a} unzip{a} wdiff{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: at curl dbus debian-keyring docbook-xml dput dput-ng dupload equivs fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libclass-xsaccessor-perl libdata-dump-perl libdistro-info-perl libfile-mimeinfo-perl libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnet-dbus-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libx11-protocol-perl libxt-dev licensecheck lintian lynx publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg r-base-dev r-doc-html r-recommended shared-mime-info strace wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 242 newly installed, 0 to remove and 0 not upgraded. Need to get 430 MB of archives. After unpacking 918 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u2 [1538 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB] Get: 11 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main i386 sgml-base all 1.29 [14.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 netbase all 5.6 [19.4 kB] Get: 22 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 25 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 26 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 27 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 28 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u2 [853 kB] Get: 29 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libnspr4 i386 2:4.20-1 [122 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libnss3 i386 2:3.42.1-1+deb10u2 [1237 kB] Get: 32 http://deb.debian.org/debian buster/main i386 ca-certificates-java all 20190405 [15.7 kB] Get: 33 http://deb.debian.org/debian buster/main i386 java-common all 0.71 [14.4 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.16-1 [226 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6+deb10u2 [338 kB] Get: 44 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB] Get: 48 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 49 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 50 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libasound2-data all 1.1.8-1 [59.6 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libasound2 i386 1.1.8-1 [382 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libpcsclite1 i386 1.8.24-1 [60.0 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB] Get: 61 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 62 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 63 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libxtst6 i386 2:1.2.3-1 [28.3 kB] Get: 65 http://deb.debian.org/debian buster/main i386 openjdk-11-jre-headless i386 11.0.6+10-1~deb10u1 [36.9 MB] Get: 66 http://deb.debian.org/debian buster/main i386 default-jre-headless i386 2:1.11-71 [10.9 kB] Get: 67 http://deb.debian.org/debian buster/main i386 ant all 1.10.5-2 [2082 kB] Get: 68 http://deb.debian.org/debian buster/main i386 ant-contrib all 1.0~b3+svn177-10 [262 kB] Get: 69 http://deb.debian.org/debian buster/main i386 ant-optional all 1.10.5-2 [379 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libantlr-java all 2.7.7+dfsg-9.2 [459 kB] Get: 71 http://deb.debian.org/debian buster/main i386 antlr all 2.7.7+dfsg-9.2 [13.9 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 73 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 74 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 75 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 76 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 77 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 78 http://deb.debian.org/debian buster/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 79 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 80 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 81 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 82 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 83 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 84 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 85 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 86 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 89 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 91 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 92 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 93 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 94 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 95 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB] Get: 97 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB] Get: 98 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB] Get: 99 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1 [190 kB] Get: 100 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB] Get: 102 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB] Get: 105 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB] Get: 106 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB] Get: 107 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 108 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 109 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB] Get: 110 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 111 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB] Get: 113 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 115 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8 [13.0 MB] Get: 116 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 117 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB] Get: 118 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB] Get: 119 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB] Get: 120 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB] Get: 121 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB] Get: 122 http://deb.debian.org/debian buster/main i386 libgif7 i386 5.1.4-3 [44.4 kB] Get: 123 http://deb.debian.org/debian buster/main i386 openjdk-11-jre i386 11.0.6+10-1~deb10u1 [34.8 kB] Get: 124 http://deb.debian.org/debian buster/main i386 default-jre i386 2:1.11-71 [1044 B] Get: 125 http://deb.debian.org/debian buster/main i386 openjdk-11-jdk-headless i386 11.0.6+10-1~deb10u1 [280 MB] Get: 126 http://deb.debian.org/debian buster/main i386 default-jdk-headless i386 2:1.11-71 [1104 B] Get: 127 http://deb.debian.org/debian buster/main i386 openjdk-11-jdk i386 11.0.6+10-1~deb10u1 [2140 kB] Get: 128 http://deb.debian.org/debian buster/main i386 default-jdk i386 2:1.11-71 [1056 B] Get: 129 http://deb.debian.org/debian buster/main i386 libassuan0 i386 2.5.2-1 [51.5 kB] Get: 130 http://deb.debian.org/debian buster/main i386 gpgconf i386 2.2.12-1+deb10u1 [517 kB] Get: 131 http://deb.debian.org/debian buster/main i386 libksba8 i386 1.3.5-2 [107 kB] Get: 132 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 133 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 134 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u1 [89.6 kB] Get: 135 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u1 [236 kB] Get: 136 http://deb.debian.org/debian buster/main i386 libnpth0 i386 1.6-1 [18.7 kB] Get: 137 http://deb.debian.org/debian buster/main i386 dirmngr i386 2.2.12-1+deb10u1 [738 kB] Get: 138 http://deb.debian.org/debian buster/main i386 gnupg-l10n all 2.2.12-1+deb10u1 [1010 kB] Get: 139 http://deb.debian.org/debian buster/main i386 gnupg-utils i386 2.2.12-1+deb10u1 [908 kB] Get: 140 http://deb.debian.org/debian buster/main i386 gpg i386 2.2.12-1+deb10u1 [905 kB] Get: 141 http://deb.debian.org/debian buster/main i386 pinentry-curses i386 1.1.0-2 [66.3 kB] Get: 142 http://deb.debian.org/debian buster/main i386 gpg-agent i386 2.2.12-1+deb10u1 [636 kB] Get: 143 http://deb.debian.org/debian buster/main i386 gpg-wks-client i386 2.2.12-1+deb10u1 [496 kB] Get: 144 http://deb.debian.org/debian buster/main i386 gpg-wks-server i386 2.2.12-1+deb10u1 [487 kB] Get: 145 http://deb.debian.org/debian buster/main i386 gpgsm i386 2.2.12-1+deb10u1 [624 kB] Get: 146 http://deb.debian.org/debian buster/main i386 gnupg all 2.2.12-1+deb10u1 [715 kB] Get: 147 http://deb.debian.org/debian buster/main i386 libfile-which-perl all 1.23-1 [16.6 kB] Get: 148 http://deb.debian.org/debian buster/main i386 libfile-homedir-perl all 1.004-1 [42.7 kB] Get: 149 http://deb.debian.org/debian buster/main i386 libio-pty-perl i386 1:1.08-1.1+b5 [34.4 kB] Get: 150 http://deb.debian.org/debian buster/main i386 libipc-run-perl all 20180523.0-1 [101 kB] Get: 151 http://deb.debian.org/debian buster/main i386 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get: 152 http://deb.debian.org/debian buster/main i386 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 153 http://deb.debian.org/debian buster/main i386 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get: 154 http://deb.debian.org/debian buster/main i386 libb-hooks-op-check-perl i386 0.22-1+b1 [11.5 kB] Get: 155 http://deb.debian.org/debian buster/main i386 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 156 http://deb.debian.org/debian buster/main i386 libdevel-callchecker-perl i386 0.008-1 [15.7 kB] Get: 157 http://deb.debian.org/debian buster/main i386 libparams-classify-perl i386 0.015-1+b1 [26.1 kB] Get: 158 http://deb.debian.org/debian buster/main i386 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 159 http://deb.debian.org/debian buster/main i386 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 160 http://deb.debian.org/debian buster/main i386 librole-tiny-perl all 2.000006-1 [19.4 kB] Get: 161 http://deb.debian.org/debian buster/main i386 libstrictures-perl all 2.000005-1 [18.3 kB] Get: 162 http://deb.debian.org/debian buster/main i386 libsub-quote-perl all 2.005001-1 [17.9 kB] Get: 163 http://deb.debian.org/debian buster/main i386 libmoo-perl all 2.003004-2 [57.4 kB] Get: 164 http://deb.debian.org/debian buster/main i386 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 165 http://deb.debian.org/debian buster/main i386 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 166 http://deb.debian.org/debian buster/main i386 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 167 http://deb.debian.org/debian buster/main i386 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 168 http://deb.debian.org/debian buster/main i386 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 169 http://deb.debian.org/debian buster/main i386 liburi-perl all 1.76-1 [89.9 kB] Get: 170 http://deb.debian.org/debian buster/main i386 libhtml-parser-perl i386 3.72-3+b3 [106 kB] Get: 171 http://deb.debian.org/debian buster/main i386 libhtml-tree-perl all 5.07-2 [213 kB] Get: 172 http://deb.debian.org/debian buster/main i386 libio-html-perl all 1.001-1 [17.6 kB] Get: 173 http://deb.debian.org/debian buster/main i386 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 174 http://deb.debian.org/debian buster/main i386 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 175 http://deb.debian.org/debian buster/main i386 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 176 http://deb.debian.org/debian buster/main i386 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 177 http://deb.debian.org/debian buster/main i386 perl-openssl-defaults i386 3 [6782 B] Get: 178 http://deb.debian.org/debian buster/main i386 libnet-ssleay-perl i386 1.85-2+b1 [314 kB] Get: 179 http://deb.debian.org/debian buster/main i386 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 180 http://deb.debian.org/debian buster/main i386 libnet-http-perl all 6.18-1 [24.5 kB] Get: 181 http://deb.debian.org/debian buster/main i386 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 182 http://deb.debian.org/debian buster/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 183 http://deb.debian.org/debian buster/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 184 http://deb.debian.org/debian buster/main i386 libwww-perl all 6.36-2 [188 kB] Get: 185 http://deb.debian.org/debian buster/main i386 patchutils i386 0.3.4-2 [92.4 kB] Get: 186 http://deb.debian.org/debian buster/main i386 wdiff i386 1.2.2-2+b1 [123 kB] Get: 187 http://deb.debian.org/debian buster/main i386 devscripts i386 2.19.5+deb10u1 [1046 kB] Get: 188 http://deb.debian.org/debian buster/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 189 http://deb.debian.org/debian buster/main i386 docbook-xsl all 1.79.1+dfsg-2 [1249 kB] Get: 190 http://deb.debian.org/debian buster/main i386 fontconfig i386 2.13.1-2 [405 kB] Get: 191 http://deb.debian.org/debian buster/main i386 junit all 3.8.2-9 [110 kB] Get: 192 http://deb.debian.org/debian buster/main i386 javacc all 5.0-8 [280 kB] Get: 193 http://deb.debian.org/debian buster/main i386 javahelper all 0.72.9 [96.4 kB] Get: 194 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 195 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 196 http://deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 197 http://deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 198 http://deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 199 http://deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 200 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB] Get: 201 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 202 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 203 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 204 http://deb.debian.org/debian buster/main i386 libcurl4 i386 7.64.0-4 [358 kB] Get: 205 http://deb.debian.org/debian buster/main i386 libdatrie1 i386 0.2.12-2 [40.7 kB] Get: 206 http://deb.debian.org/debian buster/main i386 libfribidi0 i386 1.0.5-3.1+deb10u1 [64.3 kB] Get: 207 http://deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 208 http://deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 209 http://deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 210 http://deb.debian.org/debian buster/main i386 libjama-java all 1.0.3-1 [31.4 kB] Get: 211 http://deb.debian.org/debian buster/main i386 libjaxen-java all 1.1.6-4 [214 kB] Get: 212 http://deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 213 http://deb.debian.org/debian buster/main i386 libjgraph-java all 5.12.4.2+dfsg-5 [205 kB] Get: 214 http://deb.debian.org/debian buster/main i386 libjgrapht0.6-java all 0.6.0-11 [81.0 kB] Get: 215 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 216 http://deb.debian.org/debian buster/main i386 liblog4j1.2-java all 1.2.17-8 [430 kB] Get: 217 http://deb.debian.org/debian buster/main i386 libthai-data all 0.1.28-2 [170 kB] Get: 218 http://deb.debian.org/debian buster/main i386 libthai0 i386 0.1.28-2 [55.2 kB] Get: 219 http://deb.debian.org/debian buster/main i386 libpango-1.0-0 i386 1.42.4-7~deb10u1 [191 kB] Get: 220 http://deb.debian.org/debian buster/main i386 libpangoft2-1.0-0 i386 1.42.4-7~deb10u1 [71.0 kB] Get: 221 http://deb.debian.org/debian buster/main i386 libpangocairo-1.0-0 i386 1.42.4-7~deb10u1 [57.1 kB] Get: 222 http://deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.28 [21.4 kB] Get: 223 http://deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.28 [18.3 kB] Get: 224 http://deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 225 http://deb.debian.org/debian buster/main i386 libtcl8.6 i386 8.6.9+dfsg-2 [1065 kB] Get: 226 http://deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 227 http://deb.debian.org/debian buster/main i386 libtiff5 i386 4.1.0+git191117-2~deb10u1 [284 kB] Get: 228 http://deb.debian.org/debian buster/main i386 libxft2 i386 2.3.2-2 [58.2 kB] Get: 229 http://deb.debian.org/debian buster/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 230 http://deb.debian.org/debian buster/main i386 libtk8.6 i386 8.6.9-2 [809 kB] Get: 231 http://deb.debian.org/debian buster/main i386 libvecmath-java all 1.5.2-7 [97.0 kB] Get: 232 http://deb.debian.org/debian buster/main i386 libxml-commons-external-java all 1.4.01-3 [240 kB] Get: 233 http://deb.debian.org/debian buster/main i386 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] Get: 234 http://deb.debian.org/debian buster/main i386 libxerces2-java all 2.12.0-1 [1440 kB] Get: 235 http://deb.debian.org/debian buster/main i386 libxom-java all 1.2.10-1 [170 kB] Get: 236 http://deb.debian.org/debian buster/main i386 libxpp3-java all 1.1.4c-3 [292 kB] Get: 237 http://deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB] Get: 238 http://deb.debian.org/debian buster/main i386 zip i386 3.0-11+b1 [242 kB] Get: 239 http://deb.debian.org/debian buster/main i386 unzip i386 6.0-23+deb10u1 [171 kB] Get: 240 http://deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1 [73.3 kB] Get: 241 http://deb.debian.org/debian buster/main i386 r-base-core i386 3.5.2-1 [24.0 MB] Get: 242 http://deb.debian.org/debian buster/main i386 r-cran-rjava i386 0.9-10-2+b1 [659 kB] Fetched 430 MB in 3min 10s (2261 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../2-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../4-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../6-libssl1.1_1.1.1d-0+deb10u2_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u2) ... Selecting previously unselected package libpython3.7-minimal:i386. Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2+deb10u1_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.3-2+deb10u1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../8-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2+deb10u1_i386.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u1) ... Setting up libssl1.1:i386 (1.1.1d-0+deb10u2) ... Setting up libpython3.7-minimal:i386 (3.7.3-2+deb10u1) ... Setting up libexpat1:i386 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20126 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../2-libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... 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Setting up wdiff (1.2.2-2+b1) ... Setting up lsb-base (10.2019051400) ... Setting up libx11-xcb1:i386 (2:1.6.7-1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:i386 (1:1.0.8-1+b2) ... Setting up libkeyutils1:i386 (1.6-6) ... Setting up libpsl5:i386 (0.20.2-2) ... Setting up mime-support (3.62) ... Setting up java-common (0.71) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libdatrie1:i386 (0.2.12-2) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libvecmath-java (1.5.2-7) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libglvnd0:i386 (1.1.0-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up unzip (6.0-23+deb10u1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:i386 (1.36.0-2+deb10u1) ... Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up perl-openssl-defaults:i386 (3) ... Setting up liblog4j1.2-java (1.2.17-8) ... Setting up libjama-java (1.0.3-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libnpth0:i386 (1.6-1) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libassuan0:i386 (2.5.2-1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u1) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libicu63:i386 (63.1-6) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up libasound2-data (1.1.8-1) ... Setting up patchutils (0.3.4-2) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:i386 (1:1.5.2-2+b1) ... Setting up junit (3.8.2-9) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libnspr4:i386 (2:4.20-1) ... Setting up gnupg-l10n (2.2.12-1+deb10u1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up libavahi-common-data:i386 (0.7-4+b1) ... Setting up libxpp3-java (1.1.4c-3) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:i386 (1.12.16-1) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libfribidi0:i386 (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:i386 (1.6.36-6) ... Setting up libxml-commons-resolver1.1-java (1.2-9) ... Setting up libio-html-perl (1.001-1) ... Setting up libtcl8.6:i386 (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:i386 (0.6.1-2) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libpcsclite1:i386 (1.8.24-1) ... Setting up libsensors5:i386 (1:3.5.0-3) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libjgraph-java (5.12.4.2+dfsg-5) ... Setting up libglapi-mesa:i386 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libgif7:i386 (5.1.4-3) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libxml-commons-external-java (1.4.01-3) ... Setting up libasound2:i386 (1.1.8-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libthai-data (0.1.28-2) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libssh2-1:i386 (1.8.0-2.1) ... Setting up netbase (5.6) ... Setting up sgml-base (1.29) ... Setting up libstrictures-perl (2.000005-1) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libtiff5:i386 (4.1.0+git191117-2~deb10u1) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libxerces2-java (2.12.0-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libantlr-java (2.7.7+dfsg-9.2) ... Setting up openssl (1.1.1d-0+deb10u2) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1) ... Setting up liburi-perl (1.76-1) ... Setting up libjgrapht0.6-java (0.6.0-11) ... Setting up dctrl-tools (2.24-3) ... Setting up libreadline7:i386 (7.0-5) ... Setting up gnupg-utils (2.2.12-1+deb10u1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up pinentry-curses (1.1.0-2) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libxcb-glx0:i386 (1.13.1-2) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up libavahi-common3:i386 (0.7-4+b1) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3+deb10u1) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up libnss3:i386 (2:3.42.1-1+deb10u2) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libxom-java (1.2.10-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libxcb-present0:i386 (1.13.1-2) ... Setting up libthai0:i386 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libfreetype6:i386 (2.9.1-3+deb10u1) ... Setting up libxcb-sync1:i386 (1.13.1-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:i386 (1.13.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:i386 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.12-1+deb10u1) ... Setting up libcurl4:i386 (7.64.0-4) ... Setting up libllvm7:i386 (1:7.0.1-8) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libharfbuzz0b:i386 (2.3.1-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.7-4+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.12-1+deb10u1) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libdrm-amdgpu1:i386 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.13.1-2) ... Setting up libpaper1:i386 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libdrm-nouveau2:i386 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up gpg-agent (2.2.12-1+deb10u1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libdrm-radeon1:i386 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up gpgsm (2.2.12-1+deb10u1) ... Setting up libdrm-intel1:i386 (2.4.97-1) ... Setting up libgl1-mesa-dri:i386 (18.3.6-2+deb10u1) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dirmngr (2.2.12-1+deb10u1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libxt6:i386 (1:1.1.5-1+b3) ... Setting up gpg-wks-server (2.2.12-1+deb10u1) ... Setting up libcups2:i386 (2.2.10-6+deb10u2) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libfontconfig1:i386 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:i386 (2.3.2-2) ... Setting up libxdamage1:i386 (1:1.1.4-3+b3) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up gpg-wks-client (2.2.12-1+deb10u1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:i386 (2:1.2.3-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:i386 (8.6.9-2) ... Setting up libpango-1.0-0:i386 (1.42.4-7~deb10u1) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up gnupg (2.2.12-1+deb10u1) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-7~deb10u1) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-7~deb10u1) ... Setting up libglx-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libglx0:i386 (1.1.0-1) ... Setting up libgl1:i386 (1.1.0-1) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up default-jre-headless (2:1.11-71) ... Setting up libwww-perl (6.36-2) ... Setting up openjdk-11-jre-headless:i386 (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode OpenJDK Client VM warning: Ignoring option PermSize; support was removed in 8.0 Setting up openjdk-11-jre:i386 (11.0.6+10-1~deb10u1) ... Setting up openjdk-11-jdk-headless:i386 (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up antlr (2.7.7+dfsg-9.2) ... Setting up dh-autoreconf (19) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up devscripts (2.19.5+deb10u1) ... Setting up r-cran-rjava (0.9-10-2+b1) ... Setting up ant (1.10.5-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up openjdk-11-jdk:i386 (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Izenpe.com.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Certigna.pem Adding debian:ACCVRAIZ1.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:ISRG_Root_X1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:DST_Root_CA_X3.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Taiwan_GRCA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:SecureTrust_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:EC-ACC.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:AffirmTrust_Networking.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:AddTrust_External_Root.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem done. Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up javacc (5.0-8) ... Setting up ant-contrib (1.0~b3+svn177-10) ... Setting up debhelper (12.1.1) ... Setting up default-jdk (2:1.11-71) ... Setting up ant-optional (1.10.5-2) ... Setting up javahelper (0.72.9) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docbook-xsl (1.79.1+dfsg-2) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/cdk-1.2.10/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package cdk dpkg-buildpackage: info: source version 1:1.2.10-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Bourg dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with javahelper dh_auto_clean ant -propertyfile ./debian/ant.properties clean Buildfile: /build/cdk-1.2.10/build.xml clean: BUILD SUCCESSFUL Total time: 1 second jh_clean dh_clean debian/rules build dh build --with javahelper dh_update_autotools_config dh_autoreconf dh_auto_configure jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/cdk-1.2.10' dh_auto_build -- -Dlib=/usr/share/java info dist-all ant -propertyfile ./debian/ant.properties -Duser.name debian -Dlib=/usr/share/java info dist-all Buildfile: /build/cdk-1.2.10/build.xml checkPlatforms: check: info: [echo] Platform: [echo] OS: Linux [echo] Architecture: i386 [echo] Version: 4.19.0-8-686-pae [echo] Mac OS/X found: ${isMacOsX} [echo] [echo] Java/Ant Environment: [echo] Java version: 11.0.6 [echo] Java vendor: Debian [echo] Java dir: /usr/lib/jvm/java-11-openjdk-i386 [echo] Java ext dir: ${java.ext.dirs} [echo] Ant version: Apache Ant(TM) version 1.10.5 compiled on August 27 2018 [echo] ${ANT_HOME}: /usr/share/ant [echo] hasAnt17: true [echo] [echo] CDK Environment: [echo] CDK version: 1.2.10 [echo] build.xml: $Id$ [echo] Junit found: true [echo] --- required libraries --- [echo] Vecmath found: true [echo] Log4j found: true [echo] JGraphT found: true [echo] --- distributed (but optional) libraries --- [echo] CMLDOM found: ${cmllibs.present} [echo] --- optional libraries --- [echo] [echo] Compiling: [echo] for: modern [echo] debug: on [echo] deprecation: on [echo] optimization: off [echo] parallel: false [echo] threads: 4 [echo] [echo] Available Targets [echo] clean: Remove class files and any temporary files [echo] dist-all: Compile all modules [echo] dist-large: Create the comprehensive jar, with all modules [echo] test-dist-all: Compile all test modules [echo] test-dist-large: Create a single jar file with all test modules [echo] jarTestdata: Create the jar file with all test data. Used in testing [echo] dist-all: checkPlatforms: check: setupBuildDir: [mkdir] Created dir: /build/cdk-1.2.10/build [mkdir] Created dir: /build/cdk-1.2.10/sourcedist [mkdir] Created dir: /build/cdk-1.2.10/dist [mkdir] Created dir: /build/cdk-1.2.10/reports init: javacc: [echo] Compiling Ant 1.6 depending classes. [javacc] Java Compiler Compiler Version 5.0 (Parser Generator) [javacc] (type "javacc" with no arguments for help) [javacc] Reading from file /build/cdk-1.2.10/src/main/org/openscience/cdk/iupac/parser/NomParser.jj . . . [javacc] Warning: Line 3, Column 1: Bad option name "OPTIMIZE_TOKEN_MANAGER". Option setting will be ignored. [javacc] File "TokenMgrError.java" does not exist. Will create one. [javacc] File "ParseException.java" does not exist. Will create one. [javacc] File "Token.java" does not exist. Will create one. [javacc] File "SimpleCharStream.java" does not exist. Will create one. [javacc] Parser generated with 0 errors and 1 warnings. [jjtree] Java Compiler Compiler Version 5.0 (Tree Builder) [jjtree] (type "jjtree" with no arguments for help) [jjtree] Reading from file /build/cdk-1.2.10/src/main/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jjt . . . [jjtree] File "SMARTSParserTreeConstants.java" does not exist. Will create one. [jjtree] File "SMARTSParserVisitor.java" does not exist. Will create one. [jjtree] File "JJTSMARTSParserState.java" does not exist. Will create one. [jjtree] Annotated grammar generated successfully in /build/cdk-1.2.10/src/main/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jj [javacc] Java Compiler Compiler Version 5.0 (Parser Generator) [javacc] (type "javacc" with no arguments for help) [javacc] Reading from file /build/cdk-1.2.10/src/main/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jj . . . [javacc] File "TokenMgrError.java" does not exist. Will create one. [javacc] File "ParseException.java" does not exist. Will create one. [javacc] File "Token.java" does not exist. Will create one. [javacc] File "SimpleCharStream.java" does not exist. Will create one. [javacc] Parser generated successfully. [replace] Replaced 10 occurrences in 10 files. customize: runDoclet: [echo] Not skipping doclet run... [javac] Using javac -source 1.5 is no longer supported, switching to 6 [javac] Compiling 1 source file to /build/cdk-1.2.10/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 3 warnings compile-init: checkPlatforms: check: dist.init: [mkdir] Created dir: /build/cdk-1.2.10/dist/jar compile-needed-test: compile-module: [echo] Compiling classes for CDK's interfaces module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: ${module.cdkdepends.present} [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/interfaces [mkdir] Created dir: /build/cdk-1.2.10/build/interfaces [copy] Copying 45 files to /build/cdk-1.2.10/build/src/interfaces [javac] Compiling 45 source files to /build/cdk-1.2.10/build/interfaces [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-interfaces.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-interfaces-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/interfaces [delete] Deleting directory /build/cdk-1.2.10/build/interfaces checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's annotation module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: ${module.cdkdepends.present} [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/annotation [mkdir] Created dir: /build/cdk-1.2.10/build/annotation [copy] Copying 3 files to /build/cdk-1.2.10/build/src/annotation [javac] Compiling 3 source files to /build/cdk-1.2.10/build/annotation [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-annotation.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-annotation-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/annotation [delete] Deleting directory /build/cdk-1.2.10/build/annotation checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's core module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/core [mkdir] Created dir: /build/cdk-1.2.10/build/core [copy] Copying 25 files to /build/cdk-1.2.10/build/src/core [javac] Compiling 25 source files to /build/cdk-1.2.10/build/core [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/AtomTypeFactory.java:227: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.openscience.cdk.config.TXTBasedAtomTypeConfigurator"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/AtomTypeFactory.java:231: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.openscience.cdk.config.CDKBasedAtomTypeConfigurator"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/AtomTypeFactory.java:235: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.openscience.cdk.config.OWLBasedAtomTypeConfigurator"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/TXTBasedAtomTypeConfigurator.java:120: warning: [deprecation] Double(String) in Double has been deprecated [javac] mass = new Double(sam); [javac] ^ [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/TXTBasedAtomTypeConfigurator.java:121: warning: [deprecation] Double(String) in Double has been deprecated [javac] covalent = new Double(scovalent); [javac] ^ [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/atomtypes/AtomTypeReader.java:90: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/atomtypes/AtomTypeReader.java:103: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/atomtypes/OWLAtomTypeReader.java:86: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/isotopes/IsotopeReader.java:98: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/core/org/openscience/cdk/config/isotopes/IsotopeReader.java:111: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] 14 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-core.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-core-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/core [delete] Deleting directory /build/cdk-1.2.10/build/core checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's ioformats module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/ioformats [mkdir] Created dir: /build/cdk-1.2.10/build/ioformats [copy] Copying 94 files to /build/cdk-1.2.10/build/src/ioformats [javac] Compiling 94 source files to /build/cdk-1.2.10/build/ioformats [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ioformats.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ioformats-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/ioformats [delete] Deleting directory /build/cdk-1.2.10/build/ioformats checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's data module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/data [mkdir] Created dir: /build/cdk-1.2.10/build/data [copy] Copying 41 files to /build/cdk-1.2.10/build/src/data [javac] Compiling 41 source files to /build/cdk-1.2.10/build/data [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/data/org/openscience/cdk/formula/AdductFormula.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-data.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-data-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/data [delete] Deleting directory /build/cdk-1.2.10/build/data checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's dict module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/dict [mkdir] Created dir: /build/cdk-1.2.10/build/dict [copy] Copying 8 files to /build/cdk-1.2.10/build/src/dict [javac] Compiling 8 source files to /build/cdk-1.2.10/build/dict [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/dict/org/openscience/cdk/dict/Dictionary.java:35: warning: [deprecation] XMLReaderFactory in org.xml.sax.helpers has been deprecated [javac] import org.xml.sax.helpers.XMLReaderFactory; [javac] ^ [javac] /build/cdk-1.2.10/build/src/dict/org/openscience/cdk/dict/Dictionary.java:68: warning: [deprecation] XMLReaderFactory in org.xml.sax.helpers has been deprecated [javac] parser = XMLReaderFactory.createXMLReader(); [javac] ^ [javac] 6 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-dict.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-dict-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/dict [delete] Deleting directory /build/cdk-1.2.10/build/dict checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's diff module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/diff [mkdir] Created dir: /build/cdk-1.2.10/build/diff [copy] Copying 24 files to /build/cdk-1.2.10/build/src/diff [javac] Compiling 24 source files to /build/cdk-1.2.10/build/diff [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-diff.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-diff-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/diff [delete] Deleting directory /build/cdk-1.2.10/build/diff checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qm module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qm [mkdir] Created dir: /build/cdk-1.2.10/build/qm [copy] Copying 16 files to /build/cdk-1.2.10/build/src/qm [javac] Compiling 16 source files to /build/cdk-1.2.10/build/qm [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/qm/org/openscience/cdk/renderer/GraphRendererModel.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qm.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qm-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qm [delete] Deleting directory /build/cdk-1.2.10/build/qm checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's standard module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/standard [mkdir] Created dir: /build/cdk-1.2.10/build/standard [copy] Copying 84 files to /build/cdk-1.2.10/build/src/standard [javac] Compiling 84 source files to /build/cdk-1.2.10/build/standard [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/standard/org/openscience/cdk/validate/ProblemMarker.java:49: warning: [deprecation] Boolean(boolean) in Boolean has been deprecated [javac] object.setProperty(ERROR_MARKER, new Boolean(true)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/standard/org/openscience/cdk/validate/ProblemMarker.java:54: warning: [deprecation] Boolean(boolean) in Boolean has been deprecated [javac] object.setProperty(WARNING_MARKER, new Boolean(true)); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 6 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-standard.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-standard-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/standard [delete] Deleting directory /build/cdk-1.2.10/build/standard checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's datadebug module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/datadebug [mkdir] Created dir: /build/cdk-1.2.10/build/datadebug [copy] Copying 39 files to /build/cdk-1.2.10/build/src/datadebug [javac] Compiling 39 source files to /build/cdk-1.2.10/build/datadebug [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAdductFormula.java:70: warning: [deprecation] setCharge(Integer) in AdductFormula has been deprecated [javac] public void setCharge(Integer charge) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAdductFormula.java:72: warning: [deprecation] setCharge(Integer) in AdductFormula has been deprecated [javac] super.setCharge(charge); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAminoAcid.java:256: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAminoAcid.java:258: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAtomContainer.java:277: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugAtomContainer.java:279: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugBioPolymer.java:269: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugBioPolymer.java:271: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugCrystal.java:278: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugCrystal.java:280: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMolecule.java:278: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMolecule.java:280: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMonomer.java:266: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugMonomer.java:268: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugPolymer.java:268: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugPolymer.java:270: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugRing.java:291: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugRing.java:293: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugStrand.java:268: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] public double getBondOrderSum(IAtom atom) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/datadebug/org/openscience/cdk/debug/DebugStrand.java:270: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] return super.getBondOrderSum(atom); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 24 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-datadebug.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-datadebug-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/datadebug [delete] Deleting directory /build/cdk-1.2.10/build/datadebug checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's nonotify module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/nonotify [mkdir] Created dir: /build/cdk-1.2.10/build/nonotify [copy] Copying 39 files to /build/cdk-1.2.10/build/src/nonotify [javac] Compiling 39 source files to /build/cdk-1.2.10/build/nonotify [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-nonotify.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-nonotify-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/nonotify [delete] Deleting directory /build/cdk-1.2.10/build/nonotify checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's isomorphism module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/isomorphism [mkdir] Created dir: /build/cdk-1.2.10/build/isomorphism [copy] Copying 16 files to /build/cdk-1.2.10/build/src/isomorphism [javac] Compiling 16 source files to /build/cdk-1.2.10/build/isomorphism [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-isomorphism.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-isomorphism-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/isomorphism [delete] Deleting directory /build/cdk-1.2.10/build/isomorphism checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's atomtype module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/atomtype [mkdir] Created dir: /build/cdk-1.2.10/build/atomtype [copy] Copying 4 files to /build/cdk-1.2.10/build/src/atomtype [javac] Compiling 4 source files to /build/cdk-1.2.10/build/atomtype [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/atomtype/org/openscience/cdk/config/atomtypes/OWLAtomTypeMappingReader.java:85: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-atomtype.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-atomtype-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/atomtype [delete] Deleting directory /build/cdk-1.2.10/build/atomtype checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's render module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/render [mkdir] Created dir: /build/cdk-1.2.10/build/render [copy] Copying 4 files to /build/cdk-1.2.10/build/src/render [javac] Compiling 4 source files to /build/cdk-1.2.10/build/render [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-render.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-render-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/render [delete] Deleting directory /build/cdk-1.2.10/build/render checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's valencycheck module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/valencycheck [mkdir] Created dir: /build/cdk-1.2.10/build/valencycheck [copy] Copying 6 files to /build/cdk-1.2.10/build/src/valencycheck [javac] Compiling 6 source files to /build/cdk-1.2.10/build/valencycheck [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-valencycheck.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-valencycheck-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/valencycheck [delete] Deleting directory /build/cdk-1.2.10/build/valencycheck checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's formula module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/formula [mkdir] Created dir: /build/cdk-1.2.10/build/formula [copy] Copying 19 files to /build/cdk-1.2.10/build/src/formula [javac] Compiling 19 source files to /build/cdk-1.2.10/build/formula [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/formula/org/openscience/cdk/tools/manipulator/MolecularFormulaManipulator.java:546: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] return new Integer(multiple); [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/formula/org/openscience/cdk/formula/rules/IsotopePatternRule.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-formula.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-formula-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/formula [delete] Deleting directory /build/cdk-1.2.10/build/formula checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's io module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/io [mkdir] Created dir: /build/cdk-1.2.10/build/io [copy] Copying 79 files to /build/cdk-1.2.10/build/src/io [javac] Compiling 79 source files to /build/cdk-1.2.10/build/io [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/CMLReader.java:147: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/CMLReader.java:160: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/Gaussian98Reader.java:504: warning: [deprecation] Double(double) in Double has been deprecated [javac] ac.getAtom(atomIndex).setProperty(CDKConstants.ISOTROPIC_SHIELDING, new Double(shielding)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:374: warning: [deprecation] Double(String) in Double has been deprecated [javac] x = new Double(line.substring( 0,10).trim()).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:375: warning: [deprecation] Double(String) in Double has been deprecated [javac] y = new Double(line.substring(10,20).trim()).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:376: warning: [deprecation] Double(String) in Double has been deprecated [javac] z = new Double(line.substring(20,30).trim()).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:481: warning: [deprecation] Double(double) in Double has been deprecated [javac] atom.setProperty("first shift",new Double(shift)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/MDLReader.java:485: warning: [deprecation] Double(double) in Double has been deprecated [javac] atom.setProperty("second shift",new Double(shift)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/ReaderFactory.java:156: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass(readerClassName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/WriterFactory.java:155: warning: [deprecation] newInstance() in Class has been deprecated [javac] if (writer != null) return writer.newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/WriterFactory.java:159: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass(writerClassName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:189: warning: [deprecation] Double(String) in Double has been deprecated [javac] x = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:190: warning: [deprecation] Double(String) in Double has been deprecated [javac] y = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:191: warning: [deprecation] Double(String) in Double has been deprecated [javac] z = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/XYZReader.java:194: warning: [deprecation] Double(String) in Double has been deprecated [javac] charge = (new Double(tokenizer.nextToken())).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/cml/QSARConvention.java:143: warning: [deprecation] Boolean(String) in Boolean has been deprecated [javac] result = new BooleanResult(new Boolean(descriptorValue).booleanValue()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/iterator/event/EventCMLReader.java:125: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/iterator/event/EventCMLReader.java:138: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/program/GaussianInputWriter.java:222: warning: [deprecation] Double(double) in Double has been deprecated [javac] st = st + new Double(p3.x).toString() + " " [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/program/GaussianInputWriter.java:223: warning: [deprecation] Double(double) in Double has been deprecated [javac] + new Double(p3.y).toString() + " " [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/program/GaussianInputWriter.java:224: warning: [deprecation] Double(double) in Double has been deprecated [javac] + new Double(p3.z).toString(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/random/RandomAccessReader.java:112: warning: [deprecation] finalize() in Object has been deprecated [javac] protected void finalize() throws Throwable { [javac] ^ [javac] /build/cdk-1.2.10/build/src/io/org/openscience/cdk/io/random/RandomAccessReader.java:118: warning: [deprecation] finalize() in Object has been deprecated [javac] super.finalize(); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 27 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-io.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-io-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/io [delete] Deleting directory /build/cdk-1.2.10/build/io checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's structgen module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/structgen [mkdir] Created dir: /build/cdk-1.2.10/build/structgen [copy] Copying 8 files to /build/cdk-1.2.10/build/src/structgen [javac] Compiling 8 source files to /build/cdk-1.2.10/build/structgen [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-structgen.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-structgen-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/structgen [delete] Deleting directory /build/cdk-1.2.10/build/structgen checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's pdb module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/pdb [mkdir] Created dir: /build/cdk-1.2.10/build/pdb [copy] Copying 4 files to /build/cdk-1.2.10/build/src/pdb [javac] Compiling 4 source files to /build/cdk-1.2.10/build/pdb [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:302: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] if (readConnect.isSet() && atomNumberMap.put(new Integer(oAtom.getSerial()), oAtom) != null) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:317: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] if (atomNumberMap.put(new Integer(oAtom.getSerial()), oAtom) != null) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:512: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] IAtom firstAtom = (PDBAtom)atomNumberMap.get(new Integer(bondAtomNo)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/pdb/org/openscience/cdk/io/PDBReader.java:513: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] IAtom secondAtom = (PDBAtom)atomNumberMap.get(new Integer(bondedAtomNo)); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 8 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdb.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdb-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/pdb [delete] Deleting directory /build/cdk-1.2.10/build/pdb checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's smiles module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/smiles [mkdir] Created dir: /build/cdk-1.2.10/build/smiles [copy] Copying 7 files to /build/cdk-1.2.10/build/src/smiles [javac] Compiling 7 source files to /build/cdk-1.2.10/build/smiles [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:992: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1049: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1238: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1257: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1276: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double(BondTools.giveAngle(atom, parent, ((IAtom) chiralNeighbours.get(i)))), Integer.valueOf(i)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/smiles/org/openscience/cdk/smiles/SmilesGenerator.java:1297: warning: [deprecation] Double(double) in Double has been deprecated [javac] hm.put(new Double((BondTools.giveAngleFromMiddle(atom, parent, ((IAtom) chiralNeighbours.get(i))))), Integer.valueOf(i)); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 10 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smiles.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smiles-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/smiles [delete] Deleting directory /build/cdk-1.2.10/build/smiles checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's sdg module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/sdg [mkdir] Created dir: /build/cdk-1.2.10/build/sdg [copy] Copying 6 files to /build/cdk-1.2.10/build/src/sdg [javac] Compiling 6 source files to /build/cdk-1.2.10/build/sdg [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/sdg/org/openscience/cdk/layout/AtomPlacer.java:887: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] ac.getAtom(f).setProperty("Weight", new Integer(weights[f])); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-sdg.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-sdg-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/sdg [delete] Deleting directory /build/cdk-1.2.10/build/sdg checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's inchi module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/inchi [mkdir] Created dir: /build/cdk-1.2.10/build/inchi [copy] Copying 3 files to /build/cdk-1.2.10/build/src/inchi [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-inchi.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-inchi-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/inchi [delete] Deleting directory /build/cdk-1.2.10/build/inchi checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's libiocml module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/libiocml [mkdir] Created dir: /build/cdk-1.2.10/build/libiocml [copy] Copying 4 files to /build/cdk-1.2.10/build/src/libiocml [javac] Compiling 1 source file to /build/cdk-1.2.10/build/libiocml [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiocml.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiocml-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/libiocml [delete] Deleting directory /build/cdk-1.2.10/build/libiocml checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's control module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/control [mkdir] Created dir: /build/cdk-1.2.10/build/control [copy] Copying 5 files to /build/cdk-1.2.10/build/src/control [javac] Compiling 5 source files to /build/cdk-1.2.10/build/control [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-control.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-control-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/control [delete] Deleting directory /build/cdk-1.2.10/build/control checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's extra module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/extra [mkdir] Created dir: /build/cdk-1.2.10/build/extra [copy] Copying 79 files to /build/cdk-1.2.10/build/src/extra [javac] Compiling 79 source files to /build/cdk-1.2.10/build/extra [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/config/elements/ElementPTReader.java:91: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/config/elements/ElementPTReader.java:104: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/INChIReader.java:134: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("gnu.xml.aelfred2.XmlReader"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/INChIReader.java:147: warning: [deprecation] newInstance() in Class has been deprecated [javac] loadClass("org.apache.xerces.parsers.SAXParser"). [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:193: warning: [deprecation] Double(String) in Double has been deprecated [javac] d[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:200: warning: [deprecation] Double(String) in Double has been deprecated [javac] d[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:201: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] a_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:202: warning: [deprecation] Double(String) in Double has been deprecated [javac] a[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:208: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] d_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:209: warning: [deprecation] Double(String) in Double has been deprecated [javac] d[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:210: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] a_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:211: warning: [deprecation] Double(String) in Double has been deprecated [javac] a[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:212: warning: [deprecation] Integer(String) in Integer has been deprecated [javac] da_atom[i] = new Integer(tokenizer.nextToken()) -1; [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/io/ZMatrixReader.java:213: warning: [deprecation] Double(String) in Double has been deprecated [javac] da[i] = new Double(tokenizer.nextToken()); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/protein/ProteinPocketFinder.java:427: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] + (int) root.z, new Integer(1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/extra/org/openscience/cdk/validate/BasicValidator.java:321: warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been deprecated [javac] int bos = (int)molecule.getBondOrderSum(atom); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 20 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-extra.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-extra-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/extra [delete] Deleting directory /build/cdk-1.2.10/build/extra checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's reaction module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/reaction [mkdir] Created dir: /build/cdk-1.2.10/build/reaction [copy] Copying 54 files to /build/cdk-1.2.10/build/src/reaction [javac] Compiling 54 source files to /build/cdk-1.2.10/build/reaction [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/reaction/org/openscience/cdk/reaction/ReactionEngine.java:86: warning: [deprecation] newInstance() in Class has been deprecated [javac] mechanism = (IReactionMechanism) this.getClass().getClassLoader().loadClass(mechanismName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/reaction/org/openscience/cdk/reaction/ReactionEngine.java:122: warning: [deprecation] newInstance() in Class has been deprecated [javac] IParameterReact ipc = (IParameterReact) this.getClass().getClassLoader().loadClass(paramName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] 6 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-reaction.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-reaction-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/reaction [delete] Deleting directory /build/cdk-1.2.10/build/reaction checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's pdbcml module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/pdbcml [mkdir] Created dir: /build/cdk-1.2.10/build/pdbcml [copy] Copying 1 file to /build/cdk-1.2.10/build/src/pdbcml [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdbcml.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pdbcml-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/pdbcml [delete] Deleting directory /build/cdk-1.2.10/build/pdbcml checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's libiomd module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/libiomd [mkdir] Created dir: /build/cdk-1.2.10/build/libiomd [copy] Copying 5 files to /build/cdk-1.2.10/build/src/libiomd [javac] Compiling 4 source files to /build/cdk-1.2.10/build/libiomd [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/libiomd/org/openscience/cdk/libio/md/MDMolecule.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiomd.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-libiomd-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/libiomd [delete] Deleting directory /build/cdk-1.2.10/build/libiomd checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's charges module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/charges [mkdir] Created dir: /build/cdk-1.2.10/build/charges [copy] Copying 10 files to /build/cdk-1.2.10/build/src/charges [javac] Compiling 10 source files to /build/cdk-1.2.10/build/charges [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/charges/org/openscience/cdk/charges/AtomTypeCharges.java:132: warning: [deprecation] Double(double) in Double has been deprecated [javac] ac.getAtom(i).setCharge(new Double(ac.getAtom(i).getFormalCharge())); [javac] ^ [javac] /build/cdk-1.2.10/build/src/charges/org/openscience/cdk/charges/InductivePartialCharges.java:112: warning: [deprecation] Double(double) in Double has been deprecated [javac] atoms[a].setProperty("InductivePartialCharge", new Double(pCh[a + (s * atoms.length)])); [javac] ^ [javac] /build/cdk-1.2.10/build/src/charges/org/openscience/cdk/charges/InductivePartialCharges.java:113: warning: [deprecation] Double(double) in Double has been deprecated [javac] atoms[a].setProperty("EffectiveAtomicElectronegativity", new Double(ElEn[a + (s * atoms.length)])); [javac] ^ [javac] 7 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-charges.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-charges-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/charges [delete] Deleting directory /build/cdk-1.2.10/build/charges checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's smarts module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: true [mkdir] Created dir: /build/cdk-1.2.10/build/src/smarts [mkdir] Created dir: /build/cdk-1.2.10/build/smarts [copy] Copying 84 files to /build/cdk-1.2.10/build/src/smarts [javac] Compiling 84 source files to /build/cdk-1.2.10/build/smarts [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: /build/cdk-1.2.10/build/src/smarts/org/openscience/cdk/isomorphism/matchers/smarts/SmallestRingAtom.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [copy] Copying 1 file to /build/cdk-1.2.10/build [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smarts.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-smarts-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/smarts [delete] Deleting directory /build/cdk-1.2.10/build/smarts checkPlatforms: check: dist.init: compile-needed-test: compile-module: checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsar module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: true [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsar [mkdir] Created dir: /build/cdk-1.2.10/build/qsar [copy] Copying 30 files to /build/cdk-1.2.10/build/src/qsar [javac] Compiling 25 source files to /build/cdk-1.2.10/build/qsar [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:115: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.rms = V2M.VectorToMatrix(rms, ncase, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:116: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.xscores = V2M.VectorToMatrix(xscores, nobs, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:117: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.yscores = V2M.VectorToMatrix(yscores, nobs, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:118: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.yload = V2M.VectorToMatrix(yload, npvar, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:119: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.xload = V2M.VectorToMatrix(xload, nvar, maxncomp); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:120: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.ypred = V2M.VectorToCube(ypred, ncase, nobs, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:121: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.B = V2M.VectorToCube(B, ncase, nvar, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:147: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.rms = V2M.VectorToMatrix(rms, ncase, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:148: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.rmssd = V2M.VectorToMatrix(rmssd, ncase, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:149: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.r2 = V2M.VectorToMatrix(r2, ncase, npvar);; [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R/PLSRegressionModelFit.java:150: warning: [deprecation] V2M in org.openscience.cdk.qsar.model.R has been deprecated [javac] this.ypred = V2M.VectorToCube(ypred, ncase, nobs, npvar); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/RModel.java:536: warning: [deprecation] finalize() in Object has been deprecated [javac] protected void finalize() { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:149: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("rang", new Double(0.7)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:150: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("decay", new Double(0.0)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:155: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("abstol", new Double(1.0e-4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:156: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.params.put("reltol", new Double(1.0e-8)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:229: warning: [deprecation] Double(double) in Double has been deprecated [javac] yy[i][0] = new Double(y[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:231: warning: [deprecation] Double(double) in Double has been deprecated [javac] xx[i][j] = new Double(x[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:284: warning: [deprecation] Double(double) in Double has been deprecated [javac] xx[i][j] = new Double(x[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/CNNRegressionModel.java:289: warning: [deprecation] Double(double) in Double has been deprecated [javac] yy[i][j] = new Double(y[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:179: warning: [deprecation] Double(double) in Double has been deprecated [javac] y[i] = new Double(yy[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:180: warning: [deprecation] Double(double) in Double has been deprecated [javac] weights[i] = new Double(1.0); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:184: warning: [deprecation] Double(double) in Double has been deprecated [javac] x[i][j] = new Double(xx[i][j]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:241: warning: [deprecation] Double(double) in Double has been deprecated [javac] y[i] = new Double(yy[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:242: warning: [deprecation] Double(double) in Double has been deprecated [javac] wts[i] = new Double(weights[i]); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsar/org/openscience/cdk/qsar/model/R2/LinearRegressionModel.java:246: warning: [deprecation] Double(double) in Double has been deprecated [javac] x[i][j] = new Double(xx[i][j]); [javac] ^ [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 30 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsar.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsar-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsar [delete] Deleting directory /build/cdk-1.2.10/build/qsar checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's ionpot module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/ionpot [mkdir] Created dir: /build/cdk-1.2.10/build/ionpot [copy] Copying 1 file to /build/cdk-1.2.10/build/src/ionpot [javac] Compiling 1 source file to /build/cdk-1.2.10/build/ionpot [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ionpot.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-ionpot-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/ionpot [delete] Deleting directory /build/cdk-1.2.10/build/ionpot checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's fingerprint module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/fingerprint [mkdir] Created dir: /build/cdk-1.2.10/build/fingerprint [copy] Copying 7 files to /build/cdk-1.2.10/build/src/fingerprint [javac] Compiling 7 source files to /build/cdk-1.2.10/build/fingerprint [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-fingerprint.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-fingerprint-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/fingerprint [delete] Deleting directory /build/cdk-1.2.10/build/fingerprint checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's pcore module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/pcore [mkdir] Created dir: /build/cdk-1.2.10/build/pcore [copy] Copying 8 files to /build/cdk-1.2.10/build/src/pcore [javac] Compiling 8 source files to /build/cdk-1.2.10/build/pcore [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pcore.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-pcore-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/pcore [delete] Deleting directory /build/cdk-1.2.10/build/pcore checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsaratomic module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsaratomic [mkdir] Created dir: /build/cdk-1.2.10/build/qsaratomic [copy] Copying 28 files to /build/cdk-1.2.10/build/src/qsaratomic [javac] Compiling 28 source files to /build/cdk-1.2.10/build/qsaratomic [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsaratomic.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsaratomic-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsaratomic [delete] Deleting directory /build/cdk-1.2.10/build/qsaratomic checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarbond module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarbond [mkdir] Created dir: /build/cdk-1.2.10/build/qsarbond [copy] Copying 5 files to /build/cdk-1.2.10/build/src/qsarbond [javac] Compiling 5 source files to /build/cdk-1.2.10/build/qsarbond [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarbond.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarbond-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarbond [delete] Deleting directory /build/cdk-1.2.10/build/qsarbond checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarprotein module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarprotein [mkdir] Created dir: /build/cdk-1.2.10/build/qsarprotein [copy] Copying 2 files to /build/cdk-1.2.10/build/src/qsarprotein [javac] Compiling 2 source files to /build/cdk-1.2.10/build/qsarprotein [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/qsarprotein/org/openscience/cdk/qsar/descriptors/protein/TaeAminoAcidDescriptor.java:161: warning: [deprecation] Double(String) in Double has been deprecated [javac] for (int j = 1; j < components.length; j++) data[j - 1] = new Double(components[j]); [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/qsarprotein/org/openscience/cdk/qsar/descriptors/protein/TaeAminoAcidDescriptor.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 5 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarprotein.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarprotein-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarprotein [delete] Deleting directory /build/cdk-1.2.10/build/qsarprotein checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarcml module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarcml [mkdir] Created dir: /build/cdk-1.2.10/build/qsarcml [copy] Copying 1 file to /build/cdk-1.2.10/build/src/qsarcml [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarcml.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarcml-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarcml [delete] Deleting directory /build/cdk-1.2.10/build/qsarcml checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarmolecular module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: true [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarmolecular [mkdir] Created dir: /build/cdk-1.2.10/build/qsarmolecular [copy] Copying 44 files to /build/cdk-1.2.10/build/src/qsarmolecular [javac] Compiling 44 source files to /build/cdk-1.2.10/build/qsarmolecular [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/DescriptorEngine.java:685: warning: [deprecation] newInstance() in Class has been deprecated [javac] IDescriptor descriptor = (IDescriptor) this.getClass().getClassLoader().loadClass(descriptorName).newInstance(); [javac] ^ [javac] where T is a type-variable: [javac] T extends Object declared in class Class [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/KappaShapeIndicesDescriptor.java:174: warning: [deprecation] Double(double) in Double has been deprecated [javac] if (!singlePaths.contains(new Double(bond1))) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/KappaShapeIndicesDescriptor.java:181: warning: [deprecation] Double(double) in Double has been deprecated [javac] if (!singlePaths.contains(new Double(bond2))) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/KappaShapeIndicesDescriptor.java:196: warning: [deprecation] Double(double) in Double has been deprecated [javac] if (!singlePaths.contains(new Double(bond3))) { [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:101: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+0+0+0+0+3+0+0", new Double(3.24)); // 1 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:102: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+3.0+2+0+0+0+0+1+1+0", new Double(12.36)); // 2 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:103: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+3.0+3.0+1+0+0+0+0+0+0+1", new Double(23.79)); // 3 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:104: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+5.0+3+0+0+0+0+1+2+0", new Double(11.68)); // 4 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:105: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+3.0+5.0+2+0+0+0+0+0+1+1", new Double(13.6)); // 5 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:106: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+0+0+0+1+3+0+0", new Double(3.01)); // 6 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:107: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+1+0+0+0+3+0+0", new Double(12.03)); // 7 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:108: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+1+0+0+1+3+0+0", new Double(21.94)); // 8 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:109: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+3.0+2+1+0+0+0+1+1+0", new Double(23.85)); //9 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:110: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+3.0+3+2+0+0+0+3+0+0", new Double(26.02)); // 10 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:111: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+0+1+0+0+4+0+0", new Double(0.0)); //11 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:112: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+4.0+3+0+1+0+0+2+1+0", new Double(3.01)); //12 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:113: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+3.0+4.0+2+0+1+0+0+1+0+1", new Double(4.36)); //13 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:114: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+1+1+0+0+4+0+0", new Double(4.44)); //14 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:115: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+4.0+3+1+1+0+0+2+1+0", new Double(13.97)); //15 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:116: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+2+1+0+0+4+0+0", new Double(16.61)); //16 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:117: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+4.0+3+2+1+0+0+2+1+0", new Double(25.59)); //17 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:118: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.0+4.0+4+3+1+0+0+4+0+0", new Double(27.64)); //18 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:119: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+3.0+2+0+0+2+0+0+0+0", new Double(12.89)); //19 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:120: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.5+3+0+0+3+0+0+0+0", new Double(4.41)); //20 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:121: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+0+0+2+0+1+0+0", new Double(4.93)); //21 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:122: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+2.0+5.0+3+0+0+2+0+0+1+0", new Double(8.39)); //22 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:123: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+1+0+2+0+1+0+0", new Double(15.79)); //23 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:124: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.5+3+0+1+3+0+0+0+0", new Double(4.1)); //24 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:125: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+0+1+2+0+1+0+0", new Double(3.88)); //25 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:126: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("N+1.5+4.0+3+1+1+2+0+1+0+0", new Double(14.14)); //26 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:128: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+2.0+2+0+0+0+0+2+0+0", new Double(9.23)); //27 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:129: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+2.0+2+0+0+0+1+2+0+0", new Double(12.53)); //28 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:130: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+2.0+2.0+1+0+0+0+0+0+1+0", new Double(17.07)); //29 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:131: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+1.0+1+0+-1+0+0+1+0+0", new Double(23.06)); //30 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:132: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.0+2.0+2+1+0+0+0+2+0+0", new Double(20.23)); //31 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:133: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("O+1.5+3.0+2+0+0+2+0+0+0+0", new Double(13.14)); //32 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:135: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+1.0+2.0+2+0+0+0+0+2+0+0", new Double(25.3)); //33 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:136: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+2.0+1+0+0+0+0+0+1+0", new Double(32.09)); //34 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:137: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+4.0+3+0+0+0+0+2+1+0", new Double(19.21)); //35 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:138: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+6.0+4+0+0+0+0+2+2+0", new Double(8.38)); //36 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:139: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+1.0+2.0+2+1+0+0+0+2+0+0", new Double(38.8)); //37 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:140: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+1.5+3.0+2+0+0+2+0+0+0+0", new Double(28.24)); //38 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:141: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("S+2.0+5.0+3+0+0+2+0+0+1+0", new Double(21.7)); //39 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:143: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+1.0+3.0+3+0+0+0+0+3+0+0", new Double(13.59)); //40 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:144: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+2.0+3.0+3+0+0+0+0+1+1+0", new Double(34.14)); //41 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:145: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+2.0+5.0+4+0+0+0+0+3+1+0", new Double(9.81)); //42 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/TPSADescriptor.java:146: warning: [deprecation] Double(double) in Double has been deprecated [javac] map.put("P+2.0+5.0+4+1+0+0+0+3+1+0", new Double(23.47)); //43 [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:145: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("H", new Double(0.084)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:146: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("B", new Double(0.900)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:147: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("C", new Double(1.000)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:148: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("N", new Double(1.166)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:149: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("O", new Double(1.332)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:150: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("F", new Double(1.582)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:151: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Al", new Double(2.246)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:152: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Si", new Double(2.339)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:153: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("P", new Double(2.579)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:154: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("S", new Double(2.670)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:155: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Cl", new Double(2.952)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:156: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Fe", new Double(4.650)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:157: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Co", new Double(4.907)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:158: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Ni", new Double(4.887)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:159: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Cu", new Double(5.291)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:160: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Zn", new Double(5.445)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:161: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Br", new Double(6.653)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:162: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("Sn", new Double(9.884)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:163: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashatwt.put("I", new Double(10.566)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:165: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("H", new Double(0.299)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:166: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("B", new Double(0.796)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:167: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("C", new Double(1.000)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:168: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("N", new Double(0.695)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:169: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("O", new Double(0.512)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:170: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("F", new Double(0.410)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:171: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Al", new Double(1.626)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:172: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Si", new Double(1.424)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:173: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("P", new Double(1.181)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:174: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("S", new Double(1.088)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:175: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Cl", new Double(1.035)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:176: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Fe", new Double(1.829)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:177: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Co", new Double(1.561)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:178: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Ni", new Double(0.764)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:179: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Cu", new Double(0.512)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:180: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Zn", new Double(1.708)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:181: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Br", new Double(1.384)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:182: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("Sn", new Double(2.042)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:183: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hashvdw.put("I", new Double(1.728)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:185: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("H", new Double(0.944)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:186: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("B", new Double(0.828)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:187: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("C", new Double(1.000)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:188: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("N", new Double(1.163)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:189: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("O", new Double(1.331)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:190: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("F", new Double(1.457)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:191: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("Al", new Double(0.624)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:192: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("Si", new Double(0.779)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:193: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("P", new Double(0.916)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:194: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("S", new Double(1.077)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java:195: warning: [deprecation] Double(double) in Double has been deprecated [javac] this.hasheneg.put("Cl", new Double(1.265)); [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/qsarmolecular/org/openscience/cdk/qsar/descriptors/molecular/WHIMDescriptor.java has additional uses or overrides of a deprecated API. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 100 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarmolecular.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarmolecular-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarmolecular [delete] Deleting directory /build/cdk-1.2.10/build/qsarmolecular checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's forcefield module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/forcefield [mkdir] Created dir: /build/cdk-1.2.10/build/forcefield [copy] Copying 23 files to /build/cdk-1.2.10/build/src/forcefield [javac] Compiling 23 source files to /build/cdk-1.2.10/build/forcefield [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/ForceFieldConfigurator.java:283: warning: [deprecation] Double(double) in Double has been deprecated [javac] atom.setProperty("MAX_BOND_ORDER", new Double(molecule.getMaximumBondOrder(atom).ordinal()+1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:101: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:103: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:110: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:113: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:120: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:123: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:130: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:133: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:140: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:143: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:150: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:153: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:160: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:163: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:170: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:173: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:218: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:221: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:228: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:231: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:238: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:241: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:248: warning: [deprecation] Double(String) in Double has been deprecated [javac] double value1 = new Double(svalue).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:251: warning: [deprecation] Double(double) in Double has been deprecated [javac] parameterSet.put(key, new Double(value1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:284: warning: [deprecation] Double(String) in Double has been deprecated [javac] mass = new Double(sam).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:316: warning: [deprecation] Double(String) in Double has been deprecated [javac] double epsi = new Double(sepsi).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:317: warning: [deprecation] Double(String) in Double has been deprecated [javac] double radius = new Double(sradius).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:318: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(radius)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:319: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(epsi)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:343: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:344: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:345: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:346: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:369: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:370: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:371: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:372: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:395: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:396: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:397: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:398: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:421: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:422: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:423: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:424: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:450: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:451: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:452: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:453: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va4 = new Double(value4).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:454: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:455: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:456: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:457: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:462: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:463: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:464: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:465: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:492: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:493: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:494: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:495: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va4 = new Double(value4).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:496: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:497: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:498: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:499: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:525: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:526: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:527: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:528: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va4 = new Double(value4).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:529: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:530: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:531: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:532: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va4)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:553: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:554: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:575: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:576: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:581: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:614: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:615: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:616: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:617: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:618: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:619: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:624: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:625: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:626: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:658: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:659: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va2 = new Double(value2).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:660: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va3 = new Double(value3).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:661: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:662: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va2)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:663: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va3)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:684: warning: [deprecation] Double(String) in Double has been deprecated [javac] double va1 = new Double(value1).doubleValue(); [javac] ^ [javac] /build/cdk-1.2.10/build/src/forcefield/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java:685: warning: [deprecation] Double(double) in Double has been deprecated [javac] data.add(new Double(va1)); [javac] ^ [javac] Note: Some input files additionally use or override a deprecated API. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 100 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-forcefield.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-forcefield-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/forcefield [delete] Deleting directory /build/cdk-1.2.10/build/forcefield checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's qsarionpot module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: ${module.libdepends.present} [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/qsarionpot [mkdir] Created dir: /build/cdk-1.2.10/build/qsarionpot [copy] Copying 3 files to /build/cdk-1.2.10/build/src/qsarionpot [javac] Compiling 3 source files to /build/cdk-1.2.10/build/qsarionpot [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarionpot.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-qsarionpot-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/qsarionpot [delete] Deleting directory /build/cdk-1.2.10/build/qsarionpot checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's builder3d module from src/main... [echo] Datafiles defined: true [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/builder3d [mkdir] Created dir: /build/cdk-1.2.10/build/builder3d [copy] Copying 5 files to /build/cdk-1.2.10/build/src/builder3d [javac] Compiling 5 source files to /build/cdk-1.2.10/build/builder3d [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3d.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3d-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/builder3d [delete] Deleting directory /build/cdk-1.2.10/build/builder3d checkPlatforms: check: dist.init: compile-needed-test: compile-module: [echo] Compiling classes for CDK's builder3dtools module from src/main... [echo] Datafiles defined: ${module.datafiles.present} [echo] Extra files defined: ${module.extrafiles.present} [echo] CDK dependencies defined: true [echo] Library dependencies defined: true [echo] Developer Library dependencies defined: ${module.devellibdepends.present} [echo] Autogenerated files specified: ${module.autogenerated.present} [mkdir] Created dir: /build/cdk-1.2.10/build/src/builder3dtools [mkdir] Created dir: /build/cdk-1.2.10/build/builder3dtools [copy] Copying 1 file to /build/cdk-1.2.10/build/src/builder3dtools [javac] Compiling 1 source file to /build/cdk-1.2.10/build/builder3dtools [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:440: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] timings.put(bin, new Integer((((Integer)timings.get(bin)).intValue()) + 1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:442: warning: [deprecation] Integer(int) in Integer has been deprecated [javac] timings.put(bin, new Integer(1)); [javac] ^ [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:555: warning: [deprecation] Boolean(String) in Boolean has been deprecated [javac] args[1], new Boolean(args[2]).booleanValue(), new Boolean( [javac] ^ [javac] /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java:555: warning: [deprecation] Boolean(String) in Boolean has been deprecated [javac] args[1], new Boolean(args[2]).booleanValue(), new Boolean( [javac] ^ [javac] Note: /build/cdk-1.2.10/build/src/builder3dtools/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java uses unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 8 warnings [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3dtools.jar [jar] Building jar: /build/cdk-1.2.10/dist/jar/cdk-builder3dtools-sources.jar [delete] Deleting directory /build/cdk-1.2.10/build/src/builder3dtools [delete] Deleting directory /build/cdk-1.2.10/build/builder3dtools BUILD SUCCESSFUL Total time: 2 minutes 12 seconds make[1]: Leaving directory '/build/cdk-1.2.10' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with javahelper dh_testroot dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/cdk-1.2.10' dh_install for COMPONENT in annotation atomtype builder3d builder3dtools charges control core data dict diff extra fingerprint forcefield formula interfaces ioformats io ionpot isomorphism libiocml libiomd nonotify pcore pdb qm qsar qsaratomic qsarbond qsarionpot qsarmolecular qsarprotein reaction render sdg smarts smiles standard structgen valencycheck; do \ install -m 644 dist/jar/cdk-$COMPONENT.jar \ debian/libcdk-java/usr/share/java/cdk-$COMPONENT-1.2.10.jar; \ ln -s cdk-$COMPONENT-1.2.10.jar \ debian/libcdk-java/usr/share/java/cdk-$COMPONENT.jar; \ if [ $COMPONENT != "core" ]; then \ echo usr/share/java/cdk-$COMPONENT.jar cdk-core.jar >> debian/classpath; \ else \ echo usr/share/java/cdk-$COMPONENT.jar jama.jar jgrapht.jar log4j-1.2.jar xercesImpl.jar vecmath.jar xom.jar >> debian/classpath; \ fi \ done make[1]: Leaving directory '/build/cdk-1.2.10' jh_installjavadoc dh_installdocs dh_installchangelogs dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_depends dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libcdk-java' in '../libcdk-java_1.2.10-7_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cdk_1.2.10-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5731 and its subdirectories I: Current time: Tue May 5 13:41:51 -12 2020 I: pbuilder-time-stamp: 1588729311