I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 8 20:58:09 +14 2020 I: pbuilder-time-stamp: 1596869889 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macsyfinder_1.0.5-2.dsc] I: copying [./macsyfinder_1.0.5.orig.tar.gz] I: copying [./macsyfinder_1.0.5-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 8 02:08:23 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./macsyfinder_1.0.5-2.dsc dpkg-source: info: extracting macsyfinder in macsyfinder-1.0.5 dpkg-source: info: unpacking macsyfinder_1.0.5.orig.tar.gz dpkg-source: info: unpacking macsyfinder_1.0.5-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9933/tmp/hooks/D01_modify_environment starting debug: Running on odxu4a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/9933/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/9933/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=0fad50e2232d4158ac42a0eed6b94fa9 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=9933 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Hd4TFRl659/pbuilderrc_2lO8 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Hd4TFRl659/b2 --logfile b2/build.log macsyfinder_1.0.5-2.dsc' SUDO_GID=114 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 5.7.0-0.bpo.2-armmp-lpae #1 SMP Debian 5.7.10-1~bpo10+1 (2020-07-30) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash -rwxr-xr-x 1 root root 71648 Mar 1 2019 date -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd -rwxr-xr-x 1 root root 55672 Mar 1 2019 df -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 18260 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln -rwxr-xr-x 1 root root 34932 Jul 27 2018 login -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 10 2019 more -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 8 20:58 sh -> bash lrwxrwxrwx 1 root root 4 Aug 6 22:26 sh.distrib -> dash -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty -rwsr-xr-x 1 root root 42472 Jan 10 2019 su -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch -rwxr-xr-x 1 root root 18260 Mar 1 2019 true -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/9933/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python, python3-sphinx, texlive-latex-recommended, texlive-generic-extra, texlive-latex-extra, texlive-fonts-recommended, latexmk, graphviz dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-generic-extra; however: Package texlive-generic-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on latexmk; however: Package latexmk is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} latexmk{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdatrie1{a} libdbus-1-3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblcms2-2{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libsm6{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxdot4{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} poppler-data{a} preview-latex-style{a} python{a} python-babel-localedata{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-six{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-generic-extra{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: atril curl dbus evince fonts-droid-fallback fonts-liberation ghostscript gv javascript-common krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl lmodern lynx mupdf okular python3-pil ruby shared-mime-info tex-gyre tipa tk viewpdf.app wget x11-utils x11-xserver-utils xdg-user-dirs xpdf zathura-pdf-poppler zathura-ps 0 packages upgraded, 188 newly installed, 0 to remove and 0 not upgraded. Need to get 161 MB of archives. After unpacking 535 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf poppler-data all 0.4.9-2 [1473 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libpython3.7-minimal armhf 3.7.3-2+deb10u2 [582 kB] Get: 24 http://deb.debian.org/debian buster/main armhf python3.7-minimal armhf 3.7.3-2+deb10u2 [1466 kB] Get: 25 http://deb.debian.org/debian buster/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libmpdec2 armhf 2.4.2-2 [69.3 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libpython3.7-stdlib armhf 3.7.3-2+deb10u2 [1660 kB] Get: 28 http://deb.debian.org/debian buster/main armhf python3.7 armhf 3.7.3-2+deb10u2 [330 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main armhf python3 armhf 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main armhf sgml-base all 1.29 [14.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 33 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 34 http://deb.debian.org/debian buster/main armhf tex-common all 6.11 [53.1 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 37 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 38 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 40 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 41 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 42 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 43 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 44 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 45 http://deb.debian.org/debian buster/main armhf openssl armhf 1.1.1d-0+deb10u3 [818 kB] Get: 46 http://deb.debian.org/debian buster/main armhf ca-certificates all 20190110 [157 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 48 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 51 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 53 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 59 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 60 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 61 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 62 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 63 http://deb.debian.org/debian buster/main armhf python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 64 http://deb.debian.org/debian buster/main armhf python3-distutils all 3.7.3-1 [142 kB] Get: 65 http://deb.debian.org/debian buster/main armhf dh-python all 3.20190308 [99.3 kB] Get: 66 http://deb.debian.org/debian buster/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 67 http://deb.debian.org/debian buster/main armhf docutils-common all 0.14+dfsg-4 [167 kB] Get: 68 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u1 [322 kB] Get: 70 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 71 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 73 http://deb.debian.org/debian buster/main armhf fontconfig armhf 2.13.1-2 [404 kB] Get: 74 http://deb.debian.org/debian buster/main armhf fonts-lmodern all 2.004.5-6 [4539 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 76 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 78 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 79 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1 [298 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1 [698 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 82 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 83 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 84 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4 [616 kB] Get: 86 http://deb.debian.org/debian buster/main armhf libcdt5 armhf 2.40.1-6 [58.1 kB] Get: 87 http://deb.debian.org/debian buster/main armhf libcgraph6 armhf 2.40.1-6 [77.3 kB] Get: 88 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [112 kB] Get: 89 http://deb.debian.org/debian buster/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 90 http://deb.debian.org/debian buster/main armhf libwebp6 armhf 0.6.1-2 [229 kB] Get: 91 http://deb.debian.org/debian buster/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u1 [252 kB] Get: 92 http://deb.debian.org/debian buster/main armhf libxpm4 armhf 1:3.5.12-1 [44.0 kB] Get: 93 http://deb.debian.org/debian buster/main armhf libgd3 armhf 2.2.5-5.2 [117 kB] Get: 94 http://deb.debian.org/debian buster/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4 [137 kB] Get: 95 http://deb.debian.org/debian buster/main armhf libltdl7 armhf 2.4.6-9 [387 kB] Get: 96 http://deb.debian.org/debian buster/main armhf libfribidi0 armhf 1.0.5-3.1+deb10u1 [61.7 kB] Get: 97 http://deb.debian.org/debian buster/main armhf libthai-data all 0.1.28-2 [170 kB] Get: 98 http://deb.debian.org/debian buster/main armhf libdatrie1 armhf 0.2.12-2 [35.8 kB] Get: 99 http://deb.debian.org/debian buster/main armhf libthai0 armhf 0.1.28-2 [50.7 kB] Get: 100 http://deb.debian.org/debian buster/main armhf libpango-1.0-0 armhf 1.42.4-8~deb10u1 [169 kB] Get: 101 http://deb.debian.org/debian buster/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB] Get: 102 http://deb.debian.org/debian buster/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB] Get: 103 http://deb.debian.org/debian buster/main armhf libpangoft2-1.0-0 armhf 1.42.4-8~deb10u1 [62.7 kB] Get: 104 http://deb.debian.org/debian buster/main armhf libpangocairo-1.0-0 armhf 1.42.4-8~deb10u1 [52.2 kB] Get: 105 http://deb.debian.org/debian buster/main armhf libpathplan4 armhf 2.40.1-6 [61.3 kB] Get: 106 http://deb.debian.org/debian buster/main armhf libxdot4 armhf 2.40.1-6 [55.4 kB] Get: 107 http://deb.debian.org/debian buster/main armhf libgvc6 armhf 2.40.1-6 [556 kB] Get: 108 http://deb.debian.org/debian buster/main armhf libgvpr2 armhf 2.40.1-6 [189 kB] Get: 109 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 110 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB] Get: 111 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get: 112 http://deb.debian.org/debian buster/main armhf liblab-gamut1 armhf 2.40.1-6 [220 kB] Get: 113 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 114 http://deb.debian.org/debian buster/main armhf libxt6 armhf 1:1.1.5-1+b3 [159 kB] Get: 115 http://deb.debian.org/debian buster/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 116 http://deb.debian.org/debian buster/main armhf libxaw7 armhf 2:1.0.13-1+b2 [167 kB] Get: 117 http://deb.debian.org/debian buster/main armhf graphviz armhf 2.40.1-6 [518 kB] Get: 118 http://deb.debian.org/debian buster/main armhf libpaper1 armhf 1.1.28 [20.5 kB] Get: 119 http://deb.debian.org/debian buster/main armhf libpaper-utils armhf 1.1.28 [17.6 kB] Get: 120 http://deb.debian.org/debian buster/main armhf libkpathsea6 armhf 2018.20181218.49446-1 [157 kB] Get: 121 http://deb.debian.org/debian buster/main armhf libptexenc1 armhf 2018.20181218.49446-1 [58.1 kB] Get: 122 http://deb.debian.org/debian buster/main armhf libsynctex2 armhf 2018.20181218.49446-1 [67.4 kB] Get: 123 http://deb.debian.org/debian buster/main armhf libtexlua52 armhf 2018.20181218.49446-1 [86.7 kB] Get: 124 http://deb.debian.org/debian buster/main armhf libtexlua53 armhf 2018.20181218.49446-1 [97.8 kB] Get: 125 http://deb.debian.org/debian buster/main armhf libtexluajit2 armhf 2018.20181218.49446-1 [201 kB] Get: 126 http://deb.debian.org/debian buster/main armhf t1utils armhf 1.41-3 [54.4 kB] Get: 127 http://deb.debian.org/debian buster/main armhf libbrotli1 armhf 1.0.7-2 [259 kB] Get: 128 http://deb.debian.org/debian buster/main armhf libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 129 http://deb.debian.org/debian buster/main armhf libavahi-common-data armhf 0.7-4+b1 [122 kB] Get: 130 http://deb.debian.org/debian buster/main armhf libavahi-common3 armhf 0.7-4+b1 [51.1 kB] Get: 131 http://deb.debian.org/debian buster/main armhf libdbus-1-3 armhf 1.12.20-0+deb10u1 [191 kB] Get: 132 http://deb.debian.org/debian buster/main armhf libavahi-client3 armhf 0.7-4+b1 [54.5 kB] Get: 133 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 134 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 135 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 136 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 137 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 138 http://deb.debian.org/debian buster/main armhf libcups2 armhf 2.2.10-6+deb10u3 [291 kB] Get: 139 http://deb.debian.org/debian buster/main armhf libcupsimage2 armhf 2.2.10-6+deb10u3 [130 kB] Get: 140 http://deb.debian.org/debian buster/main armhf libidn11 armhf 1.33-2.2 [113 kB] Get: 141 http://deb.debian.org/debian buster/main armhf libijs-0.35 armhf 0.35-14 [16.7 kB] Get: 142 http://deb.debian.org/debian buster/main armhf libjbig2dec0 armhf 0.16-1 [54.5 kB] Get: 143 http://deb.debian.org/debian buster/main armhf liblcms2-2 armhf 2.9-3 [119 kB] Get: 144 http://deb.debian.org/debian buster/main armhf libopenjp2-7 armhf 2.3.0-2+deb10u1 [143 kB] Get: 145 http://deb.debian.org/debian buster/main armhf libgs9 armhf 9.27~dfsg-2+deb10u3 [1900 kB] Get: 146 http://deb.debian.org/debian buster/main armhf libharfbuzz-icu0 armhf 2.3.1-1 [833 kB] Get: 147 http://deb.debian.org/debian buster/main armhf libpotrace0 armhf 1.15-1 [23.9 kB] Get: 148 http://deb.debian.org/debian buster/main armhf libteckit0 armhf 2.5.8+ds2-5 [246 kB] Get: 149 http://deb.debian.org/debian buster/main armhf libwoff1 armhf 1.0.2-1 [35.8 kB] Get: 150 http://deb.debian.org/debian buster/main armhf libxi6 armhf 2:1.7.9-1 [78.4 kB] Get: 151 http://deb.debian.org/debian buster/main armhf libxxhash0 armhf 0.6.5-2 [10.2 kB] Get: 152 http://deb.debian.org/debian buster/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB] Get: 153 http://deb.debian.org/debian buster/main armhf texlive-binaries armhf 2018.20181218.49446-1 [8656 kB] Get: 154 http://deb.debian.org/debian buster/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 155 http://deb.debian.org/debian buster/main armhf texlive-base all 2018.20190227-2 [19.7 MB] Get: 156 http://deb.debian.org/debian buster/main armhf texlive-latex-base all 2018.20190227-2 [984 kB] Get: 157 http://deb.debian.org/debian buster/main armhf latexmk all 1:4.61-0.1 [390 kB] Get: 158 http://deb.debian.org/debian buster/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 159 http://deb.debian.org/debian buster/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 160 http://deb.debian.org/debian buster/main armhf libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 161 http://deb.debian.org/debian buster/main armhf preview-latex-style all 11.91-2 [201 kB] Get: 162 http://deb.debian.org/debian buster/main armhf python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 163 http://deb.debian.org/debian buster/main armhf python3-alabaster all 0.7.8-1 [18.4 kB] Get: 164 http://deb.debian.org/debian buster/main armhf python3-pkg-resources all 40.8.0-1 [153 kB] Get: 165 http://deb.debian.org/debian buster/main armhf python3-tz all 2019.1-1 [27.1 kB] Get: 166 http://deb.debian.org/debian buster/main armhf python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 167 http://deb.debian.org/debian buster/main armhf python3-certifi all 2018.8.24-1 [140 kB] Get: 168 http://deb.debian.org/debian buster/main armhf python3-chardet all 3.0.4-3 [80.5 kB] Get: 169 http://deb.debian.org/debian buster/main armhf python3-roman all 2.0.0-3 [8768 B] Get: 170 http://deb.debian.org/debian buster/main armhf python3-docutils all 0.14+dfsg-4 [378 kB] Get: 171 http://deb.debian.org/debian buster/main armhf python3-idna all 2.6-1 [34.3 kB] Get: 172 http://deb.debian.org/debian buster/main armhf python3-imagesize all 1.0.0-1 [4960 B] Get: 173 http://deb.debian.org/debian buster/main armhf python3-markupsafe armhf 1.1.0-1 [14.2 kB] Get: 174 http://deb.debian.org/debian buster/main armhf python3-jinja2 all 2.10-2 [106 kB] Get: 175 http://deb.debian.org/debian buster/main armhf python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 176 http://deb.debian.org/debian buster/main armhf python3-six all 1.12.0-1 [15.7 kB] Get: 177 http://deb.debian.org/debian buster/main armhf python3-packaging all 19.0-1 [20.5 kB] Get: 178 http://deb.debian.org/debian buster/main armhf python3-pygments all 2.3.1+dfsg-1 [594 kB] Get: 179 http://deb.debian.org/debian buster/main armhf python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 180 http://deb.debian.org/debian buster/main armhf python3-requests all 2.21.0-1 [66.9 kB] Get: 181 http://deb.debian.org/debian buster/main armhf sphinx-common all 1.8.4-1 [500 kB] Get: 182 http://deb.debian.org/debian buster/main armhf python3-sphinx all 1.8.4-1 [481 kB] Get: 183 http://deb.debian.org/debian buster/main armhf texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 184 http://deb.debian.org/debian buster/main armhf texlive-plain-generic all 2018.20190227-2 [24.3 MB] Get: 185 http://deb.debian.org/debian buster/main armhf texlive-generic-extra all 2018.20190227-2 [32.2 kB] Get: 186 http://deb.debian.org/debian buster/main armhf texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 187 http://deb.debian.org/debian buster/main armhf texlive-pictures all 2018.20190227-2 [8201 kB] Get: 188 http://deb.debian.org/debian buster/main armhf texlive-latex-extra all 2018.20190227-2 [12.3 MB] Fetched 161 MB in 25s (6439 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:armhf. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_armhf.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_armhf.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:armhf. Preparing to unpack .../14-libreadline7_7.0-5_armhf.deb ... Unpacking libreadline7:armhf (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:armhf. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:armhf. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython2-stdlib:armhf (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:armhf. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython-stdlib:armhf (2.7.16-1) ... Setting up libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20430 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_armhf.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package libpython3.7-minimal:armhf. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u2_armhf.deb ... Unpacking libpython3.7-minimal:armhf (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_armhf.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:armhf (3.7.3-2+deb10u2) ... Setting up libexpat1:armhf (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up lsb-base (10.2019051400) ... Setting up libxau6:armhf (1:1.0.8-1+b2) ... Setting up libkeyutils1:armhf (1.6-6) ... Setting up mime-support (3.62) ... Setting up libtexlua52:armhf (2018.20181218.49446-1) ... Setting up libdatrie1:armhf (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libtexlua53:armhf (2018.20181218.49446-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libijs-0.35:armhf (0.35-14) ... Setting up libtexluajit2:armhf (2018.20181218.49446-1) ... Setting up libbrotli1:armhf (1.0.7-2) ... Setting up liblab-gamut1 (2.40.1-6) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libzzip-0-13:armhf (0.13.62-3.2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:armhf (1.17-3) ... Setting up libgts-0.7-5:armhf (0.7.6+darcs121130-4) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libjbig2dec0:armhf (0.16-1) ... Setting up libidn11:armhf (1.33-2.2) ... Setting up libteckit0:armhf (2.5.8+ds2-5) ... Setting up libpathplan4 (2.40.1-6) ... Setting up libavahi-common-data:armhf (0.7-4+b1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:armhf (1.12.20-0+deb10u1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libfribidi0:armhf (1.0.5-3.1+deb10u1) ... Setting up t1utils (1.41-3) ... Setting up libpng16-16:armhf (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libk5crypto3:armhf (1.17-3) ... Setting up libltdl7:armhf (2.4.6-9) ... Setting up libkpathsea6:armhf (2018.20181218.49446-1) ... Setting up sensible-utils (0.0.12) ... Setting up libxxhash0:armhf (0.6.5-2) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libopenjp2-7:armhf (2.3.0-2+deb10u1) ... Setting up libthai-data (0.1.28-2) ... Setting up sgml-base (1.29) ... Setting up libcdt5 (2.40.1-6) ... Setting up libkrb5-3:armhf (1.17-3) ... Setting up libcgraph6 (2.40.1-6) ... Setting up libtiff5:armhf (4.1.0+git191117-2~deb10u1) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libsynctex2:armhf (2018.20181218.49446-1) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libpotrace0:armhf (1.15-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libpython3.7-stdlib:armhf (3.7.3-2+deb10u2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libwoff1:armhf (1.0.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libavahi-common3:armhf (0.7-4+b1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Setting up libthai0:armhf (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libptexenc1:armhf (2018.20181218.49446-1) ... Setting up libfreetype6:armhf (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-3) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up libgvpr2 (2.40.1-6) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libharfbuzz0b:armhf (2.3.1-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libavahi-client3:armhf (0.7-4+b1) ... Setting up libpython3-stdlib:armhf (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:armhf (2.3.1-1) ... Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libpython2-stdlib:armhf (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (1.1.0-1) ... Setting up python2 (2.7.16-1) ... Setting up python3-tz (2019.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up python3-idna (2.6-1) ... Setting up libxt6:armhf (1:1.1.5-1+b3) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up libcups2:armhf (2.2.10-6+deb10u3) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-imagesize (1.0.0-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxmu6:armhf (2:1.1.2-2+b3) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1) ... Setting up po-debconf (1.0.21) ... Setting up preview-latex-style (11.91-2) ... Setting up libpango-1.0-0:armhf (1.42.4-8~deb10u1) ... Setting up libxaw7:armhf (2:1.0.13-1+b2) ... Setting up libcairo2:armhf (1.16.0-4) ... Setting up libcupsimage2:armhf (2.2.10-6+deb10u3) ... Setting up python3-packaging (19.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-requests (2.21.0-1) ... Setting up libgd3:armhf (2.2.5-5.2) ... Setting up libpangoft2-1.0-0:armhf (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:armhf (1.42.4-8~deb10u1) ... Setting up libgs9:armhf (9.27~dfsg-2+deb10u3) ... Setting up libgvc6 (2.40.1-6) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up graphviz (2.40.1-6) ... Setting up texlive-plain-generic (2018.20190227-2) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up texlive-pictures (2018.20190227-2) ... Setting up texlive-fonts-recommended (2018.20190227-2) ... Setting up texlive-generic-extra (2018.20190227-2) ... Setting up latexmk (1:4.61-0.1) ... Setting up texlive-latex-extra (2018.20190227-2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/macsyfinder-1.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package macsyfinder dpkg-buildpackage: info: source version 1.0.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python2 dh_auto_clean dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_clean: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py clean -a running clean 'build/lib.linux-armv7l-2.7' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ debian/rules override_dh_clean make[1]: Entering directory '/build/macsyfinder-1.0.5' rm -Rf doc/_build rm -f uninstall.cfg rm -f uninstall_files dh_clean make[1]: Leaving directory '/build/macsyfinder-1.0.5' debian/rules build dh build --with python2 dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_configure: This feature will be removed in compat 12. dh_auto_build dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_build: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py build --force running build running build_py creating build creating build/lib.linux-armv7l-2.7 creating build/lib.linux-armv7l-2.7/macsypy copying macsypy/gene.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/database.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/macsypy_error.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/report.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/search_systems.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/config.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/utils.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/registries.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/system_parser.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/search_genes.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/__init__.py -> build/lib.linux-armv7l-2.7/macsypy copying macsypy/system.py -> build/lib.linux-armv7l-2.7/macsypy running build_scripts creating build/scripts-2.7 macsyview not found copying and adjusting bin/macsyfinder -> build/scripts-2.7 changing mode of build/scripts-2.7/macsyfinder from 664 to 775 Unit tests are available. It is _highly_ recommended to run tests now. to run test, run 'python setup.py test -vv' dh_auto_test dh_auto_test: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_test: This feature will be removed in compat 12. create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/macsyfinder-1.0.5' cd doc && make html make[2]: Entering directory '/build/macsyfinder-1.0.5/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.8.4 making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 20 source files that are out of date updating environment: 20 added, 0 changed, 0 removed reading sources... [ 5%] HMMReport reading sources... [ 10%] config reading sources... [ 15%] database reading sources... [ 20%] functioning reading sources... [ 25%] gembase_convention reading sources... [ 30%] gene reading sources... [ 35%] implementation reading sources... [ 40%] index reading sources... [ 45%] input reading sources... [ 50%] installation reading sources... [ 55%] macsypy_error reading sources... [ 60%] macsyview reading sources... [ 65%] outputs reading sources... [ 70%] profile reading sources... [ 75%] quickstart reading sources... [ 80%] search_genes reading sources... [ 85%] search_systems reading sources... [ 90%] system reading sources... [ 95%] system_definition reading sources... [100%] system_parser /build/macsyfinder-1.0.5/macsypy/report.py:docstring of macsypy.report.GeneralHMMReport.extract:3: WARNING: Duplicate ID: "module-macsypy.report". /build/macsyfinder-1.0.5/macsypy/report.py:docstring of macsypy.report.OrderedHMMReport.extract:3: WARNING: Duplicate ID: "module-macsypy.report". /build/macsyfinder-1.0.5/macsypy/report.py:docstring of macsypy.report.GembaseHMMReport.extract:3: WARNING: Duplicate ID: "module-macsypy.report". /build/macsyfinder-1.0.5/macsypy/report.py:docstring of macsypy.report.Hit.get_syst_inter_gene_max_space:3: WARNING: Duplicate ID: "module-macsypy.report". WARNING: autodoc: failed to import module 'config' from module 'macsypy'; the following exception was raised: No module named 'ConfigParser' /build/macsyfinder-1.0.5/macsypy/database.py:docstring of macsypy.database.RepliconDB.get:6: WARNING: Field list ends without a blank line; unexpected unindent. /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Gene.system:3: WARNING: Duplicate ID: "module-macsypy.gene". /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Homolog.is_aligned:3: WARNING: Duplicate ID: "module-macsypy.gene". /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Analog.gene_ref:3: WARNING: Duplicate ID: "module-macsypy.gene". /build/macsyfinder-1.0.5/doc/macsyview.rst:25: WARNING: Bullet list ends without a blank line; unexpected unindent. /build/macsyfinder-1.0.5/doc/macsyview.rst:65: WARNING: Block quote ends without a blank line; unexpected unindent. /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Profile.execute:5: WARNING: Duplicate ID: "module-macsypy.gene". WARNING: autodoc: failed to import module 'search_systems' from module 'macsypy'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 154, in import_module __import__(modname) File "/build/macsyfinder-1.0.5/macsypy/search_systems.py", line 1027 """ ^ SyntaxError: (unicode error) 'unicodeescape' codec can't decode bytes in position 685-686: truncated \uXXXX escape /build/macsyfinder-1.0.5/macsypy/system.py:docstring of macsypy.system.System.multi_loci:3: WARNING: Duplicate ID: "module-macsypy.system". /build/macsyfinder-1.0.5/macsypy/system_parser.py:docstring of macsypy.system_parser.SystemParser.parse:3: WARNING: Definition list ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 5%] HMMReport writing output... [ 10%] config writing output... [ 15%] database writing output... [ 20%] functioning writing output... [ 25%] gembase_convention writing output... [ 30%] gene writing output... [ 35%] implementation writing output... [ 40%] index writing output... [ 45%] input writing output... [ 50%] installation writing output... [ 55%] macsypy_error writing output... [ 60%] macsyview writing output... [ 65%] outputs writing output... [ 70%] profile writing output... [ 75%] quickstart writing output... [ 80%] search_genes writing output... [ 85%] search_systems writing output... [ 90%] system writing output... [ 95%] system_definition writing output... [100%] system_parser /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Homolog.gene:: WARNING: more than one target found for cross-reference 'gene': macsypy.gene, macsypy.gene.Homolog.gene, macsypy.gene.Analog.gene /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Analog.gene:: WARNING: more than one target found for cross-reference 'gene': macsypy.gene, macsypy.gene.Homolog.gene, macsypy.gene.Analog.gene generating indices... genindex py-modindex highlighting module code... [ 10%] abc highlighting module code... [ 20%] collections highlighting module code... [ 30%] macsypy.database highlighting module code... [ 40%] macsypy.gene highlighting module code... [ 50%] macsypy.macsypy_error highlighting module code... [ 60%] macsypy.report highlighting module code... [ 70%] macsypy.search_genes highlighting module code... [ 80%] macsypy.system highlighting module code... [ 90%] macsypy.system_parser highlighting module code... [100%] namedtuple_RepliconInfo writing additional pages... search copying images... [ 25%] images/FigureS2_figure_TXSScan_last-new.svg copying images... [ 50%] images/figure_main-2.svg copying images... [ 75%] images/fig_capture.svg copying images... [100%] images/Figure1_figure_system_no_mb-new3_2col.svg copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 17 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/macsyfinder-1.0.5/doc' cd doc && make latexpdf make[2]: Entering directory '/build/macsyfinder-1.0.5/doc' sphinx-build -b latex -d _build/doctrees . _build/latex Running Sphinx v1.8.4 making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [] 0 added, 2 changed, 0 removed reading sources... [ 50%] config reading sources... [100%] search_systems WARNING: autodoc: failed to import module 'config' from module 'macsypy'; the following exception was raised: No module named 'ConfigParser' WARNING: autodoc: failed to import module 'search_systems' from module 'macsypy'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 154, in import_module __import__(modname) File "/build/macsyfinder-1.0.5/macsypy/search_systems.py", line 1027 """ ^ SyntaxError: (unicode error) 'unicodeescape' codec can't decode bytes in position 685-686: truncated \uXXXX escape looking for now-outdated files... none found pickling environment... done checking consistency... done processing Macsyfinder.tex...index installation quickstart input gembase_convention outputs macsyview system_definition implementation functioning config database system system_parser gene profile HMMReport search_genes search_systems macsypy_error resolving references... /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Homolog.gene:: WARNING: more than one target found for cross-reference 'gene': macsypy.gene, macsypy.gene.Homolog.gene, macsypy.gene.Analog.gene /build/macsyfinder-1.0.5/macsypy/gene.py:docstring of macsypy.gene.Analog.gene:: WARNING: more than one target found for cross-reference 'gene': macsypy.gene, macsypy.gene.Homolog.gene, macsypy.gene.Analog.gene writing... done copying images... [ 25%] images/figure_main-2.png copying images... [ 50%] images/fig_capture.png copying images... [ 75%] images/Figure1_figure_system_no_mb-new3_2col.png copying images... [100%] images/FigureS2_figure_TXSScan_last-new.png copying TeX support files... done build succeeded, 4 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Running LaTeX files through pdflatex... make -C _build/latex all-pdf make[3]: Entering directory '/build/macsyfinder-1.0.5/doc/_build/latex' latexmk -pdf -dvi- -ps- 'Macsyfinder.tex' Latexmk: This is Latexmk, John Collins, 25 October 2018, version: 4.61. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "Macsyfinder.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on Macsyfinder.pdf (55 pages, 2393479 bytes). Transcript written on Macsyfinder.log. Latexmk: Index file 'Macsyfinder.idx' was written Latexmk: Missing input file: 'Macsyfinder.ind' from line 'No file Macsyfinder.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'Macsyfinder.pdf' Latexmk: List of undefined refs and citations: Reference `HMMReport:module-macsypy.report' on page 51 undefined on input line 3966 Reference `database:module-macsypy.database' on page 51 undefined on input line 3963 Reference `macsypy_error:module-macsypy.macsypy_error' on page 51 undefined on input line 3965 Reference `profile:module-macsypy.gene' on page 51 undefined on input line 3964 Reference `search_genes:module-macsypy.search_genes' on page 51 undefined on input line 3967 Reference `system:module-macsypy.system' on page 51 undefined on input line 3968 Reference `system_parser:module-macsypy.system_parser' on page 51 undefined on input line 3969 Rule 'makeindex Macsyfinder.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'Macsyfinder.idx' Non-existent destination files: 'Macsyfinder.ind' ------------ Run number 1 of rule 'makeindex Macsyfinder.idx' ------------ ------------ Running 'makeindex -s python.ist -o "Macsyfinder.ind" "Macsyfinder.idx"' ------------ === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex Macsyfinder.idx'... This is makeindex, version 2.15 [TeX Live 2019/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file Macsyfinder.idx....done (165 entries accepted, 0 rejected). Sorting entries....done (1329 comparisons). Generating output file Macsyfinder.ind....done (226 lines written, 0 warnings). Output written in Macsyfinder.ind. Transcript written in Macsyfinder.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'Macsyfinder.aux' 'Macsyfinder.ind' 'Macsyfinder.out' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "Macsyfinder.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on Macsyfinder.pdf (59 pages, 2417195 bytes). Transcript written on Macsyfinder.log. Latexmk: Index file 'Macsyfinder.idx' was written Latexmk: Log file says output to 'Macsyfinder.pdf' Latexmk: List of undefined refs and citations: Label `HMMReport:module-macsypy.report' multiply defined Label `gene:module-macsypy.gene' multiply defined Label `profile:module-macsypy.gene' multiply defined Label `system:module-macsypy.system' multiply defined Latexmk: Summary of warnings from last run of (pdf)latex: Latex found 9 multiply defined reference(s) === TeX engine is 'pdfTeX' Latexmk: All targets (Macsyfinder.pdf) are up-to-date make[3]: Leaving directory '/build/macsyfinder-1.0.5/doc/_build/latex' pdflatex finished; the PDF files are in _build/latex. make[2]: Leaving directory '/build/macsyfinder-1.0.5/doc' python setup.py install --prefix=debian/macsyfinder/usr/ --install-conf=debian/macsyfinder/etc/ --no-viewer running install moving build/lib.linux-armv7l-2.7/macsypy/config.py.tmp -> build/lib.linux-armv7l-2.7/macsypy/config.py moving build/lib.linux-armv7l-2.7/macsypy/registries.py.tmp -> build/lib.linux-armv7l-2.7/macsypy/registries.py moving build/lib.linux-armv7l-2.7/macsypy/__init__.py.tmp -> build/lib.linux-armv7l-2.7/macsypy/__init__.py running build running build_py running build_scripts macsyview not found Unit tests are available. It is _highly_ recommended to run tests now. to run test, run 'python setup.py test -vv' running install_lib creating debian/macsyfinder creating debian/macsyfinder/usr creating debian/macsyfinder/usr/lib creating debian/macsyfinder/usr/lib/python2.7 creating debian/macsyfinder/usr/lib/python2.7/site-packages creating debian/macsyfinder/usr/lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/gene.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/database.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/macsypy_error.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/report.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/search_systems.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/config.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/utils.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/registries.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/system_parser.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/search_genes.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/__init__.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy copying build/lib.linux-armv7l-2.7/macsypy/system.py -> debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/gene.py to gene.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/database.py to database.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/macsypy_error.py to macsypy_error.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/report.py to report.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/search_systems.py to search_systems.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/config.py to config.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/utils.py to utils.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/registries.py to registries.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/system_parser.py to system_parser.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/search_genes.py to search_genes.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/__init__.py to __init__.pyc byte-compiling debian/macsyfinder/usr//lib/python2.7/site-packages/macsypy/system.py to system.pyc running install_scripts creating debian/macsyfinder/usr/bin copying build/scripts-2.7/macsyfinder -> debian/macsyfinder/usr//bin changing mode of debian/macsyfinder/usr//bin/macsyfinder to 775 running install_data creating debian/macsyfinder/usr/share creating debian/macsyfinder/usr/share/macsyfinder creating debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIIU.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeID.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeU.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIE.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIU.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIIIA.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIIB.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIIIU.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIB.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIA.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIIA.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIC.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIIIB.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF copying data/DEF/CAS-TypeIF.xml -> debian/macsyfinder/usr/share/macsyfinder/DEF creating debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cpf1_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csf2_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas6_TypeI-III.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csm4_TypeIIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csm6_TypeIIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csx10_TypeIIIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5b_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csc2_TypeID.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csy3_TypeIF.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas3_TypeIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas3_TypeI.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a2a2_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7b2_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas10_TypeIIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7_TypeI.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csx16_TypeIIIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7b3_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5_TypeI.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csf4_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas10d_TypeID.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas3-cas2_TypeIF.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a1b_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas2_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csb3_TypeIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8b_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csf3_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8c2_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/casRa_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeI-II-III.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a1a2_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeIF.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csy2_TypeIF.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csx3_TypeIIIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cmr5_TypeIIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a1b3_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas10_TypeIIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas3a_TypeI.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas4_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8c_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas4_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csn2_TypeIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csx17_TypeIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cmr4_TypeIIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5c2_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csm5_TypeIIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a1a3_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5a2_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas2_TypeI-II-III.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csf1_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cse1_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas6_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csaX_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csb2_TypeIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeID.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7b_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csm3_TypeIIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7c2_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csy1_TypeIF.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a2a_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cse2_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas4_TypeI-II.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csc1_TypeID.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cmr3_TypeIIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas6_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas8a1b2_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cmr6_TypeIIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas6_TypeIF.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cmr1_TypeIIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csx1u_TypeIIIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csa5_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csx1u2_TypeIIIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas3_TypeID.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csm2_TypeIIIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeIE.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5b2_TypeIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5c_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas1_TypeII.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas7c_TypeIC.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas9_TypeIIB.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas9_TypeII.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/cas5a_TypeIA.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles copying data/profiles/csb1_TypeIU.hmm -> debian/macsyfinder/usr/share/macsyfinder/profiles creating debian/macsyfinder/usr/share/macsyfinder/sequence_data copying data/sequence_data/datatest_gembase.topology -> debian/macsyfinder/usr/share/macsyfinder/sequence_data copying data/sequence_data/results.macsyfinder.json -> debian/macsyfinder/usr/share/macsyfinder/sequence_data copying data/sequence_data/datatest_gembase.fasta -> debian/macsyfinder/usr/share/macsyfinder/sequence_data creating debian/macsyfinder/usr/share/macsyfinder/macsyview creating debian/macsyfinder/usr/share/macsyfinder/macsyview/app WARNING the document macsyview/app/ cannot be found, installation skipped running install_egg_info Writing debian/macsyfinder/usr//lib/python2.7/site-packages/macsyfinder-1.0.5-py2.7.egg-info running install_doc creating debian/macsyfinder/usr/share/doc creating debian/macsyfinder/usr/share/doc/macsyfinder creating debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/installation.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/gembase_convention.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/quickstart.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/HMMReport.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html creating debian/macsyfinder/usr/share/doc/macsyfinder/html/_images copying doc/_build/html/_images/fig_capture.svg -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_images copying doc/_build/html/_images/graphviz-1357877dc7068bd842fa4a7ea801bfbc06bc814c.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_images copying doc/_build/html/_images/FigureS2_figure_TXSScan_last-new.svg -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_images copying doc/_build/html/_images/Figure1_figure_system_no_mb-new3_2col.svg -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_images copying doc/_build/html/_images/figure_main-2.svg -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_images copying doc/_build/html/_images/graphviz-1357877dc7068bd842fa4a7ea801bfbc06bc814c.png.map -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_images creating debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules copying doc/_build/html/_modules/collections.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules copying doc/_build/html/_modules/index.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules copying doc/_build/html/_modules/abc.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules creating debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/report.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/database.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/macsypy_error.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/system.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/system_parser.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/gene.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/_modules/macsypy/search_genes.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_modules/macsypy copying doc/_build/html/genindex.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/database.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html creating debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/HMMReport.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/search_genes.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/search_systems.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/gene.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/system_parser.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/gembase_convention.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/database.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/quickstart.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/system.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/installation.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/functioning.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/macsypy_error.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/system_definition.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/macsyview.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/config.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/implementation.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/index.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/profile.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/outputs.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/_sources/input.rst.txt -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_sources copying doc/_build/html/macsypy_error.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/.buildinfo -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/input.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/config.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/search_systems.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/objects.inv -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/functioning.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/system.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/searchindex.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/index.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/macsyview.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/system_definition.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/profile.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html creating debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/up-pressed.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/underscore.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/basic.css -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/jquery.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/sidebar.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/plus.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/doctools.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/language_data.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/down.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/pygments.css -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/ajax-loader.gif -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/file.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/searchtools.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/classic.css -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/graphviz.css -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/minus.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/down-pressed.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/default.css -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/up.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/websupport.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/comment-close.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/comment.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/comment-bright.png -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/_static/documentation_options.js -> debian/macsyfinder/usr/share/doc/macsyfinder/html/_static copying doc/_build/html/search.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/system_parser.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/gene.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/py-modindex.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/search_genes.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/implementation.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html copying doc/_build/html/outputs.html -> debian/macsyfinder/usr/share/doc/macsyfinder/html creating debian/macsyfinder/usr/share/doc/macsyfinder/pdf copying doc/_build/latex/Macsyfinder.pdf -> debian/macsyfinder/usr/share/doc/macsyfinder/pdf running install_conf creating debian/macsyfinder/etc creating debian/macsyfinder/etc/macsyfinder copying etc/macsyfinder.conf -> debian/macsyfinder/etc/macsyfinder/macsyfinder.conf.new moving debian/macsyfinder/etc/macsyfinder/macsyfinder.conf.new.tmp -> debian/macsyfinder/etc/macsyfinder/macsyfinder.conf.new writing list of installed files to 'uninstall_files' # The better solution would be to use # dh_auto_install -- --prefix=/usr --install-conf=/etc --no-viewer # and fiy setup.py to use --root as install location (which is ignored unfortunately) # Since I have no idea how to fix setup.py here the broken config files are hacked afterwards for conffile in \ etc/macsyfinder/macsyfinder.conf.new \ usr/lib/python2.7/site-packages/macsypy/config.py \ usr/lib/python2.7/site-packages/macsypy/registries.py \ ; do \ sed -i 's:debian/macsyfinder::g' debian/macsyfinder/${conffile} ; \ done mv debian/macsyfinder/etc/macsyfinder/macsyfinder.conf.new debian/macsyfinder/etc/macsyfinder/macsyfinder.conf rm debian/macsyfinder/usr/share/doc/macsyfinder/html/_static/jquery.js rm debian/macsyfinder/usr/share/doc/macsyfinder/html/_static/underscore.js rm -Rf debian/macsyfinder/usr/share/macsyfinder/macsyview make[1]: Leaving directory '/build/macsyfinder-1.0.5' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python2 I: dh_python2 fs:420: renaming macsyfinder-1.0.5-py2.7.egg-info to macsyfinder-1.0.5.egg-info I: dh_python2 tools:114: replacing shebang in debian/macsyfinder/usr/bin/macsyfinder dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package macsyfinder: substitution variable ${python:Versions} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'macsyfinder' in '../macsyfinder_1.0.5-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../macsyfinder_1.0.5-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/9933/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/9933/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9933 and its subdirectories I: Current time: Sat Aug 8 21:05:22 +14 2020 I: pbuilder-time-stamp: 1596870322