I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 17 02:50:18 -12 2020 I: pbuilder-time-stamp: 1592405418 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libmstoolkit_82-6.dsc] I: copying [./libmstoolkit_82.orig.tar.gz] I: copying [./libmstoolkit_82-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Mar 5 03:50:29 2018 -12 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libmstoolkit_82-6.dsc dpkg-source: info: extracting libmstoolkit in libmstoolkit-82 dpkg-source: info: unpacking libmstoolkit_82.orig.tar.gz dpkg-source: info: unpacking libmstoolkit_82-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying missing-license-stanzas-added.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19508/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='acce4256ed2a4684813344ca2b61020b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19508' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MBMAXPDzsq/pbuilderrc_xMHu --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MBMAXPDzsq/b1 --logfile b1/build.log libmstoolkit_82-6.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux ff2a 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 15 20:25 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/19508/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), dpkg-dev (>= 1.16.1~), zlib1g-dev (>= 1:1.2.8), libsqlite3-dev (>= 3.8.6), libexpat1-dev (>= 2.1.0), docbook-to-man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev (>= 1:1.2.8); however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev (>= 3.8.6); however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libexpat1-dev (>= 2.1.0); however: Package libexpat1-dev is not installed. pbuilder-satisfydepends-dummy depends on docbook-to-man; however: Package docbook-to-man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook{a} docbook-to-man{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libosp5{a} libpipeline1{a} libsigsegv2{a} libsqlite3-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} opensp{a} po-debconf{a} sensible-utils{a} sgml-base{a} sgml-data{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 21.1 MB of archives. After unpacking 73.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sgml-base all 1.29 [14.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 11 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 12 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 14 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 25 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 31 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 32 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 36 http://deb.debian.org/debian buster/main armhf sgml-data all 2.0.11 [179 kB] Get: 37 http://deb.debian.org/debian buster/main armhf docbook all 4.5-6 [129 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libosp5 armhf 1.5.2-13+b1 [877 kB] Get: 39 http://deb.debian.org/debian buster/main armhf opensp armhf 1.5.2-13+b1 [435 kB] Get: 40 http://deb.debian.org/debian buster/main armhf docbook-to-man armhf 1:2.0.0-42 [71.5 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libsqlite3-dev armhf 3.27.2-3 [722 kB] Get: 44 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Fetched 21.1 MB in 6s (3441 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../06-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../12-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../23-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../25-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../26-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../27-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../28-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../29-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... 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Processing triggers for sgml-base (1.29) ... Setting up docbook (4.5-6) ... Processing triggers for sgml-base (1.29) ... Setting up docbook-to-man (1:2.0.0-42) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libmstoolkit-82/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libmstoolkit dpkg-buildpackage: info: source version 82-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libmstoolkit-82' make clean make[2]: Entering directory '/build/libmstoolkit-82' rm -f libmstoolkitlite.a libmstoolkitlite.so libmstoolkitlite.so.82* libmstoolkit.a libmstoolkit.so libmstoolkit.so.82* rm -f *.o msSingleScan.* make[2]: Leaving directory '/build/libmstoolkit-82' rm -f libmstoolkit.3 make[1]: Leaving directory '/build/libmstoolkit-82' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libmstoolkit-dev.substvars debian/libmstoolkit82.substvars debian/libmstoolkit-tools.substvars debian/files rm -fr -- debian/libmstoolkit-dev/ debian/tmp/ debian/libmstoolkit82/ debian/libmstoolkit-tools/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/libmstoolkit-82' docbook-to-man debian/libmstoolkit.sgml > debian/libmstoolkit.3 make all make[2]: Entering directory '/build/libmstoolkit-82' make arlib make[3]: Entering directory '/build/libmstoolkit-82' rm -f *.o msSingleScan.* g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/MSNumpress.cpp -c -o mzp.MSNumpress.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o mzp.mzp_base64.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o mzp.BasicSpectrum.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const specDP&}; _Tp = specDP; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::addDP(specDP)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const sPrecursorIon&}; _Tp = sPrecursorIon; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicSpectrum& BasicSpectrum::operator=(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicSpectrum::BasicSpectrum(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::setPrecursorIon(sPrecursorIon&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o mzp.saxhandler.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o mzp.saxmzmlhandler.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzmlHandler::decode(std::vector&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o mzp.saxmzxmlhandler.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decode64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decompress64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decode32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decompress32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzxmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o mzp.mz5handler.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o mzp.mzpMz5Config.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o mzp.mzpMz5Structs.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o mzp.BasicChromatogram.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const TimeIntensityPair&}; _Tp = TimeIntensityPair; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicChromatogram::addTIP(TimeIntensityPair)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicChromatogram::BasicChromatogram(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicChromatogram& BasicChromatogram::operator=(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o mzp.mzp_base64_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o mzp.BasicSpectrum_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const specDP&}; _Tp = specDP; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::addDP(specDP)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const sPrecursorIon&}; _Tp = sPrecursorIon; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicSpectrum& BasicSpectrum::operator=(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicSpectrum::BasicSpectrum(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::setPrecursorIon(sPrecursorIon&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o mzp.saxhandler_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o mzp.saxmzmlhandler_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzmlHandler::decode(std::vector&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o mzp.saxmzxmlhandler_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decode64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decompress64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decode32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decompress32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzxmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o mzp.mz5handler_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o mzp.mzpMz5Config_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o mzp.mzpMz5Structs_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o mzp.BasicChromatogram_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const TimeIntensityPair&}; _Tp = TimeIntensityPair; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicChromatogram::addTIP(TimeIntensityPair)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicChromatogram::BasicChromatogram(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicChromatogram& BasicChromatogram::operator=(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface_lite.o g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/Spectrum.cpp -c In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addMZ(double, double)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::setMZ(double, double)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::Peak_T&}; _Tp = MSToolkit::Peak_T; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::setPeaks(std::vector)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::add(MSToolkit::Peak_T&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::add(double, float)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::EZState&}; _Tp = MSToolkit::EZState; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addEZState(MSToolkit::EZState&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addEZState(int, double, float, float)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::ZState&}; _Tp = MSToolkit::ZState; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'MSToolkit::Spectrum& MSToolkit::Spectrum::operator=(const MSToolkit::Spectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addZState(MSToolkit::ZState&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'MSToolkit::Spectrum::Spectrum(const MSToolkit::Spectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addZState(int, double)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSObject.cpp -c In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./src/MSToolkit/MSObject.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::Spectrum&}; _Tp = MSToolkit::Spectrum; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./src/MSToolkit/MSObject.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::MSObject::add(MSToolkit::Spectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'MSToolkit::MSObject::MSObject(const MSToolkit::MSObject&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'MSToolkit::MSObject& MSToolkit::MSObject::operator=(const MSToolkit::MSObject&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/mzMLWriter.cpp -c ./src/MSToolkit/mzMLWriter.cpp: In member function 'bool MSToolkit::MzMLWriter::writeSpectra(MSToolkit::MSObject&)': ./src/MSToolkit/mzMLWriter.cpp:260:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::sMzMLIndex&}; _Tp = MSToolkit::sMzMLIndex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportBinaryDataArray(BasicChromatogram&, bool, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportChromatogram(BasicChromatogram&, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportBinaryDataArray(MSToolkit::Spectrum&, bool, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportSpectrum(MSToolkit::Spectrum&, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/pepXMLWriter.cpp -c g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSReader.cpp -c g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -D_NOSQLITE ./src/MSToolkit/MSReader.cpp -c -o MSReaderLite.o ar rcs libmstoolkitlite.a mzp.MSNumpress.o mzp.mzp_base64_lite.o mzp.BasicSpectrum_lite.o mzp.mzParser_lite.o mzp.RAMPface_lite.o mzp.saxhandler_lite.o mzp.saxmzmlhandler_lite.o mzp.saxmzxmlhandler_lite.o mzp.Czran_lite.o mzp.mz5handler_lite.o mzp.mzpMz5Config_lite.o mzp.mzpMz5Structs_lite.o mzp.BasicChromatogram_lite.o mzp.PWIZface_lite.o Spectrum.o MSObject.o mzMLWriter.o pepXMLWriter.o MSReaderLite.o ar rcs libmstoolkit.a mzp.MSNumpress.o mzp.mzp_base64.o mzp.BasicSpectrum.o mzp.mzParser.o mzp.RAMPface.o mzp.saxhandler.o mzp.saxmzmlhandler.o mzp.saxmzxmlhandler.o mzp.Czran.o mzp.mz5handler.o mzp.mzpMz5Config.o mzp.mzpMz5Structs.o mzp.BasicChromatogram.o mzp.PWIZface.o Spectrum.o MSObject.o mzMLWriter.o pepXMLWriter.o MSReader.o make[3]: Leaving directory '/build/libmstoolkit-82' make solib make[3]: Entering directory '/build/libmstoolkit-82' rm -f *.o msSingleScan.* g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/MSNumpress.cpp -c -o mzp.MSNumpress.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o mzp.mzp_base64.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o mzp.BasicSpectrum.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const specDP&}; _Tp = specDP; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::addDP(specDP)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const sPrecursorIon&}; _Tp = sPrecursorIon; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicSpectrum& BasicSpectrum::operator=(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicSpectrum::BasicSpectrum(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::setPrecursorIon(sPrecursorIon&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o mzp.saxhandler.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o mzp.saxmzmlhandler.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzmlHandler::decode(std::vector&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o mzp.saxmzxmlhandler.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decode64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decompress64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decode32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decompress32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzxmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o mzp.mz5handler.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o mzp.mzpMz5Config.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o mzp.mzpMz5Structs.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o mzp.BasicChromatogram.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const TimeIntensityPair&}; _Tp = TimeIntensityPair; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicChromatogram::addTIP(TimeIntensityPair)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicChromatogram::BasicChromatogram(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicChromatogram& BasicChromatogram::operator=(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o mzp.mzp_base64_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o mzp.BasicSpectrum_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const specDP&}; _Tp = specDP; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::addDP(specDP)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const sPrecursorIon&}; _Tp = sPrecursorIon; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicSpectrum.cpp:8: /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicSpectrum& BasicSpectrum::operator=(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicSpectrum::BasicSpectrum(const BasicSpectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicSpectrum::setPrecursorIon(sPrecursorIon&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o mzp.saxhandler_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o mzp.saxmzmlhandler_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzmlHandler::decode(std::vector&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzmlhandler.cpp:36: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o mzp.saxmzxmlhandler_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const cindex&}; _Tp = cindex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decode64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void mzpSAXMzxmlHandler::decompress64()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decode32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void mzpSAXMzxmlHandler::decompress32()': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/saxmzxmlhandler.cpp:21: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void mzpSAXMzxmlHandler::endElement(const XML_Char*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o mzp.mz5handler_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o mzp.mzpMz5Config_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o mzp.mzpMz5Structs_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o mzp.BasicChromatogram_lite.o In file included from /usr/include/c++/8/vector:69, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const TimeIntensityPair&}; _Tp = TimeIntensityPair; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/mzParser.h:26, from src/mzParser/BasicChromatogram.cpp:11: /usr/include/c++/8/bits/stl_vector.h: In member function 'void BasicChromatogram::addTIP(TimeIntensityPair)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'BasicChromatogram::BasicChromatogram(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'BasicChromatogram& BasicChromatogram::operator=(const BasicChromatogram&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface_lite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/Spectrum.cpp -c In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addMZ(double, double)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::setMZ(double, double)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::Peak_T&}; _Tp = MSToolkit::Peak_T; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::setPeaks(std::vector)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::add(MSToolkit::Peak_T&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::add(double, float)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::EZState&}; _Tp = MSToolkit::EZState; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addEZState(MSToolkit::EZState&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addEZState(int, double, float, float)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::ZState&}; _Tp = MSToolkit::ZState; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./src/MSToolkit/Spectrum.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'MSToolkit::Spectrum& MSToolkit::Spectrum::operator=(const MSToolkit::Spectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addZState(MSToolkit::ZState&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'MSToolkit::Spectrum::Spectrum(const MSToolkit::Spectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::Spectrum::addZState(int, double)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSObject.cpp -c In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./src/MSToolkit/MSObject.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::Spectrum&}; _Tp = MSToolkit::Spectrum; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./src/MSToolkit/MSObject.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void MSToolkit::MSObject::add(MSToolkit::Spectrum&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'MSToolkit::MSObject::MSObject(const MSToolkit::MSObject&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'MSToolkit::MSObject& MSToolkit::MSObject::operator=(const MSToolkit::MSObject&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/mzMLWriter.cpp -c ./src/MSToolkit/mzMLWriter.cpp: In member function 'bool MSToolkit::MzMLWriter::writeSpectra(MSToolkit::MSObject&)': ./src/MSToolkit/mzMLWriter.cpp:260:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const MSToolkit::sMzMLIndex&}; _Tp = MSToolkit::sMzMLIndex; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportBinaryDataArray(BasicChromatogram&, bool, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportChromatogram(BasicChromatogram&, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportBinaryDataArray(MSToolkit::Spectrum&, bool, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ./include/Spectrum.h:20, from ./include/MSObject.h:20, from ./include/mzMLWriter.h:21, from ./src/MSToolkit/mzMLWriter.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'bool MSToolkit::MzMLWriter::exportSpectrum(MSToolkit::Spectrum&, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/pepXMLWriter.cpp -c g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSReader.cpp -c g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -D_NOSQLITE ./src/MSToolkit/MSReader.cpp -c -o MSReaderLite.o g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -o libmstoolkitlite.so.82.0.0 -Wl,-z,relro -Wl,-soname,libmstoolkitlite.so.82 mzp.MSNumpress.o mzp.mzp_base64_lite.o mzp.BasicSpectrum_lite.o mzp.mzParser_lite.o mzp.RAMPface_lite.o mzp.saxhandler_lite.o mzp.saxmzmlhandler_lite.o mzp.saxmzxmlhandler_lite.o mzp.Czran_lite.o mzp.mz5handler_lite.o mzp.mzpMz5Config_lite.o mzp.mzpMz5Structs_lite.o mzp.BasicChromatogram_lite.o mzp.PWIZface_lite.o Spectrum.o MSObject.o mzMLWriter.o pepXMLWriter.o MSReaderLite.o -lm -lpthread -ldl -lz -lsqlite3 -lexpat ln -sf libmstoolkitlite.so.82.0.0 libmstoolkitlite.so.82 ln -sf libmstoolkitlite.so.82 libmstoolkitlite.so g++ -O3 -shared -fPIC -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -o libmstoolkit.so.82.0.0 -Wl,-z,relro -Wl,-soname,libmstoolkit.so.82 mzp.MSNumpress.o mzp.mzp_base64.o mzp.BasicSpectrum.o mzp.mzParser.o mzp.RAMPface.o mzp.saxhandler.o mzp.saxmzmlhandler.o mzp.saxmzxmlhandler.o mzp.Czran.o mzp.mz5handler.o mzp.mzpMz5Config.o mzp.mzpMz5Structs.o mzp.BasicChromatogram.o mzp.PWIZface.o Spectrum.o MSObject.o mzMLWriter.o pepXMLWriter.o MSReader.o -lm -lpthread -ldl -lz -lsqlite3 -lexpat ln -sf libmstoolkit.so.82.0.0 libmstoolkit.so.82 ln -sf libmstoolkit.so.82 libmstoolkit.so # Be careful not to include in the linker command line below the compilation -shared -fPIC flags! g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -I./include -L. MSSingleScan/MSSingleScan.cpp -o msSingleScan -lm -lpthread -ldl -lz -lsqlite3 -lexpat -lmstoolkitlite make[3]: Leaving directory '/build/libmstoolkit-82' make[2]: Leaving directory '/build/libmstoolkit-82' make[1]: Leaving directory '/build/libmstoolkit-82' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/libmstoolkit-dev.substvars debian/libmstoolkit82.substvars debian/libmstoolkit-tools.substvars rm -fr -- debian/.debhelper/generated/libmstoolkit-dev/ debian/libmstoolkit-dev/ debian/tmp/ debian/.debhelper/generated/libmstoolkit82/ debian/libmstoolkit82/ debian/.debhelper/generated/libmstoolkit-tools/ debian/libmstoolkit-tools/ dh_installdirs install -d debian/libmstoolkit-dev/usr/lib debian/libmstoolkit-dev/usr/include debian/libmstoolkit-dev/usr/include/libmstoolkit install -d debian/libmstoolkit82/usr/lib install -d debian/libmstoolkit-tools/usr/bin dh_auto_install install -d /build/libmstoolkit-82/debian/tmp dh_install cp --reflink=auto -a ./include/MSNumpress.hpp ./include/MSObject.h ./include/MSReader.h ./include/MSToolkitTypes.h ./include/RAWReader.h ./include/Spectrum.h ./include/mzMLWriter.h ./include/mzParser.h ./include/pepXMLWriter.h debian/libmstoolkit-dev/usr/include/libmstoolkit/ cp --reflink=auto -a ./libmstoolkit.a ./libmstoolkitlite.a debian/libmstoolkit-dev/usr/lib/ install -d debian/.debhelper/generated/libmstoolkit-dev cp --reflink=auto -a ./libmstoolkit.so.82.0.0 ./libmstoolkitlite.so.82.0.0 debian/libmstoolkit82/usr/lib/ install -d debian/.debhelper/generated/libmstoolkit82 cp --reflink=auto -a ./msSingleScan debian/libmstoolkit-tools/usr/bin/ install -d debian/.debhelper/generated/libmstoolkit-tools dh_installdocs install -d debian/libmstoolkit-dev/usr/share/doc/libmstoolkit-dev install -p -m0644 debian/copyright debian/libmstoolkit-dev/usr/share/doc/libmstoolkit-dev/copyright install -d debian/libmstoolkit82/usr/share/doc/libmstoolkit82 install -p -m0644 debian/copyright debian/libmstoolkit82/usr/share/doc/libmstoolkit82/copyright install -d debian/libmstoolkit-tools/usr/share/doc/libmstoolkit-tools install -p -m0644 debian/copyright debian/libmstoolkit-tools/usr/share/doc/libmstoolkit-tools/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/libmstoolkit-tools/usr/share/doc/libmstoolkit-tools/changelog.Debian install -p -m0644 debian/changelog debian/libmstoolkit-dev/usr/share/doc/libmstoolkit-dev/changelog.Debian install -p -m0644 debian/changelog debian/libmstoolkit82/usr/share/doc/libmstoolkit82/changelog.Debian dh_installman install -d debian/libmstoolkit82/usr/share/man/man3/ install -p -m0644 ./debian/libmstoolkit.3 debian/libmstoolkit82/usr/share/man/man3/libmstoolkit.3 man -l --recode UTF-8 ./debian/libmstoolkit82/usr/share/man/man3/libmstoolkit.3 > debian/libmstoolkit82/usr/share/man/man3/libmstoolkit.3.dh-new mv debian/libmstoolkit82/usr/share/man/man3/libmstoolkit.3.dh-new debian/libmstoolkit82/usr/share/man/man3/libmstoolkit.3 chmod 0644 -- debian/libmstoolkit82/usr/share/man/man3/libmstoolkit.3 dh_lintian install -d debian/libmstoolkit82/usr/share/lintian/overrides install -p -m0644 debian/libmstoolkit82.lintian-overrides debian/libmstoolkit82/usr/share/lintian/overrides/libmstoolkit82 dh_perl dh_link install -d debian/libmstoolkit-dev/usr/share/man/man3 rm -f debian/libmstoolkit-dev/usr/share/man/man3/libmstoolkit-dev.3.gz ln -s libmstoolkit.3.gz debian/libmstoolkit-dev/usr/share/man/man3/libmstoolkit-dev.3.gz rm -f debian/libmstoolkit-dev/usr/lib/libmstoolkitlite.so ln -s libmstoolkitlite.so.82.0.0 debian/libmstoolkit-dev/usr/lib/libmstoolkitlite.so rm -f debian/libmstoolkit-dev/usr/lib/libmstoolkit.so ln -s libmstoolkit.so.82.0.0 debian/libmstoolkit-dev/usr/lib/libmstoolkit.so rm -f debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82 ln -s libmstoolkitlite.so.82.0.0 debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82 rm -f debian/libmstoolkit82/usr/lib/libmstoolkit.so.82 ln -s libmstoolkit.so.82.0.0 debian/libmstoolkit82/usr/lib/libmstoolkit.so.82 install -d debian/libmstoolkit-tools/usr/share/man/man1 rm -f debian/libmstoolkit-tools/usr/share/man/man1/msSingleScan.1.gz ln -s ../man3/libmstoolkit.3.gz debian/libmstoolkit-tools/usr/share/man/man1/msSingleScan.1.gz dh_strip_nondeterminism dh_compress cd debian/libmstoolkit-dev cd debian/libmstoolkit82 cd debian/libmstoolkit-tools chmod a-x usr/share/doc/libmstoolkit-dev/changelog.Debian gzip -9nf usr/share/doc/libmstoolkit-dev/changelog.Debian chmod a-x usr/share/doc/libmstoolkit-tools/changelog.Debian chmod a-x usr/share/doc/libmstoolkit82/changelog.Debian usr/share/man/man3/libmstoolkit.3 cd '/build/libmstoolkit-82' gzip -9nf usr/share/doc/libmstoolkit-tools/changelog.Debian gzip -9nf usr/share/doc/libmstoolkit82/changelog.Debian usr/share/man/man3/libmstoolkit.3 cd '/build/libmstoolkit-82' cd '/build/libmstoolkit-82' dh_fixperms find debian/libmstoolkit-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmstoolkit82 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmstoolkit-tools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmstoolkit-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmstoolkit-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmstoolkit82 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmstoolkit-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/libmstoolkit-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit82/usr/share/doc -type f -a -true -a ! -regex 'debian/libmstoolkit82/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmstoolkit-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libmstoolkit-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit82/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmstoolkit-tools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmstoolkit82/usr/share/man debian/libmstoolkit82/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit-dev/usr/share/man debian/libmstoolkit-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit82 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libmstoolkit-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmstoolkit82/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libmstoolkit-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_strip strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmstoolkit-dev/usr/lib/libmstoolkit.a install -d debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/libmstoolkit-tools/usr/bin/msSingleScan debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/lib/debug/.build-id/a9/c991af08f9ce692e63b5cf9a305d36084a9969.debug chmod 0644 -- debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/lib/debug/.build-id/a9/c991af08f9ce692e63b5cf9a305d36084a9969.debug chown 0:0 -- debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/lib/debug/.build-id/a9/c991af08f9ce692e63b5cf9a305d36084a9969.debug strip --remove-section=.comment --remove-section=.note debian/libmstoolkit-tools/usr/bin/msSingleScan install -d debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/c1 objcopy --only-keep-debug --compress-debug-sections debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/c1/1d5196b118fa5538af907b0eb9eea81bb23574.debug objcopy --add-gnu-debuglink debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/lib/debug/.build-id/a9/c991af08f9ce692e63b5cf9a305d36084a9969.debug debian/libmstoolkit-tools/usr/bin/msSingleScan install -d debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/share/doc ln -s libmstoolkit-tools debian/.debhelper/libmstoolkit-tools/dbgsym-root/usr/share/doc/libmstoolkit-tools-dbgsym strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmstoolkit-dev/usr/lib/libmstoolkitlite.a chmod 0644 -- debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/c1/1d5196b118fa5538af907b0eb9eea81bb23574.debug chown 0:0 -- debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/c1/1d5196b118fa5538af907b0eb9eea81bb23574.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/c1/1d5196b118fa5538af907b0eb9eea81bb23574.debug debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 install -d debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/98/031cf6e94c31645ee5afea620154d5851795b1.debug chmod 0644 -- debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/98/031cf6e94c31645ee5afea620154d5851795b1.debug chown 0:0 -- debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/98/031cf6e94c31645ee5afea620154d5851795b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libmstoolkit82/dbgsym-root/usr/lib/debug/.build-id/98/031cf6e94c31645ee5afea620154d5851795b1.debug debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 install -d debian/.debhelper/libmstoolkit82/dbgsym-root/usr/share/doc ln -s libmstoolkit82 debian/.debhelper/libmstoolkit82/dbgsym-root/usr/share/doc/libmstoolkit82-dbgsym debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/libmstoolkit-82' mkdir -p /build/libmstoolkit-82/debian/libmstoolkit82/DEBIAN dpkg-gensymbols -plibmstoolkit82 \ -v82 \ -c2 -d \ -e/build/libmstoolkit-82/libmstoolkitlite.so.82.0.0 \ -e/build/libmstoolkit-82/libmstoolkit.so.82.0.0 \ -O/build/libmstoolkit-82/debian/libmstoolkit82/DEBIAN/symbols dpkg-gensymbols: debug: Scanning /build/libmstoolkit-82/libmstoolkitlite.so.82.0.0 for symbol information dpkg-gensymbols: debug: Merging symbols from /build/libmstoolkit-82/libmstoolkitlite.so.82.0.0 as libmstoolkitlite.so.82 dpkg-gensymbols: debug: Scanning /build/libmstoolkit-82/libmstoolkit.so.82.0.0 for symbol information dpkg-gensymbols: warning: new libraries appeared in the symbols file: libmstoolkit.so.82 libmstoolkitlite.so.82 dpkg-gensymbols: warning: no debian/symbols file used as basis for generating /build/libmstoolkit-82/debian/libmstoolkit82/DEBIAN/symbols dpkg-gensymbols: debug: Merging symbols from /build/libmstoolkit-82/libmstoolkit.so.82.0.0 as libmstoolkit.so.82 dpkg-gensymbols: debug: Storing symbols in /build/libmstoolkit-82/debian/libmstoolkit82/DEBIAN/symbols. --- new_symbol_file (libmstoolkit82_82_armhf) +++ dpkg-gensymbolsZWYNjH 2020-06-17 02:54:26.600395008 -1200 @@ -0,0 +1,1029 @@ +libmstoolkit.so.82 libmstoolkit82 #MINVER# + _Z10b64_encodePcPKci@Base 82 + _Z10readHeaderP8RAMPFILExP16ScanHeaderStruct@Base 82 + _Z10readHeaderP8RAMPFILExP16ScanHeaderStructm@Base 82 + _Z11readMsLevelP8RAMPFILEx@Base 82 + _Z11readStartMzP8RAMPFILEx@Base 82 + _Z12getPrecursorPK16ScanHeaderStructiRdS2_S2_RiS3_RPi@Base 82 + _Z12getScanCachei@Base 82 + _Z12rampOpenFilePKc@Base 82 + _Z12rampSelfTestPc@Base 82 + _Z13checkFileTypePKc@Base 82 + _Z13freeScanCacheP15ScanCacheStruct@Base 82 + _Z13getCacheIndexP15ScanCacheStructi@Base 82 + _Z13rampCloseFileP8RAMPFILE@Base 82 + _Z13readRunHeaderP8RAMPFILEPxP15RunHeaderStructi@Base 82 + _Z13setRampOptionl@Base 82 + _Z14b64_decode_mioPcS_j@Base 82 + _Z14clearScanCacheP15ScanCacheStruct@Base 82 + _Z14getIndexOffsetP8RAMPFILE@Base 82 + _Z14isScanAveragedP16ScanHeaderStruct@Base 82 + _Z14readPeaksCountP8RAMPFILEx@Base 82 + _Z14readPeaksCountP8RAMPFILExm@Base 82 + _Z14shiftScanCacheP15ScanCacheStructi@Base 82 + _Z15readPeaksCachedP15ScanCacheStructiP8RAMPFILEx@Base 82 + _Z16getScanSpanRangePK16ScanHeaderStructPiS2_@Base 82 + _Z16rampTrimBaseNamePc@Base 82 + _Z16readHeaderCachedP15ScanCacheStructiP8RAMPFILEx@Base 82 + _Z17rampValidFileTypePKc@Base 82 + _Z17readMsLevelCachedP15ScanCacheStructiP8RAMPFILEx@Base 82 + _Z18isScanMergedResultP16ScanHeaderStruct@Base 82 + _Z19getInstrumentStructP8RAMPFILE@Base 82 + _Z22rampConstructInputPathPciPKcS1_@Base 82 + _Z26rampConstructInputFileNamePciPKc@Base 82 + _Z26rampConstructInputFileNameRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 82 + _Z26rampListSupportedFileTypesv@Base 82 + _Z33rampValidateOrDeriveInputFilenamePciS_@Base 82 + _Z9readEndMzP8RAMPFILEx@Base 82 + _Z9readIndexP8RAMPFILExPi@Base 82 + _Z9readMSRunP8RAMPFILEP15RunHeaderStruct@Base 82 + _Z9readPeaksP8RAMPFILEx@Base 82 + _Z9readPeaksP8RAMPFILExm@Base 82 + 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_ZNSt6vectorIN9MSToolkit6Peak_TESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 82 + _ZNSt6vectorIN9MSToolkit6ZStateESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 82 + _ZNSt6vectorIN9MSToolkit7EZStateESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 82 + _ZNSt6vectorIN9MSToolkit8SpectrumESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 82 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 82 + _ZNSt6vectorIPKcSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 82 + _ZNSt6vectorIPKcSaIS1_EED1Ev@Base 82 + _ZNSt6vectorIPKcSaIS1_EED2Ev@Base 82 + _ZNSt6vectorIdSaIdEE17_M_default_appendEj@Base 82 + _ZNSt6vectorIdSaIdEE17_M_realloc_insertIJRKdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 82 + _ZNSt6vectorIdSaIdEE17_M_realloc_insertIJdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 82 + _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJRKfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base 82 + _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base 82 + _ZNSt6vectorIhSaIhEE17_M_default_appendEj@Base 82 + _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 82 + _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 82 + _ZTI13mzpSAXHandler@Base 82 + _ZTI17mzpSAXMzmlHandler@Base 82 + _ZTI18mzpSAXMzxmlHandler@Base 82 + _ZTS13mzpSAXHandler@Base 82 + _ZTS17mzpSAXMzmlHandler@Base 82 + _ZTS18mzpSAXMzxmlHandler@Base 82 + _ZTV13mzpSAXHandler@Base 82 + _ZTV17mzpSAXMzmlHandler@Base 82 + _ZTV18mzpSAXMzxmlHandler@Base 82 dh_makeshlibs -a rm -f debian/libmstoolkit-dev/DEBIAN/shlibs rm -f debian/libmstoolkit82/DEBIAN/shlibs echo "libmstoolkit 82 libmstoolkit82" >> debian/libmstoolkit82/DEBIAN/shlibs echo "libmstoolkitlite 82 libmstoolkit82" >> debian/libmstoolkit82/DEBIAN/shlibs chmod 0644 -- debian/libmstoolkit82/DEBIAN/shlibs chown 0:0 -- debian/libmstoolkit82/DEBIAN/shlibs mv debian/.debhelper/generated/libmstoolkit82/triggers.new debian/.debhelper/generated/libmstoolkit82/triggers rm -f debian/libmstoolkit-tools/DEBIAN/shlibs make[1]: Leaving directory '/build/libmstoolkit-82' dh_shlibdeps dpkg-shlibdeps -Tdebian/libmstoolkit82.substvars debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 install -d debian/libmstoolkit-tools/DEBIAN dpkg-shlibdeps -Tdebian/libmstoolkit-tools.substvars debian/libmstoolkit-tools/usr/bin/msSingleScan dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/libmstoolkit-tools/usr/bin/msSingleScan contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit-tools/usr/bin/msSingleScan was not linked against libexpat.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit-tools/usr/bin/msSingleScan was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit-tools/usr/bin/msSingleScan was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit-tools/usr/bin/msSingleScan was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit-tools/usr/bin/msSingleScan was not linked against libsqlite3.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmstoolkit82/usr/lib/libmstoolkit.so.82.0.0 debian/libmstoolkit82/usr/lib/libmstoolkitlite.so.82.0.0 were not linked against libdl.so.2 (they use none of the library's symbols) dh_installdeb install -d debian/libmstoolkit-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libmstoolkit82/triggers debian/libmstoolkit82/DEBIAN/triggers dh_gencontrol echo misc:Depends= >> debian/libmstoolkit-dev.substvars echo misc:Pre-Depends= >> debian/libmstoolkit-dev.substvars dpkg-gencontrol -plibmstoolkit-dev -ldebian/changelog -Tdebian/libmstoolkit-dev.substvars -Pdebian/libmstoolkit-dev -UMulti-Arch echo misc:Depends= >> debian/libmstoolkit-tools.substvars echo misc:Pre-Depends= >> debian/libmstoolkit-tools.substvars install -d debian/.debhelper/libmstoolkit-tools/dbgsym-root/DEBIAN dpkg-gencontrol -plibmstoolkit-tools -ldebian/changelog -Tdebian/libmstoolkit-tools.substvars -Pdebian/.debhelper/libmstoolkit-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libmstoolkit-tools-dbgsym "-DDepends=libmstoolkit-tools (= \${binary:Version})" "-DDescription=debug symbols for libmstoolkit-tools" -DBuild-Ids=a9c991af08f9ce692e63b5cf9a305d36084a9969 -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/libmstoolkit82.substvars echo misc:Pre-Depends= >> debian/libmstoolkit82.substvars install -d debian/.debhelper/libmstoolkit82/dbgsym-root/DEBIAN dpkg-gencontrol -plibmstoolkit82 -ldebian/changelog -Tdebian/libmstoolkit82.substvars -Pdebian/.debhelper/libmstoolkit82/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libmstoolkit82-dbgsym "-DDepends=libmstoolkit82 (= \${binary:Version})" "-DDescription=debug symbols for libmstoolkit82" "-DBuild-Ids=98031cf6e94c31645ee5afea620154d5851795b1 c11d5196b118fa5538af907b0eb9eea81bb23574" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/libmstoolkit-dev/DEBIAN/control chown 0:0 -- debian/libmstoolkit-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libmstoolkit-tools/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libmstoolkit-tools/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibmstoolkit-tools -ldebian/changelog -Tdebian/libmstoolkit-tools.substvars -Pdebian/libmstoolkit-tools -UMulti-Arch chmod 0644 -- debian/.debhelper/libmstoolkit82/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libmstoolkit82/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibmstoolkit82 -ldebian/changelog -Tdebian/libmstoolkit82.substvars -Pdebian/libmstoolkit82 -UMulti-Arch chmod 0644 -- debian/libmstoolkit-tools/DEBIAN/control chown 0:0 -- debian/libmstoolkit-tools/DEBIAN/control chmod 0644 -- debian/libmstoolkit82/DEBIAN/control chown 0:0 -- debian/libmstoolkit82/DEBIAN/control dh_md5sums cd debian/libmstoolkit-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libmstoolkit-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libmstoolkit82 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libmstoolkit-tools/DEBIAN/md5sums chown 0:0 -- debian/libmstoolkit-tools/DEBIAN/md5sums chmod 0644 -- debian/libmstoolkit-dev/DEBIAN/md5sums chown 0:0 -- debian/libmstoolkit-dev/DEBIAN/md5sums chmod 0644 -- debian/libmstoolkit82/DEBIAN/md5sums chown 0:0 -- debian/libmstoolkit82/DEBIAN/md5sums cd debian/.debhelper/libmstoolkit-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/libmstoolkit82/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libmstoolkit-tools/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libmstoolkit-tools/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libmstoolkit82/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libmstoolkit82/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/libmstoolkit-dev .. dpkg-deb --build debian/.debhelper/libmstoolkit82/dbgsym-root .. dpkg-deb --build debian/.debhelper/libmstoolkit-tools/dbgsym-root .. dpkg-deb: building package 'libmstoolkit-dev' in '../libmstoolkit-dev_82-6_armhf.deb'. dpkg-deb: building package 'libmstoolkit82-dbgsym' in '../libmstoolkit82-dbgsym_82-6_armhf.deb'. dpkg-deb: building package 'libmstoolkit-tools-dbgsym' in '../libmstoolkit-tools-dbgsym_82-6_armhf.deb'. dpkg-deb --build debian/libmstoolkit82 .. dpkg-deb: building package 'libmstoolkit82' in '../libmstoolkit82_82-6_armhf.deb'. dpkg-deb --build debian/libmstoolkit-tools .. dpkg-deb: building package 'libmstoolkit-tools' in '../libmstoolkit-tools_82-6_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libmstoolkit_82-6_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19508 and its subdirectories I: Current time: Wed Jun 17 02:54:35 -12 2020 I: pbuilder-time-stamp: 1592405675